Euteleostomi	ANCESTRAL SPECIES	164	ENSGT00390000000083.a	ENSGT00940000160910	ENSGT00950000183096.a.a.d	ENSGT00940000167863	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552	ENSGT00940000154902	ENSGT00940000165200	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00940000160678.b	ENSGT00940000159934
Sarcopterygii	ANCESTRAL SPECIES	612																ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000160678.b	ENSGT00940000159934
Tetrapoda	ANCESTRAL SPECIES	227								ENSGT00940000160447	ENSGT00390000009109	ENSGT00940000164039	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000160533	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22
Amniota	ANCESTRAL SPECIES	83														ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593
Mammalia	ANCESTRAL SPECIES	29	ENSGT00440000039164	ENSGT00440000039324	ENSGT00940000161544	ENSGT00940000157231	ENSGT00390000013593	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Theria	ANCESTRAL SPECIES	15	ENSGT00940000161544	ENSGT00940000157231	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00510000048956	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Primates	ANCESTRAL SPECIES		ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Strepsirrhini	ANCESTRAL SPECIES	48										ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Lemuriformes	ANCESTRAL SPECIES	86										ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Lemuriformes_a	ANCESTRAL SPECIES	198										ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
Greater bamboo lemur	MODERN SPECIES	40															PUS3 (ENSPSMG00000008021) #21	HYLS1 (ENSPSMG00000008015) #22	DDX25 (ENSPSMG00000007997) #23	CDON (ENSPSMG00000007926) #24	ENSPSMG00000007854 #25	RPUSD4 (ENSPSMG00000007844) #26	FAM118B (ENSPSMG00000007833) #27	SRPRA (ENSPSMG00000007745) #28	FOXRED1 (ENSPSMG00000007650) #29	TIRAP (ENSPSMG00000007625) #30	DCPS (ENSPSMG00000007617) #31	ST3GAL4 (ENSPSMG00000007518) #32	KIRREL3 (ENSPSMG00000007332) #33
Bushbaby	MODERN SPECIES	212												PATE1 (ENSOGAG00000013405)	PATE2 (ENSOGAG00000013407)	ENSOGAG00000029669	PUS3 (ENSOGAG00000008913) #21	HYLS1 (ENSOGAG00000008916) #22	DDX25 (ENSOGAG00000013409) #23	CDON (ENSOGAG00000008918) #24	ENSOGAG00000028968	RPUSD4 (ENSOGAG00000008922) #26	FAM118B (ENSOGAG00000008923) #27	SRPRA (ENSOGAG00000008926) #28	FOXRED1 (ENSOGAG00000008933) #29	TIRAP (ENSOGAG00000008935) #30	DCPS (ENSOGAG00000008937) #31	ST3GAL4 (ENSOGAG00000010459) #32	KIRREL3 (ENSOGAG00000010463) #33	ETS1 (ENSOGAG00000015467)	FLI1 (ENSOGAG00000013083)	KCNJ1 (ENSOGAG00000031352)	KCNJ5 (ENSOGAG00000013078)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Simiiformes	ANCESTRAL SPECIES		ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Vervet Monkey	MODERN SPECIES		HEPACAM (ENSCSAG00000002336)	CCDC15 (ENSCSAG00000002331)	SLC37A2 (ENSCSAG00000002323)	TMEM218 (ENSCSAG00000002313)	PKNOX2 (ENSCSAG00000002312)	FEZ1 (ENSCSAG00000002308)	EI24 (ENSCSAG00000002304)	STT3A (ENSCSAG00000002298)	CHEK1 (ENSCSAG00000002294)	PATE3 (ENSCSAG00000002291)	ACRV1 (ENSCSAG00000002289)	PATE1 (ENSCSAG00000002287)	PATE2 (ENSCSAG00000002285)	PATE4 (ENSCSAG00000002282)	PUS3 (ENSCSAG00000002281) #21	HYLS1 (ENSCSAG00000000583) #22	DDX25 (ENSCSAG00000002279) #23	CDON (ENSCSAG00000002277) #24	RPUSD4 (ENSCSAG00000002274) #26	FAM118B (ENSCSAG00000002272) #27	SRPRA (ENSCSAG00000002271) #28	FOXRED1 (ENSCSAG00000002267) #29	TIRAP (ENSCSAG00000002260) #30	ENSCSAG00000002258	DCPS (ENSCSAG00000002256) #31	ST3GAL4 (ENSCSAG00000002253) #32	KIRREL3 (ENSCSAG00000002248) #33	ENSCSAG00000002244	ETS1 (ENSCSAG00000002243)	FLI1 (ENSCSAG00000002240)	KCNJ1 (ENSCSAG00000002237)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00910000147854	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00910000147854	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00910000147854	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000059820	CCDC15 (ENSMFAG00000038419)	SLC37A2 (ENSMFAG00000002233)	TMEM218 (ENSMFAG00000035993)	PKNOX2 (ENSMFAG00000046199)	FEZ1 (ENSMFAG00000002076)	EI24 (ENSMFAG00000042989)	STT3A (ENSMFAG00000034547)	CHEK1 (ENSMFAG00000000771)	ACRV1 (ENSMFAG00000036664)	ENSMFAG00000052402	PATE1 (ENSMFAG00000000989)	PATE2 (ENSMFAG00000003094)	PATE3 (ENSMFAG00000052555)	PATE4 (ENSMFAG00000045027)	HYLS1 (ENSMFAG00000010478) #22	ENSMFAG00000030379	PUS3 (ENSMFAG00000041002) #21	DDX25 (ENSMFAG00000040048) #23	VSIG10L2 (ENSMFAG00000038033)	CDON (ENSMFAG00000033244) #24	RPUSD4 (ENSMFAG00000039513) #26	FAM118B (ENSMFAG00000003040) #27	SRPRA (ENSMFAG00000032606) #28	FOXRED1 (ENSMFAG00000031974) #29	ENSMFAG00000049868	ENSMFAG00000042234 #30	DCPS (ENSMFAG00000057084) #31	ST3GAL4 (ENSMFAG00000039592) #32	KIRREL3 (ENSMFAG00000043359) #33	ENSMFAG00000064567
Rhesus	MODERN SPECIES	5	ENSMMUG00000061647	PKNOX2 (ENSMMUG00000008053)	FEZ1 (ENSMMUG00000008048)	ENSMMUG00000057529	EI24 (ENSMMUG00000010009)	STT3A (ENSMMUG00000054773)	CHEK1 (ENSMMUG00000010010)	ACRV1 (ENSMMUG00000014812)	ENSMMUG00000050731	ENSMMUG00000060925	PATE1 (ENSMMUG00000020210)	PATE2 (ENSMMUG00000038587)	PATE3 (ENSMMUG00000060291)	ENSMMUG00000014120	PATE4 (ENSMMUG00000039042)	HYLS1 (ENSMMUG00000048333) #22	PUS3 (ENSMMUG00000041875) #21	DDX25 (ENSMMUG00000007624) #23	VSIG10L2 (ENSMMUG00000065066)	CDON (ENSMMUG00000007628) #24	RPUSD4 (ENSMMUG00000007933) #26	FAM118B (ENSMMUG00000007935) #27	SRPRA (ENSMMUG00000007938) #28	FOXRED1 (ENSMMUG00000007944) #29	TIRAP (ENSMMUG00000051458) #30	DCPS (ENSMMUG00000054996) #31	ST3GAL4 (ENSMMUG00000006929) #32	KIRREL3 (ENSMMUG00000006931) #33	ENSMMUG00000049540	ETS1 (ENSMMUG00000020706)	FLI1 (ENSMMUG00000003141)
Pig-tailed macaque	MODERN SPECIES	537	HEPACAM (ENSMNEG00000038102)	CCDC15 (ENSMNEG00000040047)	SLC37A2 (ENSMNEG00000009671)	TMEM218 (ENSMNEG00000028980)	PKNOX2 (ENSMNEG00000035835)	FEZ1 (ENSMNEG00000027684)	EI24 (ENSMNEG00000039166)	STT3A (ENSMNEG00000043543)	ACRV1 (ENSMNEG00000032872)	CHEK1 (ENSMNEG00000044946)	PATE1 (ENSMNEG00000034376)	PATE3 (ENSMNEG00000045440)	PATE2 (ENSMNEG00000028871)	PATE4 (ENSMNEG00000042116)	ENSMNEG00000027092	HYLS1 (ENSMNEG00000028176) #22	PUS3 (ENSMNEG00000045347) #21	DDX25 (ENSMNEG00000034512) #23	VSIG10L2 (ENSMNEG00000044175)	CDON (ENSMNEG00000028538) #24	ENSMNEG00000034403	RPUSD4 (ENSMNEG00000027414) #26	FAM118B (ENSMNEG00000038757) #27	SRPRA (ENSMNEG00000030709) #28	FOXRED1 (ENSMNEG00000030710) #29	TIRAP (ENSMNEG00000034781) #30	DCPS (ENSMNEG00000029735) #31	ST3GAL4 (ENSMNEG00000035708) #32	KIRREL3 (ENSMNEG00000030417) #33	ENSMNEG00000035931	ETS1 (ENSMNEG00000016336)
Cercopithecinae_b	ANCESTRAL SPECIES	21	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00910000147854	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924.t #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519	ENSGT00940000158261
Olive baboon	MODERN SPECIES	3	ROBO4 (ENSPANG00000009754)	HEPACAM (ENSPANG00000026254)	CCDC15 (ENSPANG00000010524)	SLC37A2 (ENSPANG00000014341)	TMEM218 (ENSPANG00000017161)	PKNOX2 (ENSPANG00000014340)	FEZ1 (ENSPANG00000030767)	EI24 (ENSPANG00000023740)	STT3A (ENSPANG00000004684)	ACRV1 (ENSPANG00000010859)	CHEK1 (ENSPANG00000009132)	PATE1 (ENSPANG00000029882)	PATE2 (ENSPANG00000010523)	PATE3 (ENSPANG00000019797)	PATE4 (ENSPANG00000004947)	HYLS1 (ENSPANG00000014695) #22	PUS3 (ENSPANG00000013782) #21	DDX25 (ENSPANG00000005372) #23	VSIG10L2 (ENSPANG00000029533)	CDON (ENSPANG00000016858) #24	RPUSD4 (ENSPANG00000015040) #26	FAM118B (ENSPANG00000011813) #27	SRPRA (ENSPANG00000010858) #28	FOXRED1 (ENSPANG00000005037) #29	TIRAP (ENSPANG00000039042) #30	DCPS (ENSPANG00000010632) #31	ENSPANG00000042602 #31	ENSPANG00000023927 #32	KIRREL3 (ENSPANG00000010857) #33	ENSPANG00000049923	ENSPANG00000047448
Cercopithecinae_d	ANCESTRAL SPECIES	30	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00910000147854	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924.t #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519	ENSGT00940000158261
Sooty mangabey	MODERN SPECIES	603	CCDC15 (ENSCATG00000028817)	SLC37A2 (ENSCATG00000036580)	TMEM218 (ENSCATG00000007615)	PKNOX2 (ENSCATG00000037393)	FEZ1 (ENSCATG00000042876)	EI24 (ENSCATG00000040611)	STT3A (ENSCATG00000018377)	CHEK1 (ENSCATG00000020189)	ACRV1 (ENSCATG00000036586)	PATE1 (ENSCATG00000044754)	PATE2 (ENSCATG00000036528)	PATE3 (ENSCATG00000044828)	ENSCATG00000040866	PATE4 (ENSCATG00000041115)	PUS3 (ENSCATG00000043123) #21	HYLS1 (ENSCATG00000019190) #22	DDX25 (ENSCATG00000042562) #23	VSIG10L2 (ENSCATG00000041159)	CDON (ENSCATG00000043400) #24	RPUSD4 (ENSCATG00000041570) #26	FAM118B (ENSCATG00000011672) #27	SRPRA (ENSCATG00000039354) #28	FOXRED1 (ENSCATG00000036900) #29	TIRAP (ENSCATG00000034587) #30	DCPS (ENSCATG00000006118) #31	ST3GAL4 (ENSCATG00000041462) #32	KIRREL3 (ENSCATG00000033720) #33	ENSCATG00000035453	ETS1 (ENSCATG00000035558)	FLI1 (ENSCATG00000043673)	KCNJ1 (ENSCATG00000032588)
Drill	MODERN SPECIES	1380				PKNOX2 (ENSMLEG00000043112)	FEZ1 (ENSMLEG00000040338)	EI24 (ENSMLEG00000041112)	STT3A (ENSMLEG00000027470)	CHEK1 (ENSMLEG00000032859)	ACRV1 (ENSMLEG00000033433)	PATE1 (ENSMLEG00000028089)	PATE2 (ENSMLEG00000034068)	PATE3 (ENSMLEG00000033109)	ENSMLEG00000032059	PATE4 (ENSMLEG00000036145)	ENSMLEG00000003295	HYLS1 (ENSMLEG00000018345) #22	PUS3 (ENSMLEG00000029053) #21	DDX25 (ENSMLEG00000041703) #23	VSIG10L2 (ENSMLEG00000031705)	CDON (ENSMLEG00000038907) #24	ENSMLEG00000034453	RPUSD4 (ENSMLEG00000042461) #26	FAM118B (ENSMLEG00000003442) #27	SRPRA (ENSMLEG00000043404) #28	FOXRED1 (ENSMLEG00000038609) #29	TIRAP (ENSMLEG00000043606) #30	DCPS (ENSMLEG00000028091) #31	ST3GAL4 (ENSMLEG00000035571) #32	KIRREL3 (ENSMLEG00000040698) #33
Rhinopithecus	ANCESTRAL SPECIES	121					ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655.a	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Golden snub-nosed monkey	MODERN SPECIES	2808					PKNOX2 (ENSRROG00000013278)	FEZ1 (ENSRROG00000034766)	ENSRROG00000030105	ENSRROG00000037679	ACRV1 (ENSRROG00000033372)	PATE1 (ENSRROG00000027207)	PATE2 (ENSRROG00000038623)	PATE3 (ENSRROG00000012771)	ENSRROG00000034353	PATE4 (ENSRROG00000038206)	PUS3 (ENSRROG00000035245) #21	HYLS1 (ENSRROG00000028439) #22	DDX25 (ENSRROG00000033468) #23	VSIG10L2 (ENSRROG00000034330)	CDON (ENSRROG00000032760) #24	ENSRROG00000035797	RPUSD4 (ENSRROG00000039753) #26	FAM118B (ENSRROG00000045192) #27	SRPRA (ENSRROG00000029494) #28	FOXRED1 (ENSRROG00000038351) #29	TIRAP (ENSRROG00000045268) #30	DCPS (ENSRROG00000033864) #31	ST3GAL4 (ENSRROG00000045429) #32	KIRREL3 (ENSRROG00000040694) #33	ETS1 (ENSRROG00000016097)	FLI1 (ENSRROG00000038261)	KCNJ1 (ENSRROG00000043080)
Hominoidea	ANCESTRAL SPECIES	1	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Hominidae	ANCESTRAL SPECIES	1	ENSGT00510000055197	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00510000055197	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793.l	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT01100000263551.a	ENSGT00510000055197	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793.l	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519
Human	MODERN SPECIES	2	HEPACAM (ENSG00000165478)	HEPN1 (ENSG00000221932)	CCDC15 (ENSG00000149548)	SLC37A2 (ENSG00000134955)	TMEM218 (ENSG00000150433)	PKNOX2 (ENSG00000165495)	FEZ1 (ENSG00000149557)	EI24 (ENSG00000149547)	STT3A (ENSG00000134910)	CHEK1 (ENSG00000149554)	ACRV1 (ENSG00000134940)	PATE1 (ENSG00000171053)	PATE2 (ENSG00000196844)	PATE3 (ENSG00000236027)	PATE4 (ENSG00000237353)	HYLS1 (ENSG00000198331) #22	PUS3 (ENSG00000110060) #21	DDX25 (ENSG00000109832) #23	VSIG10L2 (ENSG00000283703)	CDON (ENSG00000064309) #24	RPUSD4 (ENSG00000165526) #26	FAM118B (ENSG00000197798) #27	SRPRA (ENSG00000182934) #28	FOXRED1 (ENSG00000110074) #29	TIRAP (ENSG00000150455) #30	DCPS (ENSG00000110063) #31	ST3GAL4 (ENSG00000110080) #32	KIRREL3 (ENSG00000149571) #33	ETS1 (ENSG00000134954)	FLI1 (ENSG00000151702)	KCNJ1 (ENSG00000151704)
Pan	ANCESTRAL SPECIES	1	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793.l	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161696.d	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00910000147313	ENSGT00940000159519	ENSGT00940000158261
Chimpanzee	MODERN SPECIES	2	HEPN1 (ENSPTRG00000042105)	CCDC15 (ENSPTRG00000004436)	SLC37A2 (ENSPTRG00000004437)	TMEM218 (ENSPTRG00000004438)	PKNOX2 (ENSPTRG00000004440)	FEZ1 (ENSPTRG00000004442)	EI24 (ENSPTRG00000004444)	STT3A (ENSPTRG00000004445)	CHEK1 (ENSPTRG00000004446)	ACRV1 (ENSPTRG00000004447)	PATE1 (ENSPTRG00000004448)	PATE2 (ENSPTRG00000022862)	PATE3 (ENSPTRG00000039230)	PATE4 (ENSPTRG00000039696)	PUS3 (ENSPTRG00000004449) #21	HYLS1 (ENSPTRG00000028362) #22	DDX25 (ENSPTRG00000004450) #23	VSIG10L2 (ENSPTRG00000045947)	CDON (ENSPTRG00000004452) #24	ENSPTRG00000050001	RPUSD4 (ENSPTRG00000004454) #26	FAM118B (ENSPTRG00000023950) #27	SRPRA (ENSPTRG00000028360) #28	FOXRED1 (ENSPTRG00000004457) #29	TIRAP (ENSPTRG00000004458) #30	DCPS (ENSPTRG00000004459) #31	ST3GAL4 (ENSPTRG00000004461) #32	KIRREL3 (ENSPTRG00000004462) #33	ENSPTRG00000048532	ETS1 (ENSPTRG00000004466)	FLI1 (ENSPTRG00000004467)
Orangutan	MODERN SPECIES	2	HEPN1 (ENSPPYG00000004024)	HEPACAM (ENSPPYG00000004025)	CCDC15 (ENSPPYG00000004026)	SLC37A2 (ENSPPYG00000004027)	TMEM218 (ENSPPYG00000004028)	PKNOX2 (ENSPPYG00000004030)	FEZ1 (ENSPPYG00000004031)	EI24 (ENSPPYG00000004033)	STT3A (ENSPPYG00000004034)	ENSPPYG00000004035	ACRV1 (ENSPPYG00000004036)	PATE1 (ENSPPYG00000004037)	ENSPPYG00000031717	PATE3 (ENSPPYG00000041702)	PATE4 (ENSPPYG00000039363)	HYLS1 (ENSPPYG00000004040) #22	PUS3 (ENSPPYG00000004039) #21	DDX25 (ENSPPYG00000004041) #23	VSIG10L2 (ENSPPYG00000033005)	CDON (ENSPPYG00000004042) #24	RPUSD4 (ENSPPYG00000004043) #26	FAM118B (ENSPPYG00000004044) #27	SRPRA (ENSPPYG00000004045) #28	FOXRED1 (ENSPPYG00000004046) #29	TIRAP (ENSPPYG00000004047) #30	DCPS (ENSPPYG00000004048) #31	ST3GAL4 (ENSPPYG00000004049) #32	KIRREL3 (ENSPPYG00000004050) #33	ETS1 (ENSPPYG00000004051)	FLI1 (ENSPPYG00000004052)	KCNJ1 (ENSPPYG00000004053)
Gibbon	MODERN SPECIES	5	HEPACAM (ENSNLEG00000007440)	CCDC15 (ENSNLEG00000007445)	SLC37A2 (ENSNLEG00000007446)	ENSNLEG00000033002	PKNOX2 (ENSNLEG00000007448)	FEZ1 (ENSNLEG00000007449)	EI24 (ENSNLEG00000032257)	STT3A (ENSNLEG00000007452)	ENSNLEG00000007453	ACRV1 (ENSNLEG00000007454)	PATE1 (ENSNLEG00000007455)	PATE2 (ENSNLEG00000007456)	PATE3 (ENSNLEG00000031615)	ENSNLEG00000033582	PATE4 (ENSNLEG00000007458)	HYLS1 (ENSNLEG00000007459) #22	PUS3 (ENSNLEG00000007460) #21	DDX25 (ENSNLEG00000007461) #23	VSIG10L2 (ENSNLEG00000028921)	CDON (ENSNLEG00000007464) #24	RPUSD4 (ENSNLEG00000007465) #26	FAM118B (ENSNLEG00000007466) #27	SRPRA (ENSNLEG00000007467) #28	FOXRED1 (ENSNLEG00000007468) #29	TIRAP (ENSNLEG00000035636) #30	DCPS (ENSNLEG00000033119) #31	ST3GAL4 (ENSNLEG00000007472) #32	KIRREL3 (ENSNLEG00000007473) #33	ENSNLEG00000019250	ETS1 (ENSNLEG00000007477)	FLI1 (ENSNLEG00000007479)
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924.q #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT00730000112089
Cebidae	ANCESTRAL SPECIES		ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924.q #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT00730000112089
Marmoset	MODERN SPECIES	2	CCDC15 (ENSCJAG00000008183)	SLC37A2 (ENSCJAG00000008209)	TMEM218 (ENSCJAG00000044833)	PKNOX2 (ENSCJAG00000008279)	FEZ1 (ENSCJAG00000008336)	EI24 (ENSCJAG00000008390)	STT3A (ENSCJAG00000008400)	ACRV1 (ENSCJAG00000044455)	PATE1 (ENSCJAG00000008556)	ENSCJAG00000004329	PATE3 (ENSCJAG00000078069)	ENSCJAG00000071012	PATE4 (ENSCJAG00000070669)	ENSCJAG00000041856	PUS3 (ENSCJAG00000046645) #21	HYLS1 (ENSCJAG00000060937) #22	DDX25 (ENSCJAG00000008600) #23	VSIG10L2 (ENSCJAG00000042439)	CDON (ENSCJAG00000008669) #24	ENSCJAG00000044393	RPUSD4 (ENSCJAG00000079280) #26	FAM118B (ENSCJAG00000008701) #27	SRPRA (ENSCJAG00000008752) #28	FOXRED1 (ENSCJAG00000008850) #29	TIRAP (ENSCJAG00000008886) #30	DCPS (ENSCJAG00000008896) #31	ST3GAL4 (ENSCJAG00000008901) #32	KIRREL3 (ENSCJAG00000008996) #33	ETS1 (ENSCJAG00000042683)	ENSCJAG00000080255	FLI1 (ENSCJAG00000009034)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Glires	ANCESTRAL SPECIES	1	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Muroidea	ANCESTRAL SPECIES	52	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.b	ENSGT00940000163158.a.a.a.b	ENSGT00510000050363	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.a.a.b	ENSGT00510000050363	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050363	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Prairie vole	MODERN SPECIES	13	Fez1 (ENSMOCG00000009218)	Ei24 (ENSMOCG00000006270)	Stt3a (ENSMOCG00000017001)	Chek1 (ENSMOCG00000003709)	Acrv1 (ENSMOCG00000019968)	ENSMOCG00000018756	Pate13 (ENSMOCG00000017438)	ENSMOCG00000013726	Pate6 (ENSMOCG00000010226)	Pate7 (ENSMOCG00000005821)	Pate10 (ENSMOCG00000000729)	Pate1 (ENSMOCG00000021037)	ENSMOCG00000018699	Pate3 (ENSMOCG00000014788)	Pate4 (ENSMOCG00000014916)	Hyls1 (ENSMOCG00000013294) #22	Pus3 (ENSMOCG00000004901) #21	Ddx25 (ENSMOCG00000002484) #23	Gm1113 (ENSMOCG00000019686)	Cdon (ENSMOCG00000013628) #24	ENSMOCG00000007218	Rpusd4 (ENSMOCG00000000661) #26	ENSMOCG00000015597 #27	Srpr (ENSMOCG00000008311) #28	Foxred1 (ENSMOCG00000021906) #29	Tirap (ENSMOCG00000012995) #30	Dcps (ENSMOCG00000006978) #31	St3gal4 (ENSMOCG00000020666) #32	Kirrel3 (ENSMOCG00000001172) #33	Ets1 (ENSMOCG00000013935)	Fli1 (ENSMOCG00000000967)
Northern American deer mouse	MODERN SPECIES	20	ENSPEMG00000028506	ENSPEMG00000026343	ENSPEMG00000027854	ENSPEMG00000029505	ENSPEMG00000011339	Pate13 (ENSPEMG00000014238)	ENSPEMG00000031218	ENSPEMG00000012021	Pate6 (ENSPEMG00000011844)	Pate7 (ENSPEMG00000011589)	Pate1 (ENSPEMG00000011105)	ENSPEMG00000010488	Pate3 (ENSPEMG00000010421)	Pate4 (ENSPEMG00000010185)	Pus3 (ENSPEMG00000009602) #21	Hyls1 (ENSPEMG00000010075) #22	Ddx25 (ENSPEMG00000009334) #23	Gm1113 (ENSPEMG00000008734)	Cdon (ENSPEMG00000004669) #24	Rpusd4 (ENSPEMG00000000278) #26	Fam118b (ENSPEMG00000000058) #27	Srpr (ENSPEMG00000018279) #28	Foxred1 (ENSPEMG00000017785) #29	Tirap (ENSPEMG00000017279) #30	ENSPEMG00000016481 #31	St3gal4 (ENSPEMG00000015869) #32	Kirrel3 (ENSPEMG00000012376) #33	ENSPEMG00000027772	Ets1 (ENSPEMG00000009193)	Fli1 (ENSPEMG00000005402)	Kcnj1 (ENSPEMG00000001892)
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.a.a.b	ENSGT00510000050363	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Chinese hamster chok1gshd	MODERN SPECIES	189	Chek1 (ENSCGRG00001018583)	Acrv1 (ENSCGRG00001014068)	ENSCGRG00001004726	ENSCGRG00001012002	Pate9 (ENSCGRG00001022197)	Pate13 (ENSCGRG00001020068)	ENSCGRG00001017623	Pate6 (ENSCGRG00001019285)	ENSCGRG00001018035	Pate10 (ENSCGRG00001007452)	Pate1 (ENSCGRG00001001631)	ENSCGRG00001024234	Pate3 (ENSCGRG00001020653)	Pate4 (ENSCGRG00001018757)	Pus3 (ENSCGRG00001019842) #21	Hyls1 (ENSCGRG00001013942) #22	Ddx25 (ENSCGRG00001021499) #23	Gm1113 (ENSCGRG00001018198)	Cdon (ENSCGRG00001002126) #24	Rpusd4 (ENSCGRG00001024141) #26	Fam118b (ENSCGRG00001022035) #27	Srpr (ENSCGRG00001017670) #28	Foxred1 (ENSCGRG00001004784) #29	Tirap (ENSCGRG00001020991) #30	Dcps (ENSCGRG00001022394) #31	St3gal4 (ENSCGRG00001006222) #32	Kirrel3 (ENSCGRG00001015550) #33	Ets1 (ENSCGRG00001017138)	Fli1 (ENSCGRG00001007326)	Kcnj1 (ENSCGRG00001024296)	Kcnj5 (ENSCGRG00001023866)
Golden Hamster	MODERN SPECIES	457																ENSMAUG00000008515 #22
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.a.a.a	ENSGT00940000163158.a.a.a.b	ENSGT00510000050363	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Mus	ANCESTRAL SPECIES	4	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b.a	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.b.b	ENSGT00940000163158.a.a.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b.a	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001.a	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000162351	ENSGT00940000163158.a.b.a	ENSGT00940000163158.a.b.b	ENSGT00940000163158.a.a.b	ENSGT00940000163158.a.a.a.b.b	ENSGT00940000163158.a.a.a.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A.h	ENSGT01100000263629.b.a	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001.a	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936.a #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.b.a	ENSGT00940000163158.a.b.b	ENSGT00940000163158.a.a.b	ENSGT00940000163158.a.a.a.b.b	ENSGT00940000163158.a.a.a.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A.h	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001.a	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936.a #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Steppe mouse	MODERN SPECIES	3337														ENSMSIG00000008934	ENSMSIG00000008954	Hyls1 (ENSMSIG00000008977) #22	Pus3 (ENSMSIG00000008983) #21	Ddx25 (ENSMSIG00000009002) #23	ENSMSIG00000009021	Gm1113 (ENSMSIG00000009064)	Cdon (ENSMSIG00000009081) #24	Rpusd4 (ENSMSIG00000009157) #26	Fam118b (ENSMSIG00000009187) #27	Srpr (ENSMSIG00000009265) #28	Foxred1 (ENSMSIG00000009311) #29	Tirap (ENSMSIG00000009381) #30	Dcps (ENSMSIG00000009452) #31	St3gal4 (ENSMSIG00000009536) #32	Kirrel3 (ENSMSIG00000009576) #33	Ets1 (ENSMSIG00000009911)	ENSMSIG00000010061
