Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000156429.x	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116 #9	ENSGT00940000160214 #10	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.`b.b #26	ENSGT00940000153832.f.z.a #28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550 #37	ENSGT00390000007831	ENSGT00940000158113
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000156429.x	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116 #9	ENSGT00940000160214 #10	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.`b.b #26	ENSGT00940000153832.f.z.a #28	ENSGT00940000153832.f.z.b ##28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550 #37	ENSGT00390000007831
Mus	ANCESTRAL SPECIES	23	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116 #9	ENSGT00800000125327 #11	ENSGT00940000160214 #10	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.`b.b #26	ENSGT00940000153832.f.z.b ##28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550 #37	ENSGT00390000007831	ENSGT00940000158113
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116 #9	ENSGT00940000160214 #10	ENSGT00800000125327 #11	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.`b.b #26	ENSGT00940000153832.f.z.a.e #27	ENSGT00940000153832.f.z.b ##28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550 #37	ENSGT00390000007831
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116 #9	ENSGT00940000160214 #10	ENSGT00800000125327 #11	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.`b.b #26	ENSGT00940000153832.f.z.a.e #27	ENSGT00940000153832.f.z.a.f #28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550 #37	ENSGT00390000007831
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116 #9	ENSGT00940000160214 #10	ENSGT00800000125327 #11	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.`b.b #26	ENSGT00940000153832.f.z.a.e #27	ENSGT00940000153832.f.z.a.f #28	ENSGT00940000153832.f.z.b ##28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550 #37
spretus	MODERN SPECIES	1	Tmem19 (MGP_SPRETEiJ_G0016634) #7	Thap2 (MGP_SPRETEiJ_G0016635) #8	Zfc3h1 (MGP_SPRETEiJ_G0016636) #9	Lgr5 (MGP_SPRETEiJ_G0016637) #10	MGP_SPRETEiJ_G0016638 #11	Tspan8 (MGP_SPRETEiJ_G0016639) #12	Ptprr (MGP_SPRETEiJ_G0016640) #13	MGP_SPRETEiJ_G0016641 #14	Ptprb (MGP_SPRETEiJ_G0016642) #15	Kcnmb4 (MGP_SPRETEiJ_G0016643) #16	Cnot2 (MGP_SPRETEiJ_G0016644) #17	Myrfl (MGP_SPRETEiJ_G0016645) #18	Rab3ip (MGP_SPRETEiJ_G0016646) #19	MGP_SPRETEiJ_G0016647 #20	Best3 (MGP_SPRETEiJ_G0016648) #21	Lrrc10 (MGP_SPRETEiJ_G0016649) #22	Cct2 (MGP_SPRETEiJ_G0016650) #23	Frs2 (MGP_SPRETEiJ_G0016651) #24	Yeats4 (MGP_SPRETEiJ_G0016652) #25	9530003J23Rik (MGP_SPRETEiJ_G0016653) #26	Lyz2 (MGP_SPRETEiJ_G0016654) #27	Lyz1 (MGP_SPRETEiJ_G0016655) #28	MGP_SPRETEiJ_G0016656 #29	Cpsf6 (MGP_SPRETEiJ_G0016657) #30	Cpm (MGP_SPRETEiJ_G0016658) #31	Mdm2 (MGP_SPRETEiJ_G0016659) #32	Slc35e3 (MGP_SPRETEiJ_G0016660) #33	Nup107 (MGP_SPRETEiJ_G0016661) #34	Rap1b (MGP_SPRETEiJ_G0016662) #35	Mdm1 (MGP_SPRETEiJ_G0016663) #36	MGP_SPRETEiJ_G0016664 #37
