Hystricomorpha	ANCESTRAL SPECIES	3								ENSGT00940000162101 #14	ENSGT00940000157944 #15	ENSGT00940000163327 #17	ENSGT00940000161644 #18	ENSGT00940000160153 #19	ENSGT00940000154615 #20	ENSGT00940000160215 #21	ENSGT00860000135721	ENSGT00940000160079 #22	ENSGT00940000157239 #23	ENSGT00940000156254 #24	ENSGT00940000159416 #27	ENSGT00940000157932 #26	ENSGT00950000182803.A.a.a #28	ENSGT00940000157588 #10	ENSGT00390000015077 #11	ENSGT00940000153592.B.a	ENSGT01030000234555.a.a.a.c.a	ENSGT00390000017523	ENSGT00390000009194	ENSGT00940000155093.b	ENSGT00390000018434	ENSGT00390000003183	ENSGT00940000163680.x
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000013379 #7	ENSHGLG00000011782 #8	ENSHGLG00000044793 #9	ENSHGLG00000015142 #10	ENSHGLG00000015738 #11	ENSHGLG00000047955 #12	ENSHGLG00000021085 #13	ENSHGLG00000005779 #14	ALDH3A2 (ENSHGLG00000004669) #15	ENSHGLG00000039140 #16	ENSHGLG00000011530 #17	SLC47A1 (ENSHGLG00000008765) #18	RNF112 (ENSHGLG00000014434) #19	MFAP4 (ENSHGLG00000018435) #20	MAPK7 (ENSHGLG00000013226) #21	B9D1 (ENSHGLG00000041884) #22	EPN2 (ENSHGLG00000032563) #23	ENSHGLG00000003298 #24	ENSHGLG00000038108 #25	FAM83G (ENSHGLG00000007826) #26	ENSHGLG00000004321 #27	ENSHGLG00000003535 #28	ENSHGLG00000033829 #29	MAP2K3 (ENSHGLG00000040410) #30	NATD1 (ENSHGLG00000007125) #31	TMEM11 (ENSHGLG00000005715) #32	ENSHGLG00000003819 #33	ENSHGLG00000042780 #34	ENSHGLG00000039867 #35	ENSHGLG00000042495 #36	ENSHGLG00000044611 #37
Hystricomorpha_a	ANCESTRAL SPECIES									ENSGT00940000162101 #14	ENSGT00940000157944 #15	ENSGT00940000163327 #17	ENSGT00940000161644 #18	ENSGT00940000160153 #19	ENSGT00940000154615 #20	ENSGT00940000160215 #21	ENSGT00860000135721	ENSGT00940000160079 #22	ENSGT00940000157239 #23	ENSGT00940000156254 #24	ENSGT00940000159416 #27	ENSGT00940000157932 #26	ENSGT00950000182803.A.a.a #28	ENSGT00940000157588 #10	ENSGT00390000015077 #11	ENSGT00940000153592.B.a	ENSGT01030000234555.a.a.a.c.a	ENSGT00390000017523	ENSGT00390000009194	ENSGT00940000155093.b	ENSGT00390000018434	ENSGT00390000003183	ENSGT00940000162439
Guinea pig	MODERN SPECIES	71	SLC16A6 (ENSCPOG00000023177)	ARSG (ENSCPOG00000014338)	WIPI1 (ENSCPOG00000014341)	PRKAR1A (ENSCPOG00000004159)	FAM20A (ENSCPOG00000010447)	ABCA9 (ENSCPOG00000011990)	ABCA6 (ENSCPOG00000036808)	ENSCPOG00000023227	ALDH3A1 (ENSCPOG00000015670) #14	ALDH3A2 (ENSCPOG00000013785) #15	ENSCPOG00000039527 #17	SLC47A1 (ENSCPOG00000011224) #18	RNF112 (ENSCPOG00000013927) #19	MFAP4 (ENSCPOG00000026738) #20	MAPK7 (ENSCPOG00000027276) #21	B9D1 (ENSCPOG00000000603) #22	EPN2 (ENSCPOG00000004842) #23	ENSCPOG00000031331 #24	FAM83G (ENSCPOG00000023284) #26	SLC5A10 (ENSCPOG00000011115) #27	PRPSAP2 (ENSCPOG00000010989) #28	ENSCPOG00000031268