spretus	MODERN SPECIES	18	Acrv1 (MGP_SPRETEiJ_G0033097)	Pate14 (MGP_SPRETEiJ_G0033096)	Pate8 (MGP_SPRETEiJ_G0033095)	Pate9 (MGP_SPRETEiJ_G0033094)	Pate11 (MGP_SPRETEiJ_G0033093)	MGP_SPRETEiJ_G0033092	MGP_SPRETEiJ_G0033091	Pate6 (MGP_SPRETEiJ_G0033090)	MGP_SPRETEiJ_G0033088	Pate7 (MGP_SPRETEiJ_G0033089)	Pate10 (MGP_SPRETEiJ_G0033087)	Pate1 (MGP_SPRETEiJ_G0033086)	Pate3 (MGP_SPRETEiJ_G0033085)	Pate4 (MGP_SPRETEiJ_G0033084)	Pate2 (MGP_SPRETEiJ_G0033083)	Hyls1 (MGP_SPRETEiJ_G0033082) #22	Pus3 (MGP_SPRETEiJ_G0033081) #21	Ddx25 (MGP_SPRETEiJ_G0033080) #23	Cdon (MGP_SPRETEiJ_G0033079) #24	Rpusd4 (MGP_SPRETEiJ_G0033078) #26	Fam118b (MGP_SPRETEiJ_G0033077) #27	Foxred1 (MGP_SPRETEiJ_G0033076) #29	Srpr (MGP_SPRETEiJ_G0033075) #28	Tirap (MGP_SPRETEiJ_G0033074) #30	Dcps (MGP_SPRETEiJ_G0033073) #31	St3gal4 (MGP_SPRETEiJ_G0033072) #32	Kirrel3 (MGP_SPRETEiJ_G0033071) #33	Ets1 (MGP_SPRETEiJ_G0033070)	Fli1 (MGP_SPRETEiJ_G0033069)	Kcnj1 (MGP_SPRETEiJ_G0033068)	Kcnj5 (MGP_SPRETEiJ_G0033067)
Mouse	MODERN SPECIES	18	Pate14 (ENSMUSG00000070313)	Pate8 (ENSMUSG00000091248)	Pate9 (ENSMUSG00000074448)	Pate11 (ENSMUSG00000090710)	Pate12 (ENSMUSG00000023093)	Gm5916 (ENSMUSG00000091411)	Pate13 (ENSMUSG00000078934)	Pate5 (ENSMUSG00000047980)	Pate6 (ENSMUSG00000032108)	Pate7 (ENSMUSG00000090738)	Pate10 (ENSMUSG00000091174)	Pate1 (ENSMUSG00000091215)	Pate3 (ENSMUSG00000094995)	Pate4 (ENSMUSG00000032099)	Pate2 (ENSMUSG00000074452)	Hyls1 (ENSMUSG00000050555) #22	Pus3 (ENSMUSG00000032103) #21	Ddx25 (ENSMUSG00000032101) #23	Gm1113 (ENSMUSG00000098590)	Cdon (ENSMUSG00000038119) #24	Rpusd4 (ENSMUSG00000032044) #26	Fam118b (ENSMUSG00000050471) #27	Foxred1 (ENSMUSG00000039048) #29	Srpr (ENSMUSG00000032042) #28	Tirap (ENSMUSG00000032041) #30	Dcps (ENSMUSG00000032040) #31	St3gal4 (ENSMUSG00000032038) #32	Kirrel3 (ENSMUSG00000032036) #33	Ets1 (ENSMUSG00000032035)	Fli1 (ENSMUSG00000016087)	Kcnj1 (ENSMUSG00000041248)
Ryukyu mouse	MODERN SPECIES	18	Stt3a (MGP_CAROLIEiJ_G0031973)	Chek1 (MGP_CAROLIEiJ_G0031972)	Acrv1 (MGP_CAROLIEiJ_G0031971)	Pate8 (MGP_CAROLIEiJ_G0031970)	MGP_CAROLIEiJ_G0031969	MGP_CAROLIEiJ_G0031968	MGP_CAROLIEiJ_G0031967	Pate6 (MGP_CAROLIEiJ_G0031966)	MGP_CAROLIEiJ_G0031964	Pate7 (MGP_CAROLIEiJ_G0031965)	Pate10 (MGP_CAROLIEiJ_G0031963)	Pate1 (MGP_CAROLIEiJ_G0031962)	Pate3 (MGP_CAROLIEiJ_G0031961)	MGP_CAROLIEiJ_G0031960	Pate2 (MGP_CAROLIEiJ_G0031959)	Hyls1 (MGP_CAROLIEiJ_G0031958) #22	Pus3 (MGP_CAROLIEiJ_G0031957) #21	Ddx25 (MGP_CAROLIEiJ_G0031956) #23	Cdon (MGP_CAROLIEiJ_G0031955) #24	Rpusd4 (MGP_CAROLIEiJ_G0031954) #26	Fam118b (MGP_CAROLIEiJ_G0031953) #27	Foxred1 (MGP_CAROLIEiJ_G0031952) #29	Srpr (MGP_CAROLIEiJ_G0031951) #28	Tirap (MGP_CAROLIEiJ_G0031950) #30	Dcps (MGP_CAROLIEiJ_G0031949) #31	St3gal4 (MGP_CAROLIEiJ_G0031948) #32	Kirrel3 (MGP_CAROLIEiJ_G0031947) #33	Ets1 (MGP_CAROLIEiJ_G0031946)	Fli1 (MGP_CAROLIEiJ_G0031945)	Kcnj1 (MGP_CAROLIEiJ_G0031944)	Kcnj5 (MGP_CAROLIEiJ_G0031943)
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0014838	Stt3a (MGP_PahariEiJ_G0014837)	Chek1 (MGP_PahariEiJ_G0014836)	Acrv1 (MGP_PahariEiJ_G0014835)	Pate14 (MGP_PahariEiJ_G0014834)	MGP_PahariEiJ_G0014833	MGP_PahariEiJ_G0014832	Pate6 (MGP_PahariEiJ_G0014831)	MGP_PahariEiJ_G0014829	Pate7 (MGP_PahariEiJ_G0014830)	MGP_PahariEiJ_G0014828	Pate1 (MGP_PahariEiJ_G0014827)	MGP_PahariEiJ_G0014826	Pate3 (MGP_PahariEiJ_G0014825)	MGP_PahariEiJ_G0014824	Hyls1 (MGP_PahariEiJ_G0014823) #22	Pus3 (MGP_PahariEiJ_G0014822) #21	Ddx25 (MGP_PahariEiJ_G0014821) #23	Cdon (MGP_PahariEiJ_G0014820) #24	Rpusd4 (MGP_PahariEiJ_G0014819) #26	Fam118b (MGP_PahariEiJ_G0014818) #27	Foxred1 (MGP_PahariEiJ_G0014817) #29	Srpr (MGP_PahariEiJ_G0014816) #28	Tirap (MGP_PahariEiJ_G0014815) #30	Dcps (MGP_PahariEiJ_G0014814) #31	St3gal4 (MGP_PahariEiJ_G0014813) #32	Kirrel3 (MGP_PahariEiJ_G0014812) #33	Ets1 (MGP_PahariEiJ_G0014811)	Fli1 (MGP_PahariEiJ_G0014810)	Kcnj1 (MGP_PahariEiJ_G0014809)	Kcnj5 (MGP_PahariEiJ_G0014808)
Rat	MODERN SPECIES	18	LOC100362690 (ENSRNOG00000063953)	LOC100360095 (ENSRNOG00000043131)	LOC100360049 (ENSRNOG00000066595)	Pate14 (ENSRNOG00000066040)	LOC103693040 (ENSRNOG00000030188)	Pate-f (ENSRNOG00000049588)	Pate5 (ENSRNOG00000024026)	LOC100361828 (ENSRNOG00000039445)	Pate7 (ENSRNOG00000042925)	LOC100359924 (ENSRNOG00000049218)	Pate1 (ENSRNOG00000049600)	Pate2 (ENSRNOG00000033981)	Pate3 (ENSRNOG00000046243)	Pate4 (ENSRNOG00000070114)	Pate4b (ENSRNOG00000065914)	Hyls1 (ENSRNOG00000012980) #22	Pus3 (ENSRNOG00000012994) #21	Ddx25 (ENSRNOG00000012260) #23	Vsig10l2 (ENSRNOG00000055680)	Cdon (ENSRNOG00000011789) #24	Rpusd4 (ENSRNOG00000011567) #26	Fam118b (ENSRNOG00000011543) #27	Srpra (ENSRNOG00000010543) #28	Foxred1 (ENSRNOG00000060379) #29	Tirap (ENSRNOG00000021420) #30	ENSRNOG00000069075	Dcps (ENSRNOG00000009850) #32	Kirrel3 (ENSRNOG00000009772) #33	Ets1 (ENSRNOG00000008941)	Fli1 (ENSRNOG00000008904)	Kcnj1 (ENSRNOG00000059005)
Upper Galilee mountains blind mole rat	MODERN SPECIES	424	Slc37a2 (ENSNGAG00000019054)	Tmem218 (ENSNGAG00000005428)	Pknox2 (ENSNGAG00000017813)	Fez1 (ENSNGAG00000011753)	Ei24 (ENSNGAG00000008005)	Stt3a (ENSNGAG00000001094)	Chek1 (ENSNGAG00000011330)	Acrv1 (ENSNGAG00000009796)	ENSNGAG00000007403	Pate7 (ENSNGAG00000012302)	Pate10 (ENSNGAG00000008596)	Pate1 (ENSNGAG00000006866)	ENSNGAG00000004667	Pate3 (ENSNGAG00000020278)	Pate13 (ENSNGAG00000018626)	Hyls1 (ENSNGAG00000014953) #22	Pus3 (ENSNGAG00000013868) #21	Ddx25 (ENSNGAG00000006246) #23	Gm1113 (ENSNGAG00000000664)	ENSNGAG00000019500	Cdon (ENSNGAG00000011006) #24	Rpusd4 (ENSNGAG00000020847) #26	Fam118b (ENSNGAG00000016309) #27	Srpr (ENSNGAG00000015686) #28	Foxred1 (ENSNGAG00000001740) #29	Tirap (ENSNGAG00000014783) #30	Dcps (ENSNGAG00000011482) #31	St3gal4 (ENSNGAG00000022937) #32	Kirrel3 (ENSNGAG00000022154) #33
Lesser Egyptian jerboa	MODERN SPECIES	120												Pate1 (ENSJJAG00000018220)	ENSJJAG00000018389	Pate3 (ENSJJAG00000010973)	Pus3 (ENSJJAG00000011306) #21	Hyls1 (ENSJJAG00000011897) #22	Ddx25 (ENSJJAG00000012739) #23	Gm1113 (ENSJJAG00000013983)	Cdon (ENSJJAG00000016206) #24	Rpusd4 (ENSJJAG00000018673) #26	Fam118b (ENSJJAG00000020046) #27	Srpr (ENSJJAG00000020272) #28	Foxred1 (ENSJJAG00000018828) #29	Tirap (ENSJJAG00000020261) #30	Dcps (ENSJJAG00000020913) #31	St3gal4 (ENSJJAG00000021810) #32	Kirrel3 (ENSJJAG00000000302) #33	Ets1 (ENSJJAG00000011471)	Fli1 (ENSJJAG00000014106)	ENSJJAG00000017124	Kcnj1 (ENSJJAG00000017169)
Kangaroo rat	MODERN SPECIES	329	Robo4 (ENSDORG00000011561)	Hepacam (ENSDORG00000013112)	Ccdc15 (ENSDORG00000004976)	Slc37a2 (ENSDORG00000013140)	Tmem218 (ENSDORG00000028050)	Pknox2 (ENSDORG00000008635)	Fez1 (ENSDORG00000008636)	ENSDORG00000010644	Stt3a (ENSDORG00000013036)	Chek1 (ENSDORG00000013040)	Acrv1 (ENSDORG00000004316)	Pate10 (ENSDORG00000025642)	Pate1 (ENSDORG00000009056)	ENSDORG00000023962	Pate3 (ENSDORG00000028774)	Hyls1 (ENSDORG00000026551) #22	Pus3 (ENSDORG00000001819) #21	Ddx25 (ENSDORG00000001822) #23	Gm1113 (ENSDORG00000026304)	Cdon (ENSDORG00000001825) #24	Rpusd4 (ENSDORG00000016717) #26	ENSDORG00000016718 #27	Srpr (ENSDORG00000016719) #28	ENSDORG00000016720 #29	Dcps (ENSDORG00000000696) #31	St3gal4 (ENSDORG00000003992) #32	Kirrel3 (ENSDORG00000003993) #33	ENSDORG00000027604	Ets1 (ENSDORG00000007930)	Fli1 (ENSDORG00000025430)	Kcnj1 (ENSDORG00000030107)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Hystricomorpha	ANCESTRAL SPECIES	58	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Hystricomorpha_a	ANCESTRAL SPECIES	63	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	77	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Degu	DUPLICATION
Degu	MODERN SPECIES	177	TMEM218 (ENSODEG00000003550)	ENSODEG00000018922	PKNOX2 (ENSODEG00000003565)	FEZ1 (ENSODEG00000003678)	ENSODEG00000003729	STT3A (ENSODEG00000003877)	ENSODEG00000003985	ACRV1 (ENSODEG00000004018)	ENSODEG00000004060	ENSODEG00000004035	PATE1 (ENSODEG00000004044)	PATE2 (ENSODEG00000004054)	ENSODEG00000004259	PATE3 (ENSODEG00000004269)	PUS3 (ENSODEG00000004280) #21	ENSODEG00000019020 #22	DDX25 (ENSODEG00000004301) #23	VSIG10L2 (ENSODEG00000004355)	CDON (ENSODEG00000004426) #24	RPUSD4 (ENSODEG00000004577) #26	FAM118B (ENSODEG00000004700) #27	SRPRA (ENSODEG00000004730) #28	FOXRED1 (ENSODEG00000004744) #29	TIRAP (ENSODEG00000003079) #30	DCPS (ENSODEG00000003139) #31	ST3GAL4 (ENSODEG00000003168) #32	KIRREL3 (ENSODEG00000003375) #33	ETS1 (ENSODEG00000003638)	FLI1 (ENSODEG00000003815)	KCNJ1 (ENSODEG00000003852)	ENSODEG00000003913
Degu	MODERN SPECIES	92	ENSODEG00000006793	DLEU7 (ENSODEG00000006775)	ENSODEG00000006650	ENSODEG00000006325	ENSODEG00000019247	TRIM13 (ENSODEG00000005624)	ENSODEG00000006101	ENSODEG00000005796	ENSODEG00000006427	EBPL (ENSODEG00000006022)	RCBTB1 (ENSODEG00000009239)	SETDB2 (ENSODEG00000005653)	CAB39L (ENSODEG00000005405)	CDADC1 (ENSODEG00000005355)	MLNR (ENSODEG00000005947)	ENSODEG00000019344 #22	FNDC3A (ENSODEG00000005882)	ENSODEG00000005498	CYSLTR2 (ENSODEG00000005345)	ENSODEG00000019363	ENSODEG00000006804	RCBTB2 (ENSODEG00000007840)	LPAR6 (ENSODEG00000019536)	RB1 (ENSODEG00000007075)	ENSODEG00000005765	ENSODEG00000006829	NUDT15 (ENSODEG00000006598)	ENSODEG00000006404	ENSODEG00000005873	ENSODEG00000019388	ENSODEG00000005886
Long-tailed chinchilla	MODERN SPECIES	119	CCDC15 (ENSCLAG00000015010)	SLC37A2 (ENSCLAG00000017318)	TMEM218 (ENSCLAG00000015737)	PKNOX2 (ENSCLAG00000014511)	FEZ1 (ENSCLAG00000013933)	ENSCLAG00000017926	EI24 (ENSCLAG00000015350)	STT3A (ENSCLAG00000015037)	ENSCLAG00000014393	ACRV1 (ENSCLAG00000015258)	ENSCLAG00000014886	PATE1 (ENSCLAG00000017379)	PATE2 (ENSCLAG00000014213)	PATE3 (ENSCLAG00000016189)	ENSCLAG00000013836	HYLS1 (ENSCLAG00000015931) #22	PUS3 (ENSCLAG00000014947) #21	DDX25 (ENSCLAG00000015793) #23	VSIG10L2 (ENSCLAG00000015314)	CDON (ENSCLAG00000017248) #24	RPUSD4 (ENSCLAG00000016553) #26	FAM118B (ENSCLAG00000016883) #27	SRPRA (ENSCLAG00000016839) #28	ENSCLAG00000013314 #29	ENSCLAG00000014019	TIRAP (ENSCLAG00000014439) #30	DCPS (ENSCLAG00000015708) #31	ST3GAL4 (ENSCLAG00000016327) #32	KIRREL3 (ENSCLAG00000016134) #33	ENSCLAG00000015617	ETS1 (ENSCLAG00000016564)
Guinea pig	MODERN SPECIES	19	HEPACAM (ENSCPOG00000007623)	ENSCPOG00000037998	SLC37A2 (ENSCPOG00000004719)	TMEM218 (ENSCPOG00000040775)	PKNOX2 (ENSCPOG00000034080)	FEZ1 (ENSCPOG00000003163)	EI24 (ENSCPOG00000007272)	STT3A (ENSCPOG00000007283)	ENSCPOG00000026175	ACRV1 (ENSCPOG00000007297)	ENSCPOG00000036264	ENSCPOG00000031135	PATE1 (ENSCPOG00000030186)	PATE2 (ENSCPOG00000012758)	PATE3 (ENSCPOG00000037646)	HYLS1 (ENSCPOG00000011455) #22	PUS3 (ENSCPOG00000032587) #21	DDX25 (ENSCPOG00000011456) #23	VSIG10L2 (ENSCPOG00000033995)	CDON (ENSCPOG00000005460) #24	RPUSD4 (ENSCPOG00000014971) #26	FAM118B (ENSCPOG00000014974) #27	SRPRA (ENSCPOG00000014976) #28	FOXRED1 (ENSCPOG00000014979) #29	TIRAP (ENSCPOG00000005834) #30	DCPS (ENSCPOG00000014358) #31	ST3GAL4 (ENSCPOG00000005968) #32	KIRREL3 (ENSCPOG00000014982) #33	ETS1 (ENSCPOG00000039277)	FLI1 (ENSCPOG00000030795)	KCNJ1 (ENSCPOG00000020661)
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000032791	CLMP (ENSHGLG00000001841)	ENSHGLG00000001884	BSX (ENSHGLG00000042535)	JHY (ENSHGLG00000001981)	CRTAM (ENSHGLG00000002032)	UBASH3B (ENSHGLG00000001126)	ENSHGLG00000034719	ENSHGLG00000045413	ENSHGLG00000037002	SORL1 (ENSHGLG00000001265)	SC5D (ENSHGLG00000044088)	TECTA (ENSHGLG00000001489)	TBCEL (ENSHGLG00000040222)	GRIK4 (ENSHGLG00000001757)	HYLS1 (ENSHGLG00000032168) #22	ENSHGLG00000000565 #21	DDX25 (ENSHGLG00000000748) #23	CDON (ENSHGLG00000001508) #24	ENSHGLG00000041999	RPUSD4 (ENSHGLG00000002285) #26	FAM118B (ENSHGLG00000000409) #27	ENSHGLG00000001597 #28	FOXRED1 (ENSHGLG00000044040) #29	TIRAP (ENSHGLG00000032073) #30	DCPS (ENSHGLG00000041279) #31	ST3GAL4 (ENSHGLG00000046104) #32	KIRREL3 (ENSHGLG00000006857) #33	ETS1 (ENSHGLG00000009624)	FLI1 (ENSHGLG00000001522)	KCNJ1 (ENSHGLG00000038536)
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.c	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Marmotini	ANCESTRAL SPECIES	20	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Marmotini_b	ANCESTRAL SPECIES	75	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT01100000266206	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Squirrel	MODERN SPECIES	172										ENSSTOG00000032564	ENSSTOG00000025629	PATE1 (ENSSTOG00000014544)	PATE2 (ENSSTOG00000030211)	PATE3 (ENSSTOG00000027450)	ENSSTOG00000026387	HYLS1 (ENSSTOG00000003743) #22	PUS3 (ENSSTOG00000003721) #21	DDX25 (ENSSTOG00000003749) #23	VSIG10L2 (ENSSTOG00000033011)	CDON (ENSSTOG00000003762) #24	ENSSTOG00000004754	ENSSTOG00000028178	RPUSD4 (ENSSTOG00000025280) #26	FAM118B (ENSSTOG00000009886) #27	SRPRA (ENSSTOG00000009897) #28	FOXRED1 (ENSSTOG00000009915) #29	TIRAP (ENSSTOG00000009928) #30	DCPS (ENSSTOG00000009930) #31	ST3GAL4 (ENSSTOG00000020753) #32	KIRREL3 (ENSSTOG00000009951) #33	ETS1 (ENSSTOG00000009694)
Arctic ground squirrel	MODERN SPECIES	304	FEZ1 (ENSUPAG00010023824)	EI24 (ENSUPAG00010023825)	STT3A (ENSUPAG00010023827)	CHEK1 (ENSUPAG00010023830)	ACRV1 (ENSUPAG00010023832)	ENSUPAG00010023834	ENSUPAG00010023835	ENSUPAG00010023837	ENSUPAG00010023838	ENSUPAG00010023839	ENSUPAG00010023840	PATE1 (ENSUPAG00010023842)	PATE2 (ENSUPAG00010023843)	PATE3 (ENSUPAG00010023845)	PUS3 (ENSUPAG00010023850) #21	HYLS1 (ENSUPAG00010023852) #22	DDX25 (ENSUPAG00010023854) #23	VSIG10L2 (ENSUPAG00010023855)	CDON (ENSUPAG00010023856) #24	ENSUPAG00010023857	ENSUPAG00010023858	RPUSD4 (ENSUPAG00010023860) #26	FAM118B (ENSUPAG00010023861) #27	SRPRA (ENSUPAG00010023863) #28	FOXRED1 (ENSUPAG00010023864) #29	TIRAP (ENSUPAG00010023865) #30	DCPS (ENSUPAG00010023866) #31	ST3GAL4 (ENSUPAG00010023867) #32	KIRREL3 (ENSUPAG00010023869) #33
Alpin marmot	MODERN SPECIES	58	FEZ1 (ENSMMMG00000001000)	EI24 (ENSMMMG00000001036)	STT3A (ENSMMMG00000001086)	CHEK1 (ENSMMMG00000001124)	ACRV1 (ENSMMMG00000001181)	ENSMMMG00000001194	ENSMMMG00000001205	ENSMMMG00000001219	ENSMMMG00000001245	ENSMMMG00000001253	ENSMMMG00000001275	PATE1 (ENSMMMG00000001290)	PATE2 (ENSMMMG00000001297)	PATE3 (ENSMMMG00000001314)	PUS3 (ENSMMMG00000001366) #21	HYLS1 (ENSMMMG00000001378) #22	DDX25 (ENSMMMG00000001387) #23	VSIG10L2 (ENSMMMG00000001415)	CDON (ENSMMMG00000001450) #24	RPUSD4 (ENSMMMG00000001550) #26	FAM118B (ENSMMMG00000001569) #27	SRPRA (ENSMMMG00000001623) #28	FOXRED1 (ENSMMMG00000001639) #29	TIRAP (ENSMMMG00000001698) #30	ENSMMMG00000001701 #31	ST3GAL4 (ENSMMMG00000001723) #32	KIRREL3 (ENSMMMG00000001768) #33	ETS1 (ENSMMMG00000001971)	FLI1 (ENSMMMG00000002046)	KCNJ1 (ENSMMMG00000002066)	KCNJ5 (ENSMMMG00000002079)
Eurasian red squirrel	MODERN SPECIES	2	EI24 (ENSSVLG00005017492)	ENSSVLG00005017870	ENSSVLG00005018204	ACRV1 (ENSSVLG00005018355)	ENSSVLG00005018441	ENSSVLG00005018489	ENSSVLG00005018542	ENSSVLG00005018577	ENSSVLG00005018628	ENSSVLG00005018662	ENSSVLG00005018759	PATE1 (ENSSVLG00005018811)	PATE2 (ENSSVLG00005018933)	PATE3 (ENSSVLG00005019015)	PUS3 (ENSSVLG00005019054) #21	HYLS1 (ENSSVLG00005019099) #22	DDX25 (ENSSVLG00005019148) #23	ENSSVLG00005019300	ENSSVLG00005019361	VSIG10L2 (ENSSVLG00005019476)	CDON (ENSSVLG00005019551) #24	ENSSVLG00005019624	RPUSD4 (ENSSVLG00005019658) #26	FAM118B (ENSSVLG00005019758) #27	SRPRA (ENSSVLG00005019885) #28	FOXRED1 (ENSSVLG00005020162) #29	TIRAP (ENSSVLG00005020272) #30	DCPS (ENSSVLG00005020312) #31	ST3GAL4 (ENSSVLG00005020349) #32	KIRREL3 (ENSSVLG00005020503) #33	ETS1 (ENSSVLG00005020912)
Lagomorpha	ANCESTRAL SPECIES	59	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Rabbit	MODERN SPECIES		STT3A (ENSOCUG00000014703)	ENSOCUG00000037176	ACRV1 (ENSOCUG00000017103)	ENSOCUG00000027736	ENSOCUG00000035040	ENSOCUG00000037379	ENSOCUG00000031254	ENSOCUG00000038989	ENSOCUG00000033341	PATE1 (ENSOCUG00000035330)	PATE2 (ENSOCUG00000012321)	ENSOCUG00000030804	PATE3 (ENSOCUG00000037052)	ENSOCUG00000035156	ENSOCUG00000030700	HYLS1 (ENSOCUG00000004473) #22	PUS3 (ENSOCUG00000004468) #21	DDX25 (ENSOCUG00000004476) #23	CDON (ENSOCUG00000012610) #24	RPUSD4 (ENSOCUG00000017039) #26	FAM118B (ENSOCUG00000017049) #27	SRPRA (ENSOCUG00000017057) #28	FOXRED1 (ENSOCUG00000026364) #29	TIRAP (ENSOCUG00000012519) #30	ENSOCUG00000012520 #31	ST3GAL4 (ENSOCUG00000012528) #32	KIRREL3 (ENSOCUG00000012544) #33	c-ets-1 (ENSOCUG00000010492)	FLI1 (ENSOCUG00000013415)	KCNJ1 (ENSOCUG00000013422)	KCNJ5 (ENSOCUG00000015565)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Suina	ANCESTRAL SPECIES	5	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363	ENSGT00510000048956	ENSGT00690000102487	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Pig	MODERN SPECIES	17	TMEM218 (ENSSSCG00000062098)	PKNOX2 (ENSSSCG00000015211)	FEZ1 (ENSSSCG00000015212)	EI24 (ENSSSCG00000015213)	STT3A (ENSSSCG00000015214)	CHEK1 (ENSSSCG00000015215)	ACRV1 (ENSSSCG00000015216)	ENSSSCG00000015217	ENSSSCG00000046169	ENSSSCG00000053223	ENSSSCG00000037332	PATE1 (ENSSSCG00000040952)	ENSSSCG00000033649	PATE2 (ENSSSCG00000038721)	PATE3 (ENSSSCG00000015221)	HYLS1 (ENSSSCG00000024913) #22	PUS3 (ENSSSCG00000015222) #21	DDX25 (ENSSSCG00000015223) #23	VSIG10L2 (ENSSSCG00000050125)	CDON (ENSSSCG00000022504) #24	RPUSD4 (ENSSSCG00000015233) #26	FAM118B (ENSSSCG00000025806) #27	SRPRA (ENSSSCG00000015227) #28	FOXRED1 (ENSSSCG00000030017) #29	TIRAP (ENSSSCG00000022413) #30	DCPS (ENSSSCG00000015231) #31	ST3GAL4 (ENSSSCG00000015232) #32	KIRREL3 (ENSSSCG00000015234) #33	ENSSSCG00000047091	ETS1 (ENSSSCG00000015235)	FLI1 (ENSSSCG00000015237)
Chacoan peccary	MODERN SPECIES	80	PKNOX2 (ENSCWAG00000001641)	FEZ1 (ENSCWAG00000001627)	EI24 (ENSCWAG00000001557)	STT3A (ENSCWAG00000001516)	ENSCWAG00000001499	CHEK1 (ENSCWAG00000001382)	ACRV1 (ENSCWAG00000001330)	ENSCWAG00000001318	ENSCWAG00000001305	ENSCWAG00000001293	ENSCWAG00000001278	ENSCWAG00000001232	PATE2 (ENSCWAG00000001209)	PATE3 (ENSCWAG00000001188)	PUS3 (ENSCWAG00000001172) #21	HYLS1 (ENSCWAG00000001160) #22	DDX25 (ENSCWAG00000001123) #23	VSIG10L2 (ENSCWAG00000001081)	CDON (ENSCWAG00000001032) #24	RPUSD4 (ENSCWAG00000001010) #26	FAM118B (ENSCWAG00000000994) #27	SRPRA (ENSCWAG00000000935) #28	FOXRED1 (ENSCWAG00000000884) #29	TIRAP (ENSCWAG00000000862) #30	DCPS (ENSCWAG00000000827) #31	ST3GAL4 (ENSCWAG00000000759) #32	KIRREL3 (ENSCWAG00000000605) #33	ETS1 (ENSCWAG00000000482)	FLI1 (ENSCWAG00000000388)	KCNJ1 (ENSCWAG00000000352)	KCNJ5 (ENSCWAG00000000292)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Artiodactyla_b	ANCESTRAL SPECIES	29	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b.a.a.a	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Narwhal	MODERN SPECIES	314	SLC37A2 (ENSMMNG00015016542)	TMEM218 (ENSMMNG00015016479)	PKNOX2 (ENSMMNG00015016433)	FEZ1 (ENSMMNG00015016381)	EI24 (ENSMMNG00015016319)	STT3A (ENSMMNG00015016232)	CHEK1 (ENSMMNG00015016000)	ACRV1 (ENSMMNG00015015895)	ENSMMNG00015015852	ENSMMNG00015015810	ENSMMNG00015015778	ENSMMNG00015021185	ENSMMNG00015021176	PATE2 (ENSMMNG00015021167)	PATE3 (ENSMMNG00015021157)	HYLS1 (ENSMMNG00015021147) #22	PUS3 (ENSMMNG00015021137) #21	DDX25 (ENSMMNG00015021121) #23	CDON (ENSMMNG00015021097) #24	RPUSD4 (ENSMMNG00015021071) #26	FAM118B (ENSMMNG00015021031) #27	SRPRA (ENSMMNG00015020963) #28	FOXRED1 (ENSMMNG00015020867) #29	TIRAP (ENSMMNG00015020849) #30	DCPS (ENSMMNG00015020817) #31	KIRREL3 (ENSMMNG00015020744) #33	ETS1 (ENSMMNG00015020697)	FLI1 (ENSMMNG00015020645)	KCNJ1 (ENSMMNG00015020626)	KCNJ5 (ENSMMNG00015020608)	ARHGAP32 (ENSMMNG00015020492)
Beluga whale	MODERN SPECIES	63	TMEM218 (ENSDLEG00000015416)	PKNOX2 (ENSDLEG00000015412)	FEZ1 (ENSDLEG00000019688)	EI24 (ENSDLEG00000019683)	STT3A (ENSDLEG00000019670)	CHEK1 (ENSDLEG00000019623)	ACRV1 (ENSDLEG00000019608)	ENSDLEG00000019602	ENSDLEG00000019598	ENSDLEG00000019593	ENSDLEG00000019586	ENSDLEG00000019584	ENSDLEG00000019580	ENSDLEG00000019572	PATE2 (ENSDLEG00000019569)	HYLS1 (ENSDLEG00000019564) #22	PUS3 (ENSDLEG00000019562) #21	DDX25 (ENSDLEG00000019552) #23	CDON (ENSDLEG00000019538) #24	RPUSD4 (ENSDLEG00000019532) #26	FAM118B (ENSDLEG00000019519) #27	SRPRA (ENSDLEG00000019512) #28	FOXRED1 (ENSDLEG00000019504) #29	TIRAP (ENSDLEG00000019501) #30	DCPS (ENSDLEG00000019498) #31	ST3GAL4 (ENSDLEG00000019489) #32	KIRREL3 (ENSDLEG00000019482) #33	ETS1 (ENSDLEG00000019475)	FLI1 (ENSDLEG00000019461)	KCNJ1 (ENSDLEG00000019453)	KCNJ5 (ENSDLEG00000019451)