Steppe mouse	MODERN SPECIES	2932						Ptprr (ENSMSIG00000008531) #13	Ptprb (ENSMSIG00000008638) #15	Kcnmb4 (ENSMSIG00000008796) #16	Cnot2 (ENSMSIG00000008826) #17	ENSMSIG00000009056	Myrfl (ENSMSIG00000009071) #18	ENSMSIG00000009124	Rab3ip (ENSMSIG00000009137) #19	Best3 (ENSMSIG00000009246) #21	ENSMSIG00000009268	Lrrc10 (ENSMSIG00000009273) #22	Cct2 (ENSMSIG00000009279) #23	Frs2 (ENSMSIG00000009335) #24	Yeats4 (ENSMSIG00000009358) #25	9530003J23Rik (ENSMSIG00000009383) #26
Mouse	MODERN SPECIES	1	Tbc1d15 (ENSMUSG00000020130)	Rab21 (ENSMUSG00000020132)	Tmem19 (ENSMUSG00000069520) #7	Thap2 (ENSMUSG00000020137) #8	Zfc3h1 (ENSMUSG00000034163) #9	Lgr5 (ENSMUSG00000020140) #10	A930009A15Rik (ENSMUSG00000092210) #11	Tspan8 (ENSMUSG00000034127) #12	Ptprr (ENSMUSG00000020151) #13	Ptprb (ENSMUSG00000020154) #15	Kcnmb4 (ENSMUSG00000054934) #16	Cnot2 (ENSMUSG00000020166) #17	Myrfl (ENSMUSG00000034057) #18	Rab3ip (ENSMUSG00000064181) #19	Best3 (ENSMUSG00000020169) #21	Lrrc10 (ENSMUSG00000060187) #22	Cct2 (ENSMUSG00000034024) #23	Frs2 (ENSMUSG00000020170) #24	Yeats4 (ENSMUSG00000020171) #25	9530003J23Rik (ENSMUSG00000020177) #26	Lyz2 (ENSMUSG00000069516) #27	Lyz1 (ENSMUSG00000069515) #28	Cpsf6 (ENSMUSG00000055531) #30	Cpm (ENSMUSG00000020183) #31	Mdm2 (ENSMUSG00000020184) #32	Slc35e3 (ENSMUSG00000060181) #33	Nup107 (ENSMUSG00000052798) #34	Rap1b (ENSMUSG00000052681) ##35	Mdm1 (ENSMUSG00000020212) #36	Il22 (ENSMUSG00000074695) #37	Gm32717 (ENSMUSG00000112216)
Ryukyu mouse	MODERN SPECIES	1	Rab21 (MGP_CAROLIEiJ_G0015811)	Tmem19 (MGP_CAROLIEiJ_G0015812) #7	Thap2 (MGP_CAROLIEiJ_G0015813) #8	Zfc3h1 (MGP_CAROLIEiJ_G0015814) #9	Lgr5 (MGP_CAROLIEiJ_G0015815) #10	MGP_CAROLIEiJ_G0015816 #11	Tspan8 (MGP_CAROLIEiJ_G0015817) #12	Ptprr (MGP_CAROLIEiJ_G0015818) #13	MGP_CAROLIEiJ_G0015819 #14	Ptprb (MGP_CAROLIEiJ_G0015820) #15	Kcnmb4 (MGP_CAROLIEiJ_G0015821) #16	Cnot2 (MGP_CAROLIEiJ_G0015822) #17	Myrfl (MGP_CAROLIEiJ_G0015823) #18	Rab3ip (MGP_CAROLIEiJ_G0015824) #19	Best3 (MGP_CAROLIEiJ_G0015825) #21	Lrrc10 (MGP_CAROLIEiJ_G0015826) #22	Cct2 (MGP_CAROLIEiJ_G0015827) #23	Frs2 (MGP_CAROLIEiJ_G0015828) #24	Yeats4 (MGP_CAROLIEiJ_G0015829) #25	9530003J23Rik (MGP_CAROLIEiJ_G0015830) #26	Lyz2 (MGP_CAROLIEiJ_G0015831) #27	MGP_CAROLIEiJ_G0015832 #29	Lyz1 (MGP_CAROLIEiJ_G0015833) #28	Cpsf6 (MGP_CAROLIEiJ_G0015834) #30	Cpm (MGP_CAROLIEiJ_G0015835) #31	Mdm2 (MGP_CAROLIEiJ_G0015836) #32	Slc35e3 (MGP_CAROLIEiJ_G0015837) #33	Nup107 (MGP_CAROLIEiJ_G0015838) #34	Rap1b (MGP_CAROLIEiJ_G0015839) ##35	Mdm1 (MGP_CAROLIEiJ_G0015840) #36	MGP_CAROLIEiJ_G0015841 #37