Hystricomorpha_b	ANCESTRAL SPECIES	22								ENSGT00940000162101 #14	ENSGT00940000157944 #15	ENSGT00940000163327 #17	ENSGT00940000161644 #18	ENSGT00940000160153 #19	ENSGT00940000154615 #20	ENSGT00940000160215 #21	ENSGT00860000135721	ENSGT00940000160079 #22	ENSGT00940000157239 #23	ENSGT00940000156254 #24	ENSGT00940000159416 #27	ENSGT00940000157932 #26	ENSGT00950000182803.A.a.a #28	ENSGT00940000157588 #10	ENSGT00390000015077 #11	ENSGT00940000153592.B.a	ENSGT01030000234555.a.a.a.c.a	ENSGT00390000017523	ENSGT00390000009194	ENSGT00940000155093.b	ENSGT00390000018434	ENSGT00390000003183	ENSGT00940000158512
Long-tailed chinchilla	MODERN SPECIES	174								ALDH3A1 (ENSCLAG00000013640) #14	ALDH3A2 (ENSCLAG00000013890) #15	ENSCLAG00000007388 #17	ENSCLAG00000012276	SLC47A1 (ENSCLAG00000010505) #18	RNF112 (ENSCLAG00000008759) #19	MFAP4 (ENSCLAG00000009440) #20	MAPK7 (ENSCLAG00000011109) #21	B9D1 (ENSCLAG00000013112) #22	EPN2 (ENSCLAG00000007382) #23	ENSCLAG00000010753 #24	SLC5A10 (ENSCLAG00000011277) #27	FAM83G (ENSCLAG00000008530) #26	PRPSAP2 (ENSCLAG00000008926) #28	ULK2 (ENSCLAG00000008483) #10	AKAP10 (ENSCLAG00000009378) #11	SPECC1 (ENSCLAG00000013165)	ADORA2B (ENSCLAG00000006111)	ZSWIM7 (ENSCLAG00000006174)	TTC19 (ENSCLAG00000006736)	NCOR1 (ENSCLAG00000017349)	PIGL (ENSCLAG00000008117)	ENSCLAG00000009258	LRRC75A (ENSCLAG00000010115)
Degu	DUPLICATION
Degu	MODERN SPECIES	381					ALDH3A1 (ENSODEG00000000680) #14	ALDH3A2 (ENSODEG00000000770) #15	ENSODEG00000000983 #17	ENSODEG00000001050	SLC47A1 (ENSODEG00000001124) #18	ENSODEG00000018676	RNF112 (ENSODEG00000000180) #19	ENSODEG00000018628	MFAP4 (ENSODEG00000000409) #20	MAPK7 (ENSODEG00000000439) #21	ENSODEG00000018601	ENSODEG00000000687 #22	EPN2 (ENSODEG00000000790) #23	ENSODEG00000018664	ENSODEG00000001194 #24	SLC5A10 (ENSODEG00000000154) #27	FAM83G (ENSODEG00000000249) #26	ENSODEG00000000337 #28
Degu	MODERN SPECIES	210	ENSODEG00000002558	ENSODEG00000002634	ENSODEG00000003591	WDR55 (ENSODEG00000003673)	ENSODEG00000003854	ENSODEG00000003215	TMCO6 (ENSODEG00000003263)	CD14 (ENSODEG00000003404)	ENSODEG00000003419	SLC35A4 (ENSODEG00000018919)	ENSODEG00000003539	ENSODEG00000003982	SRA1 (ENSODEG00000003997)	EIF4EBP3 (ENSODEG00000004026)	ANKHD1 (ENSODEG00000002733)	ENSODEG00000002830 #22	SLC4A9 (ENSODEG00000002886)	HBEGF (ENSODEG00000003356)	ENSODEG00000003400	CYSTM1 (ENSODEG00000003409)	IGIP (ENSODEG00000018907)	PURA (ENSODEG00000003471)	ENSODEG00000003501	PSD2 (ENSODEG00000002162)	CXXC5 (ENSODEG00000002416)	UBE2D2 (ENSODEG00000002451)	ENSODEG00000002461	STING1 (ENSODEG00000002487)	SMIM33 (ENSODEG00000002510)	ENSODEG00000002527	DNAJC18 (ENSODEG00000002783)