Vaquita	MODERN SPECIES	19	STT3A (ENSPSNG00000012919)	CHEK1 (ENSPSNG00000012682)	ACRV1 (ENSPSNG00000012592)	ENSPSNG00000012546	ENSPSNG00000012500	ENSPSNG00000012397	ENSPSNG00000012359	ENSPSNG00000012304	ENSPSNG00000012266	PATE1 (ENSPSNG00000012136)	ENSPSNG00000012061	PATE2 (ENSPSNG00000012006)	PATE3 (ENSPSNG00000011941)	ENSPSNG00000011921	PUS3 (ENSPSNG00000011848) #21	HYLS1 (ENSPSNG00000011819) #22	DDX25 (ENSPSNG00000011674) #23	CDON (ENSPSNG00000011596) #24	RPUSD4 (ENSPSNG00000011529) #26	FAM118B (ENSPSNG00000011429) #27	SRPRA (ENSPSNG00000011327) #28	FOXRED1 (ENSPSNG00000011165) #29	TIRAP (ENSPSNG00000011081) #30	DCPS (ENSPSNG00000010956) #31	ST3GAL4 (ENSPSNG00000010919) #32	KIRREL3 (ENSPSNG00000010533) #33	ETS1 (ENSPSNG00000010028)	FLI1 (ENSPSNG00000009843)	KCNJ1 (ENSPSNG00000004450)	ENSPSNG00000004432	KCNJ5 (ENSPSNG00000004414)
Dolphin	MODERN SPECIES	2644															PUS3 (ENSTTRG00000012167) #21	HYLS1 (ENSTTRG00000012181) #22	DDX25 (ENSTTRG00000012183) #23	CDON (ENSTTRG00000012194) #24
Sperm whale	MODERN SPECIES	7	CCDC15 (ENSPCTG00005015024)	FEZ1 (ENSPCTG00005014954)	EI24 (ENSPCTG00005014514)	STT3A (ENSPCTG00005014137)	ACRV1 (ENSPCTG00005013952)	ENSPCTG00005013844	ENSPCTG00005013741	ENSPCTG00005013665	ENSPCTG00005013624	ENSPCTG00005013562	ENSPCTG00005013504	PATE1 (ENSPCTG00005013344)	ENSPCTG00005013266	PATE2 (ENSPCTG00005013138)	PATE3 (ENSPCTG00005013066)	HYLS1 (ENSPCTG00005013030) #22	PUS3 (ENSPCTG00005013004) #21	DDX25 (ENSPCTG00005012844) #23	CDON (ENSPCTG00005012699) #24	RPUSD4 (ENSPCTG00005012659) #26	FAM118B (ENSPCTG00005012566) #27	SRPRA (ENSPCTG00005012480) #28	FOXRED1 (ENSPCTG00005012344) #29	TIRAP (ENSPCTG00005012287) #30	ENSPCTG00005012241	DCPS (ENSPCTG00005012123) #31	ST3GAL4 (ENSPCTG00005011862) #32	KIRREL3 (ENSPCTG00005011347) #33	ETS1 (ENSPCTG00005011168)	FLI1 (ENSPCTG00005010918)	KCNJ1 (ENSPCTG00005010856)
Blue whale	MODERN SPECIES	19	PKNOX2 (ENSBMSG00010011900)	FEZ1 (ENSBMSG00010011893)	ENSBMSG00010011882	STT3A (ENSBMSG00010011841)	CHEK1 (ENSBMSG00010011794)	ACRV1 (ENSBMSG00010011774)	ENSBMSG00010011767	ENSBMSG00010011760	ENSBMSG00010011750	ENSBMSG00010011743	ENSBMSG00010011731	PATE1 (ENSBMSG00010011720)	ENSBMSG00010011709	PATE2 (ENSBMSG00010011697)	PATE3 (ENSBMSG00010011685)	HYLS1 (ENSBMSG00010011675) #22	PUS3 (ENSBMSG00010011671) #21	DDX25 (ENSBMSG00010011653) #23	CDON (ENSBMSG00010011634) #24	FAM118B (ENSBMSG00010011597) #27	SRPRA (ENSBMSG00010011589) #28	FOXRED1 (ENSBMSG00010011567) #29	TIRAP (ENSBMSG00010011550) #30	ENSBMSG00010011535	DCPS (ENSBMSG00010011519) #31	ST3GAL4 (ENSBMSG00010011492) #32	KIRREL3 (ENSBMSG00010011431) #33	ETS1 (ENSBMSG00010011360)	FLI1 (ENSBMSG00010011314)	KCNJ1 (ENSBMSG00010011296)	KCNJ5 (ENSBMSG00010011288)
Pecora	ANCESTRAL SPECIES	13	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	152														ENSCHYG00000014914	ENSCHYG00000014862 #21	ENSCHYG00000014811 #22
Yarkand deer	MODERN SPECIES	151														ENSCHYG00000014531	ENSCHYG00000014506 #21	ENSCHYG00000014475 #22
Percora_a	ANCESTRAL SPECIES	16	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Bovidae	ANCESTRAL SPECIES	16	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Caprinae	ANCESTRAL SPECIES	29	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Rambouillet Sheep	MODERN SPECIES	13	SLC37A2 (ENSOARG00020016564)	TMEM218 (ENSOARG00020016756)	PKNOX2 (ENSOARG00020016792)	FEZ1 (ENSOARG00020016876)	EI24 (ENSOARG00020016968)	STT3A (ENSOARG00020017209)	CHEK1 (ENSOARG00020017711)	ACRV1 (ENSOARG00020017966)	SOLD1 (ENSOARG00020018075)	ENSOARG00020018156	ENSOARG00020006327	ENSOARG00020006351	PATE1 (ENSOARG00020006385)	PATE2 (ENSOARG00020006399)	PATE3 (ENSOARG00020006485)	HYLS1 (ENSOARG00020006556) #22	PUS3 (ENSOARG00020006619) #21	DDX25 (ENSOARG00020006666) #23	VSIG10L2 (ENSOARG00020006806)	CDON (ENSOARG00020006906) #24	RPUSD4 (ENSOARG00020007077) #26	FAM118B (ENSOARG00020007129) #27	SRPRA (ENSOARG00020007247) #28	FOXRED1 (ENSOARG00020007489) #29	TIRAP (ENSOARG00020007608) #30	DCPS (ENSOARG00020007638) #31	ST3GAL4 (ENSOARG00020007660) #32	KIRREL3 (ENSOARG00020007855) #33	ETS1 (ENSOARG00020008513)	FLI1 (ENSOARG00020008905)	KCNJ1 (ENSOARG00020009219)
Goat	MODERN SPECIES	21	SLC37A2 (ENSCHIG00000013351)	TMEM218 (ENSCHIG00000025499)	PKNOX2 (ENSCHIG00000021259)	FEZ1 (ENSCHIG00000015748)	EI24 (ENSCHIG00000020494)	STT3A (ENSCHIG00000024693)	CHEK1 (ENSCHIG00000025345)	ACRV1 (ENSCHIG00000023273)	SOLD1 (ENSCHIG00000018973)	ENSCHIG00000010713	ENSCHIG00000022868	PATE1 (ENSCHIG00000010129)	PATE2 (ENSCHIG00000021353)	PATE3 (ENSCHIG00000010781)	PUS3 (ENSCHIG00000012260) #21	HYLS1 (ENSCHIG00000024898) #22	ENSCHIG00000014324 #23	CDON (ENSCHIG00000006678) #24	RPUSD4 (ENSCHIG00000009975) #26	FAM118B (ENSCHIG00000016177) #27	SRPRA (ENSCHIG00000012423) #28	FOXRED1 (ENSCHIG00000017154) #29	TIRAP (ENSCHIG00000025937) #30	DCPS (ENSCHIG00000023271) #31	ST3GAL4 (ENSCHIG00000012632) #32	KIRREL3 (ENSCHIG00000003900) #33	ETS1 (ENSCHIG00000015805)	FLI1 (ENSCHIG00000015640)	KCNJ1 (ENSCHIG00000016247)	KCNJ5 (ENSCHIG00000012884)	ENSCHIG00000021366
Bovinae	ANCESTRAL SPECIES	27	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00960000189795	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Bos	ANCESTRAL SPECIES	11	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00960000189795	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b.a.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.a	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00960000189795	ENSGT00940000159519	ENSGT00940000158261
Cow	MODERN SPECIES	21	TMEM218 (ENSBTAG00000022382)	PKNOX2 (ENSBTAG00000000052)	FEZ1 (ENSBTAG00000009124)	EI24 (ENSBTAG00000007202)	STT3A (ENSBTAG00000007203)	CHEK1 (ENSBTAG00000017582)	ACRV1 (ENSBTAG00000033384)	SSLP1 (ENSBTAG00000052794)	ENSBTAG00000023301	ENSBTAG00000051470	ENSBTAG00000049707	PATE1 (ENSBTAG00000052688)	PATE2 (ENSBTAG00000033375)	PATE3 (ENSBTAG00000050639)	ENSBTAG00000033377	HYLS1 (ENSBTAG00000010859) #22	PUS3 (ENSBTAG00000014339) #21	DDX25 (ENSBTAG00000004266) #23	CDON (ENSBTAG00000009315) #24	RPUSD4 (ENSBTAG00000020900) #26	FAM118B (ENSBTAG00000012169) #27	SRPRA (ENSBTAG00000014105) #28	FOXRED1 (ENSBTAG00000014122) #29	TIRAP (ENSBTAG00000021504) #30	DCPS (ENSBTAG00000002879) #31	ST3GAL4 (ENSBTAG00000016506) #32	KIRREL3 (ENSBTAG00000006804) #33	ENSBTAG00000050013	ENSBTAG00000052770	ETS1 (ENSBTAG00000002341)	FLI1 (ENSBTAG00000008283)
Hybrid Bos Indicus	MODERN SPECIES	21	FEZ1 (ENSBIXG00005026442)	EI24 (ENSBIXG00005026519)	STT3A (ENSBIXG00005026602)	CHEK1 (ENSBIXG00005026800)	ENSBIXG00005026845	ACRV1 (ENSBIXG00005026890)	ENSBIXG00005026914	ENSBIXG00005026920	ENSBIXG00005026943	PATE1 (ENSBIXG00005026965)	ENSBIXG00005007582	PATE2 (ENSBIXG00005027014)	PATE3 (ENSBIXG00005004634)	ENSBIXG00005027038	PUS3 (ENSBIXG00005027045) #21	HYLS1 (ENSBIXG00005027065) #22	DDX25 (ENSBIXG00005027130) #23	VSIG10L2 (ENSBIXG00005027178)	CDON (ENSBIXG00005027248) #24	RPUSD4 (ENSBIXG00005005612) #26	FAM118B (ENSBIXG00005027365) #27	SRPRA (ENSBIXG00005007778) #28	FOXRED1 (ENSBIXG00005027555) #29	TIRAP (ENSBIXG00005027602) #30	ENSBIXG00005004780 #32	KIRREL3 (ENSBIXG00005028061) #33	ENSBIXG00005028111	ETS1 (ENSBIXG00005028250)	ENSBIXG00005028285	FLI1 (ENSBIXG00005007790)	KCNJ1 (ENSBIXG00005028469)
Bos_a	ANCESTRAL SPECIES	45	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00390000012351	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Wild yak	MODERN SPECIES	2291									ENSBMUG00000000158	ENSBMUG00000000131	ENSBMUG00000026423	PATE2 (ENSBMUG00000026418)	PATE3 (ENSBMUG00000026414)	ENSBMUG00000026411	PUS3 (ENSBMUG00000026409) #21	HYLS1 (ENSBMUG00000026410) #22
Domestic yak	MODERN SPECIES	21	SLC37A2 (ENSBGRG00000021440)	PKNOX2 (ENSBGRG00000021171)	FEZ1 (ENSBGRG00000021032)	ENSBGRG00000020849	STT3A (ENSBGRG00000020635)	CHEK1 (ENSBGRG00000020448)	ACRV1 (ENSBGRG00000020380)	ENSBGRG00000020362	ENSBGRG00000020333	ENSBGRG00000020246	ENSBGRG00000020215	PATE1 (ENSBGRG00000020170)	PATE2 (ENSBGRG00000020078)	PATE3 (ENSBGRG00000020018)	PUS3 (ENSBGRG00000019983) #21	HYLS1 (ENSBGRG00000019957) #22	DDX25 (ENSBGRG00000019635) #23	VSIG10L2 (ENSBGRG00000019463)	CDON (ENSBGRG00000019029) #24	RPUSD4 (ENSBGRG00000018879) #26	FAM118B (ENSBGRG00000018799) #27	SRPRA (ENSBGRG00000018404) #28	FOXRED1 (ENSBGRG00000018192) #29	TIRAP (ENSBGRG00000018128) #30	DCPS (ENSBGRG00000018077) #31	ST3GAL4 (ENSBGRG00000017901) #32	KIRREL3 (ENSBGRG00000017244) #33	KATNBL1 (ENSBGRG00000024952)	ETS1 (ENSBGRG00000024615)	FLI1 (ENSBGRG00000024331)	KCNJ1 (ENSBGRG00000024284)
American bison	MODERN SPECIES	3358	ENSBBBG00000011294	ENSBBBG00000011285	EI24 (ENSBBBG00000002039)	STT3A (ENSBBBG00000008543)	CHEK1 (ENSBBBG00000002011)	ACRV1 (ENSBBBG00000011061)	ENSBBBG00000011050	ENSBBBG00000011040	ENSBBBG00000011034	ENSBBBG00000011030	PATE1 (ENSBBBG00000011028)	PATE2 (ENSBBBG00000001983)	PATE3 (ENSBBBG00000011015)	ENSBBBG00000011011	PUS3 (ENSBBBG00000011000) #21	HYLS1 (ENSBBBG00000010989) #22	DDX25 (ENSBBBG00000010985) #23	VSIG10L2 (ENSBBBG00000010972)	CDON (ENSBBBG00000010959) #24	RPUSD4 (ENSBBBG00000010938) #26	FAM118B (ENSBBBG00000010923) #27	SRPRA (ENSBBBG00000010892) #28	FOXRED1 (ENSBBBG00000010861) #29	TIRAP (ENSBBBG00000010837) #30	DCPS (ENSBBBG00000007302) #31	ST3GAL4 (ENSBBBG00000010815) #32	KIRREL3 (ENSBBBG00000010758) #33	ENSBBBG00000010718
Siberian musk deer	MODERN SPECIES	1224	TMEM218 (ENSMMSG00000022499)	PKNOX2 (ENSMMSG00000022470)	FEZ1 (ENSMMSG00000022452)	ENSMMSG00000022445	EI24 (ENSMMSG00000022411)	STT3A (ENSMMSG00000022380)	CHEK1 (ENSMMSG00000022326)	ACRV1 (ENSMMSG00000022284)	ENSMMSG00000022270	ENSMMSG00000022264	ENSMMSG00000022256	ENSMMSG00000022244	PATE1 (ENSMMSG00000022210)	PATE2 (ENSMMSG00000022190)	PATE3 (ENSMMSG00000022174)	HYLS1 (ENSMMSG00000022160) #22	PUS3 (ENSMMSG00000022148) #21	DDX25 (ENSMMSG00000022122) #23	VSIG10L2 (ENSMMSG00000022093)	CDON (ENSMMSG00000022047) #24	RPUSD4 (ENSMMSG00000022017) #26	FAM118B (ENSMMSG00000021979) #27	SRPRA (ENSMMSG00000021898) #28	FOXRED1 (ENSMMSG00000021860) #29	TIRAP (ENSMMSG00000021833) #30	DCPS (ENSMMSG00000021804) #31	ST3GAL4 (ENSMMSG00000021749) #32	ENSMMSG00000021731	KIRREL3 (ENSMMSG00000021518) #33	ETS1 (ENSMMSG00000021421)	FLI1 (ENSMMSG00000021311)
Camelidae	ANCESTRAL SPECIES	31	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.b	ENSGT00510000048956	ENSGT00690000102487	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Arabian camel	MODERN SPECIES	26	FEZ1 (ENSCDRG00005016872)	EI24 (ENSCDRG00005016949)	STT3A (ENSCDRG00005017140)	CHEK1 (ENSCDRG00005017226)	ACRV1 (ENSCDRG00005017376)	ENSCDRG00005017427	ENSCDRG00005017457	ENSCDRG00005017478	ENSCDRG00005017501	ENSCDRG00005017526	PATE1 (ENSCDRG00005017553)	ENSCDRG00005017573	PATE2 (ENSCDRG00005017607)	PATE3 (ENSCDRG00005017642)	PUS3 (ENSCDRG00005017661) #21	HYLS1 (ENSCDRG00005017678) #22	DDX25 (ENSCDRG00005017696) #23	VSIG10L2 (ENSCDRG00005017751)	CDON (ENSCDRG00005017804) #24	RPUSD4 (ENSCDRG00005017914) #26	FAM118B (ENSCDRG00005017951) #27	SRPRA (ENSCDRG00005018025) #28	FOXRED1 (ENSCDRG00005018201) #29	TIRAP (ENSCDRG00005018300) #30	DCPS (ENSCDRG00005018334) #31	ST3GAL4 (ENSCDRG00005018408) #32	KIRREL3 (ENSCDRG00005018534) #33	ETS1 (ENSCDRG00005018815)	FLI1 (ENSCDRG00005018918)	KCNJ1 (ENSCDRG00005019169)	KCNJ5 (ENSCDRG00005005404)
Alpaca	MODERN SPECIES	2693															PUS3 (ENSVPAG00000001495) #21	HYLS1 (ENSVPAG00000001503) #22	DDX25 (ENSVPAG00000001505) #23	CDON (ENSVPAG00000001509) #24
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Carnivora	ANCESTRAL SPECIES	21	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Ursidae	ANCESTRAL SPECIES	15	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Ursus	ANCESTRAL SPECIES	71	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
American black bear	MODERN SPECIES	4298																HYLS1 (ENSUAMG00000009294) #22	ENSUAMG00000009287 #23
Polar bear	MODERN SPECIES	149	TMEM218 (ENSUMAG00000001613)	PKNOX2 (ENSUMAG00000001626)	FEZ1 (ENSUMAG00000001652)	EI24 (ENSUMAG00000001674)	STT3A (ENSUMAG00000001686)	CHEK1 (ENSUMAG00000001696)	ACRV1 (ENSUMAG00000001703)	ENSUMAG00000001716	ENSUMAG00000001720	ENSUMAG00000001731	ENSUMAG00000001738	ENSUMAG00000001747	PATE2 (ENSUMAG00000001763)	PATE3 (ENSUMAG00000001775)	ENSUMAG00000001785	HYLS1 (ENSUMAG00000001791) #22	PUS3 (ENSUMAG00000001795) #21	DDX25 (ENSUMAG00000001803) #23	CDON (ENSUMAG00000001889) #24	RPUSD4 (ENSUMAG00000002219) #26	FAM118B (ENSUMAG00000002230) #27	SRPRA (ENSUMAG00000002269) #28	FOXRED1 (ENSUMAG00000002485) #29	TIRAP (ENSUMAG00000002495) #30	DCPS (ENSUMAG00000002520) #31	ST3GAL4 (ENSUMAG00000002531) #32	KIRREL3 (ENSUMAG00000002585) #33	ENSUMAG00000002879	ETS1 (ENSUMAG00000002889)	FLI1 (ENSUMAG00000002908)	KCNJ1 (ENSUMAG00000002933)
Giant Panda	MODERN SPECIES	18	SLC37A2 (ENSAMEG00000000898)	TMEM218 (ENSAMEG00000000926)	PKNOX2 (ENSAMEG00000000930)	FEZ1 (ENSAMEG00000000967)	EI24 (ENSAMEG00000000990)	STT3A (ENSAMEG00000001018)	CHEK1 (ENSAMEG00000001064)	ACRV1 (ENSAMEG00000001069)	ENSAMEG00000000154	ENSAMEG00000030552	ENSAMEG00000030750	ENSAMEG00000030867	PATE2 (ENSAMEG00000030538)	PATE3 (ENSAMEG00000026847)	ENSAMEG00000000151	HYLS1 (ENSAMEG00000030606) #22	PUS3 (ENSAMEG00000000144) #21	DDX25 (ENSAMEG00000000138) #23	CDON (ENSAMEG00000000130) #24	ENSAMEG00000000127 #26	FAM118B (ENSAMEG00000000125) #27	SRPRA (ENSAMEG00000000117) #28	FOXRED1 (ENSAMEG00000000116) #29	TIRAP (ENSAMEG00000000115) #30	DCPS (ENSAMEG00000000111) #31	ST3GAL4 (ENSAMEG00000000106) #32	KIRREL3 (ENSAMEG00000000102) #33	ETS1 (ENSAMEG00000002585)	FLI1 (ENSAMEG00000025623)	KCNJ1 (ENSAMEG00000019148)	KCNJ5 (ENSAMEG00000002556)
Mustelinae	ANCESTRAL SPECIES	24	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
American mink	DUPLICATION
American mink	MODERN SPECIES	229	PKNOX2 (ENSNVIG00000020415)	FEZ1 (ENSNVIG00000020397)	EI24 (ENSNVIG00000020350)	STT3A (ENSNVIG00000020278)	CHK1 (ENSNVIG00000020144)	ACRV1 (ENSNVIG00000020120)	ENSNVIG00000020113	ENSNVIG00000020106	ENSNVIG00000020100	PATE1 (ENSNVIG00000020091)	ENSNVIG00000020087	PATE2 (ENSNVIG00000020075)	PATE3 (ENSNVIG00000020068)	ENSNVIG00000020064	ENSNVIG00000020061	ENSNVIG00000020054 #22	PUS3 (ENSNVIG00000020049) #21	DDX25 (ENSNVIG00000019998) #23	VSIG10L2 (ENSNVIG00000019971)	CDON (ENSNVIG00000019901) #24	RPUSD4 (ENSNVIG00000019884) #26	FAM118B (ENSNVIG00000019829) #27	SRPRA (ENSNVIG00000019747) #28	FOXRED1 (ENSNVIG00000019663) #29	TIRAP (ENSNVIG00000019633) #30	DCPS (ENSNVIG00000019627) #31	SIA4C (ENSNVIG00000019602) #32	KIRREL3 (ENSNVIG00000019510) #33
American mink	MODERN SPECIES	177											KLKB1 (ENSNVIG00000020383)	F11 (ENSNVIG00000020407)	MTNR1A (ENSNVIG00000020442)	FAT1 (ENSNVIG00000020460)	ENSNVIG00000020541	ENSNVIG00000020552 #22	ENSNVIG00000020561	TRIML2 (ENSNVIG00000020575)	TRIML1 (ENSNVIG00000020601)	ENSNVIG00000020639	FRG1 (ENSNVIG00000020655)	ASAH1 (ENSNVIG00000020695)	PCM1 (ENSNVIG00000021043)	FGL1 (ENSNVIG00000021175)	MTUS1 (ENSNVIG00000021245)	ENSNVIG00000021458	PDGFRL (ENSNVIG00000021467)
Ferret	MODERN SPECIES	188	ROBO3 (ENSMPUG00000006103)	ROBO4 (ENSMPUG00000006238)	HEPACAM (ENSMPUG00000006255)	CCDC15 (ENSMPUG00000006289)	SLC37A2 (ENSMPUG00000006302)	TMEM218 (ENSMPUG00000006437)	PKNOX2 (ENSMPUG00000006449)	FEZ1 (ENSMPUG00000006461)	EI24 (ENSMPUG00000006470)	STT3A (ENSMPUG00000006479)	CHEK1 (ENSMPUG00000006494)	ACRV1 (ENSMPUG00000006507)	ENSMPUG00000006544	ENSMPUG00000006549	ENSMPUG00000018414	HYLS1 (ENSMPUG00000006559) #22	PUS3 (ENSMPUG00000006568) #21	DDX25 (ENSMPUG00000006577) #23	CDON (ENSMPUG00000006591) #24	RPUSD4 (ENSMPUG00000006608) #26	FAM118B (ENSMPUG00000006617) #27	SRPRA (ENSMPUG00000006626) #28	FOXRED1 (ENSMPUG00000006635) #29	TIRAP (ENSMPUG00000006645) #30	DCPS (ENSMPUG00000006653) #31	ST3GAL4 (ENSMPUG00000006700) #32	KIRREL3 (ENSMPUG00000006711) #33	ENSMPUG00000006722
Canidae	ANCESTRAL SPECIES	27	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Canis_lupus	ANCESTRAL SPECIES	28	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Dog	MODERN SPECIES	33	PKNOX2 (ENSCAFG00845011164)	FEZ1 (ENSCAFG00845011053)	EI24 (ENSCAFG00845010949)	STT3A (ENSCAFG00845010774)	CHEK1 (ENSCAFG00845010598)	ACRV1 (ENSCAFG00845010520)	ENSCAFG00845010479	ENSCAFG00845010451	ENSCAFG00845010435	ENSCAFG00845010399	PATE1 (ENSCAFG00845010371)	ENSCAFG00845010348	PATE2 (ENSCAFG00845010327)	PATE3 (ENSCAFG00845010295)	ENSCAFG00845010275	HYLS1 (ENSCAFG00845010259) #22	PUS3 (ENSCAFG00845010225) #21	DDX25 (ENSCAFG00845010150) #23	CDON (ENSCAFG00845009814) #24	RPUSD4 (ENSCAFG00845009694) #26	FAM118B (ENSCAFG00845009624) #27	SRPRA (ENSCAFG00845009534) #28	FOXRED1 (ENSCAFG00845009437) #29	TIRAP (ENSCAFG00845009385) #30	DCPS (ENSCAFG00845009346) #31	ST3GAL4 (ENSCAFG00845009303) #32	KIRREL3 (ENSCAFG00845009016) #33	ETS1 (ENSCAFG00845008749)	FLI1 (ENSCAFG00845008397)	KCNJ1 (ENSCAFG00845008225)	ENSCAFG00845008211
Dingo	MODERN SPECIES	214	ENSCAFG00020010749	ENSCAFG00020010736	STT3A (ENSCAFG00020010731)	CHEK1 (ENSCAFG00020010694)	ACRV1 (ENSCAFG00020010685)	ENSCAFG00020010684	ENSCAFG00020010682	ENSCAFG00020010675	ENSCAFG00020010674	ENSCAFG00020010671	ENSCAFG00020010669	PATE2 (ENSCAFG00020010668)	PATE3 (ENSCAFG00020010665)	ENSCAFG00020010661	PUS3 (ENSCAFG00020010659) #21	HYLS1 (ENSCAFG00020010655) #22	DDX25 (ENSCAFG00020010651) #23	CDON (ENSCAFG00020010636) #24	RPUSD4 (ENSCAFG00020010621) #26	FAM118B (ENSCAFG00020010617) #27	SRPRA (ENSCAFG00020010608) #28	FOXRED1 (ENSCAFG00020010605) #29	TIRAP (ENSCAFG00020010602) #30	DCPS (ENSCAFG00020010596) #31	ST3GAL4 (ENSCAFG00020010584) #32	KIRREL3 (ENSCAFG00020010573) #33	ENSCAFG00020010494	FLI1 (ENSCAFG00020010486)	KCNJ1 (ENSCAFG00020010482)	KCNJ5 (ENSCAFG00020010479)	ARHGAP32 (ENSCAFG00020010347)
Red fox	MODERN SPECIES	29	FEZ1 (ENSVVUG00000020488)	EI24 (ENSVVUG00000020480)	STT3A (ENSVVUG00000020473)	CHEK1 (ENSVVUG00000020224)	ACRV1 (ENSVVUG00000020213)	ENSVVUG00000020203	ENSVVUG00000020200	ENSVVUG00000020189	ENSVVUG00000020185	ENSVVUG00000020180	PATE1 (ENSVVUG00000020176)	ENSVVUG00000020173	PATE2 (ENSVVUG00000020169)	PATE3 (ENSVVUG00000020167)	ENSVVUG00000020163	HYLS1 (ENSVVUG00000020160) #22	PUS3 (ENSVVUG00000020152) #21	DDX25 (ENSVVUG00000020142) #23	CDON (ENSVVUG00000020109) #24	RPUSD4 (ENSVVUG00000020101) #26	FAM118B (ENSVVUG00000020098) #27	SRPRA (ENSVVUG00000020094) #28	FOXRED1 (ENSVVUG00000020089) #29	ENSVVUG00000020087 #30	DCPS (ENSVVUG00000020085) #31	ST3GAL4 (ENSVVUG00000020081) #32	KIRREL3 (ENSVVUG00000020073) #33	ETS1 (ENSVVUG00000020004)	FLI1 (ENSVVUG00000019992)	KCNJ1 (ENSVVUG00000019986)	KCNJ5 (ENSVVUG00000019982)
Felidae	ANCESTRAL SPECIES		ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Panthera	ANCESTRAL SPECIES	23							ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Tiger	MODERN SPECIES	173										ENSPTIG00000011363	ENSPTIG00000010870	PATE1 (ENSPTIG00000010013)	PATE2 (ENSPTIG00000008468)	PATE3 (ENSPTIG00000007797)	ENSPTIG00000007358	HYLS1 (ENSPTIG00000005712) #22	PUS3 (ENSPTIG00000001192) #21	DDX25 (ENSPTIG00000018953) #23	VSIG10L2 (ENSPTIG00000018101)	CDON (ENSPTIG00000013079) #24	RPUSD4 (ENSPTIG00000012059) #26	FAM118B (ENSPTIG00000009883) #27	SRPRA (ENSPTIG00000006989) #28	FOXRED1 (ENSPTIG00000005739) #29	TIRAP (ENSPTIG00000000582) #30	DCPS (ENSPTIG00000021939) #31	ST3GAL4 (ENSPTIG00000016621) #32	KIRREL3 (ENSPTIG00000011714) #33	ETS1 (ENSPTIG00000021420)	FLI1 (ENSPTIG00000017957)	KCNJ1 (ENSPTIG00000017138)
Panthera_a	ANCESTRAL SPECIES	24								ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363.c	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
lion	MODERN SPECIES	10	NRGN (ENSPLOG00000007734)	VSIG2 (ENSPLOG00000007758)	ESAM (ENSPLOG00000007796)	MSANTD2 (ENSPLOG00000007835)	ROBO3 (ENSPLOG00000007890)	ROBO4 (ENSPLOG00000008054)	HEPACAM (ENSPLOG00000008223)	CCDC15 (ENSPLOG00000008286)	SLC37A2 (ENSPLOG00000008333)	TMEM218 (ENSPLOG00000008382)	PKNOX2 (ENSPLOG00000008417)	FEZ1 (ENSPLOG00000008483)	EI24 (ENSPLOG00000008558)	STT3A (ENSPLOG00000008673)	CHEK1 (ENSPLOG00000008775)	HYLS1 (ENSPLOG00000009006) #22	PUS3 (ENSPLOG00000009029) #21	DDX25 (ENSPLOG00000009065) #23	VSIG10L2 (ENSPLOG00000009191)	CDON (ENSPLOG00000009274) #24	RPUSD4 (ENSPLOG00000009314) #26	FAM118B (ENSPLOG00000009436) #27	SRPRA (ENSPLOG00000009505) #28	FOXRED1 (ENSPLOG00000009667) #29	TIRAP (ENSPLOG00000009748) #30	DCPS (ENSPLOG00000009768) #31	ST3GAL4 (ENSPLOG00000009837) #32	KIRREL3 (ENSPLOG00000010084) #33	ENSPLOG00000010342	ETS1 (ENSPLOG00000010415)	FLI1 (ENSPLOG00000010557)
