Clupeocephala	ANCESTRAL SPECIES	83	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000178019	ENSGT00390000004394	ENSGT00940000165873
Euteleosteomorpha	ANCESTRAL SPECIES	45	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000178019	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00940000173220
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT00940000169563	ENSGT00390000017961.db ##12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.b ##30	ENSGT00940000163474	ENSGT00940000178019	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00940000173220	ENSGT00390000004394	ENSGT00940000165873	ENSGT00940000163663.B.b
Salmoninae	ANCESTRAL SPECIES	147														ENSGT00940000164352.a.g #20	ENSGT00940000165237.b.b.d #21	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b #23	ENSGT00390000014795	ENSGT00930000150969.B.f	ENSGT00940000160577.a	ENSGT00920000149163.i	ENSGT00940000157625.a.b.f ##25	ENSGT00940000156201.a.a.e ##28	ENSGT00940000156372.s	ENSGT00940000165638.b.a.a ##30	ENSGT00940000157809.j.a.e.b.k ##31	ENSGT01000000215398.b ##32	ENSGT00940000154590 #33	ENSGT00940000164514.a.c.a ##35	ENSGT00390000008825.a.c.a.a ##36	ENSGT00940000163474
Salmoninae_a	ANCESTRAL SPECIES	95	ENSGT00940000163144.a.b.d.b.b.b ##7	ENSGT00940000165760.a	ENSGT00940000161824.f #8	ENSGT00510000047886.a.a.c #9	ENSGT00940000153560.b.b.a.g.h #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961.eb #12	ENSGT00950000182951.A.a.a.c.a.a.b #13	ENSGT00940000162800.f #14	ENSGT00940000156940.b.h #15	ENSGT00390000009492.f #16	ENSGT00500000044930.e.a.d #17	ENSGT00940000158812.j.a.p #18	ENSGT00940000164352.a.g #20	ENSGT00940000165237.b.b.d #21	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b #23	ENSGT00390000014795	ENSGT00930000150969.B.f	ENSGT00940000160577.a	ENSGT00920000149163.i	ENSGT00940000157625.a.b.f ##25	ENSGT00940000156201.a.a.e ##28	ENSGT00940000156372.s	ENSGT00940000165638.b.a.a ##30	ENSGT00940000159304.o.a #29	ENSGT00940000165638.a.a.d #30	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000157809.j.a.e.b.k ##31	ENSGT01000000215398.b ##32	ENSGT00940000154590.e ##33
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00940000163144.a.b.d.a.a #7	ENSGT00940000180063	ENSGT00940000161824.f #8	ENSGT00510000047886.a.a.c #9	ENSGT00940000153560.b.b.a.g.h #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961.eb #12	ENSGT00950000182951.A.a.a.c.a.a.b #13	ENSGT00940000162800.f #14	ENSGT00940000156940.b.h #15	ENSGT00390000009492.f #16	ENSGT00500000044930.e.a.d #17	ENSGT00940000158812.j.a.p #18	ENSGT00940000164352.a.g #20	ENSGT00940000165237.b.b.d #21	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b #23	ENSGT01000000222128 #26	ENSGT00940000157625.a.b.e #25	ENSGT00940000156201.a.a.f #28	ENSGT00940000156372.t	ENSGT00940000159304.o.b ##29	ENSGT00940000165638.b.a.b ##30	ENSGT01000000215398.a #32	ENSGT00940000157809.j.a.e.b.l #31	ENSGT00940000154590.f #33	ENSGT00940000156278.q ##34	ENSGT00940000164514.a.c.b #35	ENSGT00390000008825.a.c.a.b #36	ENSGT00950000182979.a.b.b.b.b.i.b.f #37	ENSGT00940000165873.c
