Mus	ANCESTRAL SPECIES		ENSGT00940000157412.b	ENSGT00940000157409 #7	ENSGT00390000000628 #8	ENSGT00390000003175.a.a #10	ENSGT00940000160584 #11	ENSGT00940000162971.c.a #12	ENSGT00940000154908.s.a #13	ENSGT00940000154908.s.b #14	ENSGT00940000162971.c.b #15	ENSGT00940000157274 #16	ENSGT00390000005889 #17	ENSGT00940000156000 #18	ENSGT00950000182937.A.a #19	ENSGT00390000014666.b #20	ENSGT00940000163402 #21	ENSGT00940000158235 #22	ENSGT00950000183088.a.b.a #23	ENSGT00940000161741 #24	ENSGT00390000008454 #25	ENSGT00390000002223 #26	ENSGT01100000263540.B.c #27	ENSGT00940000157049 #28	ENSGT00940000157556 #29	ENSGT00950000183082.b.b.b #30	ENSGT00940000157525 #31	ENSGT00390000004874.a.a #32	ENSGT00390000015298 #33	ENSGT00390000011684 #34	ENSGT00940000157042 #35	ENSGT00530000063711.b #36	ENSGT00390000013726 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000157409 #7	ENSGT00390000000628 #8	ENSGT00940000169317	ENSGT00390000003175.a.a #10	ENSGT00940000160584 #11	ENSGT00940000162971.c.a.a #12	ENSGT00940000154908.s.a #13	ENSGT00940000154908.s.b #14	ENSGT00940000162971.c.b #15	ENSGT00940000157274 #16	ENSGT00390000005889 #17	ENSGT00940000156000 #18	ENSGT00950000182937.A.a #19	ENSGT00390000014666.b #20	ENSGT00940000163402 #21	ENSGT00940000158235 #22	ENSGT00950000183088.a.b.a #23	ENSGT00940000161741 #24	ENSGT00390000008454 #25	ENSGT00390000002223 #26	ENSGT01100000263540.B.c #27	ENSGT00940000157049 #28	ENSGT00940000157556 #29	ENSGT00950000183082.b.b.b #30	ENSGT00940000157525 #31	ENSGT00390000004874.a.a #32	ENSGT00390000015298 #33	ENSGT00390000011684 #34	ENSGT00940000157042 #35	ENSGT00530000063711.b #36	ENSGT00390000013726 #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000157409 #7	ENSGT00390000000628 #8	ENSGT00940000169317	ENSGT00390000003175.a.a #10	ENSGT00940000160584 #11	ENSGT00940000162971.c.a.a #12	ENSGT00940000154908.s.a #13	ENSGT00940000154908.s.b #14	ENSGT00940000162971.c.b #15	ENSGT00940000157274 #16	ENSGT00390000005889 #17	ENSGT00940000156000 #18	ENSGT00950000182937.A.a #19	ENSGT00390000014666.b #20	ENSGT00940000163402 #21	ENSGT00940000158235 #22	ENSGT00950000183088.a.b.a #23	ENSGT00940000161741 #24	ENSGT00390000008454 #25	ENSGT00390000002223 #26	ENSGT01100000263540.B.c #27	ENSGT00940000157049 #28	ENSGT00940000157556 #29	ENSGT00950000183082.b.b.b #30	ENSGT00940000157525 #31	ENSGT00390000004874.a.a #32	ENSGT00390000015298 #33	ENSGT00390000011684 #34	ENSGT00940000157042 #35	ENSGT00530000063711.b #36	ENSGT00390000013726 #37