leopard	MODERN SPECIES	85						ENSPPRG00000007260	ENSPPRG00000007233	ENSPPRG00000007214	ENSPPRG00000006926	PATE1 (ENSPPRG00000006809)	PATE2 (ENSPPRG00000006144)	PATE3 (ENSPPRG00000005889)	ENSPPRG00000005781	ENSPPRG00000005737	PUS3 (ENSPPRG00000005662) #21	HYLS1 (ENSPPRG00000015126) #22	DDX25 (ENSPPRG00000005392) #23	VSIG10L2 (ENSPPRG00000004862)	CDON (ENSPPRG00000004720) #24	RPUSD4 (ENSPPRG00000003081) #26	FAM118B (ENSPPRG00000002583) #27	SRPRA (ENSPPRG00000001542) #28	FOXRED1 (ENSPPRG00000000073) #29	TIRAP (ENSPPRG00000022828) #30	DCPS (ENSPPRG00000023157) #31	ENSPPRG00000023463	ST3GAL4 (ENSPPRG00000024002) #32	KIRREL3 (ENSPPRG00000024377) #33	ENSPPRG00000017988	ETS1 (ENSPPRG00000015595)	FLI1 (ENSPPRG00000011704)
Cat	MODERN SPECIES	241	ROBO3 (ENSFCAG00000006751)	ROBO4 (ENSFCAG00000006753)	HEPACAM (ENSFCAG00000006755)	CCDC15 (ENSFCAG00000027764)	SLC37A2 (ENSFCAG00000015334)	TMEM218 (ENSFCAG00000015332)	PKNOX2 (ENSFCAG00000015096)	FEZ1 (ENSFCAG00000028004)	EI24 (ENSFCAG00000015100)	STT3A (ENSFCAG00000015102)	CHEK1 (ENSFCAG00000015103)	ENSFCAG00000046038	ENSFCAG00000039307	PATE2 (ENSFCAG00000046618)	PATE3 (ENSFCAG00000040318)	HYLS1 (ENSFCAG00000042201) #22	PUS3 (ENSFCAG00000005340) #21	DDX25 (ENSFCAG00000005341) #23	VSIG10L2 (ENSFCAG00000041620)	CDON (ENSFCAG00000005342) #24	RPUSD4 (ENSFCAG00000029789) #26	FAM118B (ENSFCAG00000005343) #27	SRPRA (ENSFCAG00000011274) #28	FOXRED1 (ENSFCAG00000004180) #29	TIRAP (ENSFCAG00000046185) #30	ST3GAL4 (ENSFCAG00000011276) #32	KIRREL3 (ENSFCAG00000011277) #33	ENSFCAG00000050856	ETS1 (ENSFCAG00000018598)	FLI1 (ENSFCAG00000042373)	KCNJ1 (ENSFCAG00000013060)
Laurasiatheria_c	ANCESTRAL SPECIES	23	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00940000163158.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Equus	ANCESTRAL SPECIES	25	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.b.c.a	ENSGT00940000163158.b.b.c.b.a	ENSGT00510000050146.B	ENSGT00940000163158.b.b.c.b.b	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00510000050363	ENSGT00940000161017.d	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428.a #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Donkey	MODERN SPECIES	12	ENSEASG00005001831	ENSEASG00005001837	ENSEASG00005001821	PATE1 (ENSEASG00005029891)	PATE2 (ENSEASG00005034862)	ENSEASG00005031413	ENSEASG00005027879	ENSEASG00005001784	ENSEASG00005031700	ENSEASG00005027342	ENSEASG00005028844	ENSEASG00005023004	ENSEASG00005036826	ENSEASG00005027056	PUS3 (ENSEASG00005023003) #21	HYLS1 (ENSEASG00005032143) #22	DDX25 (ENSEASG00005023001) #23	VSIG10L2 (ENSEASG00005033108)	CDON (ENSEASG00005022988) #24	RPUSD4 (ENSEASG00005022982) #26	FAM118B (ENSEASG00005022981) #27	SRPRA (ENSEASG00005022980) #28	FOXRED1 (ENSEASG00005022979) #29	ENSEASG00005022978 #30	DCPS (ENSEASG00005022977) #31	ST3GAL4 (ENSEASG00005022975) #32	KIRREL3 (ENSEASG00005022973) #33	ETS1 (ENSEASG00005022967)	FLI1 (ENSEASG00005022961)	KCNJ1 (ENSEASG00005030239)	KCNJ5 (ENSEASG00005022958)
Horse	MODERN SPECIES	28	ENSECAG00000047516	ENSECAG00000054565	ENSECAG00000018486	PATE1 (ENSECAG00000018504)	PATE2 (ENSECAG00000020423)	PATE3 (ENSECAG00000037530)	ENSECAG00000031647	ENSECAG00000035605	ENSECAG00000021090	ENSECAG00000057382	ENSECAG00000047458	ENSECAG00000021268	ENSECAG00000031671	ENSECAG00000043008	PUS3 (ENSECAG00000007581) #21	HYLS1 (ENSECAG00000006921) #22	DDX25 (ENSECAG00000009643) #23	VSIG10L2 (ENSECAG00000040825)	CDON (ENSECAG00000017335) #24	RPUSD4 (ENSECAG00000000557) #26	FAM118B (ENSECAG00000005590) #27	SRPRA (ENSECAG00000014692) #28	FOXRED1 (ENSECAG00000022359) #29	DCPS (ENSECAG00000012956) #31	TIRAP (ENSECAG00000049250) #30	ST3GAL4 (ENSECAG00000017156) #32	KIRREL3 (ENSECAG00000024599) #33	ETS1 (ENSECAG00000010897)	FLI1 (ENSECAG00000021051)	KCNJ1 (ENSECAG00000024963)	KCNJ5 (ENSECAG00000025007)
Chiroptera	ANCESTRAL SPECIES	52	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126.b #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Microchiroptera	ANCESTRAL SPECIES	9	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000050363	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126.b #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Greater horseshoe bat	MODERN SPECIES	17	SLC37A2 (ENSRFEG00010007767)	TMEM218 (ENSRFEG00010007872)	PKNOX2 (ENSRFEG00010007936)	FEZ1 (ENSRFEG00010007983)	STT3A (ENSRFEG00010008084)	CHEK1 (ENSRFEG00010008393)	ACRV1 (ENSRFEG00010008599)	ENSRFEG00010008634	ENSRFEG00010008659	ENSRFEG00010008693	ENSRFEG00010008740	PATE1 (ENSRFEG00010008784)	ENSRFEG00010008889	PATE2 (ENSRFEG00010008944)	PATE3 (ENSRFEG00010009006)	HYLS1 (ENSRFEG00010009048) #22	PUS3 (ENSRFEG00010009079) #21	DDX25 (ENSRFEG00010009110) #23	VSIG10L2 (ENSRFEG00010009174)	CDON (ENSRFEG00010009272) #24	RPUSD4 (ENSRFEG00010009341) #26	FAM118B (ENSRFEG00010009373) #27	SRPRA (ENSRFEG00010009473) #28	FOXRED1 (ENSRFEG00010009652) #29	TIRAP (ENSRFEG00010009793) #30	DCPS (ENSRFEG00010009838) #31	ST3GAL4 (ENSRFEG00010009892) #32	KIRREL3 (ENSRFEG00010010202) #33	ENSRFEG00010010506	ENSRFEG00010010555	ETS1 (ENSRFEG00010010620)
Microbat	MODERN SPECIES	1319	HEPACAM (ENSMLUG00000027103)	CCDC15 (ENSMLUG00000008581)	SLC37A2 (ENSMLUG00000008616)	TMEM218 (ENSMLUG00000008641)	PKNOX2 (ENSMLUG00000002240)	FEZ1 (ENSMLUG00000002246)	ENSMLUG00000027536	EI24 (ENSMLUG00000001583)	STT3A (ENSMLUG00000006126)	CHEK1 (ENSMLUG00000005817)	ACRV1 (ENSMLUG00000007574)	ENSMLUG00000024265	ENSMLUG00000017478	ENSMLUG00000022927	PUS3 (ENSMLUG00000030636) #21	HYLS1 (ENSMLUG00000008716) #22	DDX25 (ENSMLUG00000008700) #23	CDON (ENSMLUG00000017324) #24
Megabat	MODERN SPECIES	4658																HYLS1 (ENSPVAG00000016529) #22
Eulipotyphla	ANCESTRAL SPECIES	301															ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24
Hedgehog	MODERN SPECIES	12843															PUS3 (ENSEEUG00000010543) #21	HYLS1 (ENSEEUG00000010575) #22
Common shrew	MODERN SPECIES	6556															PUS3 (ENSSARG00000013826) #21	HYLS1 (ENSSARG00000013831) #22	DDX25 (ENSSARG00000013832) #23
Atlantogenata	ANCESTRAL SPECIES	65	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Afrotheria	ANCESTRAL SPECIES	84	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	18037																ENSETEG00000015477 #22
Tenrec	MODERN SPECIES	9643																ENSETEG00000019312 #22
Afrotheria_a	ANCESTRAL SPECIES	86	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050363	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Elephant	MODERN SPECIES	429	MSANTD2 (ENSLAFG00000008983)	ROBO3 (ENSLAFG00000031269)	ROBO4 (ENSLAFG00000014592)	HEPACAM (ENSLAFG00000014605)	CCDC15 (ENSLAFG00000027256)	ENSLAFG00000017317	TMEM218 (ENSLAFG00000017335)	PKNOX2 (ENSLAFG00000010875)	FEZ1 (ENSLAFG00000010884)	EI24 (ENSLAFG00000010888)	STT3A (ENSLAFG00000010894)	CHEK1 (ENSLAFG00000022165)	ACRV1 (ENSLAFG00000013378)	ENSLAFG00000030114	PUS3 (ENSLAFG00000000535) #21	HYLS1 (ENSLAFG00000027766) #22	DDX25 (ENSLAFG00000000532) #23	CDON (ENSLAFG00000008045) #24	RPUSD4 (ENSLAFG00000005211) #26	FAM118B (ENSLAFG00000010248) #27	SRPRA (ENSLAFG00000010252) #28	FOXRED1 (ENSLAFG00000010256) #29	TIRAP (ENSLAFG00000010260) #30	DCPS (ENSLAFG00000006052) #31	ST3GAL4 (ENSLAFG00000001862) #32	KIRREL3 (ENSLAFG00000001864) #33	ENSLAFG00000029954	ETS1 (ENSLAFG00000030068)	FLI1 (ENSLAFG00000013824)	KCNJ1 (ENSLAFG00000005037)	KCNJ5 (ENSLAFG00000027858)
Xenarthra	ANCESTRAL SPECIES	24	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
Armadillo	MODERN SPECIES	2627	TMEM218 (ENSDNOG00000011351)	PKNOX2 (ENSDNOG00000006362)	FEZ1 (ENSDNOG00000002528)	ENSDNOG00000002362	STT3A (ENSDNOG00000009724)	CHEK1 (ENSDNOG00000036059)	ACRV1 (ENSDNOG00000032692)	ENSDNOG00000044360	ENSDNOG00000040014	ENSDNOG00000032899	ENSDNOG00000040324	ENSDNOG00000047952	PATE1 (ENSDNOG00000011661)	PATE2 (ENSDNOG00000017747)	PATE3 (ENSDNOG00000032235)	HYLS1 (ENSDNOG00000002867) #22	PUS3 (ENSDNOG00000040719) #21	DDX25 (ENSDNOG00000007989) #23	ENSDNOG00000034432	ENSDNOG00000040955	CDON (ENSDNOG00000008000) #24	RPUSD4 (ENSDNOG00000020026) #26	FAM118B (ENSDNOG00000010808) #27	SRPRA (ENSDNOG00000010821) #28	FOXRED1 (ENSDNOG00000009712) #29	TIRAP (ENSDNOG00000042393) #30	DCPS (ENSDNOG00000003974) #31	ST3GAL4 (ENSDNOG00000030902) #32	KIRREL3 (ENSDNOG00000019923) #33
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT00510000048956	ENSGT01100000265970	ENSGT00390000005569.w.b.b	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Opossum	MODERN SPECIES	3	ENSMODG00000003952	ENSMODG00000003980	ENSMODG00000003987	ENSMODG00000049673	PKNOX2 (ENSMODG00000004022)	FEZ1 (ENSMODG00000004051)	EI24 (ENSMODG00000004075)	STT3A (ENSMODG00000004100)	CHEK1 (ENSMODG00000004135)	ENSMODG00000024229	ENSMODG00000036421	ENSMODG00000051605	ENSMODG00000044971	ENSMODG00000047589	ENSMODG00000039434	HYLS1 (ENSMODG00000004232) #22	PUS3 (ENSMODG00000004222) #21	DDX25 (ENSMODG00000004275) #23	CDON (ENSMODG00000004499) #24	RPUSD4 (ENSMODG00000004521) #26	FAM118B (ENSMODG00000004550) #27	SRPRA (ENSMODG00000004576) #28	FOXRED1 (ENSMODG00000004595) #29	ENSMODG00000004601 #30	DCPS (ENSMODG00000004617) #31	ST3GAL4 (ENSMODG00000004657) #32	KIRREL3 (ENSMODG00000004676) #33	ENSMODG00000004696	ENSMODG00000044777	ETS1 (ENSMODG00000004730)	FLI1 (ENSMODG00000004763)
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000157231	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT01100000265970	ENSGT00390000005569.w.b.b	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT01100000265970	ENSGT00390000005569.w.b.b	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b	ENSGT01080000257365.b.a.b.a.b
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000157231	ENSGT00390000013593	ENSGT00940000155457	ENSGT00940000161382	ENSGT01100000263551.a	ENSGT00500000044966	ENSGT00940000158657	ENSGT00390000016247	ENSGT00940000158793	ENSGT00390000017627.b	ENSGT00390000018633	ENSGT00940000156655	ENSGT00940000159682	ENSGT01100000265970	ENSGT00390000005569.w.b.b	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114.k #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261	ENSGT00990000203615.b.b
Common wonbat	MODERN SPECIES	1049	ENSVURG00010022258	ENSVURG00010022253	PKNOX2 (ENSVURG00010022249)	FEZ1 (ENSVURG00010022244)	EI24 (ENSVURG00010022240)	STT3A (ENSVURG00010022234)	CHEK1 (ENSVURG00010022215)	ENSVURG00010022206	ENSVURG00010022123	ENSVURG00010022111	ENSVURG00010022109	ENSVURG00010022105	ENSVURG00010022101	ENSVURG00010022099	ENSVURG00010022090	HYLS1 (ENSVURG00010022085) #22	PUS3 (ENSVURG00010022076) #21	DDX25 (ENSVURG00010022065) #23	VSIG10L2 (ENSVURG00010022062)	CDON (ENSVURG00010022048) #24	RPUSD4 (ENSVURG00010022042) #26	ENSVURG00010022037	FAM118B (ENSVURG00010022031) #27	SRPRA (ENSVURG00010022004) #28	FOXRED1 (ENSVURG00010021993) #29	TIRAP (ENSVURG00010021989) #30	DCPS (ENSVURG00010021985) #31	ST3GAL4 (ENSVURG00010021979) #32	KIRREL3 (ENSVURG00010021968) #33	ENSVURG00010021966	ETS1 (ENSVURG00010021932)
koala	MODERN SPECIES	86	ENSPCIG00000018994	ROBO4 (ENSPCIG00000018998)	HEPACAM (ENSPCIG00000019001)	ENSPCIG00000032229	ENSPCIG00000035654	ENSPCIG00000001194	PKNOX2 (ENSPCIG00000023564)	FEZ1 (ENSPCIG00000023561)	EI24 (ENSPCIG00000023558)	STT3A (ENSPCIG00000023556)	CHEK1 (ENSPCIG00000023554)	ENSPCIG00000001241	ENSPCIG00000019985	ENSPCIG00000035971	PUS3 (ENSPCIG00000010225) #21	HYLS1 (ENSPCIG00000010227) #22	DDX25 (ENSPCIG00000010222) #23	CDON (ENSPCIG00000010214) #24	RPUSD4 (ENSPCIG00000010212) #26	FAM118B (ENSPCIG00000010210) #27	SRPRA (ENSPCIG00000010207) #28	ENSPCIG00000010206 #29	TIRAP (ENSPCIG00000010205) #30	DCPS (ENSPCIG00000010203) #31	ENSPCIG00000010202 #32	KIRREL3 (ENSPCIG00000009854) #33
Wallaby	MODERN SPECIES	9867															PUS3 (ENSMEUG00000014040) #21	HYLS1 (ENSMEUG00000014051) #22
Tasmanian devil	MODERN SPECIES	2	ROBO3 (ENSSHAG00000015465)	ROBO4 (ENSSHAG00000025769)	ENSSHAG00000015675	ENSSHAG00000022111	ENSSHAG00000017511	ENSSHAG00000021673	ENSSHAG00000028005	PKNOX2 (ENSSHAG00000016900)	FEZ1 (ENSSHAG00000017210)	EI24 (ENSSHAG00000023942)	STT3A (ENSSHAG00000017365)	ENSSHAG00000017445	ENSSHAG00000031012	ENSSHAG00000031325	ENSSHAG00000022424	ENSSHAG00000025268 #22	PUS3 (ENSSHAG00000001382) #21	DDX25 (ENSSHAG00000002011) #23	CDON (ENSSHAG00000004504) #24	RPUSD4 (ENSSHAG00000027747) #26	SRPRA (ENSSHAG00000009168) #28	ENSSHAG00000009226 #29	TIRAP (ENSSHAG00000028142) #30	DCPS (ENSSHAG00000002250) #31	ST3GAL4 (ENSSHAG00000000682) #32	ENSSHAG00000032321	KIRREL3 (ENSSHAG00000002795) #33	ETS1 (ENSSHAG00000017453)	FLI1 (ENSSHAG00000024046)	KCNJ5 (ENSSHAG00000018262)	ARHGAP32 (ENSSHAG00000018412)
Platypus	MODERN SPECIES	2	ENSOANG00000015189	ENSOANG00000015191	ENSOANG00000013936	ENSOANG00000039039	ENSOANG00000047823	ROBO4 (ENSOANG00000043256)	ENSOANG00000011051	ENSOANG00000001257	SLC37A2 (ENSOANG00000040656)	ENSOANG00000040851	PKNOX2 (ENSOANG00000049408)	FEZ1 (ENSOANG00000000318)	EI24 (ENSOANG00000006304)	STT3A (ENSOANG00000006302)	CHEK1 (ENSOANG00000006301)	ENSOANG00000046677 #22	PUS3 (ENSOANG00000000406) #21	ENSOANG00000012968 #23	CDON (ENSOANG00000003430) #24	RPUSD4 (ENSOANG00000007247) #26	FAM118B (ENSOANG00000046124) #27	SRPRA (ENSOANG00000051121) #28	FOXRED1 (ENSOANG00000001155) #29	ENSOANG00000048675 #30	ENSOANG00000045551	ENSOANG00000037431 #31	ENSOANG00000043306 #31	ENSOANG00000012105 #32	ENSOANG00000003450	ENSOANG00000006506	MYL7 (ENSOANG00000006505)
Sauria	ANCESTRAL SPECIES	31	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
Archelosauria	ANCESTRAL SPECIES	31	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
Archosauria	ANCESTRAL SPECIES	26	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620
Aves	ANCESTRAL SPECIES	32	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT01030000236275	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
Neognathae	ANCESTRAL SPECIES	29	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000168265	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT01030000236275	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620
Neognathae_b	ANCESTRAL SPECIES	29	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT01030000236275	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
Passeriformes	ANCESTRAL SPECIES	28	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457.p.a	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT01030000236275	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
Passeriformes_d	ANCESTRAL SPECIES	29	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457.p.a	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT01030000236275	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265	ENSGT00940000164559.A	ENSGT00940000155457.p.a	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT01030000236275	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261
Medium ground finch	MODERN SPECIES	243	ENSGFOG00000013630	SLC37A2 (ENSGFOG00000013633)	ENSGFOG00000013679	HEPACAM (ENSGFOG00000013682)	ENSGFOG00000013686	ENSGFOG00000013699	ENSGFOG00000013704	MSANTD2 (ENSGFOG00000013708)	ESAM (ENSGFOG00000013712)	NRGN (ENSGFOG00000013714)	ENSGFOG00000013717	SIAE (ENSGFOG00000013719)	PANX3 (ENSGFOG00000013721)	RPUSD4 (ENSGFOG00000013722) #26	PUS3 (ENSGFOG00000013724) #21	HYLS1 (ENSGFOG00000013725) #22	DDX25 (ENSGFOG00000013727) #23	ENSGFOG00000013731	CDON (ENSGFOG00000013750) #24	CHEK1 (ENSGFOG00000013825)	STT3A (ENSGFOG00000013827)	EI24 (ENSGFOG00000013838)	FOXRED1 (ENSGFOG00000013841) #29	SRPRA (ENSGFOG00000013847) #28	FAM118B (ENSGFOG00000013858) #27	TIRAP (ENSGFOG00000013859) #30	DCPS (ENSGFOG00000013861) #31	ST3GAL4 (ENSGFOG00000013863) #32	KIRREL3 (ENSGFOG00000013865) #33
Neognathae_c	ANCESTRAL SPECIES	32	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000173276	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519	ENSGT00940000158261
Golden eagle	MODERN SPECIES	24	PKNOX2 (ENSACCG00020013603)	ENSACCG00020013586	SLC37A2 (ENSACCG00020013547)	ENSACCG00020013520	HEPACAM (ENSACCG00020013508)	ENSACCG00020013465	ENSACCG00020013417	MSANTD2 (ENSACCG00020013397)	ESAM (ENSACCG00020013373)	NRGN (ENSACCG00020013365)	ENSACCG00020013354	SIAE (ENSACCG00020013341)	PANX3 (ENSACCG00020013325)	RPUSD4 (ENSACCG00020013303) #26	PUS3 (ENSACCG00020013289) #21	HYLS1 (ENSACCG00020013272) #22	ENSACCG00020013262	DDX25 (ENSACCG00020013241) #23	ENSACCG00020013217	CDON (ENSACCG00020013186) #24	CHEK1 (ENSACCG00020013156)	STT3A (ENSACCG00020013132)	EI24 (ENSACCG00020013102)	FOXRED1 (ENSACCG00020013083) #29	SRPRA (ENSACCG00020013044) #28	FAM118B (ENSACCG00020013014) #27	ENSACCG00020012964	TIRAP (ENSACCG00020012914) #30	DCPS (ENSACCG00020012881) #31	ST3GAL4 (ENSACCG00020012848) #32	KIRREL3 (ENSACCG00020012795) #33
Kakapo	MODERN SPECIES	7	ENSSHBG00005019816	FEZ1 (ENSSHBG00005019814)	PKNOX2 (ENSSHBG00005019809)	TMEM218 (ENSSHBG00005019806)	SLC37A2 (ENSSHBG00005019658)	ENSSHBG00005019646	HEPACAM (ENSSHBG00005019645)	ENSSHBG00005019643	ENSSHBG00005019642	MSANTD2 (ENSSHBG00005019641)	ESAM (ENSSHBG00005019639)	NRGN (ENSSHBG00005019638)	SIAE (ENSSHBG00005019603)	PANX3 (ENSSHBG00005019602)	RPUSD4 (ENSSHBG00005019601) #26	ENSSHBG00005019600 #22	PUS3 (ENSSHBG00005019597) #21	DDX25 (ENSSHBG00005019594) #23	CDON (ENSSHBG00005019569) #24	FLI1 (ENSSHBG00005019552)	KCNJ1 (ENSSHBG00005019544)	KCNJ5 (ENSSHBG00005019542)	ETS1 (ENSSHBG00005019539)	KIRREL3 (ENSSHBG00005019532) #33	ST3GAL4 (ENSSHBG00005019527) #32	DCPS (ENSSHBG00005019525) #31	TIRAP (ENSSHBG00005019523) #30	ATP12A (ENSSHBG00005017293)	SCN3B (ENSSHBG00005017191)	GRAMD1B (ENSSHBG00005016697)	CLMP (ENSSHBG00005016644)
Galloanserae	ANCESTRAL SPECIES	27		ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT01100000263551.b.b.a	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Phasianidae	ANCESTRAL SPECIES	27	ENSGT00940000156445	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265.a	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT01080000259788	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT01100000263551.b.b.a	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Phasianidae_b	ANCESTRAL SPECIES	26	ENSGT00940000156445	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265.a	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT01080000259788	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT01100000263551.b.b.a	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000006114 #29	ENSGT00550000074936 #28	ENSGT00390000010215.B #27	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT01040000244620	ENSGT00940000159519	ENSGT00940000158261
Turkey	MODERN SPECIES	18	HMBS (ENSMGAG00000003389)	VPS11 (ENSMGAG00000003432)	ENSMGAG00000000706	FEZ1 (ENSMGAG00000000696)	PKNOX2 (ENSMGAG00000000677)	SLC37A2 (ENSMGAG00000000762)	ENSMGAG00000000779	HEPACAM (ENSMGAG00000000783)	ENSMGAG00000000786	MSANTD2 (ENSMGAG00000000810)	ESAM (ENSMGAG00000000818)	NRGN (ENSMGAG00000000823)	PANX3 (ENSMGAG00000000826)	ENSMGAG00000000840 #26	PUS3 (ENSMGAG00000000851) #21	HYLS1 (ENSMGAG00000000854) #22	ENSMGAG00000000857 #24	ENSMGAG00000022500 #24	CHEK1 (ENSMGAG00000016891)	ENSMGAG00000000711	EI24 (ENSMGAG00000000719)	ENSMGAG00000000732 #28	ENSMGAG00000000745 #27	TIRAP (ENSMGAG00000000748) #30	DCPS (ENSMGAG00000000755) #31	ST3GAL4 (ENSMGAG00000000898) #32	KIRREL3 (ENSMGAG00000000925) #33	ENSMGAG00000017581	ENSMGAG00000021400	ETS1 (ENSMGAG00000000967)	FLI1 (ENSMGAG00000000976)
Chicken	MODERN SPECIES	16	VPS11 (ENSGALG00010026433)	SIK2 (ENSGALG00010024415)	FEZ1 (ENSGALG00010024431)	PKNOX2 (ENSGALG00010024440)	ENSGALG00010024511	HEPACAM (ENSGALG00010024521)	ENSGALG00010024535	ROBO3 (ENSGALG00010024561)	MSANTD2 (ENSGALG00010024620)	ENSGALG00010024629	NRGN (ENSGALG00010024633)	ENSGALG00010024635	PANX3 (ENSGALG00010024636)	RPUSD4 (ENSGALG00010024647) #26	PUS3 (ENSGALG00010024652) #21	HYLS1 (ENSGALG00010024656) #22	ENSGALG00010024661	CDON (ENSGALG00010023809) #24	CHEK1 (ENSGALG00010023828)	STT3A (ENSGALG00010023837)	EI24 (ENSGALG00010023879)	FOXRED1 (ENSGALG00010023909) #29	SRPRA (ENSGALG00010023930) #28	FAM118B (ENSGALG00010023979) #27	TIRAP (ENSGALG00010024026) #30	DCPS (ENSGALG00010024042) #31	ST3GAL4 (ENSGALG00010024062) #32	KIRREL3 (ENSGALG00010024078) #33	ENSGALG00010024084	ETS1 (ENSGALG00010023311)	FLI1 (ENSGALG00010023337)
Japanese quail	MODERN SPECIES	16	FEZ1 (ENSCJPG00005005389)	PKNOX2 (ENSCJPG00005005396)	ENSCJPG00005005411	SLC37A2 (ENSCJPG00005005418)	ENSCJPG00005005429	HEPACAM (ENSCJPG00005005431)	ENSCJPG00005005446	ENSCJPG00005005447	MSANTD2 (ENSCJPG00005005523)	ESAM (ENSCJPG00005005527)	NRGN (ENSCJPG00005005533)	ENSCJPG00005005536	PANX3 (ENSCJPG00005005541)	RPUSD4 (ENSCJPG00005005543) #26	PUS3 (ENSCJPG00005005547) #21	HYLS1 (ENSCJPG00005005550) #22	ENSCJPG00005005551	CDON (ENSCJPG00005005577) #24	CHEK1 (ENSCJPG00005005689)	STT3A (ENSCJPG00005005693)	EI24 (ENSCJPG00005005702)	SRPRA (ENSCJPG00005005708) #28	FAM118B (ENSCJPG00005005710) #27	DCPS (ENSCJPG00005005716) #31	TIRAP (ENSCJPG00005005718) #30	ST3GAL4 (ENSCJPG00005005720) #32	KIRREL3 (ENSCJPG00005005735) #33	ETS1 (ENSCJPG00005006092)	FLI1 (ENSCJPG00005006095)	KCNJ1 (ENSCJPG00005006098)	KCNJ5 (ENSCJPG00005006100)