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00390000009492.f #16	ENSGT00500000044930.e.a.d #17	ENSGT00940000158812.j.a.p #18	ENSGT00940000158812.j.b.b ##18	ENSGT00940000157651.g.a	ENSGT00530000063647.A.a #19	ENSGT00940000153095.c.a	ENSGT00390000006348	ENSGT00390000017606.a.b.h	ENSGT00990000204633.a.a.a.b	ENSGT00940000164352.b.r ##20	ENSGT00550000074902.o	ENSGT00940000153432.A.a.o.b	ENSGT00940000164352.a.g #20	ENSGT00940000165237.b.b.d #21	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b #23	ENSGT00960000193203 #24	ENSGT01000000222128 #26	ENSGT00940000157625.a.b.e #25	ENSGT00940000156201.a.a.f #28	ENSGT00940000156372.t	ENSGT00940000165638.b.a.b ##30	ENSGT00940000157809.j.a.e.b.l #31	ENSGT01000000215398.a #32	ENSGT00940000156278.q ##34	ENSGT00940000164514.a.c.b #35	ENSGT00390000008825.a.c.a.b #36	ENSGT00950000182979.a.b.b.b.b.i.b.f #37	ENSGT00940000165873.c	ENSGT00940000163663.B.b.c.a
Coho salmon	MODERN SPECIES	2	ENSOKIG00005006602 #7	bhlha15 (ENSOKIG00005006636) #8	TECPR1 (ENSOKIG00005006648) #9	baiap2l1a (ENSOKIG00005006714) #10	tmem130 (ENSOKIG00005006751) #11	ENSOKIG00005006818 #12	FAM20C (ENSOKIG00005006904) #13	foxl3 (ENSOKIG00005006948) #14	tom1l2 (ENSOKIG00005006959) #15	atpaf2 (ENSOKIG00005006994) #16	GID4 (ENSOKIG00005007022) #17	noxo1b (ENSOKIG00005007064) #18	ENSOKIG00005007116 #19	ENSOKIG00005007133 #20	ENSOKIG00005007181 #21	MEIOB (ENSOKIG00005007198) #22	ENSOKIG00005007239 #23	ENSOKIG00005007251 #24	GRID2IP (ENSOKIG00005007267) #25	ENSOKIG00005007325 #26	ENSOKIG00005007357 #27	arhgap17a (ENSOKIG00005007461) #28	aqp8a.1 (ENSOKIG00005009284) #29	ENSOKIG00005009297 #30	ENSOKIG00005009321 #31	ENSOKIG00005009329 #32	hbae4 (ENSOKIG00005009341) #33	ENSOKIG00005009450 #34	foxj1b (ENSOKIG00005010614) #35	UBALD1 (ENSOKIG00005010620) #36	ENSOKIG00005010626 #37
Chinook salmon	MODERN SPECIES		ENSOTSG00005027318	ENSOTSG00005027316	ENSOTSG00005027314	ENSOTSG00005027302	SLC38A10 (ENSOTSG00005027299)	ENSOTSG00005027297	ENSOTSG00005027296	ENSOTSG00005027294 #13	foxl3 (ENSOTSG00005027291) #14	tom1l2 (ENSOTSG00005027288) #15	atpaf2 (ENSOTSG00005027287) #16	GID4 (ENSOTSG00005027286) #17	noxo1b (ENSOTSG00005027285) #18	ENSOTSG00005027284 #19	ENSOTSG00005027283 #21	MEIOB (ENSOTSG00005027282) #22	pgrmc1 (ENSOTSG00005027281) #23	ENSOTSG00005027280 #24	zdhhc4 (ENSOTSG00005027279)	grid2ipb (ENSOTSG00005027268) #25	arhgap17a (ENSOTSG00005027248) #28	lcmt1 (ENSOTSG00005027246)	ENSOTSG00005027245 ##30	ENSOTSG00005027244	ENSOTSG00005027243 #32	ENSOTSG00005027242 #31	ENSOTSG00005027241 ##34	foxj1b (ENSOTSG00005027238) #35	UBALD1 (ENSOTSG00005027237) #36	ENSOTSG00005027236 #37	ENSOTSG00005027235