Mouse	MODERN SPECIES	10	Hif1an (ENSMUSG00000036450) #7	Ndufb8 (ENSMUSG00000025204) #8	Gm20538 (ENSMUSG00000091471) #9	Sec31b (ENSMUSG00000051984) #10	Wnt8b (ENSMUSG00000036961) #11	Scd1 (ENSMUSG00000037071) #12	Scd4 (ENSMUSG00000050195) #13	Scd2 (ENSMUSG00000025203) #14	Scd3 (ENSMUSG00000025202) #15	Pkd2l1 (ENSMUSG00000037578) #16	Bloc1s2 (ENSMUSG00000057506) #17	Cwf19l1 (ENSMUSG00000025200) #18	Chuk (ENSMUSG00000025199) #19	Erlin1 (ENSMUSG00000025198) #20	Cyp2c23 (ENSMUSG00000025197) #21	Cpn1 (ENSMUSG00000025196) #22	Dnmbp (ENSMUSG00000025195) #23	Abcc2 (ENSMUSG00000025194) #24	Cutc (ENSMUSG00000025193) #25	Cox15 (ENSMUSG00000040018) #26	Entpd7 (ENSMUSG00000025192) #27	Slc25a28 (ENSMUSG00000040414) #28	Nkx2-3 (ENSMUSG00000044220) #29	Got1 (ENSMUSG00000025190) #30	Cnnm1 (ENSMUSG00000025189) #31	Hpse2 (ENSMUSG00000074852) #32	Hps1 (ENSMUSG00000025188) #33	Pyroxd2 (ENSMUSG00000060224) #34	Loxl4 (ENSMUSG00000025185) #35	R3hcc1l (ENSMUSG00000025184) #36	Crtac1 (ENSMUSG00000042401) #37
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000157409 #7	ENSGT00390000000628 #8	ENSGT00940000169317	ENSGT00390000003175.a.a #10	ENSGT00940000160584 #11	ENSGT00940000162971.c.a.a #12	ENSGT00940000154908.s.a #13	ENSGT00940000154908.s.b #14	ENSGT00940000162971.c.b #15	ENSGT00940000157274 #16	ENSGT00390000005889 #17	ENSGT00940000156000 #18	ENSGT00950000182937.A.a #19	ENSGT00390000014666.b #20	ENSGT00940000163402 #21	ENSGT00940000158235 #22	ENSGT00950000183088.a.b.a #23	ENSGT00940000161741 #24	ENSGT00390000008454 #25	ENSGT00390000002223 #26	ENSGT01100000263540.B.c #27	ENSGT00940000157049 #28	ENSGT00940000157556 #29	ENSGT00950000183082.b.b.b #30	ENSGT00940000157525 #31	ENSGT00390000004874.a.a #32	ENSGT00390000015298 #33	ENSGT00390000011684 #34	ENSGT00940000157042 #35	ENSGT00530000063711.b #36	ENSGT00390000013726 #37
spretus	MODERN SPECIES	10	Hif1an (MGP_SPRETEiJ_G0023924) #7	Ndufb8 (MGP_SPRETEiJ_G0023923) #8	MGP_SPRETEiJ_G0023922	Sec31b (MGP_SPRETEiJ_G0023921) #10	Wnt8b (MGP_SPRETEiJ_G0023920) #11	Scd1 (MGP_SPRETEiJ_G0023919) #12	Scd4 (MGP_SPRETEiJ_G0023918) #13	Scd2 (MGP_SPRETEiJ_G0023917) #14	Scd3 (MGP_SPRETEiJ_G0023916) #15	Pkd2l1 (MGP_SPRETEiJ_G0023915) #16	Bloc1s2 (MGP_SPRETEiJ_G0023914) #17	Cwf19l1 (MGP_SPRETEiJ_G0023913) #18	Chuk (MGP_SPRETEiJ_G0023912) #19	Erlin1 (MGP_SPRETEiJ_G0023911) #20	Cyp2c23 (MGP_SPRETEiJ_G0023910) #21	Cpn1 (MGP_SPRETEiJ_G0023909) #22	Dnmbp (MGP_SPRETEiJ_G0023908) #23	Abcc2 (MGP_SPRETEiJ_G0023907) #24	Cutc (MGP_SPRETEiJ_G0023906) #25	Cox15 (MGP_SPRETEiJ_G0023905) #26	Entpd7 (MGP_SPRETEiJ_G0023904) #27	Slc25a28 (MGP_SPRETEiJ_G0023903) #28	Nkx2-3 (MGP_SPRETEiJ_G0023902) #29	Got1 (MGP_SPRETEiJ_G0023901) #30	Cnnm1 (MGP_SPRETEiJ_G0023900) #31	Hpse2 (MGP_SPRETEiJ_G0023899) #32	Hps1 (MGP_SPRETEiJ_G0023898) #33	Pyroxd2 (MGP_SPRETEiJ_G0023897) #34	Loxl4 (MGP_SPRETEiJ_G0023896) #35	R3hcc1l (MGP_SPRETEiJ_G0023895) #36	Crtac1 (MGP_SPRETEiJ_G0023894) #37
