Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000002762.a.b #7	ENSGT00940000158171 #8	ENSGT00390000006617 #9	ENSGT00390000014840.a #10	ENSGT00940000160875 #11	ENSGT01030000234586.A.a.b #12	ENSGT00390000013910 #13	ENSGT00940000156623 #14	ENSGT00940000162101 #15	ENSGT00940000157944 #16	ENSGT00940000163327 #17	ENSGT00940000161644 #18	ENSGT00940000160153 #19	ENSGT00940000154615 #20	ENSGT00940000160215 #21	ENSGT00940000160079 #22	ENSGT00940000157239 #23	ENSGT00940000156254 #24	ENSGT00940000159416 #25	ENSGT00940000157932 #26	ENSGT00950000182803.A.a.a #27	ENSGT00940000157588 #28	ENSGT00390000015077 #29	ENSGT00940000153592.B.a #30	ENSGT01030000234555.a.a.a.c.a #31	ENSGT00390000017523 #32	ENSGT00390000009194 #33	ENSGT00940000155093.b #34	ENSGT00390000018434 #35	ENSGT00390000003183 #36	ENSGT00940000162439
Ryukyu mouse	MODERN SPECIES	2	Shmt1 (MGP_CAROLIEiJ_G0016464) #7	Dhrs7b (MGP_CAROLIEiJ_G0016465) #8	Tmem11 (MGP_CAROLIEiJ_G0016466) #9	Natd1 (MGP_CAROLIEiJ_G0016467) #10	Map2k3 (MGP_CAROLIEiJ_G0016468) #11	Kcnj12 (MGP_CAROLIEiJ_G0016469) #12	Tnfrsf13b (MGP_CAROLIEiJ_G0016470) #13	Usp22 (MGP_CAROLIEiJ_G0016471) #14	Aldh3a1 (MGP_CAROLIEiJ_G0016472) #15	Aldh3a2 (MGP_CAROLIEiJ_G0016473) #16	Slc47a2 (MGP_CAROLIEiJ_G0016474) #17	Slc47a1 (MGP_CAROLIEiJ_G0016475) #18	Rnf112 (MGP_CAROLIEiJ_G0016476) #19	Mfap4 (MGP_CAROLIEiJ_G0016477) #20	Mapk7 (MGP_CAROLIEiJ_G0016478) #21	B9d1 (MGP_CAROLIEiJ_G0016479) #22	Epn2 (MGP_CAROLIEiJ_G0016480) #23	Grap (MGP_CAROLIEiJ_G0016481) #24	Slc5a10 (MGP_CAROLIEiJ_G0016482) #25	Fam83g (MGP_CAROLIEiJ_G0016483) #26	Prpsap2 (MGP_CAROLIEiJ_G0016484) #27	Ulk2 (MGP_CAROLIEiJ_G0016485) #28	Akap10 (MGP_CAROLIEiJ_G0016486) #29	Specc1 (MGP_CAROLIEiJ_G0016487) #30	Adora2b (MGP_CAROLIEiJ_G0016488) #31	Zswim7 (MGP_CAROLIEiJ_G0016489) #32	Ttc19 (MGP_CAROLIEiJ_G0016490) #33	Ncor1 (MGP_CAROLIEiJ_G0016491) #34	Pigl (MGP_CAROLIEiJ_G0016492) #35	Cenpv (MGP_CAROLIEiJ_G0016493) #36	Trpv2 (MGP_CAROLIEiJ_G0016494) #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000002762.a.b #7	ENSGT00940000158171 #8	ENSGT00390000006617 #9	ENSGT00390000014840.a #10	ENSGT00940000160875 #11	ENSGT01030000234586.A.a.b #12	ENSGT00390000013910 #13	ENSGT00940000156623 #14	ENSGT00940000162101 #15	ENSGT00940000157944 #16	ENSGT00940000163327 #17	ENSGT00940000161644 #18	ENSGT00940000160153 #19	ENSGT00940000154615 #20	ENSGT00940000160215 #21	ENSGT00940000160079 #22	ENSGT00940000157239 #23	ENSGT00940000156254 #24	ENSGT00940000157932 #26	ENSGT00940000159416 #25	ENSGT00950000182803.A.a.a.q #27	ENSGT00940000157588 #28	ENSGT00390000015077 #29	ENSGT00940000153592.B.a #30	ENSGT01030000234555.a.a.a.c.a #31	ENSGT00390000017523 #32	ENSGT00390000009194 #33	ENSGT00940000155093.b #34	ENSGT00390000018434 #35	ENSGT00390000003183 #36	ENSGT00940000162439
Mouse	MODERN SPECIES	2	Shmt1 (ENSMUSG00000020534) #7	Dhrs7b (ENSMUSG00000042569) #8	Tmem11 (ENSMUSG00000043284) #9	Natd1 (ENSMUSG00000018931) #10	Map2k3 (ENSMUSG00000018932) #11	Kcnj12 (ENSMUSG00000042529) #12	Tnfrsf13b (ENSMUSG00000010142) #13	Usp22 (ENSMUSG00000042506) #14	Aldh3a1 (ENSMUSG00000019102) #15	Aldh3a2 (ENSMUSG00000010025) #16	Slc47a2 (ENSMUSG00000069855) #17	Slc47a1 (ENSMUSG00000010122) #18	Rnf112 (ENSMUSG00000010086) #19	Mfap4 (ENSMUSG00000042436) #20	Mapk7 (ENSMUSG00000001034) #21	B9d1 (ENSMUSG00000001039) #22	Epn2 (ENSMUSG00000001036) #23	Grap (ENSMUSG00000004837) #24	Slc5a10 (ENSMUSG00000042371) #25	Fam83g (ENSMUSG00000042377) #26	Prpsap2 (ENSMUSG00000020528) #27	Ulk2 (ENSMUSG00000004798) #28	Akap10 (ENSMUSG00000047804) #29	Specc1 (ENSMUSG00000042331) #30	Adora2b (ENSMUSG00000018500) #31	Zswim7 (ENSMUSG00000014243) #32	Ttc19 (ENSMUSG00000042298) #33	Ncor1 (ENSMUSG00000018501) #34	Pigl (ENSMUSG00000014245) #35	Cenpv (ENSMUSG00000018509) #36	Ubb (ENSMUSG00000019505)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000002762.a.b #7	ENSGT00940000158171 #8	ENSGT00390000006617 #9	ENSGT00390000014840.a #10	ENSGT00940000160875 #11	ENSGT01030000234586.A.a.b #12	ENSGT00390000013910 #13	ENSGT00940000156623 #14	ENSGT00940000162101 #15	ENSGT00940000157944 #16	ENSGT00940000163327 #17	ENSGT00940000161644 #18	ENSGT00940000160153 #19	ENSGT00940000154615 #20	ENSGT00940000160215 #21	ENSGT00940000160079 #22	ENSGT00940000157239 #23	ENSGT00940000156254 #24	ENSGT00940000157932 #26	ENSGT00940000159416 #25	ENSGT00950000182803.A.a.a.q #27	ENSGT00940000157588 #28	ENSGT00390000015077 #29	ENSGT00940000153592.B.a #30	ENSGT01030000234555.a.a.a.c.a #31	ENSGT00390000017523 #32	ENSGT00390000009194 #33	ENSGT00940000155093.b #34	ENSGT00390000018434 #35	ENSGT00390000003183 #36	ENSGT00940000162439
spretus	MODERN SPECIES	2	Shmt1 (MGP_SPRETEiJ_G0017299) #7	Dhrs7b (MGP_SPRETEiJ_G0017300) #8	Tmem11 (MGP_SPRETEiJ_G0017301) #9	Natd1 (MGP_SPRETEiJ_G0017302) #10	Map2k3 (MGP_SPRETEiJ_G0017303) #11	Kcnj12 (MGP_SPRETEiJ_G0017304) #12	Tnfrsf13b (MGP_SPRETEiJ_G0017305) #13	Usp22 (MGP_SPRETEiJ_G0017306) #14	Aldh3a1 (MGP_SPRETEiJ_G0017307) #15	Aldh3a2 (MGP_SPRETEiJ_G0017308) #16	Slc47a2 (MGP_SPRETEiJ_G0017309) #17	Slc47a1 (MGP_SPRETEiJ_G0017310) #18	Rnf112 (MGP_SPRETEiJ_G0017311) #19	Mfap4 (MGP_SPRETEiJ_G0017312) #20	Mapk7 (MGP_SPRETEiJ_G0017313) #21	B9d1 (MGP_SPRETEiJ_G0017314) #22	Epn2 (MGP_SPRETEiJ_G0017315) #23	Grap (MGP_SPRETEiJ_G0017316) #24	Slc5a10 (MGP_SPRETEiJ_G0017317) #25	Fam83g (MGP_SPRETEiJ_G0017318) #26	Prpsap2 (MGP_SPRETEiJ_G0017319) #27	Ulk2 (MGP_SPRETEiJ_G0017320) #28	Akap10 (MGP_SPRETEiJ_G0017321) #29	Specc1 (MGP_SPRETEiJ_G0017322) #30	Adora2b (MGP_SPRETEiJ_G0017323) #31	Zswim7 (MGP_SPRETEiJ_G0017324) #32	Ttc19 (MGP_SPRETEiJ_G0017325) #33	Ncor1 (MGP_SPRETEiJ_G0017326) #34	Pigl (MGP_SPRETEiJ_G0017327) #35	Cenpv (MGP_SPRETEiJ_G0017328) #36	MGP_SPRETEiJ_G0017329
Steppe mouse	MODERN SPECIES	46	ENSMSIG00000021354	Natd1 (ENSMSIG00000021341) #10	ENSMSIG00000021332	ENSMSIG00000021305 #11	Kcnj12 (ENSMSIG00000021296) #12	Tnfrsf13b (ENSMSIG00000021289) #13	Usp22 (ENSMSIG00000021279) #14	ENSMSIG00000021271	Aldh3a1 (ENSMSIG00000021241) #15	Aldh3a2 (ENSMSIG00000021126) #16	Slc47a2 (ENSMSIG00000021112) #17	Slc47a1 (ENSMSIG00000021064) #18	Rnf112 (ENSMSIG00000020976) #19	Mfap4 (ENSMSIG00000020948) #20	Mapk7 (ENSMSIG00000020837) #21	B9d1 (ENSMSIG00000020800) #22	Epn2 (ENSMSIG00000020653) #23	Grap (ENSMSIG00000020626) #24	Fam83g (ENSMSIG00000020601) #26	Slc5a10 (ENSMSIG00000020538) #25	Prpsap2 (ENSMSIG00000020503) #27	Ulk2 (ENSMSIG00000020256) #28	Akap10 (ENSMSIG00000020118) #29	Specc1 (ENSMSIG00000018651) #30	Adora2b (ENSMSIG00000018628) #31	ENSMSIG00000018616 #32	Ttc19 (ENSMSIG00000018495) #33	ENSMSIG00000018478	Ncor1 (ENSMSIG00000017542) #34	Pigl (ENSMSIG00000017496) #35	ENSMSIG00000017486