Anatidae	ANCESTRAL SPECIES	30	ENSGT00940000157114 #24	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000168265	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00440000039324	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22
Duck	MODERN SPECIES	16	EI24 (ENSAPLG00000015775)	STT3A (ENSAPLG00000015299)	CDON (ENSAPLG00000014642) #24	FEZ1 (ENSAPLG00000017289)	PKNOX2 (ENSAPLG00000013813)	TMEM218 (ENSAPLG00000031233)	SLC37A2 (ENSAPLG00000011879)	ENSAPLG00000012363	ENSAPLG00000012529	ROBO3 (ENSAPLG00000012600)	MSANTD2 (ENSAPLG00000012824)	ESAM (ENSAPLG00000018034)	NRGN (ENSAPLG00000013153)	PANX3 (ENSAPLG00000013224)	RPUSD4 (ENSAPLG00000013250) #26	HYLS1 (ENSAPLG00000000881) #22	PUS3 (ENSAPLG00000013285) #21	ANKMY1 (ENSAPLG00000013399)
Pink-footed goose	MODERN SPECIES	270	CDON (ENSABRG00000018975) #24	FEZ1 (ENSABRG00000018964)	PKNOX2 (ENSABRG00000018955)	ENSABRG00000018949	SLC37A2 (ENSABRG00000018926)	ENSABRG00000018914	HEPACAM (ENSABRG00000018908)	ENSABRG00000018903	ENSABRG00000018884	MSANTD2 (ENSABRG00000018874)	ESAM (ENSABRG00000018863)	NRGN (ENSABRG00000018861)	PANX3 (ENSABRG00000018854)	RPUSD4 (ENSABRG00000018849) #26	PUS3 (ENSABRG00000018842) #21	HYLS1 (ENSABRG00000018839) #22
African ostrich	MODERN SPECIES	854							ENSSCUG00000018226	ENSSCUG00000018229	PKNOX2 (ENSSCUG00000018236)	ENSSCUG00000018238	ENSSCUG00000018240	MSANTD2 (ENSSCUG00000018244)	SIAE (ENSSCUG00000018246)	PANX3 (ENSSCUG00000018249)	RPUSD4 (ENSSCUG00000018252) #26	HYLS1 (ENSSCUG00000018254) #22	PUS3 (ENSSCUG00000018255) #21	DDX25 (ENSSCUG00000018259) #23	ENSSCUG00000018263	CDON (ENSSCUG00000018267) #24	STT3A (ENSSCUG00000018272)	EI24 (ENSSCUG00000018275)	SRPRA (ENSSCUG00000018277) #28	FAM118B (ENSSCUG00000018278) #27	DCPS (ENSSCUG00000018279) #31	ST3GAL4 (ENSSCUG00000018281) #32	KIRREL3 (ENSSCUG00000018295) #33	ENSSCUG00000018297
Australian saltwater crocodile	MODERN SPECIES	54								MSANTD2 (ENSCPRG00005000857)	ESAM (ENSCPRG00005000873)	VSIG2 (ENSCPRG00005000879)	NRGN (ENSCPRG00005000893)	SPA17 (ENSCPRG00005000897)	PANX3 (ENSCPRG00005000907)	RPUSD4 (ENSCPRG00005000913) #26	PUS3 (ENSCPRG00005000922) #21	HYLS1 (ENSCPRG00005000923) #22	DDX25 (ENSCPRG00005000929) #23	CDON (ENSCPRG00005001015) #24	CHEK1 (ENSCPRG00005001055)	STT3A (ENSCPRG00005001061)	EI24 (ENSCPRG00005001082)	SRPRA (ENSCPRG00005001101) #28	FOXRED1 (ENSCPRG00005001106) #29	ENSCPRG00005001111	TIRAP (ENSCPRG00005001117) #30	DCPS (ENSCPRG00005001120) #31	ST3GAL4 (ENSCPRG00005001160) #32	KIRREL3 (ENSCPRG00005001188) #33	ETS1 (ENSCPRG00005001209)	FLI1 (ENSCPRG00005001218)	KCNJ1 (ENSCPRG00005001223)
Cryptodira	ANCESTRAL SPECIES	32	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000155457	ENSGT00940000164559.A	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
Testudinoidea	ANCESTRAL SPECIES	29	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
Emydidae	ANCESTRAL SPECIES	42	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT01070000257138	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
painted turtle	MODERN SPECIES	758	TMEM218 (ENSCPBG00000011410)	SLC37A2 (ENSCPBG00000011407)	ENSCPBG00000011404	HEPACAM (ENSCPBG00000011400)	ENSCPBG00000011395	ENSCPBG00000011392	MSANTD2 (ENSCPBG00000011390)	ESAM (ENSCPBG00000011387)	VSIG2 (ENSCPBG00000011385)	NRGN (ENSCPBG00000011379)	SPA17 (ENSCPBG00000011376)	SIAE (ENSCPBG00000011181)	PANX3 (ENSCPBG00000011177)	RPUSD4 (ENSCPBG00000011175) #26	PUS3 (ENSCPBG00000011173) #21	HYLS1 (ENSCPBG00000011169) #22	DDX25 (ENSCPBG00000011165) #23	CDON (ENSCPBG00000011161) #24	CHEK1 (ENSCPBG00000011154)	STT3A (ENSCPBG00000011151)	EI24 (ENSCPBG00000011146)	ENSCPBG00000011142	ENSCPBG00000011139	FAM118B (ENSCPBG00000011133) #27	SRPRA (ENSCPBG00000011128) #28	FOXRED1 (ENSCPBG00000011127) #29	ENSCPBG00000011122	TIRAP (ENSCPBG00000011121) #30	DCPS (ENSCPBG00000011119) #31	ST3GAL4 (ENSCPBG00000011112) #32	KIRREL3 (ENSCPBG00000011107) #33
Three-toed box turtle	MODERN SPECIES	167	ENSTMTG00000005309	ENSTMTG00000005582	HEPACAM (ENSTMTG00000005624)	ENSTMTG00000005789	ENSTMTG00000005857	ENSTMTG00000005870	ENSTMTG00000005927	MSANTD2 (ENSTMTG00000005934)	ESAM (ENSTMTG00000005953)	VSIG2 (ENSTMTG00000006033)	NRGN (ENSTMTG00000006081)	SIAE (ENSTMTG00000006094)	PANX3 (ENSTMTG00000006127)	RPUSD4 (ENSTMTG00000006183) #26	PUS3 (ENSTMTG00000006216) #21	HYLS1 (ENSTMTG00000006229) #22	CDON (ENSTMTG00000006253) #24	CHEK1 (ENSTMTG00000006294)	STT3A (ENSTMTG00000006332)	EI24 (ENSTMTG00000006364)	ENSTMTG00000006394	FAM118B (ENSTMTG00000006402) #27	SRPRA (ENSTMTG00000006416) #28	FOXRED1 (ENSTMTG00000006492) #29	ENSTMTG00000003227	DCPS (ENSTMTG00000003247) #31	ST3GAL4 (ENSTMTG00000003258) #32	ENSTMTG00000003284	KIRREL3 (ENSTMTG00000003344) #33	ETS1 (ENSTMTG00000003573)	FLI1 (ENSTMTG00000003641)
Testudinidae	ANCESTRAL SPECIES	35	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519
Abingdon island giant tortoise	MODERN SPECIES	2741					ENSCABG00000013376	ENSCABG00000013377	MSANTD2 (ENSCABG00000013381)	ESAM (ENSCABG00000013385)	VSIG2 (ENSCABG00000013483)	NRGN (ENSCABG00000013484)	SPA17 (ENSCABG00000013485)	SIAE (ENSCABG00000013486)	PANX3 (ENSCABG00000013548)	RPUSD4 (ENSCABG00000013553) #26	PUS3 (ENSCABG00000013556) #21	HYLS1 (ENSCABG00000013558) #22	DDX25 (ENSCABG00000013559) #23	CDON (ENSCABG00000013573) #24	CHEK1 (ENSCABG00000013578)	STT3A (ENSCABG00000013579)	EI24 (ENSCABG00000013581)	FAM118B (ENSCABG00000013583) #27	SRPRA (ENSCABG00000013584) #28	FOXRED1 (ENSCABG00000013588) #29	ENSCABG00000013620	TIRAP (ENSCABG00000013640) #30	ENSCABG00000013643	DCPS (ENSCABG00000013645) #31
Goode s thornscrub tortoise	MODERN SPECIES	10	SLC37A2 (ENSGEVG00005020497)	ENSGEVG00005020512	HEPACAM (ENSGEVG00005020530)	ENSGEVG00005020554	ENSGEVG00005020560	ENSGEVG00005020565	ENSGEVG00005020575	MSANTD2 (ENSGEVG00005020579)	ESAM (ENSGEVG00005020586)	VSIG2 (ENSGEVG00005020594)	NRGN (ENSGEVG00005020599)	SPA17 (ENSGEVG00005020603)	SIAE (ENSGEVG00005020636)	PANX3 (ENSGEVG00005020667)	RPUSD4 (ENSGEVG00005020671) #26	HYLS1 (ENSGEVG00005020674) #22	PUS3 (ENSGEVG00005020677) #21	DDX25 (ENSGEVG00005020684) #23	ENSGEVG00005020690	CDON (ENSGEVG00005020693) #24	CHEK1 (ENSGEVG00005020700)	STT3A (ENSGEVG00005020707)	EI24 (ENSGEVG00005020718)	ENSGEVG00005020721	FAM118B (ENSGEVG00005020727) #27	SRPRA (ENSGEVG00005020737) #28	FOXRED1 (ENSGEVG00005020751) #29	ENSGEVG00005020769	TIRAP (ENSGEVG00005020775) #30	DCPS (ENSGEVG00005020779) #31	ST3GAL4 (ENSGEVG00005020785) #32
Chinese turtle	MODERN SPECIES	1026									ENSPSIG00000000101	ENSPSIG00000015294	ENSPSIG00000014838	HEPACAM (ENSPSIG00000014807)	NRGN (ENSPSIG00000000099)	PANX3 (ENSPSIG00000014460)	RPUSD4 (ENSPSIG00000014268) #26	HYLS1 (ENSPSIG00000000088) #22	PUS3 (ENSPSIG00000013961) #21	DDX25 (ENSPSIG00000012606) #23	CDON (ENSPSIG00000010761) #24	ENSPSIG00000010495	PKNOX2 (ENSPSIG00000009954)	FEZ1 (ENSPSIG00000009340)	ZBTB44 (ENSPSIG00000008340)	ADAMTS8 (ENSPSIG00000007280)	ADAMTS15 (ENSPSIG00000011769)	SNX19 (ENSPSIG00000010876)
Lepidosauria	ANCESTRAL SPECIES	20	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33
Episquamata	ANCESTRAL SPECIES	12	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161418	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT01030000237679	ENSGT00940000162037.a	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30
Laterata	ANCESTRAL SPECIES	15	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712 #23	ENSGT00940000163088	ENSGT00940000157114 #24	ENSGT00940000161418	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT01030000237679	ENSGT00940000162037.a	ENSGT00390000017162.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058
Common wall lizard	MODERN SPECIES	6	ENSPMRG00000017276	TMEM218 (ENSPMRG00000017269)	SLC37A2 (ENSPMRG00000017253)	ENSPMRG00000017240	HEPACAM (ENSPMRG00000017234)	ENSPMRG00000017208	ENSPMRG00000017166	MSANTD2 (ENSPMRG00000017157)	ESAM (ENSPMRG00000017150)	VSIG2 (ENSPMRG00000017148)	NRGN (ENSPMRG00000017146)	ENSPMRG00000017141	SIAE (ENSPMRG00000017130)	PANX3 (ENSPMRG00000017124)	RPUSD4 (ENSPMRG00000017119) #26	HYLS1 (ENSPMRG00000017116) #22	PUS3 (ENSPMRG00000017110) #21	DDX25 (ENSPMRG00000017105) #23	VSIG10L2 (ENSPMRG00000017096)	CDON (ENSPMRG00000021738) #24	ENSPMRG00000021688	ENSPMRG00000021678	CHEK1 (ENSPMRG00000021627)	STT3A (ENSPMRG00000021608)	EI24 (ENSPMRG00000021594)	ENSPMRG00000021588	ENSPMRG00000021583	ENSPMRG00000021576	ENSPMRG00000021554	ENSPMRG00000021534	ENSPMRG00000021527
Argentine black and white tegu	MODERN SPECIES	136						ENSSMRG00000008954	ROBO3 (ENSSMRG00000008961)	MSANTD2 (ENSSMRG00000008985)	ESAM (ENSSMRG00000008989)	VSIG2 (ENSSMRG00000008991)	NRGN (ENSSMRG00000008992)	SPA17 (ENSSMRG00000008993)	SIAE (ENSSMRG00000008994)	PANX3 (ENSSMRG00000008995)	RPUSD4 (ENSSMRG00000008998) #26	HYLS1 (ENSSMRG00000009000) #22	PUS3 (ENSSMRG00000009003) #21	DDX25 (ENSSMRG00000009005) #23	CDON (ENSSMRG00000009007) #24	ENSSMRG00000009025	ENSSMRG00000009026	ENSSMRG00000009028	ENSSMRG00000009030	CHEK1 (ENSSMRG00000009035)	STT3A (ENSSMRG00000009036)	EI24 (ENSSMRG00000009039)	ENSSMRG00000009041	ENSSMRG00000009042	ENSSMRG00000009043	ENSSMRG00000009044	ENSSMRG00000009045
Toxicofera	ANCESTRAL SPECIES	20	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712 #23	ENSGT00940000157114 #24	ENSGT00940000161418	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT01030000237679	ENSGT00940000162037.a	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00940000166058	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32
Elapidae	ANCESTRAL SPECIES	15	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22	ENSGT00940000159712.c #23	ENSGT00940000157114 #24	ENSGT00940000161418	ENSGT00940000159682	ENSGT00940000156655	ENSGT00390000018633	ENSGT00940000164331.j.d	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126.c #33	ENSGT00940000159519
Elapidae_a	ANCESTRAL SPECIES	42	ENSGT00390000017627.b.l	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712.c #23	ENSGT00940000157114 #24
Blue-lipped sea krait	MODERN SPECIES	2883												SPA17 (ENSLLTG00000017174)	SIAE (ENSLLTG00000017172)	PANX3 (ENSLLTG00000017170)	RPUSD4 (ENSLLTG00000017167) #26	HYLS1 (ENSLLTG00000017165) #22	PUS3 (ENSLLTG00000017162) #21	DDX25 (ENSLLTG00000017159) #23
Acanthophiinae	ANCESTRAL SPECIES	54	ENSGT00390000017627.b.l	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT01100000263551.a	ENSGT00940000164559.A	ENSGT00940000155457	ENSGT00390000013593	ENSGT00940000157231	ENSGT00940000161544	ENSGT00440000039324	ENSGT00440000039164	ENSGT00390000010608	ENSGT00940000153972.B	ENSGT00940000158436 #26	ENSGT00390000008848 #22	ENSGT00950000183160.A #21	ENSGT00940000159712.c #23	ENSGT00940000157114 #24
Mainland tiger snake	MODERN SPECIES	37	PKNOX2 (ENSNSUG00000003671)	SLC37A2 (ENSNSUG00000003679)	HEPACAM (ENSNSUG00000004113)	ENSNSUG00000004213	ENSNSUG00000004216	ROBO3 (ENSNSUG00000004233)	MSANTD2 (ENSNSUG00000004300)	ENSNSUG00000004303	VSIG2 (ENSNSUG00000004313)	NRGN (ENSNSUG00000004333)	SPA17 (ENSNSUG00000004337)	SIAE (ENSNSUG00000004355)	PANX3 (ENSNSUG00000004780)	RPUSD4 (ENSNSUG00000004781) #26	PUS3 (ENSNSUG00000004782) #21	HYLS1 (ENSNSUG00000004786) #22	ENSNSUG00000004789 #23	ENSNSUG00000004793 #23	CDON (ENSNSUG00000004794) #24
Eastern brown snake	MODERN SPECIES	101	PKNOX2 (ENSPTXG00000010506)	TMEM218 (ENSPTXG00000010505)	SLC37A2 (ENSPTXG00000010503)	HEPACAM (ENSPTXG00000010458)	ENSPTXG00000010457	ENSPTXG00000010456	ENSPTXG00000010441	MSANTD2 (ENSPTXG00000010434)	ENSPTXG00000010433	VSIG2 (ENSPTXG00000010430)	NRGN (ENSPTXG00000010428)	SPA17 (ENSPTXG00000010427)	SIAE (ENSPTXG00000010426)	PANX3 (ENSPTXG00000010425)	RPUSD4 (ENSPTXG00000010424) #26	HYLS1 (ENSPTXG00000010423) #22	PUS3 (ENSPTXG00000010422) #21	DDX25 (ENSPTXG00000010315) #23	CDON (ENSPTXG00000010312) #24	ENSPTXG00000010309
Indian cobra	MODERN SPECIES	7	SLC37A2 (ENSNNAG00000006788)	ENSNNAG00000006912	HEPACAM (ENSNNAG00000006956)	ENSNNAG00000006976	ENSNNAG00000006986	ROBO3 (ENSNNAG00000007013)	MSANTD2 (ENSNNAG00000007118)	ESAM (ENSNNAG00000007140)	VSIG2 (ENSNNAG00000007186)	NRGN (ENSNNAG00000007230)	SPA17 (ENSNNAG00000007245)	SIAE (ENSNNAG00000007276)	PANX3 (ENSNNAG00000007298)	RPUSD4 (ENSNNAG00000007311) #26	PUS3 (ENSNNAG00000007325) #21	HYLS1 (ENSNNAG00000007336) #22	DDX25 (ENSNNAG00000007359) #23	CDON (ENSNNAG00000007410) #24	ENSNNAG00000007482	ENSNNAG00000007494	ENSNNAG00000007516	ENSNNAG00000007549	CHEK1 (ENSNNAG00000007589)	STT3A (ENSNNAG00000007704)	EI24 (ENSNNAG00000008069)	ENSNNAG00000008161	ENSNNAG00000008265	FAM118B (ENSNNAG00000008311) #27	SRPRA (ENSNNAG00000008366) #28	FOXRED1 (ENSNNAG00000008414) #29	TIRAP (ENSNNAG00000008490) #30
Lizard	MODERN SPECIES	936										NRGN (ENSACAG00000025439)	SPA17 (ENSACAG00000000215)	SIAE (ENSACAG00000000205)	PANX3 (ENSACAG00000000200)	ENSACAG00000000189 #26	PUS3 (ENSACAG00000000186) #21	HYLS1 (ENSACAG00000000185) #22	DDX25 (ENSACAG00000000173) #23	CDON (ENSACAG00000000165) #24	ENSACAG00000000163	CHEK1 (ENSACAG00000000155)	ENSACAG00000000136	EI24 (ENSACAG00000000120)	ENSACAG00000043490	ENSACAG00000000111	ENSACAG00000041230	ENSACAG00000039507	ENSACAG00000000113	ENSACAG00000000114	ENSACAG00000024806	ENSACAG00000029574	FAM118B (ENSACAG00000000109) #27
Anura	ANCESTRAL SPECIES	285								ENSGT00940000160447	ENSGT00390000009109	ENSGT00940000164039	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000160533	ENSGT00940000158436 #26	ENSGT00950000183160.A #21	ENSGT00390000008848 #22
Frog	MODERN SPECIES	9	ENSXETG00000038167	septin12 (ENSXETG00000009151)	ENSXETG00000046484	ENSXETG00000046559	mss51 (ENSXETG00000009165)	cfap70 (ENSXETG00000024528)	t2r52 (ENSXETG00000030742)	tgfb1i1 (ENSXETG00000018791)	armc5 (ENSXETG00000018792)	ENSXETG00000038796	rnf25 (ENSXETG00000018815)	stk36 (ENSXETG00000018823)	slc5a2 (ENSXETG00000018824)	rpusd4 (ENSXETG00000034725) #26	pus3 (ENSXETG00000024532) #21	hyls1 (ENSXETG00000035532) #22	pisd-like.2 (ENSXETG00000018827)	rusf1 (ENSXETG00000018831)	prr14 (ENSXETG00000038187)	erich1 (ENSXETG00000033901)	fbrs (ENSXETG00000018837)	srcap (ENSXETG00000018840)	phkg2 (ENSXETG00000021132)	cfap119 (ENSXETG00000037665)	rnf40 (ENSXETG00000018858)	ENSXETG00000018875	ENSXETG00000044832	dctpp1 (ENSXETG00000049214)	qprt (ENSXETG00000018901)	mylpf (ENSXETG00000024534)	tbc1d10b (ENSXETG00000018905)
Coelacanth	MODERN SPECIES	382											CEP43 (ENSLACG00000001390)	TBP (ENSLACG00000005118)	PDCD2 (ENSLACG00000005872)	ENSLACG00000006227	GPATCH11 (ENSLACG00000008344)	ENSLACG00000022552 #22	MRPL4 (ENSLACG00000009255)	ENSLACG00000009811	SLC30A6 (ENSLACG00000010855)	ENSLACG00000022642	GGPS1 (ENSLACG00000012397)	TBCE (ENSLACG00000012659)	B3GALNT2 (ENSLACG00000013209)	RBM34 (ENSLACG00000013628)	NUP133 (ENSLACG00000013878)	TOMM20 (ENSLACG00000014544)	TBXT (ENSLACG00000015449)	TTC13 (ENSLACG00000015671)	ARV1 (ENSLACG00000016152)	C1orf131 (ENSLACG00000016190)	GNPAT (ENSLACG00000016223)
Actinopterygii	ANCESTRAL SPECIES	73	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000157865	ENSGT00940000167863	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902	ENSGT00940000165200	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00390000015845	ENSGT00940000153968.a.b.a	ENSGT00420000029824	ENSGT00940000154906.C.d	ENSGT00940000160084	ENSGT01030000235112	ENSGT00940000154289.B	ENSGT00940000155507.a.b	ENSGT00940000161899	ENSGT00940000154209.a.b	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747
Neopterygii	ANCESTRAL SPECIES	81	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000157865	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902	ENSGT00940000165200	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00390000015845	ENSGT00940000153968.a.b.a	ENSGT00420000029824	ENSGT00940000154906.C.d	ENSGT00940000160084	ENSGT01030000235112	ENSGT00940000154289.B	ENSGT00940000154209.a.b	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747	ENSGT01100000263502.A.a.b	ENSGT00940000161744
Osteoglossocephalai	ANCESTRAL SPECIES	820																ENSGT00390000008848 #22	ENSGT00390000014512
Clupeocephala	ANCESTRAL SPECIES	37	ENSGT00990000204616	ENSGT00390000002789	ENSGT00980000199991	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512
Otomorpha	ANCESTRAL SPECIES	527											ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512
Clupeiformes	ANCESTRAL SPECIES	266											ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00390000015948.b	ENSGT00390000009265	ENSGT00940000156270	ENSGT00940000161451.a.a	ENSGT01030000235061	ENSGT00730000111057.d	ENSGT00940000160024	ENSGT00940000157367.a.b	ENSGT00510000048561	ENSGT00940000159653.g.b	ENSGT00940000153560.b.b.b.h	ENSGT00940000158756	ENSGT01060000248591.a.a.a.b.b	ENSGT00940000166105
Atlantic herring	MODERN SPECIES	18	ENSCHAG00000025737	pglyrp2 (ENSCHAG00000025746)	CHST1 (ENSCHAG00000025753)	CHST1 (ENSCHAG00000025755)	myh11a (ENSCHAG00000025998)	cep20 (ENSCHAG00000027538)	ENSCHAG00000027541	coq7 (ENSCHAG00000027574)	notum2 (ENSCHAG00000002740)	ENSCHAG00000002924	myom2a (ENSCHAG00000003069)	ENSCHAG00000005895	lgsn (ENSCHAG00000005933)	ptp4a1 (ENSCHAG00000005953)	ENSCHAG00000006014	ENSCHAG00000006050 #22	mrpl4 (ENSCHAG00000006062)	pdcd4b (ENSCHAG00000006130)	bbip1 (ENSCHAG00000007014)	shoc2 (ENSCHAG00000007026)	adra2a (ENSCHAG00000007044)	ENSCHAG00000007062	znf207b (ENSCHAG00000007086)	ENSCHAG00000007097	ENSCHAG00000007213	ncf4 (ENSCHAG00000007221)	pvalb7 (ENSCHAG00000007266)	pla2g6 (ENSCHAG00000007281)	cbx6a (ENSCHAG00000007811)	nptxrb (ENSCHAG00000007834)	ENSCHAG00000007855
Denticle herring	MODERN SPECIES	13	ncf4 (ENSDCDG00000002348)	baiap2l2b (ENSDCDG00000002350)	pla2g6 (ENSDCDG00000002351)	cbx6a (ENSDCDG00000002355)	PIK3R6 (ENSDCDG00000002359)	PIK3R5 (ENSDCDG00000002371)	ENSDCDG00000002376	ENSDCDG00000002385	ENSDCDG00000002388	cfap52 (ENSDCDG00000002396)	usp43a (ENSDCDG00000002403)	myom2a (ENSDCDG00000002544)	lgsn (ENSDCDG00000005510)	ptp4a1 (ENSDCDG00000005511)	col9a1a (ENSDCDG00000005521)	ENSDCDG00000005526 #22	mrpl4 (ENSDCDG00000005531)	pdcd4b (ENSDCDG00000005544)	bbip1 (ENSDCDG00000005612)	shoc2 (ENSDCDG00000005616)	adra2a (ENSDCDG00000005618)	ENSDCDG00000005621	ENSDCDG00000005623	cd7al (ENSDCDG00000005626)	znf207b (ENSDCDG00000005631)	ENSDCDG00000005634	ENSDCDG00000005635	tmem178a (ENSDCDG00000005640)	slc8a1a (ENSDCDG00000005672)	mala.1 (ENSDCDG00000005711)	pgap4 (ENSDCDG00000005720)
Otophysi	ANCESTRAL SPECIES	30					ENSGT00940000165310	ENSGT00940000156972.d	ENSGT00730000111116	ENSGT00940000156082.a.b	ENSGT01100000263555.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a	ENSGT00940000157057.e	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00390000018879	ENSGT00940000155258	ENSGT00950000182969.B.c.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.b	ENSGT01090000260683	ENSGT00940000162183	ENSGT00940000156395.e	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776
Characiphysae	ANCESTRAL SPECIES	20	ENSGT00940000153518.d.b.a.b	ENSGT00940000159262.d	ENSGT00940000155953.q.a	ENSGT00950000182883.b.b	ENSGT00940000165310	ENSGT00940000156972.d	ENSGT00730000111116	ENSGT00940000156082.a.b	ENSGT01100000263555.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a	ENSGT00940000157057.e	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00390000018879	ENSGT00940000155258	ENSGT00950000182969.B.c.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.b	ENSGT01090000260683	ENSGT00940000162183	ENSGT00940000156395.e	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776
Characiphysae_b	ANCESTRAL SPECIES	27	ENSGT00940000153518.d.b.a.b	ENSGT00940000159262.d	ENSGT00940000155953.q.a	ENSGT00950000182883.b.b	ENSGT00940000165310	ENSGT00940000156972.d	ENSGT00730000111116	ENSGT00940000156082.a.b	ENSGT01100000263555.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a	ENSGT00940000157057.e	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00390000018879	ENSGT00940000155258	ENSGT00950000182969.B.c.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.b	ENSGT01090000260683	ENSGT00940000162183	ENSGT00940000156395.e	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00940000154902.nb.b	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b