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000048027	ENSOMYG00000021890 #9	baiap2l1a (ENSOMYG00000021863) #10	tmem130 (ENSOMYG00000021837) #11	ENSOMYG00000071117	ENSOMYG00000021793	ENSOMYG00000059008	ENSOMYG00000021785 #13	ENSOMYG00000021779	tom1l2 (ENSOMYG00000021768) #15	atpaf2 (ENSOMYG00000021739) #16	GID4 (ENSOMYG00000021726) #17	noxo1b (ENSOMYG00000021685) #18	ENSOMYG00000072777 #19	ENSOMYG00000021619 #21	ENSOMYG00000021591 #22	ENSOMYG00000021568 #23	ENSOMYG00000021550	ENSOMYG00000021543	ENSOMYG00000056707	ENSOMYG00000021531 #25	ENSOMYG00000021512 #28	ENSOMYG00000049967	ENSOMYG00000070015 ##30	ENSOMYG00000021459 #31	hbae4 (ENSOMYG00000021449) #33	ENSOMYG00000055147	ENSOMYG00000070166	ENSOMYG00000073651	ENSOMYG00000043102	ENSOMYG00000046025 #34
Salmo	ANCESTRAL SPECIES	31	ENSGT00940000161824.f #8	ENSGT00510000047886.a.a.c #9	ENSGT00940000153560.b.b.a.g.h #10	ENSGT00950000183188.A.b.a #11	ENSGT00390000017961.eb #12	ENSGT01100000263907	ENSGT00950000182951.A.a.a.c.a.a.b #13	ENSGT00940000162800.f #14	ENSGT00940000158431.a.a.a.a.b.a.c.a.c	ENSGT00940000156940.b.h #15	ENSGT00390000009492.f #16	ENSGT00500000044930.e.a.d #17	ENSGT00940000158812.j.a.p #18	ENSGT00940000164352.a.g #20	ENSGT00940000165237.b.b.d #21	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b #23	ENSGT00930000150969.B.e	ENSGT00390000014795	ENSGT00930000150969.B.f	ENSGT00940000160577.a	ENSGT00920000149163.i	ENSGT00940000157625.a.b.f ##25	ENSGT00940000156201.a.a.e ##28	ENSGT00940000156372.s	ENSGT00940000165638.b.a.a ##30	ENSGT00940000165638.a.a.d #30	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000157809.j.a.e.b.k ##31	ENSGT01000000215398.b ##32	ENSGT00940000154590.e ##33
River trout	MODERN SPECIES	9	TECPR1 (ENSSTUG00000003757) #9	baiap2l1a (ENSSTUG00000003879) #10	tmem130 (ENSSTUG00000003928) #11	ENSSTUG00000004035 #12	ENSSTUG00000004072	ENSSTUG00000004096 #13	foxl3 (ENSSTUG00000004429) #14	tom1l2 (ENSSTUG00000004445) #15	ENSSTUG00000004481	atpaf2 (ENSSTUG00000004490) #16	GID4 (ENSSTUG00000004553) #17	noxo1b (ENSSTUG00000004561) #18	ENSSTUG00000004582 #19	ENSSTUG00000004596 #20	ENSSTUG00000004711 #21	MEIOB (ENSSTUG00000004716) #22	pgrmc1 (ENSSTUG00000004753) #23	MLST8 (ENSSTUG00000004762)	bricd5 (ENSSTUG00000004776)	ENSSTUG00000004801	ENSSTUG00000004811	zdhhc4 (ENSSTUG00000004831)	grid2ipb (ENSSTUG00000004857) #25	ENSSTUG00000004895	arhgap17a (ENSSTUG00000004922) #28	lcmt1 (ENSSTUG00000005702)	ENSSTUG00000005708 ##30	ENSSTUG00000005718 #31	ENSSTUG00000005731 #32	ENSSTUG00000005744 #34	foxj1b (ENSSTUG00000005853) #35