Shrew mouse	MODERN SPECIES	22	Rab21 (MGP_PahariEiJ_G0031276)	Tmem19 (MGP_PahariEiJ_G0031275) #7	Thap2 (MGP_PahariEiJ_G0031274) #8	Zfc3h1 (MGP_PahariEiJ_G0031273) #9	MGP_PahariEiJ_G0031272 #11	Lgr5 (MGP_PahariEiJ_G0031271) #10	Tspan8 (MGP_PahariEiJ_G0031270) #12	MGP_PahariEiJ_G0031269 #14	Ptprr (MGP_PahariEiJ_G0031268) #13	Ptprb (MGP_PahariEiJ_G0031267) #15	Kcnmb4 (MGP_PahariEiJ_G0031266) #16	Cnot2 (MGP_PahariEiJ_G0031265) #17	Myrfl (MGP_PahariEiJ_G0031264) #18	Rab3ip (MGP_PahariEiJ_G0031263) #19	Best3 (MGP_PahariEiJ_G0031262) #21	Lrrc10 (MGP_PahariEiJ_G0031261) #22	Cct2 (MGP_PahariEiJ_G0031260) #23	Frs2 (MGP_PahariEiJ_G0031259) #24	Yeats4 (MGP_PahariEiJ_G0031258) #25	9530003J23Rik (MGP_PahariEiJ_G0031257) #26	MGP_PahariEiJ_G0031256 #29	MGP_PahariEiJ_G0031255 #28	MGP_PahariEiJ_G0031254 #28	Cpsf6 (MGP_PahariEiJ_G0031253) #30	Cpm (MGP_PahariEiJ_G0031252) #31	Mdm2 (MGP_PahariEiJ_G0031251) #32	Slc35e3 (MGP_PahariEiJ_G0031250) #33	Nup107 (MGP_PahariEiJ_G0031249) #34	Rap1b (MGP_PahariEiJ_G0031248) ##35	Mdm1 (MGP_PahariEiJ_G0031247) #36	MGP_PahariEiJ_G0031246 #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000156429.x	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116.y.b #9	ENSGT00940000160214 #10	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25	ENSGT00940000153832.f.z.a #28	ENSGT00730000110905.b #30	ENSGT00940000158580 #31	ENSGT00530000063539.b.m.b #32	ENSGT00730000111164 #33	ENSGT00390000012080 #34	ENSGT00940000154429.r.f ##35	ENSGT00390000004106 #36	ENSGT00510000048550.c #37	ENSGT00390000007831	ENSGT00940000158113	ENSGT00390000017740.a.a
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a	ENSGT00940000158113	ENSGT00390000007831	ENSGT00510000048550.c #37	ENSGT00390000004106 #36	ENSGT00940000154429.r.f ##35	ENSGT00390000012080 #34	ENSGT00730000111164 #33	ENSGT00530000063539.b.m.b #32	ENSGT00940000158580 #31	ENSGT00730000110905.b #30	ENSGT00940000153832.f.z.a.l #28	ENSGT00940000157033 #24	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157777 #21	ENSGT00940000157998 #19	ENSGT00530000063626.b #18	ENSGT00390000001285 #17	ENSGT00950000183039.A #16	ENSGT00940000156088 #15	ENSGT00940000157212.B #13	ENSGT00940000161565.b #14	ENSGT00940000158153 #12	ENSGT00940000160214 #10	ENSGT00390000001116.y.b #9	ENSGT00940000161088 #8	ENSGT00390000017998 #7	ENSGT00940000156786