Characoidei	ANCESTRAL SPECIES	16	ENSGT00940000153518.d.b.a.b	ENSGT00940000159262.d	ENSGT00940000155953.q.a	ENSGT00950000182883.b.b	ENSGT00940000165310	ENSGT00940000156972.d	ENSGT00730000111116	ENSGT00940000156082.a.b	ENSGT01100000263555.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a	ENSGT00940000157057.e	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00390000018879	ENSGT00940000155258	ENSGT00950000182969.B.c.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.b	ENSGT01090000260683	ENSGT00940000162183	ENSGT00940000156395.e	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00940000154902.nb.b	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b
Red-bellied piranha	MODERN SPECIES	279								ENSPNAG00000010225	ITGB6 (ENSPNAG00000010320)	ENSPNAG00000010347	LY75 (ENSPNAG00000011329)	myom2a (ENSPNAG00000011724)	lgsn (ENSPNAG00000011744)	ptp4a1 (ENSPNAG00000001910)	ENSPNAG00000001921	ENSPNAG00000001925 #22	mrpl4 (ENSPNAG00000011785)	zgc:77929 (ENSPNAG00000011798)	krt94 (ENSPNAG00000001937)	krt98 (ENSPNAG00000011817)	krt15 (ENSPNAG00000011824)	krt99 (ENSPNAG00000001965)	ENSPNAG00000001969	ENSPNAG00000011893	jupa (ENSPNAG00000002016)	cdc6 (ENSPNAG00000002042)	ENSPNAG00000011994	ENSPNAG00000012011	ENSPNAG00000012071	sp2 (ENSPNAG00000002098)	socs7 (ENSPNAG00000002131)
Mexicana tetra	MODERN SPECIES	20	ENSAMXG00000015268	furina (ENSAMXG00000034473)	fes (ENSAMXG00000015161)	rhcga (ENSAMXG00000015098)	rhcga (ENSAMXG00000035292)	psmd14 (ENSAMXG00000002142)	RBMS1 (ENSAMXG00000002146)	ENSAMXG00000033689	ITGB6 (ENSAMXG00000039846)	PLA2R1 (ENSAMXG00000002156)	LY75 (ENSAMXG00000002159)	myom2a (ENSAMXG00000002164)	lgsn (ENSAMXG00000002166)	ptp4a1 (ENSAMXG00000043127)	col9a1a (ENSAMXG00000002187)	ENSAMXG00000002228 #22	mrpl4 (ENSAMXG00000002236)	zgc:77929 (ENSAMXG00000025764)	fth1b (ENSAMXG00000042038)	ENSAMXG00000031232	ect2 (ENSAMXG00000016621)	b3gnt5a (ENSAMXG00000025900)	ENSAMXG00000037582	ENSAMXG00000043252	PHKA2 (ENSAMXG00000007946)	ncbp2 (ENSAMXG00000041812)	senp5 (ENSAMXG00000042815)	anos1b (ENSAMXG00000008019)	si:ch211-262h13.5 (ENSAMXG00000008040)	ENSAMXG00000030621	ENSAMXG00000008063
Channel catfish	MODERN SPECIES	1	LIMS1 (ENSIPUG00000009395)	ENSIPUG00000009516	spoplb (ENSIPUG00000009698)	NXPH2 (ENSIPUG00000009723)	SLC4A10 (ENSIPUG00000009737)	TBR1 (ENSIPUG00000009859)	psmd14 (ENSIPUG00000010063)	RBMS1 (ENSIPUG00000010131)	ITGB6 (ENSIPUG00000010205)	PLA2R1 (ENSIPUG00000010245)	LY75 (ENSIPUG00000010378)	myom2a (ENSIPUG00000011210)	lgsn (ENSIPUG00000011476)	ptp4a1 (ENSIPUG00000011506)	col9a1a (ENSIPUG00000011540)	hyls1 (ENSIPUG00000011679) #22	mrpl4 (ENSIPUG00000011705)	zgc:77929 (ENSIPUG00000011785)	ENSIPUG00000011799	npepps (ENSIPUG00000011828)	mrpl45 (ENSIPUG00000011882)	ENSIPUG00000011899	socs7 (ENSIPUG00000011937)	sp2 (ENSIPUG00000012013)	abcc10 (ENSIPUG00000012074)	ENSIPUG00000012295	WIPF2 (ENSIPUG00000012308)	cdc6 (ENSIPUG00000012345)	jupa (ENSIPUG00000012370)	ENSIPUG00000012460	ENSIPUG00000012522
Cyprinoidei	ANCESTRAL SPECIES	68	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156972.d	ENSGT00940000156994	ENSGT00730000111116	ENSGT00940000156082.a.b	ENSGT01100000263555.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a	ENSGT00940000157057.e	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00390000018879	ENSGT00940000155258.g.b	ENSGT00940000155258.g.a	ENSGT00950000182969.B.c.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.b	ENSGT01090000260683	ENSGT00940000162183	ENSGT00940000156395.e	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00940000164531.k	ENSGT00940000159590	ENSGT00940000156314.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1031																ENSGT00390000008848.i #22	ENSGT00390000014512.b	ENSGT00390000018879.b	ENSGT00940000155258.g.b.b
Goldfish	MODERN SPECIES	2	med16 (ENSCARG00000008675)	TMEM259 (ENSCARG00000008365)	GRIN3B (ENSCARG00000008049)	ENSCARG00000008037	si:ch211-1a19.2 (ENSCARG00000008027)	arrdc2 (ENSCARG00000008016)	ENSCARG00000008006	homer3b (ENSCARG00000007962)	ENSCARG00000007946	MAST3 (ENSCARG00000007649)	atp5f1b (ENSCARG00000007566)	mknk1 (ENSCARG00000007401)	mob3c (ENSCARG00000007372)	ptp4a1 (ENSCARG00000007355)	ENSCARG00000007319	ENSCARG00000007307 #22	zgc:77929 (ENSCARG00000007301)	krt93 (ENSCARG00000007290)	ENSCARG00000007288	ENSCARG00000006376	ENSCARG00000006234	clcn4 (ENSCARG00000005653)	ENSCARG00000005620	ENSCARG00000005619	SHROOM2 (ENSCARG00000005613)	ENSCARG00000005612	gnb4b (ENSCARG00000005604)	mfn1b (ENSCARG00000005310)	ENSCARG00000005268	ero1b (ENSCARG00000002847)	tbce (ENSCARG00000002653)
Cyprininae_a	ANCESTRAL SPECIES	159	ENSGT00390000007212.f	ENSGT00940000165636.b	ENSGT00950000182964.a.b.b.a.b.a.d	ENSGT00940000164492.a.b.h	ENSGT00940000158959.b.a.a	ENSGT00610000086173.n	ENSGT00730000111231.l	ENSGT00940000159238.j	ENSGT00390000010652.D.a.a.c	ENSGT00940000166148.b	ENSGT01050000244842.a.b.b.a.a.a.j	ENSGT00940000157057.e.b	ENSGT00390000013639.b	ENSGT00940000154406.h	ENSGT00940000157935.a.b	ENSGT00390000008848.i #22	ENSGT00390000014512.b	ENSGT00390000018879.b	ENSGT00940000155258.g.b.b	ENSGT00940000155258.g.a.a	ENSGT00950000182969.B.c.a.a.a.w	ENSGT00950000182969.B.c.a.a.b.a.b.d	ENSGT00950000182969.B.c.b.b	ENSGT01090000260683	ENSGT00940000162183.g	ENSGT00940000156395.e.b	ENSGT00530000063498.A.d	ENSGT00940000155557.jc.b.b	ENSGT00940000159590.n	ENSGT00940000156314.b.c	ENSGT00940000160776.m
Common carp reference	MODERN SPECIES	13	ENSCCRG00000081859	larp6b (ENSCCRG00000061626)	gadd45ba (ENSCCRG00000047780)	ENSCCRG00000044806	ENSCCRG00000082836	rab3ab (ENSCCRG00000055914)	lsm4 (ENSCCRG00000044741)	klhl26 (ENSCCRG00000075067)	ENSCCRG00000042315	comp (ENSCCRG00000015241)	ENSCCRG00000032380	ENSCCRG00000063473	myom2a (ENSCCRG00000028162)	lgsn (ENSCCRG00000028100)	col9a1a (ENSCCRG00000002573)	ENSCCRG00000015979 #22	mrpl4 (ENSCCRG00000015918)	zgc:77929 (ENSCCRG00000066904)	krt93 (ENSCCRG00000049632)	krt94 (ENSCCRG00000015903)	krt98 (ENSCCRG00000073430)	krt15 (ENSCCRG00000046334)	krt99 (ENSCCRG00000015883)	ENSCCRG00000015877	ENSCCRG00000015139	jupa (ENSCCRG00000014259)	cdc6 (ENSCCRG00000028069)	ENSCCRG00000074632	sp2 (ENSCCRG00000007618)	socs7 (ENSCCRG00000040454)	ENSCCRG00000040476
Golden-line barbel	MODERN SPECIES	228	larp6b (ENSSGRG00000011991)	gadd45ba (ENSSGRG00000011990)	ENSSGRG00000011988	ENSSGRG00000011366	rab3ab (ENSSGRG00000011356)	lsm4 (ENSSGRG00000011355)	ddx49 (ENSSGRG00000011352)	klhl26 (ENSSGRG00000011350)	ENSSGRG00000011306	comp (ENSSGRG00000011305)	ENSSGRG00000010749	myom2a (ENSSGRG00000010279)	ENSSGRG00000010267	lgsn (ENSSGRG00000010265)	ptp4a1 (ENSSGRG00000010168)	ENSSGRG00000010166 #22	mrpl4 (ENSSGRG00000010150)
Cyprininae	ANCESTRAL SPECIES	125	ENSGT00730000111116.d	ENSGT00940000156082.a.b.d	ENSGT01100000263555.a.a.a.g	ENSGT01100000263555.a.a.a.h	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a.j	ENSGT00940000157057.e.b	ENSGT00390000013639.b	ENSGT00940000154406.h	ENSGT00940000157935.a.b	ENSGT01050000244842.a.b.b.a.a.a.i	ENSGT00940000157057.e.a	ENSGT00390000013639.a	ENSGT00940000154406.g	ENSGT00940000157935.a.a	ENSGT00390000008848.j #22	ENSGT00390000014512.a	ENSGT00390000018879.a	ENSGT00940000155258.g.b.a	ENSGT00940000155258.g.a	ENSGT00950000182969.B.c.a.a.a.x	ENSGT00950000182969.B.c.a.a.b.a.b.c	ENSGT00950000182969.B.c.b.a	ENSGT00950000182969.B.c.a.a.a.w	ENSGT00950000182969.B.c.a.a.b.a.b.d	ENSGT00950000182969.B.c.b.b	ENSGT01090000260683	ENSGT00940000162183.g	ENSGT00940000156395.e.b	ENSGT00530000063498.A.d	ENSGT00940000155557.jc.b.b
Cyprininae_a	ANCESTRAL SPECIES	85	ENSGT00940000155789.j	ENSGT00390000015332.a	ENSGT00940000156299.`b	ENSGT00940000159676.a.b	ENSGT00940000161734.m.a	ENSGT00940000156972.d.c	ENSGT00940000156994.i.a	ENSGT00730000111116.d	ENSGT00940000156082.a.b.d	ENSGT01100000263555.a.a.a.g	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a.i	ENSGT00940000157057.e.a	ENSGT00390000013639.a	ENSGT00940000154406.g	ENSGT00390000008848.j #22	ENSGT00390000014512.a	ENSGT00390000018879.a	ENSGT00940000155258.g.b.a	ENSGT00940000155258.g.a.b	ENSGT00950000182969.B.c.a.a.a.x	ENSGT00950000182969.B.c.a.a.b.a.b.c	ENSGT00950000182969.B.c.b.a	ENSGT00940000162183.h	ENSGT00940000156395.e.a	ENSGT00530000063498.A.c	ENSGT00940000155557.jc.b.a	ENSGT00940000164531.k	ENSGT00940000159590.m	ENSGT00940000156314.b.d.b	ENSGT00940000160776.n
Golden-line barbel	MODERN SPECIES	24	ENSSGRG00000051689	ect2 (ENSSGRG00000051452)	b3gnt5a (ENSSGRG00000051440)	ENSSGRG00000051439	SLC4A10 (ENSSGRG00000051226)	TBR1 (ENSSGRG00000051220)	psmd14 (ENSSGRG00000051129)	RBMS1 (ENSSGRG00000050837)	ITGB6 (ENSSGRG00000050832)	PLA2R1 (ENSSGRG00000050828)	LY75 (ENSSGRG00000050822)	myom2a (ENSSGRG00000050815)	lgsn (ENSSGRG00000050814)	ptp4a1 (ENSSGRG00000050769)	ENSSGRG00000050768	ENSSGRG00000050767 #22	mrpl4 (ENSSGRG00000050766)	zgc:77929 (ENSSGRG00000050765)	krt93 (ENSSGRG00000050761)	krt94 (ENSSGRG00000050759)	krt98 (ENSSGRG00000050758)	krt15 (ENSSGRG00000050755)	krt99 (ENSSGRG00000050754)	ENSSGRG00000050669	jupa (ENSSGRG00000050666)	WIPF2 (ENSSGRG00000050664)	ENSSGRG00000050662	sp2 (ENSSGRG00000050660)	socs7 (ENSSGRG00000050658)	ENSSGRG00000050647	mrpl45 (ENSSGRG00000050645)
Zebrafish	MODERN SPECIES	2	ect2 (ENSDARG00000007278)	ENSDARG00000079742	b3gnt5a (ENSDARG00000018971)	SLC4A10 (ENSDARG00000063133)	TBR1 (ENSDARG00000076259)	psmd14 (ENSDARG00000063100)	RBMS1 (ENSDARG00000074023)	ITGB6 (ENSDARG00000002494)	PLA2R1 (ENSDARG00000077474)	LY75 (ENSDARG00000053113)	ENSDARG00000115516	myom2a (ENSDARG00000075433)	lgsn (ENSDARG00000007715)	ptp4a1 (ENSDARG00000006242)	col9a1a (ENSDARG00000073699)	ENSDARG00000098623 #22	mrpl4 (ENSDARG00000058824)	C11H6orf120 (ENSDARG00000017337)	ENSDARG00000116002	ENSDARG00000110564	ENSDARG00000112654	ENSDARG00000116521	ENSDARG00000094335	ENSDARG00000088552	ENSDARG00000112873	krt93 (ENSDARG00000044976)	krt94 (ENSDARG00000044975)	krt98 (ENSDARG00000044973)	krt15 (ENSDARG00000036840)	krt99 (ENSDARG00000019365)	ENSDARG00000074508
Euteleosteomorpha	ANCESTRAL SPECIES	18	ENSGT00980000199991	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b
Protacanthopterygii	ANCESTRAL SPECIES	76	ENSGT00980000199991	ENSGT00390000002789	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.b.a.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00990000205417	ENSGT00950000182969.B.c.b.c	ENSGT00950000182969.B.c.a.a.b.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	100	ENSGT00940000157889.g.b.b	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406	ENSGT00940000157935.a.c	ENSGT00390000008848.l #22	ENSGT00390000014512.f.b	ENSGT00940000157935.a.d	ENSGT00390000008848.k #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000154902.sb	ENSGT00940000164531.g	ENSGT00940000159590	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o	ENSGT00940000156395.e.e	ENSGT00940000162183.e.b.a.a	ENSGT00990000205417.b
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	82	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT01030000234599.a.a.ab.b	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406.c	ENSGT00940000157935.a.c	ENSGT00390000008848.k.b #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000159590.o	ENSGT00940000157935.a.d	ENSGT00390000008848.k.a #22	ENSGT00390000014512.f.b	ENSGT00940000154902.sb	ENSGT00940000164531.g	ENSGT00940000159590.p	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o	ENSGT00940000156395.e.e	ENSGT00940000162183.e.b.a.a	ENSGT00990000205417.a.a	ENSGT00950000182969.B.c.b.c.b
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab.a	ENSGT00940000157057.e.h	ENSGT00940000157889.g.b.b	ENSGT00390000013639.d	ENSGT00940000154406.c.a	ENSGT00940000157935.a.d	ENSGT00390000008848.k.a #22	ENSGT00390000014512.f.b	ENSGT00940000164531.g	ENSGT00940000159590.p	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o	ENSGT00940000156395.e.e	ENSGT00940000162183.e.b.a.a	ENSGT00990000205417.a.a	ENSGT00950000182969.B.c.b.c.b.b.b	ENSGT00950000182969.B.c.a.a.b.a.b.m.b.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	51	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab.a	ENSGT00940000157057.e.h	ENSGT00940000157889.g.b.b	ENSGT00390000013639.d	ENSGT00940000154406.c.a	ENSGT00940000157935.a.d	ENSGT00390000008848.k.a #22	ENSGT00390000014512.f.b	ENSGT00940000164531.g	ENSGT00940000159590.p	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o	ENSGT00940000156395.e.e	ENSGT00940000162183.e.b.a.a	ENSGT00990000205417.a.a	ENSGT00950000182969.B.c.b.c.b.b.b.b	ENSGT00950000182969.B.c.b.c.b.b.a
Chinook salmon	MODERN SPECIES	4	capn9 (ENSOTSG00005045125)	taf5l (ENSOTSG00005045114)	nup133 (ENSOTSG00005045080)	ACTA1 (ENSOTSG00005045074)	CCSAP (ENSOTSG00005045073)	RHOU (ENSOTSG00005045072)	dla (ENSOTSG00005045053)	ENSOTSG00005045051	ENSOTSG00005035141	ENSOTSG00005035104	myom2a (ENSOTSG00005033220)	ENSOTSG00005033205	lgsn (ENSOTSG00005033204)	ptp4a1 (ENSOTSG00005033203)	col9a1a (ENSOTSG00005033201)	ENSOTSG00005033200 #22	mrpl4 (ENSOTSG00005033199)	ENSOTSG00005031653	sp2 (ENSOTSG00005031645)	socs7 (ENSOTSG00005031644)	ENSOTSG00005031643	mrpl45 (ENSOTSG00005031642)	npepps (ENSOTSG00005029613)	zgc:77929 (ENSOTSG00005029596)	WIPF2 (ENSOTSG00005029594)	cdc6 (ENSOTSG00005029590)	jupa (ENSOTSG00005026814)	ENSOTSG00005025119	ENSOTSG00005025107	krt99 (ENSOTSG00005025104)	zp3f.2 (ENSOTSG00005025101)
Coho salmon	MODERN SPECIES		ltv1 (ENSOKIG00005000517)	capn9 (ENSOKIG00005000409)	taf5l (ENSOKIG00005000299)	nup133 (ENSOKIG00005000208)	ACTA1 (ENSOKIG00005000036)	CCSAP (ENSOKIG00005000018)	RHOU (ENSOKIG00005016090)	dla (ENSOKIG00005016056)	ENSOKIG00005016047	ENSOKIG00005009582	ENSOKIG00005009346	myom2a (ENSOKIG00005006977)	lgsn (ENSOKIG00005006846)	ptp4a1 (ENSOKIG00005006799)	col9a1a (ENSOKIG00005006782)	ENSOKIG00005006745 #22	mrpl4 (ENSOKIG00005006639)	ENSOKIG00005004976	sp2 (ENSOKIG00005004874)	socs7 (ENSOKIG00005004783)	ENSOKIG00005004769	mrpl45 (ENSOKIG00005004732)	NPEPPS (ENSOKIG00005004571)	zgc:77929 (ENSOKIG00005004506)	ENSOKIG00005004496	cdc6 (ENSOKIG00005004472)	jupa (ENSOKIG00005003401)	ENSOKIG00005003296	ENSOKIG00005003278	ENSOKIG00005003286	krt99 (ENSOKIG00005003262)
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab.a	ENSGT00940000157057.e.h	ENSGT00940000157889.g.b.b	ENSGT00390000013639.d	ENSGT00940000154406.d	ENSGT00940000157935.a.d	ENSGT00390000008848.k.a #22	ENSGT00390000008848.l #22	ENSGT00390000014512.f.b	ENSGT00940000154902.sb	ENSGT00940000164531.g	ENSGT00940000159590.p	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o	ENSGT00940000156395.e.e	ENSGT00940000162183.e.b.b	ENSGT00990000205417.a.a
River trout	MODERN SPECIES	5	ENSSTUG00000013246	ltv1 (ENSSTUG00000013229)	capn9 (ENSSTUG00000012615)	taf5l (ENSSTUG00000012578)	nup133 (ENSSTUG00000011820)	ACTA1 (ENSSTUG00000011784)	CCSAP (ENSSTUG00000011782)	RHOU (ENSSTUG00000011777)	dla (ENSSTUG00000011770)	ENSSTUG00000011765	ENSSTUG00000007759	myom2a (ENSSTUG00000007222)	lgsn (ENSSTUG00000007181)	ptp4a1 (ENSSTUG00000007168)	col9a1a (ENSSTUG00000007144)	ENSSTUG00000007129 #22	ENSSTUG00000007117	ENSSTUG00000005841	sp2 (ENSSTUG00000005798)	socs7 (ENSSTUG00000005694)	ENSSTUG00000005583	mrpl45 (ENSSTUG00000005565)	npepps (ENSSTUG00000004460)	zgc:77929 (ENSSTUG00000004405)	WIPF2 (ENSSTUG00000004401)	cdc6 (ENSSTUG00000004368)	jupa (ENSSTUG00000003502)	ENSSTUG00000003307	ENSSTUG00000003268	krt99 (ENSSTUG00000003219)	krt15 (ENSSTUG00000003098)
Salmoninae_a	ANCESTRAL SPECIES	82	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT01030000234599.a.a.ab.b	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406.c	ENSGT00940000157935.a.c	ENSGT00390000008848.k.b #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000159590.o	ENSGT00940000157935.a.d	ENSGT00390000008848.k.a #22	ENSGT00390000014512.f.b	ENSGT00940000154902.sb	ENSGT00940000164531.g	ENSGT00940000159590.p	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f
Oncorhynchus	ANCESTRAL SPECIES	42	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT01030000234599.a.a.ab.b	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406.c.b	ENSGT00940000157935.a.c	ENSGT00390000008848.k.b #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000159590.o	ENSGT00940000156314.b.a	ENSGT00940000160776.k	ENSGT00390000012679.g	ENSGT00940000155246.r.a	ENSGT00390000018879.c.a	ENSGT00940000155557.jc.b.e	ENSGT00530000063498.A.p	ENSGT00940000156395.e.f	ENSGT00940000162183.f	ENSGT00990000205417.a.b	ENSGT00950000182969.B.c.b.c.a	ENSGT00940000157351.c.a
Oncorhynchus_a	ANCESTRAL SPECIES	38	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT01030000234599.a.a.ab.b	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406.c.b	ENSGT00940000157935.a.c	ENSGT00390000008848.k.b #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000159590.o	ENSGT00940000156314.b.a	ENSGT00940000160776.k	ENSGT00390000012679.g	ENSGT00940000155246.r.a	ENSGT00390000018879.c.a	ENSGT00940000155557.jc.b.e	ENSGT00530000063498.A.p	ENSGT00940000156395.e.f	ENSGT00940000162183.f	ENSGT00990000205417.a.b	ENSGT00950000182969.B.c.b.c.a	ENSGT00390000018868.B.b.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2905	ENSOTSG00005039654	ENSOTSG00005039653	ENSOTSG00005039652	jupa (ENSOTSG00005039649)	zgc:77929 (ENSOTSG00005039648)	WIPF2 (ENSOTSG00005039645)	cdc6 (ENSOTSG00005039643)	npepps (ENSOTSG00005039545)	mrpl45 (ENSOTSG00005039541)	ENSOTSG00005039540	ENSOTSG00005039533	sp2 (ENSOTSG00005039530)	ENSOTSG00005039528	ENSOTSG00005039525	ENSOTSG00005039496	ENSOTSG00005045545 #22	mrpl4 (ENSOTSG00005045544)	ptp4a1 (ENSOTSG00005045536)	ENSOTSG00005045532	ENSOTSG00005045529	lgsn (ENSOTSG00005045527)	dla (ENSOTSG00005045526)	ENSOTSG00005045525	ENSOTSG00005042508	ENSOTSG00005042465	myom2a (ENSOTSG00005041633)	RHOU (ENSOTSG00005041605)	ACTA1 (ENSOTSG00005041599)	ENSOTSG00005041598	ENSOTSG00005041596	ltv1 (ENSOTSG00005041591)
Chinook salmon	MODERN SPECIES	2905	ENSOTSG00005035655	ENSOTSG00005035670	ENSOTSG00005035672	jupa (ENSOTSG00005035675)	zgc:77929 (ENSOTSG00005024520)	WIPF2 (ENSOTSG00005024544)	cdc6 (ENSOTSG00005024546)	npepps (ENSOTSG00005024550)	mrpl45 (ENSOTSG00005024867)	ENSOTSG00005024880	socs7 (ENSOTSG00005024885)	sp2 (ENSOTSG00005024897)	ENSOTSG00005024898	ENSOTSG00005024910	ENSOTSG00005024911	ENSOTSG00005024915 #22	mrpl4 (ENSOTSG00005024918)	ptp4a1 (ENSOTSG00005024925)	ENSOTSG00005024932	ENSOTSG00005024933	lgsn (ENSOTSG00005024934)	dla (ENSOTSG00005024937)	ENSOTSG00005024959	ENSOTSG00005024998	ENSOTSG00005034872	myom2a (ENSOTSG00005034874)	ENSOTSG00005035090	ACTA1 (ENSOTSG00005035093)	ENSOTSG00005035106	ltv1 (ENSOTSG00005035109)	ENSOTSG00005035110
Coho salmon	MODERN SPECIES	12	capn9 (ENSOKIG00005016690)	taf5l (ENSOKIG00005016639)	nup133 (ENSOKIG00005015893)	ACTA1 (ENSOKIG00005015821)	CCSAP (ENSOKIG00005015809)	RHOU (ENSOKIG00005015802)	dla (ENSOKIG00005015721)	ENSOKIG00005015709	ENSOKIG00005010859	ENSOKIG00005010677	myom2a (ENSOKIG00005008197)	ENSOKIG00005008026	lgsn (ENSOKIG00005008016)	ptp4a1 (ENSOKIG00005007984)	ENSOKIG00005007951	ENSOKIG00005007930 #22	mrpl4 (ENSOKIG00005007886)	ENSOKIG00005006774	sp2 (ENSOKIG00005006698)	socs7 (ENSOKIG00005006647)	ENSOKIG00005006538	mrpl45 (ENSOKIG00005006519)	npepps (ENSOKIG00005006067)	C6orf120 (ENSOKIG00005005987)	WIPF2 (ENSOKIG00005005979)	cdc6 (ENSOKIG00005005964)	jupa (ENSOKIG00005033388)	ENSOKIG00005033302	ENSOKIG00005033289	krt15 (ENSOKIG00005033231)	krt98 (ENSOKIG00005033209)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000035511	capn9 (ENSOMYG00000035711)	taf5l (ENSOMYG00000036888)	nup133 (ENSOMYG00000036921)	ENSOMYG00000036974	CCSAP (ENSOMYG00000036990)	ENSOMYG00000037014	ENSOMYG00000037025	ENSOMYG00000037304	ENSOMYG00000040188	myom2a (ENSOMYG00000040595)	ENSOMYG00000073173	lgsn (ENSOMYG00000041171)	ptp4a1 (ENSOMYG00000041184)	col9a1a (ENSOMYG00000041196)	ENSOMYG00000041204 #22	mrpl4 (ENSOMYG00000041213)	ENSOMYG00000041250	sp2 (ENSOMYG00000041284)	socs7 (ENSOMYG00000041290)	ENSOMYG00000041297	mrpl45 (ENSOMYG00000041302)	ENSOMYG00000041313	ENSOMYG00000041331	ENSOMYG00000048526	cdc6 (ENSOMYG00000003321)	jupa (ENSOMYG00000004799)	ENSOMYG00000006403	ENSOMYG00000050954	ENSOMYG00000006462	krt99 (ENSOMYG00000065378)
Salmo	ANCESTRAL SPECIES	89	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT01030000234599.a.a.ab.b	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406.c	ENSGT00940000157935.a.c	ENSGT00390000008848.k.b #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000159590.o	ENSGT00940000156314.b.a	ENSGT00940000160776.k	ENSGT00390000012679.g	ENSGT00940000155246.r.a	ENSGT00390000018879.c.a	ENSGT00940000155557.jc.b.e	ENSGT00530000063498.A.p	ENSGT00940000156395.e.f	ENSGT00940000162183.e.a	ENSGT00950000182969.B.c.b.c.a.b	ENSGT00990000205417.a.b.a	ENSGT00950000182969.B.c.b.c.a.a