Steppe mouse	MODERN SPECIES	3317	Pax2 (ENSMSIG00000013194)	Hif1an (ENSMSIG00000013295) #7	Ndufb8 (ENSMSIG00000013308) #8	Sec31b (ENSMSIG00000013336) #10	Wnt8b (ENSMSIG00000013462) #11	Scd1 (ENSMSIG00000013486) #12	Scd2 (ENSMSIG00000013492) #14	ENSMSIG00000013562	ENSMSIG00000013578 ##12	ENSMSIG00000013604 #13	Pkd2l1 (ENSMSIG00000013623) #16	ENSMSIG00000013690 #17	Cwf19l1 (ENSMSIG00000013717) #18	Chuk (ENSMSIG00000013784) #19	ENSMSIG00000013896 #21	Cpn1 (ENSMSIG00000013970) #22	Dnmbp (ENSMSIG00000013995) #23	Abcc2 (ENSMSIG00000014396) #24	Cutc (ENSMSIG00000014461) #25	Cox15 (ENSMSIG00000014488) #26	Entpd7 (ENSMSIG00000014516) #27	Slc25a28 (ENSMSIG00000014549) #28	Nkx2-3 (ENSMSIG00000014564) #29	ENSMSIG00000014579 #30	Cnnm1 (ENSMSIG00000014602) #31	ENSMSIG00000014652 #32	ENSMSIG00000014659
Ryukyu mouse	MODERN SPECIES	10	Hif1an (MGP_CAROLIEiJ_G0023003) #7	Ndufb8 (MGP_CAROLIEiJ_G0023002) #8	MGP_CAROLIEiJ_G0023001	Sec31b (MGP_CAROLIEiJ_G0023000) #10	Wnt8b (MGP_CAROLIEiJ_G0022999) #11	Scd1 (MGP_CAROLIEiJ_G0022998) #12	Scd4 (MGP_CAROLIEiJ_G0022997) #13	Scd2 (MGP_CAROLIEiJ_G0022996) #14	Scd3 (MGP_CAROLIEiJ_G0022995) #15	Pkd2l1 (MGP_CAROLIEiJ_G0022994) #16	Bloc1s2 (MGP_CAROLIEiJ_G0022993) #17	Cwf19l1 (MGP_CAROLIEiJ_G0022992) #18	Chuk (MGP_CAROLIEiJ_G0022991) #19	Erlin1 (MGP_CAROLIEiJ_G0022990) #20	Cyp2c23 (MGP_CAROLIEiJ_G0022989) #21	Cpn1 (MGP_CAROLIEiJ_G0022988) #22	Dnmbp (MGP_CAROLIEiJ_G0022987) #23	Abcc2 (MGP_CAROLIEiJ_G0022986) #24	Cutc (MGP_CAROLIEiJ_G0022985) #25	Cox15 (MGP_CAROLIEiJ_G0022984) #26	Entpd7 (MGP_CAROLIEiJ_G0022983) #27	Slc25a28 (MGP_CAROLIEiJ_G0022982) #28	Nkx2-3 (MGP_CAROLIEiJ_G0022981) #29	Got1 (MGP_CAROLIEiJ_G0022980) #30	Cnnm1 (MGP_CAROLIEiJ_G0022979) #31	Hpse2 (MGP_CAROLIEiJ_G0022978) #32	Hps1 (MGP_CAROLIEiJ_G0022977) #33	Pyroxd2 (MGP_CAROLIEiJ_G0022976) #34	Loxl4 (MGP_CAROLIEiJ_G0022975) #35	R3hcc1l (MGP_CAROLIEiJ_G0022974) #36	Crtac1 (MGP_CAROLIEiJ_G0022973) #37
Shrew mouse	MODERN SPECIES		Hif1an (MGP_PahariEiJ_G0014493) #7	Ndufb8 (MGP_PahariEiJ_G0014492) #8	MGP_PahariEiJ_G0014491	MGP_PahariEiJ_G0014490	Wnt8b (MGP_PahariEiJ_G0014489) #11	Scd1 (MGP_PahariEiJ_G0014488) #12	MGP_PahariEiJ_G0014487 #13	Scd2 (MGP_PahariEiJ_G0014486) #14	Scd3 (MGP_PahariEiJ_G0014485) #15	Pkd2l1 (MGP_PahariEiJ_G0014484) #16	Bloc1s2 (MGP_PahariEiJ_G0014483) #17	Cwf19l1 (MGP_PahariEiJ_G0014482) #18	Chuk (MGP_PahariEiJ_G0014481) #19	Erlin1 (MGP_PahariEiJ_G0014480) #20	Cyp2c23 (MGP_PahariEiJ_G0014479) #21	Cpn1 (MGP_PahariEiJ_G0014478) #22	Dnmbp (MGP_PahariEiJ_G0014477) #23	Abcc2 (MGP_PahariEiJ_G0014476) #24	Cutc (MGP_PahariEiJ_G0014475) #25	Cox15 (MGP_PahariEiJ_G0014474) #26	Entpd7 (MGP_PahariEiJ_G0014473) #27	Slc25a28 (MGP_PahariEiJ_G0014472) #28	Nkx2-3 (MGP_PahariEiJ_G0014471) #29	Got1 (MGP_PahariEiJ_G0014470) #30	Cnnm1 (MGP_PahariEiJ_G0014469) #31	Hpse2 (MGP_PahariEiJ_G0014468) #32	Hps1 (MGP_PahariEiJ_G0014467) #33	Pyroxd2 (MGP_PahariEiJ_G0014466) #34	Loxl4 (MGP_PahariEiJ_G0014465) #35	R3hcc1l (MGP_PahariEiJ_G0014464) #36	Crtac1 (MGP_PahariEiJ_G0014463) #37