Chinese hamster chok1gshd	MODERN SPECIES	83															Frs2 (ENSCGRG00001012645) #24	Lrrc10 (ENSCGRG00001002108) #22	Cct2 (ENSCGRG00001007289) #23	Best3 (ENSCGRG00001012290) #21	Rab3ip (ENSCGRG00001020477) #19	Myrfl (ENSCGRG00001006167) #18	Cnot2 (ENSCGRG00001016595) #17	Kcnmb4 (ENSCGRG00001007400) #16	Ptprb (ENSCGRG00001016818) #15	Ptprr (ENSCGRG00001004077) #13	ENSCGRG00001016625 #14	Tspan8 (ENSCGRG00001020268) #12	ENSCGRG00001015303	Lgr5 (ENSCGRG00001004374) #10	Zfc3h1 (ENSCGRG00001011660) #9	Thap2 (ENSCGRG00001011633) #8	Tmem19 (ENSCGRG00001017163) #7
Golden Hamster	MODERN SPECIES	732	Mdm1 (ENSMAUG00000015500) #36	Rap1b (ENSMAUG00000020421) ##35	ENSMAUG00000009558	Nup107 (ENSMAUG00000022100) #34	Slc35e3 (ENSMAUG00000020157) #33	ENSMAUG00000022194 #32	Cpm (ENSMAUG00000003402) #31	Cpsf6 (ENSMAUG00000013240) #30	ENSMAUG00000006745 ##28	ENSMAUG00000000364 #28	ENSMAUG00000009695 #28	ENSMAUG00000017247 #29	Yeats4 (ENSMAUG00000007789) #25	ENSMAUG00000004048	Frs2 (ENSMAUG00000017762) #24	Lrrc10 (ENSMAUG00000014140) #22	Cct2 (ENSMAUG00000011514) #23	Best3 (ENSMAUG00000012191) #21	ENSMAUG00000017347 #19	Myrfl (ENSMAUG00000001194) #18	Cnot2 (ENSMAUG00000012049) #17	Kcnmb4 (ENSMAUG00000021332) #16	Ptprb (ENSMAUG00000021522) #15	ENSMAUG00000014901 #14	Ptprr (ENSMAUG00000000754) #13	Lgr5 (ENSMAUG00000020934) #10	ENSMAUG00000021091 #9	ENSMAUG00000010789 #9	Thap2 (ENSMAUG00000012471) #8	Tmem19 (ENSMAUG00000000365) #7	Rab21 (ENSMAUG00000014599)
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00940000156429.x	ENSGT00940000156786	ENSGT00390000017998 #7	ENSGT00940000161088 #8	ENSGT00390000001116.y.b #9	ENSGT00940000160214 #10	ENSGT00940000158153 #12	ENSGT00940000161565.b #14	ENSGT00940000157212.B #13	ENSGT00940000156088 #15	ENSGT00950000183039.A #16	ENSGT00390000001285 #17	ENSGT00530000063626.b #18	ENSGT00940000157998 #19	ENSGT00940000157777 #21	ENSGT00940000155040.b #22	ENSGT00550000074930 #23	ENSGT00940000157033 #24	ENSGT00940000155811 #25
Northern American deer mouse	MODERN SPECIES	9	Tbc1d15 (ENSPEMG00000014920)	Rab21 (ENSPEMG00000022641)	Tmem19 (ENSPEMG00000007783) #7	Thap2 (ENSPEMG00000004430) #8	Zfc3h1 (ENSPEMG00000023596) #9	Lgr5 (ENSPEMG00000021300) #10	Tspan8 (ENSPEMG00000022256) #12	Ptprr (ENSPEMG00000023593) #13	ENSPEMG00000030116 #14	Ptprb (ENSPEMG00000021454) #15	Kcnmb4 (ENSPEMG00000022894) #16	Cnot2 (ENSPEMG00000023296) #17	Myrfl (ENSPEMG00000022385) #18	Rab3ip (ENSPEMG00000023304) #19	Best3 (ENSPEMG00000025611) #21	Lrrc10 (ENSPEMG00000004624) #22	Cct2 (ENSPEMG00000022366) #23	Frs2 (ENSPEMG00000024403) #24	Yeats4 (ENSPEMG00000023320) #25	ENSPEMG00000031079 #28	ENSPEMG00000027203 #28	Mettl7b (ENSPEMG00000001761)	Itga7 (ENSPEMG00000001371)	Rdh5 (ENSPEMG00000017945)	Cd63 (ENSPEMG00000015664)	Gdf11 (ENSPEMG00000001312)	Sarnp (ENSPEMG00000000923)	Ormdl2 (ENSPEMG00000016964)	Dnajc14 (ENSPEMG00000013016)	Tmem198b (ENSPEMG00000018605)	Mmp19 (ENSPEMG00000015034)