River trout	MODERN SPECIES	31	capn9 (ENSSTUG00000050685)	taf5l (ENSSTUG00000050744)	nup133 (ENSSTUG00000050770)	ACTA1 (ENSSTUG00000050809)	CCSAP (ENSSTUG00000050810)	RHOU (ENSSTUG00000050811)	dla (ENSSTUG00000050813)	ENSSTUG00000050819	ENSSTUG00000050824	ENSSTUG00000050862	myom2a (ENSSTUG00000050872)	ENSSTUG00000050938	lgsn (ENSSTUG00000050939)	ptp4a1 (ENSSTUG00000050940)	col9a1a (ENSSTUG00000050943)	ENSSTUG00000050944 #22	mrpl4 (ENSSTUG00000050945)	ENSSTUG00000050952	sp2 (ENSSTUG00000050982)	socs7 (ENSSTUG00000050983)	ENSSTUG00000050984	mrpl45 (ENSSTUG00000050986)	npepps (ENSSTUG00000050988)	zgc:77929 (ENSSTUG00000050991)	ENSSTUG00000018424	cdc6 (ENSSTUG00000018434)	jupa (ENSSTUG00000018486)	ENSSTUG00000019050	ENSSTUG00000019306	krt99 (ENSSTUG00000019332)	ENSSTUG00000019442
Atlantic salmon	MODERN SPECIES	11	capn9 (ENSSSAG00000112435)	taf5l (ENSSSAG00000083268)	nup133 (ENSSSAG00000062572)	ACTA1 (ENSSSAG00000062181)	ENSSSAG00000091165	RHOU (ENSSSAG00000062117)	dla (ENSSSAG00000062006)	ENSSSAG00000061984	ENSSSAG00000060153	ENSSSAG00000098659	myom2a (ENSSSAG00000103289)	ENSSSAG00000084744	lgsn (ENSSSAG00000057433)	TP4A1 (ENSSSAG00000090305)	col9a1a (ENSSSAG00000086280)	ENSSSAG00000097975 #22	ENSSSAG00000114921	mrpl4 (ENSSSAG00000015794)	ENSSSAG00000057074	sp2 (ENSSSAG00000057013)	socs7 (ENSSSAG00000057003)	ENSSSAG00000056993	mrpl45 (ENSSSAG00000056972)	ENSSSAG00000056633	ENSSSAG00000090952	ENSSSAG00000117049	plak (ENSSSAG00000053205)	ENSSSAG00000053090	krt99 (ENSSSAG00000053104)	ENSSSAG00000053076	ENSSSAG00000092618
Huchen	MODERN SPECIES	237	nup133 (ENSHHUG00000039439)	ACTA1 (ENSHHUG00000038970)	CCSAP (ENSHHUG00000038963)	RHOU (ENSHHUG00000038957)	dla (ENSHHUG00000038935)	ENSHHUG00000038924	ENSHHUG00000037465	ENSHHUG00000037427	ENSHHUG00000037423	myom2a (ENSHHUG00000037276)	ENSHHUG00000037270	lgsn (ENSHHUG00000037257)	ptp4a1 (ENSHHUG00000037221)	ENSHHUG00000037212	ENSHHUG00000037176	ENSHHUG00000037168 #22	mrpl4 (ENSHHUG00000037125)	ENSHHUG00000037092	ENSHHUG00000036899	sp2 (ENSHHUG00000036889)	socs7 (ENSHHUG00000036867)	ENSHHUG00000036838	mrpl45 (ENSHHUG00000036830)	npepps (ENSHHUG00000036649)	zgc:77929 (ENSHHUG00000036643)	WIPF2 (ENSHHUG00000036640)	cdc6 (ENSHHUG00000036634)	jupa (ENSHHUG00000036613)	ENSHHUG00000036571	krt99 (ENSHHUG00000036567)	ENSHHUG00000036564
Salmoninae	ANCESTRAL SPECIES	100	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab	ENSGT00940000157057.e.h	ENSGT00940000157889.g.b.b	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f	ENSGT00940000160859.a	ENSGT00950000182787.A.a.d.a	ENSGT00940000157057.e.g	ENSGT00940000157889.g.b.a	ENSGT00390000013639.c	ENSGT00940000154406	ENSGT00940000157935.a.c	ENSGT00390000008848.l #22	ENSGT00390000014512.f.b	ENSGT00940000157935.a.d	ENSGT00390000008848.k #22	ENSGT00390000014512.f.a	ENSGT00940000164531.h	ENSGT00940000154902.sb	ENSGT00940000164531.g	ENSGT00940000159590	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000008848.l #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000008848.l #22
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000051508	ENSOMYG00000008034	ltv1 (ENSOMYG00000008075)	capn9 (ENSOMYG00000008726)	taf5l (ENSOMYG00000009508)	nup133 (ENSOMYG00000010021)	ACTA1 (ENSOMYG00000030567)	CCSAP (ENSOMYG00000010980)	RHOU (ENSOMYG00000010995)	dla (ENSOMYG00000011005)	ENSOMYG00000011021	ENSOMYG00000011175	myom2a (ENSOMYG00000012269)	ptp4a1 (ENSOMYG00000015817)	col9a1a (ENSOMYG00000015824)	ENSOMYG00000015867 #22	ENSOMYG00000069225	mrpl4 (ENSOMYG00000015911)	ENSOMYG00000016019	sp2 (ENSOMYG00000017220)	ENSOMYG00000017585	socs7 (ENSOMYG00000017240)	ENSOMYG00000017375	mrpl45 (ENSOMYG00000017431)	ENSOMYG00000017792	ENSOMYG00000017801	cdc6 (ENSOMYG00000017817)	jupa (ENSOMYG00000017857)	ENSOMYG00000018119	ENSOMYG00000063477	krt99 (ENSOMYG00000047949)
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab.a	ENSGT00940000157057.e.h	ENSGT00940000157889.g.b.b	ENSGT00390000013639.d	ENSGT00940000154406.d	ENSGT00940000157935.a.d	ENSGT00390000008848.k.a #22	ENSGT00390000008848.l #22	ENSGT00390000014512.f.b	ENSGT00940000154902.sb	ENSGT00940000164531.g	ENSGT00940000159590.p	ENSGT00940000156314.b.b	ENSGT00940000160776.l	ENSGT00390000012679.h	ENSGT00940000155246.r.b	ENSGT00390000018879.c.b	ENSGT00940000155557.jc.b.f	ENSGT00530000063498.A.o	ENSGT00940000156395.e.e	ENSGT00940000162183.e.b.b	ENSGT00990000205417.a.a	ENSGT00950000182969.B.c.b.c.b
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000089284	nup133 (ENSSSAG00000006278)	ACTA1 (ENSSSAG00000007690)	CCSAP (ENSSSAG00000007704)	RHOU (ENSSSAG00000007710)	dla (ENSSSAG00000007717)	ENSSSAG00000083618	myom2a (ENSSSAG00000119139)	ENSSSAG00000007744	ENSSSAG00000094621	ENSSSAG00000120680	ENSSSAG00000103185	lgsn (ENSSSAG00000015736)	tp4a1 (ENSSSAG00000015747)	col9a1a (ENSSSAG00000015756)	ENSSSAG00000101448 #22	RM04 (ENSSSAG00000057361)	ENSSSAG00000093318	ENSSSAG00000081786	ENSSSAG00000016022	sp2 (ENSSSAG00000040293)	socs7 (ENSSSAG00000040368)	ENSSSAG00000092308	mrpl45 (ENSSSAG00000040904)	ENSSSAG00000040996	ENSSSAG00000041744	ENSSSAG00000041756	cdc6 (ENSSSAG00000041769)	PLAK (ENSSSAG00000041828)	ENSSSAG00000044165	ENSSSAG00000053114
Huchen	MODERN SPECIES	711	ltv1 (ENSHHUG00000052380)	capn9 (ENSHHUG00000052385)	taf5l (ENSHHUG00000052519)	nup133 (ENSHHUG00000052521)	ACTA1 (ENSHHUG00000052533)	CCSAP (ENSHHUG00000052628)	RHOU (ENSHHUG00000052629)	dla (ENSHHUG00000052630)	ENSHHUG00000052646	ENSHHUG00000052653	myom2a (ENSHHUG00000052814)	ENSHHUG00000052816	lgsn (ENSHHUG00000052817)	ptp4a1 (ENSHHUG00000052818)	ENSHHUG00000052819	ENSHHUG00000052820 #22	mrpl4 (ENSHHUG00000052821)	ENSHHUG00000052822	ENSHHUG00000052823	sp2 (ENSHHUG00000052824)	socs7 (ENSHHUG00000052825)	ENSHHUG00000052828	mrpl45 (ENSHHUG00000052829)	npepps (ENSHHUG00000052830)	zgc:77929 (ENSHHUG00000052858)	WIPF2 (ENSHHUG00000052860)	cdc6 (ENSHHUG00000052861)	jupa (ENSHHUG00000052865)
Northern pike	MODERN SPECIES	8	capn9 (ENSELUG00000011036)	taf5l (ENSELUG00000011004)	nup133 (ENSELUG00000010985)	ACTA1 (ENSELUG00000001139)	CCSAP (ENSELUG00000010931)	RHOU (ENSELUG00000001495)	dla (ENSELUG00000010895)	ENSELUG00000010847	hk1 (ENSELUG00000010829)	ENSELUG00000010795	myom2a (ENSELUG00000010735)	ENSELUG00000010582	lgsn (ENSELUG00000010565)	ptp4a1 (ENSELUG00000010545)	col9a1a (ENSELUG00000010517)	ENSELUG00000010495 #22	mrpl4 (ENSELUG00000010463)	ENSELUG00000010360	sp2 (ENSELUG00000010222)	socs7 (ENSELUG00000001426)	ENSELUG00000010130	mrpl45 (ENSELUG00000010109)	npepps (ENSELUG00000010076)	zgc:77929 (ENSELUG00000009979)	WIPF2 (ENSELUG00000009966)	cdc6 (ENSELUG00000009948)	jupa (ENSELUG00000009933)	ENSELUG00000009890	ENSELUG00000001571	krt99 (ENSELUG00000009711)	krt15 (ENSELUG00000009657)
Acanthomorphata	ANCESTRAL SPECIES	78	ENSGT00390000002789	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00940000155557.jc.b	ENSGT00530000063498.A
Euacanthomorphacea	ANCESTRAL SPECIES	37	ENSGT00940000177040	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00940000155557.jc.b	ENSGT00530000063498.A
Percomorphaceae	ANCESTRAL SPECIES	37	ENSGT00940000177040	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155557.jc.b	ENSGT00530000063498.A
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Zig-zag eel	MODERN SPECIES		ENSMAMG00000002242	ENSMAMG00000002332	ENSMAMG00000024926	ENSMAMG00000002198	ENSMAMG00000026924	ENSMAMG00000028223	ENSMAMG00000002157	ENSMAMG00000002124	ENSMAMG00000002095	ENSMAMG00000002050	myom2a (ENSMAMG00000002012)	ENSMAMG00000026699	lgsn (ENSMAMG00000001937)	ptp4a1 (ENSMAMG00000001896)	ENSMAMG00000028525	ENSMAMG00000001789 #22	mrpl4 (ENSMAMG00000001736)	ENSMAMG00000001635	sp2 (ENSMAMG00000001599)	socs7 (ENSMAMG00000001564)	ENSMAMG00000001264	mrpl45 (ENSMAMG00000001198)	ENSMAMG00000001101	ENSMAMG00000001090	ENSMAMG00000001083	ENSMAMG00000001060	ENSMAMG00000026036	ENSMAMG00000000944	ENSMAMG00000026893	ENSMAMG00000000898	nup133 (ENSMAMG00000025208)
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00730000111912.A.b
Climbing perch	MODERN SPECIES		hoga1 (ENSATEG00000022037)	ENSATEG00000022028	ENSATEG00000022021	slit1b (ENSATEG00000021971)	ENSATEG00000021938	ENSATEG00000021914	ENSATEG00000021898	ENSATEG00000021885	ENSATEG00000021862	ENSATEG00000021839	myom2a (ENSATEG00000021776)	ENSATEG00000021763	lgsn (ENSATEG00000021753)	ptp4a1 (ENSATEG00000021743)	ENSATEG00000028274	ENSATEG00000021704 #22	mrpl4 (ENSATEG00000030025)	ENSATEG00000021470	sp2 (ENSATEG00000021438)	socs7 (ENSATEG00000021418)	ENSATEG00000021381	mrpl45 (ENSATEG00000021376)	ENSATEG00000021341	ENSATEG00000021334	ENSATEG00000021329	ENSATEG00000021316	ENSATEG00000021308	CCSAP (ENSATEG00000021301)	ENSATEG00000025751	NUP133 (ENSATEG00000021277)	ENSATEG00000027343
Siamese fighting fish	MODERN SPECIES		CNNM1 (ENSBSLG00000006707)	hoga1 (ENSBSLG00000006434)	MORN4 (ENSBSLG00000006339)	ENSBSLG00000006317	slit1b (ENSBSLG00000005052)	ENSBSLG00000004956	ENSBSLG00000007551	dla (ENSBSLG00000007537)	ENSBSLG00000007532	hk1 (ENSBSLG00000006755)	myom2a (ENSBSLG00000005201)	ENSBSLG00000005104	lgsn (ENSBSLG00000005047)	ptp4a1 (ENSBSLG00000004953)	ENSBSLG00000004910	ENSBSLG00000004846 #22	mrpl4 (ENSBSLG00000004763)	ENSBSLG00000004264	sp2 (ENSBSLG00000004249)	socs7 (ENSBSLG00000004241)	ENSBSLG00000004205	mrpl45 (ENSBSLG00000004192)	npepps (ENSBSLG00000003886)	zgc:77929 (ENSBSLG00000003109)	mrpl21 (ENSBSLG00000003105)	WIPF2 (ENSBSLG00000003102)	ADAP1 (ENSBSLG00000003045)	ENSBSLG00000003036	ENSBSLG00000003035	GTPBP1 (ENSBSLG00000003011)	ELFN2 (ENSBSLG00000003008)
Carangaria	ANCESTRAL SPECIES		ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Carangaria_A	ANCESTRAL SPECIES	42																ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Seriola	ANCESTRAL SPECIES	112																ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Greater amberjack	MODERN SPECIES	230														ENSSDUG00000002236	ENSSDUG00000002179	ENSSDUG00000002115 #22	mrpl4 (ENSSDUG00000002078)	ENSSDUG00000002003	ENSSDUG00000001951	sp2 (ENSSDUG00000001919)	socs7 (ENSSDUG00000001759)	ENSSDUG00000001710	mrpl45 (ENSSDUG00000001672)	npepps (ENSSDUG00000001565)	zgc:77929 (ENSSDUG00000001546)	ENSSDUG00000001524	WIPF2 (ENSSDUG00000001468)	ENSSDUG00000001460	ENSSDUG00000001457	ENSSDUG00000001443	ENSSDUG00000001421
Yellowtail amberjack	MODERN SPECIES	2880															ENSSLDG00000015164	ENSSLDG00000015124 #22	mrpl4 (ENSSLDG00000015083)	ENSSLDG00000015070	ENSSLDG00000014965	sp2 (ENSSLDG00000014913)	socs7 (ENSSLDG00000014824)	ENSSLDG00000014779	mrpl45 (ENSSLDG00000014753)	npepps (ENSSLDG00000014713)	zgc:77929 (ENSSLDG00000014699)	ENSSLDG00000014690	WIPF2 (ENSSLDG00000014674)	ENSSLDG00000014663	ENSSLDG00000014640	cdc6 (ENSSLDG00000014558)	ENSSLDG00000014517
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	167	hoga1 (ENSLCAG00010017823)	MORN4 (ENSLCAG00010017826)	ENSLCAG00010017832	slit1b (ENSLCAG00010017878)	ARHGAP19 (ENSLCAG00010017975)	ENSLCAG00010017979	ENSLCAG00010017981	dla (ENSLCAG00010017982)	ENSLCAG00010017985	hk1 (ENSLCAG00010018183)	myom2a (ENSLCAG00010019470)	ENSLCAG00010019958	lgsn (ENSLCAG00010019964)	ptp4a1 (ENSLCAG00010019972)	col9a1a (ENSLCAG00010020000)	ENSLCAG00010020017 #22
Barramundi perch	MODERN SPECIES	1183																ENSLCAG00010005312 #22
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Tongue sole	MODERN SPECIES	19					slit1b (ENSCSEG00000020505)	ARHGAP19 (ENSCSEG00000020513)	RHOU (ENSCSEG00000020517)	dla (ENSCSEG00000020522)	ENSCSEG00000020532	hk1 (ENSCSEG00000020535)	myom2a (ENSCSEG00000020547)	ENSCSEG00000020558	lgsn (ENSCSEG00000020560)	ptp4a1 (ENSCSEG00000020563)	ENSCSEG00000020570	ENSCSEG00000020572 #22	ENSCSEG00000020578	mrpl4 (ENSCSEG00000020580)	ENSCSEG00000020582	ENSCSEG00000020585	sp2 (ENSCSEG00000020591)	sp2 (ENSCSEG00000020595)	socs7 (ENSCSEG00000020704)	ENSCSEG00000020706	mrpl45 (ENSCSEG00000020713)	npepps (ENSCSEG00000020714)	zgc:77929 (ENSCSEG00000020719)	MRPL21 (ENSCSEG00000020721)	WIPF2 (ENSCSEG00000020722)	ENSCSEG00000020726	pus10 (ENSCSEG00000020728)
Turbot	MODERN SPECIES	20	CNNM1 (ENSSMAG00000021103)	hoga1 (ENSSMAG00000035315)	ENSSMAG00000032297	ENSSMAG00000035022	ENSSMAG00000021106	slit1b (ENSSMAG00000021107)	ENSSMAG00000021108	ENSSMAG00000030106	ENSSMAG00000021110	ENSSMAG00000021111	ENSSMAG00000021112	myom2a (ENSSMAG00000021113)	ENSSMAG00000021114	lgsn (ENSSMAG00000021115)	ptp4a1 (ENSSMAG00000021116)	ENSSMAG00000021117 #22	mrpl4 (ENSSMAG00000021118)	ENSSMAG00000021121	sp2 (ENSSMAG00000021122)	socs7 (ENSSMAG00000021123)	ENSSMAG00000020853	mrpl45 (ENSSMAG00000020857)	ENSSMAG00000020855	ENSSMAG00000020858	ENSSMAG00000020859	ENSSMAG00000020863	ENSSMAG00000028011	ENSSMAG00000020865	ENSSMAG00000020868	CCSAP (ENSSMAG00000025914)	ENSSMAG00000020871
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00730000111173.h	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590.t	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Fugu	MODERN SPECIES	8	ENSTRUG00000025741	ENSTRUG00000000765	SPRED2 (ENSTRUG00000000716)	RAB1A (ENSTRUG00000029783)	ENSTRUG00000000596	dla (ENSTRUG00000010455)	ENSTRUG00000010240	hk1 (ENSTRUG00000009458)	myom2a (ENSTRUG00000008910)	ENSTRUG00000022496	ENSTRUG00000029475	lgsn (ENSTRUG00000008845)	ptp4a1 (ENSTRUG00000032305)	ENSTRUG00000008551	ENSTRUG00000027830	ENSTRUG00000020874 #22	mrpl4 (ENSTRUG00000008532)	ENSTRUG00000007839	sp2 (ENSTRUG00000007642)	socs7 (ENSTRUG00000020501)	ENSTRUG00000026571	mrpl45 (ENSTRUG00000007499)	ENSTRUG00000026041	ENSTRUG00000006896	ENSTRUG00000026298	ENSTRUG00000028743	npepps (ENSTRUG00000006339)	zgc:77929 (ENSTRUG00000006304)	ENSTRUG00000006299	WIPF2 (ENSTRUG00000006189)	cdc6 (ENSTRUG00000030863)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	10					slit1b (ENSTNIG00000003631)	ARHGAP19 (ENSTNIG00000003630)	ENSTNIG00000000639	dla (ENSTNIG00000003274)	ENSTNIG00000003273	hk1 (ENSTNIG00000003272)	myom2a (ENSTNIG00000003271)	ENSTNIG00000003270	lgsn (ENSTNIG00000003269)	ptp4a1 (ENSTNIG00000003268)	col9a1a (ENSTNIG00000003267)	ENSTNIG00000003266 #22	mrpl4 (ENSTNIG00000003265)	ENSTNIG00000001723	ENSTNIG00000006289	ENSTNIG00000000050	sp2 (ENSTNIG00000006290)	socs7 (ENSTNIG00000006291)	ENSTNIG00000006292	mrpl45 (ENSTNIG00000006293)	ENSTNIG00000000174	npepps (ENSTNIG00000006294)	ENSTNIG00000006295	WIPF2 (ENSTNIG00000006296)	cdc6 (ENSTNIG00000006297)	ENSTNIG00000006298	ACTA1 (ENSTNIG00000017237)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001270	ENSTNIG00000002031	ENSTNIG00000002030	ENSTNIG00000001531	ENSTNIG00000002028	wdyhv1 (ENSTNIG00000002025)	ENSTNIG00000002022	ENSTNIG00000002018	ENSTNIG00000002017	gna13a (ENSTNIG00000002016)	TFAP4 (ENSTNIG00000002015)	klhl36 (ENSTNIG00000002014)	ENSTNIG00000001371	GID4 (ENSTNIG00000002013)	ENSTNIG00000002012	ENSTNIG00000002011 #22	ENSTNIG00000002010	psmc6 (ENSTNIG00000002009)	atg14 (ENSTNIG00000002008)	C11orf98 (ENSTNIG00000002007)	UPP1 (ENSTNIG00000001379)	ENSTNIG00000000902	ACTN1 (ENSTNIG00000002006)	ENSTNIG00000002003	ENSTNIG00000001328	ENSTNIG00000002001	ATP6V1B1 (ENSTNIG00000002000)	ENSTNIG00000001999	ENSTNIG00000001998	ndrg2 (ENSTNIG00000001995)	ENSTNIG00000001993
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00730000111173.h	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Ballan wrasse	MODERN SPECIES	133				ENSLBEG00000028529	slit1b (ENSLBEG00000028531)	ARHGAP19 (ENSLBEG00000000329)	RHOU (ENSLBEG00000000359)	dla (ENSLBEG00000000377)	ENSLBEG00000000447	hk1 (ENSLBEG00000000465)	myom2a (ENSLBEG00000000581)	ENSLBEG00000000635	lgsn (ENSLBEG00000000662)	ptp4a1 (ENSLBEG00000000700)	ENSLBEG00000000752	ENSLBEG00000000770 #22	mrpl4 (ENSLBEG00000000848)	ENSLBEG00000000990	ENSLBEG00000001027	sp2 (ENSLBEG00000001053)	socs7 (ENSLBEG00000001103)	ENSLBEG00000001130	mrpl45 (ENSLBEG00000001166)	npepps (ENSLBEG00000001199)	zgc:77929 (ENSLBEG00000001283)	MRPL21 (ENSLBEG00000001294)	WIPF2 (ENSLBEG00000001322)	cdc6 (ENSLBEG00000001364)	CCSAP (ENSLBEG00000001450)	ACTA1 (ENSLBEG00000001468)	nup133 (ENSLBEG00000001504)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT00980000198884	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Perciformes_a	ANCESTRAL SPECIES		ENSGT00530000063604.A	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Pike perch	MODERN SPECIES	151	ENSSLUG00000018035	slit1b (ENSSLUG00000017676)	ARHGAP19 (ENSSLUG00000017387)	ENSSLUG00000017371	ENSSLUG00000017362	ENSSLUG00000017356	ENSSLUG00000017349	dla (ENSSLUG00000017336)	ENSSLUG00000017331	hk1 (ENSSLUG00000017014)	myom2a (ENSSLUG00000014845)	ENSSLUG00000014694	lgsn (ENSSLUG00000014684)	ptp4a1 (ENSSLUG00000014677)	ENSSLUG00000014673	ENSSLUG00000014668 #22	mrpl4 (ENSSLUG00000014661)	ENSSLUG00000013658	sp2 (ENSSLUG00000013610)	socs7 (ENSSLUG00000013603)	ENSSLUG00000013573	mrpl45 (ENSSLUG00000013559)	npepps (ENSSLUG00000013506)	zgc:77929 (ENSSLUG00000013486)	mrpl21 (ENSSLUG00000013483)	WIPF2 (ENSSLUG00000013475)	ENSSLUG00000013471	cdc6 (ENSSLUG00000013456)	ACTA1 (ENSSLUG00000013377)	nup133 (ENSSLUG00000013119)
Channel bull blenny	MODERN SPECIES	275	ENSCGOG00000022289	ENSCGOG00000022283	ENSCGOG00000022281	ENSCGOG00000022280	ENSCGOG00000022278	ENSCGOG00000022276	ENSCGOG00000022272	dla (ENSCGOG00000022270)	ENSCGOG00000022267	hk1 (ENSCGOG00000018845)	myom2a (ENSCGOG00000018657)	ENSCGOG00000018644	lgsn (ENSCGOG00000018643)	ptp4a1 (ENSCGOG00000018609)	ENSCGOG00000018606	ENSCGOG00000018604 #22	mrpl4 (ENSCGOG00000018602)	ENSCGOG00000018599	ENSCGOG00000018549	socs7 (ENSCGOG00000018539)	ENSCGOG00000018535	ENSCGOG00000018533	mrpl45 (ENSCGOG00000018530)	npepps (ENSCGOG00000018195)	zgc:77929 (ENSCGOG00000018183)	mrpl21 (ENSCGOG00000018180)	WIPF2 (ENSCGOG00000018179)	ENSCGOG00000018178	ENSCGOG00000018177	ENSCGOG00000017859	cdc6 (ENSCGOG00000017834)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT01050000244843.c.a.a.b.a	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a
Gilthead seabream	MODERN SPECIES		ENSSAUG00010013436	ENSSAUG00010013435	ENSSAUG00010013433	ENSSAUG00010013428	ENSSAUG00010013426	ENSSAUG00010013424	ENSSAUG00010013412	dla (ENSSAUG00010013409)	ENSSAUG00010013406	hk1 (ENSSAUG00010006880)	myom2a (ENSSAUG00010002573)	ENSSAUG00010002524	lgsn (ENSSAUG00010002519)	ptp4a1 (ENSSAUG00010002515)	col9a1a (ENSSAUG00010002506)	ENSSAUG00010002500 #22	mrpl4 (ENSSAUG00010002492)	ENSSAUG00010002371	sp2 (ENSSAUG00010002349)	socs7 (ENSSAUG00010002314)	ENSSAUG00010002306	ENSSAUG00010002174	mrpl45 (ENSSAUG00010002162)	npepps (ENSSAUG00010002068)	zgc:77929 (ENSSAUG00010002051)	mrpl21 (ENSSAUG00010002046)	WIPF2 (ENSSAUG00010002042)	ENSSAUG00010002039	ENSSAUG00010002032	ENSSAUG00010002027	cdc6 (ENSSAUG00010002017)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT01050000244843.c.a.a.b.a	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005023347	slit1b (ENSLCRG00005002787)	ARHGAP19 (ENSLCRG00005010166)	ENSLCRG00005010172	RHOU (ENSLCRG00005010174)	dla (ENSLCRG00005010176)	ENSLCRG00005010180	myom2a (ENSLCRG00005010193)	hk1 (ENSLCRG00005010263)	ENSLCRG00005014303	ENSLCRG00005014304	lgsn (ENSLCRG00005014305)	ENSLCRG00005014306	ptp4a1 (ENSLCRG00005014307)	col9a1a (ENSLCRG00005014308)	ENSLCRG00005014309 #22	mrpl4 (ENSLCRG00005014310)	ENSLCRG00005014312	ENSLCRG00005014314	sp2 (ENSLCRG00005014359)	socs7 (ENSLCRG00005014360)	ENSLCRG00005014369	mrpl45 (ENSLCRG00005014370)	npepps (ENSLCRG00005014373)	zgc:77929 (ENSLCRG00005014463)	mrpl21 (ENSLCRG00005014464)	WIPF2 (ENSLCRG00005014465)	zfp36l1b (ENSLCRG00005014466)	ptger2b (ENSLCRG00005014467)	psmc6 (ENSLCRG00005014472)	cgrrf1 (ENSLCRG00005014492)
European seabass	MODERN SPECIES	20	ENSDLAG00005031665	ENSDLAG00005032028	slit1b (ENSDLAG00005001600)	ENSDLAG00005001355	ENSDLAG00005017832	ENSDLAG00005020174	ENSDLAG00005017662	ENSDLAG00005022238	ENSDLAG00005022146	ENSDLAG00005022130	myom2a (ENSDLAG00005020729)	ENSDLAG00005020677	lgsn (ENSDLAG00005020670)	ptp4a1 (ENSDLAG00005020648)	col9a1a (ENSDLAG00005020625)	ENSDLAG00005020609 #22	ENSDLAG00005029040	mrpl4 (ENSDLAG00005020598)	ENSDLAG00005020090	sp2 (ENSDLAG00005020071)	socs7 (ENSDLAG00005020035)	ENSDLAG00005031581	ENSDLAG00005019562	ENSDLAG00005019545	ENSDLAG00005032328	ENSDLAG00005030087	ENSDLAG00005019531	ENSDLAG00005027908	ENSDLAG00005032061	ENSDLAG00005031947	ENSDLAG00005019514
Ovalentaria	ANCESTRAL SPECIES		ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Atherinomorphae	ANCESTRAL SPECIES	46	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Oryzias	ANCESTRAL SPECIES	34	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Oryzias_a	ANCESTRAL SPECIES	59	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000154847.m	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b.g	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Chinese medaka	MODERN SPECIES	468									ARHGAP19 (ENSOSIG00000016016)	ENSOSIG00000016019	dla (ENSOSIG00000016023)	ENSOSIG00000016024	hk1 (ENSOSIG00000016036)	ENSOSIG00000016205	col9a1a (ENSOSIG00000016207)	ENSOSIG00000016210 #22	mrpl4 (ENSOSIG00000016211)	sp2 (ENSOSIG00000016216)	ENSOSIG00000016217	ENSOSIG00000016229	ENSOSIG00000016232	npepps (ENSOSIG00000016234)	zgc:77929 (ENSOSIG00000016251)	MRPL21 (ENSOSIG00000016256)	ENSOSIG00000016262
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000000043	ENSORLG00000000044	ENSORLG00000027792	ENSORLG00000027690	ENSORLG00000000055	ARHGAP19 (ENSORLG00000000062)	ENSORLG00000000064	dla (ENSORLG00000027625)	ENSORLG00000026423	HK1 (ENSORLG00000000069)	myom2a (ENSORLG00000000075)	ENSORLG00000000078	lgsn (ENSORLG00000000080)	ptp4a1 (ENSORLG00000000081)	col9a1a (ENSORLG00000028143)	ENSORLG00000000083 #22	mrpl4 (ENSORLG00000000085)	ENSORLG00000000089	ENSORLG00000000094	sp2 (ENSORLG00000000102)	ENSORLG00000027954	ENSORLG00000030230	ENSORLG00000025721	mrpl45 (ENSORLG00000000106)	npepps (ENSORLG00000000111)	zgc:77929 (ENSORLG00000000119)	MRPL21 (ENSORLG00000000120)	ENSORLG00000000122	ENSORLG00000030145	ENSORLG00000030263	ENSORLG00000025152
Oryzias_b	ANCESTRAL SPECIES	36	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT01030000237709	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b
Indian medaka	MODERN SPECIES	21	MORN4 (ENSOMEG00000011473)	ENSOMEG00000011452	ENSOMEG00000011408	ARHGAP19 (ENSOMEG00000011381)	ENSOMEG00000011304	dla (ENSOMEG00000011280)	ENSOMEG00000011246	hk1 (ENSOMEG00000011203)	myom2a (ENSOMEG00000000267)	ENSOMEG00000010956	lgsn (ENSOMEG00000010937)	ptp4a1 (ENSOMEG00000010915)	ENSOMEG00000010888	ENSOMEG00000010877	ENSOMEG00000010866	ENSOMEG00000010846 #22	mrpl4 (ENSOMEG00000010800)	paqr7b (ENSOMEG00000010782)	ENSOMEG00000010776	ENSOMEG00000010757	ENSOMEG00000010739	ENSOMEG00000010726	ENSOMEG00000010710	ENSOMEG00000010696	ENSOMEG00000010684	ENSOMEG00000010668	ENSOMEG00000010650	ENSOMEG00000010639	prpsap1 (ENSOMEG00000010573)	ENSOMEG00000010545	ENSOMEG00000010531
Javanese ricefish	MODERN SPECIES		ENSOJAG00000001402	hk1 (ENSOJAG00000000858)	ENSOJAG00000000571	lgsn (ENSOJAG00000000560)	ptp4a1 (ENSOJAG00000000548)	ENSOJAG00000000536	EOLA1 (ENSOJAG00000000510)	opn6a (ENSOJAG00000000503)	ENSOJAG00000000489	eif4a3 (ENSOJAG00000000464)	soul4 (ENSOJAG00000000453)	tmem178a (ENSOJAG00000000441)	ENSOJAG00000000324	ENSOJAG00000000316	SLC29A1 (ENSOJAG00000000290)	ENSOJAG00000000250 #22	mrpl4 (ENSOJAG00000000204)	ENSOJAG00000000195	ENSOJAG00000000116	sp2 (ENSOJAG00000018969)	socs7 (ENSOJAG00000018901)	ENSOJAG00000018767	mrpl45 (ENSOJAG00000018748)	MRPL21 (ENSOJAG00000018424)	ENSOJAG00000018403	cdc6 (ENSOJAG00000018306)	CCSAP (ENSOJAG00000018296)	ENSOJAG00000018276	ENSOJAG00000018258	nup133 (ENSOJAG00000017093)	taf5l (ENSOJAG00000017027)
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966
Aplocheiloidei	ANCESTRAL SPECIES	81	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000180052	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b
Mangrove rivulus	MODERN SPECIES	168						ENSKMAG00000012355	ARHGAP19 (ENSKMAG00000012374)	ENSKMAG00000012396	dla (ENSKMAG00000012416)	ENSKMAG00000012472	hk1 (ENSKMAG00000012525)	myom2a (ENSKMAG00000012595)	ENSKMAG00000012648	lgsn (ENSKMAG00000012662)	ptp4a1 (ENSKMAG00000012677)	ENSKMAG00000012724 #22	mrpl4 (ENSKMAG00000012769)	ENSKMAG00000012788	ENSKMAG00000012832	sp2 (ENSKMAG00000012908)	socs7 (ENSKMAG00000012966)	ENSKMAG00000013011	tefm (ENSKMAG00000013028)	ENSKMAG00000013053	RHOT1 (ENSKMAG00000013102)	rhbdl3 (ENSKMAG00000013213)	znf207b (ENSKMAG00000013273)	ENSKMAG00000013314	ENSKMAG00000013346	ENSKMAG00000013418	SEPTIN9 (ENSKMAG00000013474)
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015009984	slit1b (ENSNFUG00015010091)	ENSNFUG00015010906	ENSNFUG00015010916	ENSNFUG00015010919	ENSNFUG00015010928	hoga1 (ENSNFUG00015010952)	CNNM1 (ENSNFUG00015011166)	GOT1 (ENSNFUG00015011190)	NKX2-3 (ENSNFUG00015011235)	SLC25A28 (ENSNFUG00015011246)	ENSNFUG00015011257	ENTPD7 (ENSNFUG00015011274)	CREBRF (ENSNFUG00015011320)	atpv0e2 (ENSNFUG00015011330)	HYLS1 (ENSNFUG00015011348) #22	ccdc3b (ENSNFUG00015011363)	ZGMRPL4 (ENSNFUG00015011372)	ENSNFUG00015011456	mrpl21 (ENSNFUG00015011963)	C11H6ORF120 (ENSNFUG00015011970)	npepps (ENSNFUG00015012030)	MRPL45 (ENSNFUG00015012866)	ENSNFUG00015012876	socs7 (ENSNFUG00015012904)	ENSNFUG00015012916	sp2 (ENSNFUG00015012924)	tomm20b (ENSNFUG00015012928)	RBM34 (ENSNFUG00015012947)	tbce (ENSNFUG00015012964)	glrba (ENSNFUG00015013001)
Cyprinodontoidei	ANCESTRAL SPECIES	41	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966
Poecilia	ANCESTRAL SPECIES	6	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966
NAME_6	ANCESTRAL SPECIES	78									ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000154902	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00390000011529	ENSGT00940000153342.b
Amazon molly	MODERN SPECIES	608									ZBTB45 (ENSPFOG00000014275)	hk1 (ENSPFOG00000014096)	myom2a (ENSPFOG00000013639)	ENSPFOG00000024637	lgsn (ENSPFOG00000013604)	ptp4a1 (ENSPFOG00000013584)	col9a1a (ENSPFOG00000013368)	ENSPFOG00000013332 #22	mrpl4 (ENSPFOG00000013329)	ENSPFOG00000024740	ENSPFOG00000013118	sp2 (ENSPFOG00000013068)	socs7 (ENSPFOG00000013037)	ENSPFOG00000012987	mrpl45 (ENSPFOG00000012935)	npepps (ENSPFOG00000012738)	zgc:77929 (ENSPFOG00000020121)	mrpl21 (ENSPFOG00000020119)	WIPF2 (ENSPFOG00000024468)	cdc6 (ENSPFOG00000012621)	ENSPFOG00000012606	nup133 (ENSPFOG00000012316)	taf5l (ENSPFOG00000012282)
Sailfin molly	MODERN SPECIES	952																ENSPLAG00000012846 #22	mrpl4 (ENSPLAG00000012864)	ENSPLAG00000012875	ENSPLAG00000012891	sp2 (ENSPLAG00000012945)	socs7 (ENSPLAG00000012964)	ENSPLAG00000013004	mrpl45 (ENSPLAG00000013012)	npepps (ENSPLAG00000013112)	zgc:77929 (ENSPLAG00000000307)	mrpl21 (ENSPLAG00000013159)	WIPF2 (ENSPLAG00000013180)	cdc6 (ENSPLAG00000013193)	ENSPLAG00000013204
Guppy	MODERN SPECIES	439	hoga1 (ENSPREG00000021261)	MORN4 (ENSPREG00000021271)	ENSPREG00000021280	ENSPREG00000021295	slit1b (ENSPREG00000021322)	ARHGAP19 (ENSPREG00000021370)	ENSPREG00000021405	dla (ENSPREG00000021420)	ENSPREG00000021438	hk1 (ENSPREG00000021465)	myom2a (ENSPREG00000021506)	ENSPREG00000021538	lgsn (ENSPREG00000021552)	ptp4a1 (ENSPREG00000021559)	ENSPREG00000021570	ENSPREG00000021582 #22	mrpl4 (ENSPREG00000021621)	ENSPREG00000021685	sp2 (ENSPREG00000021712)	socs7 (ENSPREG00000021721)	ENSPREG00000021735	mrpl45 (ENSPREG00000021754)	npepps (ENSPREG00000021780)	zgc:77929 (ENSPREG00000021796)	ENSPREG00000021801	mrpl21 (ENSPREG00000021810)	WIPF2 (ENSPREG00000021819)	cdc6 (ENSPREG00000021828)	ENSPREG00000021843	nup133 (ENSPREG00000021865)	taf5l (ENSPREG00000021901)
Platyfish	MODERN SPECIES	19	CNNM1 (ENSXMAG00000005657)	hoga1 (ENSXMAG00000005650)	MORN4 (ENSXMAG00000005648)	ENSXMAG00000027531	slit1b (ENSXMAG00000014475)	ENSXMAG00000014472	ENSXMAG00000030012	dla (ENSXMAG00000014461)	ENSXMAG00000014452	hk1 (ENSXMAG00000008211)	myom2a (ENSXMAG00000014415)	ENSXMAG00000014414	lgsn (ENSXMAG00000014412)	ptp4a1 (ENSXMAG00000014405)	col9a1a (ENSXMAG00000014357)	ENSXMAG00000014356 #22	mrpl4 (ENSXMAG00000030102)	ENSXMAG00000023544	ENSXMAG00000009446	sp2 (ENSXMAG00000014321)	socs7 (ENSXMAG00000014313)	ENSXMAG00000022613	mrpl45 (ENSXMAG00000014301)	npepps (ENSXMAG00000014198)	zgc:77929 (ENSXMAG00000020296)	mrpl21 (ENSXMAG00000020294)	WIPF2 (ENSXMAG00000014184)	cdc6 (ENSXMAG00000014169)	ENSXMAG00000029289	nup133 (ENSXMAG00000014130)	taf5l (ENSXMAG00000023303)
NAME_4	ANCESTRAL SPECIES	74	ENSGT00530000063604.A	ENSGT00940000180052	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966
Sheepshead minnow	MODERN SPECIES	909						ENSCVAG00000021586	RHOU (ENSCVAG00000021561)	dla (ENSCVAG00000021554)	ENSCVAG00000021507	hk1 (ENSCVAG00000021492)	myom2a (ENSCVAG00000021355)	ENSCVAG00000021184	lgsn (ENSCVAG00000021182)	ptp4a1 (ENSCVAG00000021163)	col9a1a (ENSCVAG00000021135)	ENSCVAG00000021123 #22
Mummichog	MODERN SPECIES	2270	hoga1 (ENSFHEG00000002680)	ENSFHEG00000002684	ENSFHEG00000002691	ENSFHEG00000002734	slit1b (ENSFHEG00000002796)	ARHGAP19 (ENSFHEG00000002810)	ENSFHEG00000002822	dla (ENSFHEG00000002839)	ENSFHEG00000002870	hk1 (ENSFHEG00000002913)	myom2a (ENSFHEG00000003011)	ENSFHEG00000003030	lgsn (ENSFHEG00000003054)	ptp4a1 (ENSFHEG00000003076)	ENSFHEG00000003088	ENSFHEG00000003112 #22	mrpl4 (ENSFHEG00000003126)	ENSFHEG00000003161	sp2 (ENSFHEG00000003176)	socs7 (ENSFHEG00000003189)	ENSFHEG00000003212	mrpl45 (ENSFHEG00000003230)	npepps (ENSFHEG00000003285)	zgc:77929 (ENSFHEG00000000093)	mrpl21 (ENSFHEG00000003319)	ENSFHEG00000000889	cdc6 (ENSFHEG00000003348)	ENSFHEG00000003366	nup133 (ENSFHEG00000003388)	taf5l (ENSFHEG00000003396)	capn9 (ENSFHEG00000003416)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.c	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.c	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	33	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.c	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a
Haplochromini	DUPLICATION
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	45	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e.c	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848.q.a #22	ENSGT00390000014512.c
Burton s mouthbrooder	MODERN SPECIES	546	hoga1 (ENSHBUG00000016549)	ENSHBUG00000016469	MORN4 (ENSHBUG00000016465)	ENSHBUG00000016442	slit1b (ENSHBUG00000016427)	ARHGAP19 (ENSHBUG00000016400)	ENSHBUG00000016386	dla (ENSHBUG00000016370)	ENSHBUG00000016325	hk1 (ENSHBUG00000016275)	myom2a (ENSHBUG00000016197)	lgsn (ENSHBUG00000016181)	ptp4a1 (ENSHBUG00000016172)	col9a1a (ENSHBUG00000016144)	baxa (ENSHBUG00000016134)	ENSHBUG00000016126 #22
Haplochromini_A	ANCESTRAL SPECIES	50	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e.c	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848.q.a #22	ENSGT00390000014512.c
P. nyererei	MODERN SPECIES	545	hoga1 (ENSPNYG00000000964)	MORN4 (ENSPNYG00000000991)	ENSPNYG00000001023	ENSPNYG00000001040	ENSPNYG00000001049	ENSPNYG00000001078	ARHGAP19 (ENSPNYG00000001117)	ENSPNYG00000001159	dla (ENSPNYG00000001178)	ENSPNYG00000001220	hk1 (ENSPNYG00000001261)	myom2a (ENSPNYG00000001345)	lgsn (ENSPNYG00000001618)	ptp4a1 (ENSPNYG00000001652)	ENSPNYG00000001677	ENSPNYG00000001699 #22	mrpl4 (ENSPNYG00000001736)
Haplochromini_B	ANCESTRAL SPECIES	93	ENSGT00940000157525.a	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e.c	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848.q.a #22	ENSGT00390000014512.c
Zebra mbuna	MODERN SPECIES	331											myom2a (ENSMZEG00005025929)	ENSMZEG00005025928	lgsn (ENSMZEG00005025926)	ptp4a1 (ENSMZEG00005025924)	col9a1a (ENSMZEG00005025922)	ENSMZEG00005025921 #22	mrpl4 (ENSMZEG00005025920)
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000008848.q.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000008848.q.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000008848.q.b #22
Zebra mbuna	MODERN SPECIES	587																ENSMZEG00005026080 #22	ENSMZEG00005026076
Haplochromini	ANCESTRAL SPECIES																	ENSGT00390000008848.r #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00390000008848.r #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000008848.r #22
Eastern happy	MODERN SPECIES	18	ENSACLG00000012019	hoga1 (ENSACLG00000011903)	MORN4 (ENSACLG00000011891)	ENSACLG00000011857	slit1b (ENSACLG00000011523)	ARHGAP19 (ENSACLG00000011516)	ENSACLG00000011506	dla (ENSACLG00000011496)	ENSACLG00000011491	hk1 (ENSACLG00000011311)	myom2a (ENSACLG00000011219)	ENSACLG00000011207	lgsn (ENSACLG00000011199)	ptp4a1 (ENSACLG00000011171)	ENSACLG00000011158	ENSACLG00000011090 #22	mrpl4 (ENSACLG00000011069)	ENSACLG00000011058	ENSACLG00000010964	ENSACLG00000010942	c3b.2 (ENSACLG00000010814)	yju2b (ENSACLG00000010787)	gtf3aa (ENSACLG00000010768)	PSPN (ENSACLG00000010694)	wdr83 (ENSACLG00000010671)	wdr83os (ENSACLG00000010662)	cacna1ab (ENSACLG00000010494)	ier2b (ENSACLG00000010465)	stx10 (ENSACLG00000010440)	NACC1 (ENSACLG00000010144)	TRMT1 (ENSACLG00000010073)
Nile tilapia	MODERN SPECIES	18	MORN4 (ENSONIG00000000257)	ENSONIG00000037769	ENSONIG00000000255	ENSONIG00000035807	slit1b (ENSONIG00000000202)	ARHGAP19 (ENSONIG00000032271)	ENSONIG00000000197	dla (ENSONIG00000000194)	ENSONIG00000031890	ENSONIG00000036388	hk1 (ENSONIG00000000186)	myom2a (ENSONIG00000000159)	ENSONIG00000000158	lgsn (ENSONIG00000000157)	ptp4a1 (ENSONIG00000000156)	hyls1 (ENSONIG00000000138) #22	mrpl4 (ENSONIG00000034546)	ENSONIG00000000119	sp2 (ENSONIG00000000117)	socs7 (ENSONIG00000039565)	ENSONIG00000000109	mrpl45 (ENSONIG00000000107)	npepps (ENSONIG00000000102)	zgc:77929 (ENSONIG00000020700)	MRPL21 (ENSONIG00000020699)	WIPF2 (ENSONIG00000000073)	cdc6 (ENSONIG00000000068)	ENSONIG00000024001	ENSONIG00000017072	ENSONIG00000031717	nup133 (ENSONIG00000000063)
Midas cichlid	MODERN SPECIES	415					ENSACIG00000011023	ENSACIG00000011040	ENSACIG00000011058	dla (ENSACIG00000011078)	ZBTB45 (ENSACIG00000011093)	hk1 (ENSACIG00000011107)	myom2a (ENSACIG00000011162)	ENSACIG00000011420	lgsn (ENSACIG00000011442)	ptp4a1 (ENSACIG00000011462)	ENSACIG00000011472	ENSACIG00000011487 #22	mrpl4 (ENSACIG00000011523)	ENSACIG00000011622	ENSACIG00000011672	sp2 (ENSACIG00000011751)	socs7 (ENSACIG00000011768)	ENSACIG00000011879	mrpl45 (ENSACIG00000011923)	npepps (ENSACIG00000012041)	MRPL21 (ENSACIG00000012089)	zgc:77929 (ENSACIG00000012106)	WIPF2 (ENSACIG00000012113)	ENSACIG00000012130	cdc6 (ENSACIG00000012154)	CCSAP (ENSACIG00000012200)	ACTA1 (ENSACIG00000012219)
Pomacentridae	ANCESTRAL SPECIES	67	ENSGT00530000063604.A	ENSGT00730000111173.h	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.d	ENSGT00940000154902	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529
Bicolor damselfish	MODERN SPECIES	588			SLIT1 (ENSSPAG00000009672)	ENSSPAG00000009769	ENSSPAG00000009789	ENSSPAG00000009850	dla (ENSSPAG00000009866)	ZBTB45 (ENSSPAG00000009891)	hk1 (ENSSPAG00000009905)	myom2a (ENSSPAG00000009941)	ENSSPAG00000010002	lgsn (ENSSPAG00000010008)	ptp4a1 (ENSSPAG00000010025)	col9a1a (ENSSPAG00000010054)	ENSSPAG00000010086	ENSSPAG00000010092 #22	mrpl4 (ENSSPAG00000010120)	ENSSPAG00000010133	ENSSPAG00000010189	sp2 (ENSSPAG00000010203)	socs7 (ENSSPAG00000010228)	ENSSPAG00000010294	mrpl45 (ENSSPAG00000010323)	npepps (ENSSPAG00000010341)	zgc:77929 (ENSSPAG00000010415)	MRPL21 (ENSSPAG00000010420)	WIPF2 (ENSSPAG00000010438)	cdc6 (ENSSPAG00000010459)
Pomacentridae_A	ANCESTRAL SPECIES	149															ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00730000111912.A.b
Spiny chromis	MODERN SPECIES	261														lig3 (ENSAPOG00000010404)	tmem248 (ENSAPOG00000010257)	ENSAPOG00000010222 #22	mrpl4 (ENSAPOG00000010156)	ENSAPOG00000010143	sp2 (ENSAPOG00000010115)	socs7 (ENSAPOG00000010066)	ENSAPOG00000010055	mrpl45 (ENSAPOG00000010039)	npepps (ENSAPOG00000010028)	zgc:77929 (ENSAPOG00000009941)	mrpl21 (ENSAPOG00000009928)	WIPF2 (ENSAPOG00000009894)	cdc6 (ENSAPOG00000009859)
Amphiprion	ANCESTRAL SPECIES	93	ENSGT00950000182812.H.ab.a.d	ENSGT00940000153464.B.z.a	ENSGT00530000063410.a.q.b	ENSGT00940000167432	ENSGT01080000258336	ENSGT01100000263601	ENSGT00940000155345.r	ENSGT00390000012029	ENSGT00940000158659	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00940000157935.a	ENSGT00390000008848 #22	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00730000111912.A.b
Clown anemonefish	MODERN SPECIES	2071										USP34 (ENSAOCG00000019160)	XPO1 (ENSAOCG00000018914)	FAM161A (ENSAOCG00000018826)	cct4 (ENSAOCG00000018781)	pus10 (ENSAOCG00000018687)	ENSAOCG00000018627	ENSAOCG00000018556 #22	mrpl4 (ENSAOCG00000018507)
Orange clownfish	MODERN SPECIES	17	vps54 (ENSAPEG00000007179)	ENSAPEG00000007092	ugp2a (ENSAPEG00000007049)	mdh1aa (ENSAPEG00000007003)	otx2a (ENSAPEG00000006978)	ENSAPEG00000006958	b3gnt2a (ENSAPEG00000006948)	commd1 (ENSAPEG00000006933)	USP34 (ENSAPEG00000006673)	XPO1 (ENSAPEG00000006583)	FAM161A (ENSAPEG00000006516)	cct4 (ENSAPEG00000006444)	pus10 (ENSAPEG00000006406)	ENSAPEG00000006350	col9a1a (ENSAPEG00000006274)	ENSAPEG00000006222 #22	mrpl4 (ENSAPEG00000006208)	ENSAPEG00000006143	ENSAPEG00000006126	sp2 (ENSAPEG00000006091)	socs7 (ENSAPEG00000006016)	ENSAPEG00000005753	mrpl45 (ENSAPEG00000005671)	npepps (ENSAPEG00000005556)	zgc:77929 (ENSAPEG00000005535)	MRPL21 (ENSAPEG00000005507)	WIPF2 (ENSAPEG00000005487)	cdc6 (ENSAPEG00000005384)	cdc6 (ENSAPEG00000005339)	CCSAP (ENSAPEG00000005321)	ACTA1 (ENSAPEG00000005287)
Tiger tail seahorse	MODERN SPECIES	106																ENSHCOG00000002027 #22	mrpl4 (ENSHCOG00000002016)	ENSHCOG00000002014	ENSHCOG00000002009	sp2 (ENSHCOG00000002002)	socs7 (ENSHCOG00000001990)	ENSHCOG00000000062	mrpl45 (ENSHCOG00000001966)	npepps (ENSHCOG00000001944)	ENSHCOG00000001927	zgc:77929 (ENSHCOG00000001924)	cdc6 (ENSHCOG00000001908)	ENSHCOG00000000059	ltv1 (ENSHCOG00000001882)	ENSHCOG00000021081	capn9 (ENSHCOG00000021059)
Pinecone sodierfish	MODERN SPECIES		ltv1 (ENSMMDG00005017677)	ENSMMDG00005017685	capn9 (ENSMMDG00005017687)	taf5l (ENSMMDG00005017691)	nup133 (ENSMMDG00005017713)	ACTA1 (ENSMMDG00005019469)	CCSAP (ENSMMDG00005019471)	RHOU (ENSMMDG00005019473)	dla (ENSMMDG00005019474)	ENSMMDG00005019476	hk1 (ENSMMDG00005019477)	myom2a (ENSMMDG00005019483)	ENSMMDG00005019488	lgsn (ENSMMDG00005019491)	ptp4a1 (ENSMMDG00005019498)	ENSMMDG00005019536 #22	mrpl4 (ENSMMDG00005019545)	ENSMMDG00005019588	prokr1a (ENSMMDG00005020482)	ENSMMDG00005020486	fbxo48 (ENSMMDG00005020493)	sp2 (ENSMMDG00005020497)	socs7 (ENSMMDG00005020502)	ENSMMDG00005020513	mrpl45 (ENSMMDG00005020551)	npepps (ENSMMDG00005020607)	zgc:77929 (ENSMMDG00005021471)	WIPF2 (ENSMMDG00005021475)	cdc6 (ENSMMDG00005021479)	ENSMMDG00005021481	ENSMMDG00005021482
Cod	MODERN SPECIES	16	ENSGMOG00000022819	ltv1 (ENSGMOG00000005158)	capn9 (ENSGMOG00000005292)	taf5l (ENSGMOG00000005310)	nup133 (ENSGMOG00000032428)	ACTA1 (ENSGMOG00000028074)	ENSGMOG00000033926	RHOU (ENSGMOG00000005380)	dla (ENSGMOG00000005389)	ENSGMOG00000028619	HK1a (ENSGMOG00000005415)	myom2a (ENSGMOG00000036481)	ENSGMOG00000007616	lgsn (ENSGMOG00000007602)	ptp4a1 (ENSGMOG00000007574)	ENSGMOG00000007236 #22	mrpl4 (ENSGMOG00000007229)	ENSGMOG00000007063	sp2 (ENSGMOG00000007030)	socs7 (ENSGMOG00000006953)	ENSGMOG00000035842	mrpl45 (ENSGMOG00000006920)	ENSGMOG00000006894	ENSGMOG00000020253	ENSGMOG00000006892	ENSGMOG00000023523	ENSGMOG00000017851	ENSGMOG00000011477	ENSGMOG00000031245	stra6l (ENSGMOG00000019022)	ENSGMOG00000019035
Osteoglossiformes	ANCESTRAL SPECIES	742																ENSGT00390000008848 #22	ENSGT00390000014512
P. kingsleyae	MODERN SPECIES	21	capn9 (ENSPKIG00000008922)	ENSPKIG00000008841	ENSPKIG00000008825	ENSPKIG00000008801	ENSPKIG00000008787	EML6 (ENSPKIG00000008716)	SPTBN1 (ENSPKIG00000008490)	ENSPKIG00000008430	ACYP2 (ENSPKIG00000008416)	ppp1r12c (ENSPKIG00000008387)	ENSPKIG00000008308	ENSPKIG00000008249	ENSPKIG00000008202	chmp2a (ENSPKIG00000008158)	ENSPKIG00000008132	ENSPKIG00000008104 #22	mrpl4 (ENSPKIG00000008086)	RNF40 (ENSPKIG00000007994)	ENSPKIG00000007944	ENSPKIG00000007889	npepps (ENSPKIG00000007832)	sp2 (ENSPKIG00000007769)	krt94 (ENSPKIG00000007736)	SMARCE1 (ENSPKIG00000007708)	ccr7 (ENSPKIG00000007679)	ENSPKIG00000007597	mrpl45 (ENSPKIG00000007551)	ENSPKIG00000007519	sp6 (ENSPKIG00000007504)	ENSPKIG00000007402	ENSPKIG00000007357
Spotted gar	MODERN SPECIES	654	yipf3 (ENSLOCG00000016712)	polr1c (ENSLOCG00000016710)	fbxo28 (ENSLOCG00000016709)	degs1 (ENSLOCG00000016708)	nvl (ENSLOCG00000016706)	ENSLOCG00000016701	FAM98A (ENSLOCG00000016699)	rasgrp3 (ENSLOCG00000016689)	LTBP1 (ENSLOCG00000016686)	ttc27 (ENSLOCG00000016680)	BIRC6 (ENSLOCG00000016644)	yipf4 (ENSLOCG00000016640)	exo1 (ENSLOCG00000016639)	ENSLOCG00000016638	ENSLOCG00000016636	ENSLOCG00000016635 #22	mrpl4 (ENSLOCG00000016632)	arg1 (ENSLOCG00000016630)	heatr1 (ENSLOCG00000016628)	ENSLOCG00000016623	ENSLOCG00000016621	ACTN2 (ENSLOCG00000016619)	mtr (ENSLOCG00000016612)	RYR2 (ENSLOCG00000016594)	CHRM3 (ENSLOCG00000017368)	ENSLOCG00000016592	grem2b (ENSLOCG00000017367)	rgs7a (ENSLOCG00000016589)	fh (ENSLOCG00000016581)	kmo (ENSLOCG00000016577)	opn3 (ENSLOCG00000016574)
Reedfish	MODERN SPECIES	6	fbxo28 (ENSECRG00000015463)	degs1 (ENSECRG00000015517)	nvl (ENSECRG00000015733)	ENSECRG00000015791	FAM98A (ENSECRG00000015851)	rasgrp3 (ENSECRG00000015885)	LTBP1 (ENSECRG00000016077)	ENSECRG00000016583	BIRC6 (ENSECRG00000016833)	ENSECRG00000017334	COX6A1 (ENSECRG00000017354)	yipf4 (ENSECRG00000017405)	exo1 (ENSECRG00000017500)	ENSECRG00000017549	ENSECRG00000017592	ENSECRG00000017631 #22	mrpl4 (ENSECRG00000017669)	ARG1 (ENSECRG00000017727)	heatr1 (ENSECRG00000017886)	ENSECRG00000018044	ENSECRG00000018200	lmbrd1 (ENSECRG00000018259)	ADGRB3 (ENSECRG00000018341)	ENSECRG00000018420	ENSECRG00000018436	ENSECRG00000018476	ENSECRG00000018525	PHF3 (ENSECRG00000018544)	ptp4a1 (ENSECRG00000018581)	lgsn (ENSECRG00000018607)	ENSECRG00000018634