Atlantic salmon	MODERN SPECIES		tmem130 (ENSSSAG00000111828) #11	tmem130 (ENSSSAG00000119219) #11	ENSSSAG00000101241 #12	ENSSSAG00000000375	ENSSSAG00000106165	ENSSSAG00000000315 #13	foxl3 (ENSSSAG00000111353) #14	ENSSSAG00000097777	tom1l2 (ENSSSAG00000000172) #15	atpaf2 (ENSSSAG00000000161) #16	cq039 (ENSSSAG00000000149) #17	noxo1b (ENSSSAG00000102274) #18	ENSSSAG00000000136 #19	ENSSSAG00000000132 #20	ENSSSAG00000000122 #21	meiob (ENSSSAG00000005413) #22	ENSSSAG00000102775 #23	bricd5 (ENSSSAG00000005398)	ENSSSAG00000005390	ENSSSAG00000005384 #26	grid2ipb (ENSSSAG00000005353) #25	ENSSSAG00000107128 #27	arhgap17a (ENSSSAG00000005208) #28	ENSSSAG00000095092	ENSSSAG00000117726	aqp8aa1 (ENSSSAG00000005186) #29	ENSSSAG00000005171 #32	ENSSSAG00000100077 #31	rhbl4 (ENSSSAG00000004938) #34	foxj1b (ENSSSAG00000105536) #35	ENSSSAG00000107705 #36
Huchen	MODERN SPECIES	2446														ENSHHUG00000048056 #20	ENSHHUG00000048058 #21	MEIOB (ENSHHUG00000048061) #22	pgrmc1 (ENSHHUG00000048065) #23	mlst8 (ENSHHUG00000048068)	bricd5 (ENSHHUG00000048124)	pgp (ENSHHUG00000048125)	zdhhc4 (ENSHHUG00000048126)	grid2ipb (ENSHHUG00000048166) #25
Northern pike	MODERN SPECIES	4	TECPR1 (ENSELUG00000018176) #9	baiap2l1a (ENSELUG00000018225) #10	tmem130 (ENSELUG00000018248) #11	trrap (ENSELUG00000018399) ##12	FAM20C (ENSELUG00000018434) #13	foxl3 (ENSELUG00000030836) #14	tom1l2 (ENSELUG00000018476) #15	atpaf2 (ENSELUG00000001192) #16	GID4 (ENSELUG00000018541) #17	noxo1b (ENSELUG00000018551) #18	RNF151 (ENSELUG00000018574) #19	ENSELUG00000018620 #20	neurl2 (ENSELUG00000018631)	msrb1b (ENSELUG00000018663)	ENSELUG00000018675 #21	MEIOB (ENSELUG00000018701) #22	mlst8 (ENSELUG00000000801)	bricd5 (ENSELUG00000025950)	pgp (ENSELUG00000018770)	zdhhc4 (ENSELUG00000018782)	grid2ipb (ENSELUG00000018823) #25	arhgap17a (ENSELUG00000018904) #28	aqp8a.1 (ENSELUG00000018983) #29	hbae4 (ENSELUG00000019002) #33	ENSELUG00000019035 #34	foxj1b (ENSELUG00000019053) #35	UBALD1 (ENSELUG00000032018) #36	ENSELUG00000019069	MRTFB (ENSELUG00000019087) #37	ercc4 (ENSELUG00000019115)	cpped1 (ENSELUG00000019151)
Acanthomorphata	ANCESTRAL SPECIES	23	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00940000169563	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Pomacentridae	ANCESTRAL SPECIES	87			ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Pomacentridae_A	ANCESTRAL SPECIES	84			ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Amphiprion	ANCESTRAL SPECIES	98		ENSGT00390000004394.h.a.b	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Clown anemonefish	MODERN SPECIES	3347						FAM20C (ENSAOCG00000001342) ##13	foxl3 (ENSAOCG00000018658) #14	tom1l2 (ENSAOCG00000018747) #15	atpaf2 (ENSAOCG00000018784) #16	GID4 (ENSAOCG00000018811) #17	noxo1b (ENSAOCG00000018883) #18	ENSAOCG00000018910 #20	neurl2 (ENSAOCG00000002156)	msrb1b (ENSAOCG00000018941)	ENSAOCG00000018956 #21	ENSAOCG00000018968 #22	mlst8 (ENSAOCG00000018989)	bricd5 (ENSAOCG00000019003)	pgp (ENSAOCG00000019012)	zdhhc4 (ENSAOCG00000019029)	grid2ipb (ENSAOCG00000019165) #25
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000001594	ercc4 (ENSAPEG00000001664)	tmem130 (ENSAPEG00000001696) #11	nptx2b (ENSAPEG00000001704)	trrap (ENSAPEG00000001755) #12	FAM20C (ENSAPEG00000002057) ##13	foxl3 (ENSAPEG00000002092) #14	tom1l2 (ENSAPEG00000002115) #15	atpaf2 (ENSAPEG00000002201) #16	GID4 (ENSAPEG00000002217) #17	noxo1b (ENSAPEG00000002260) #18	ENSAPEG00000002267 #20	neurl2 (ENSAPEG00000002281)	msrb1b (ENSAPEG00000002294)	ENSAPEG00000002308 #21	ENSAPEG00000002332 #22	mlst8 (ENSAPEG00000002462)	bricd5 (ENSAPEG00000002474)	pgp (ENSAPEG00000002519)	zdhhc4 (ENSAPEG00000002530)	grid2ipb (ENSAPEG00000002545) #25	arhgap17a (ENSAPEG00000002629) #28	lcmt1 (ENSAPEG00000002717)	aqp8a.1 (ENSAPEG00000002773) #29	ENSAPEG00000002779 ##30	hbae5 (ENSAPEG00000002815)	ENSAPEG00000002835	hbbe3 (ENSAPEG00000002857) #31	hbae4 (ENSAPEG00000002862) #33	ENSAPEG00000002884 #34	foxj1b (ENSAPEG00000002988) #35
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4140																ENSAPOG00000018615 #22
Spiny chromis	MODERN SPECIES	4155																ENSAPOG00000018189 #22
Spiny chromis	MODERN SPECIES	3417																ENSAPOG00000015088 #22
Bicolor damselfish	MODERN SPECIES	2331															ENSSPAG00000012122 #21	ENSSPAG00000012004 #22	mlst8 (ENSSPAG00000011977)	bricd5 (ENSSPAG00000011956)	pgp (ENSSPAG00000011948)
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Lyretail cichlid	MODERN SPECIES	366	nptx2b (ENSNBRG00000019969)	ENSNBRG00000019950 #12	trrap (ENSNBRG00000019833) #12	FAM20C (ENSNBRG00000019780) ##13	foxl3 (ENSNBRG00000019756) #14	tom1l2 (ENSNBRG00000019739) #15	atpaf2 (ENSNBRG00000019727) #16	GID4 (ENSNBRG00000019701) #17	noxo1b (ENSNBRG00000019679) #18	ENSNBRG00000019665	ENSNBRG00000019649 #20	ENSNBRG00000019634 #20	neurl2 (ENSNBRG00000019616)	msrb1b (ENSNBRG00000019586)	ENSNBRG00000019568 #21	MEIOB (ENSNBRG00000019512) #22	mlst8 (ENSNBRG00000019476)	bricd5 (ENSNBRG00000019452)	pgp (ENSNBRG00000019446)	zdhhc4 (ENSNBRG00000019414)	grid2ipb (ENSNBRG00000019207) #25	arhgap17a (ENSNBRG00000019089) #28	lcmt1 (ENSNBRG00000019069)	aqp8a.1 (ENSNBRG00000019049) #29	ENSNBRG00000019034 ##30	hbae5 (ENSNBRG00000018453)	hbbe3 (ENSNBRG00000017797) #31	hbae4 (ENSNBRG00000017717) #33	ENSNBRG00000017678 #34	foxj1b (ENSNBRG00000017654) #35	ubald1b (ENSNBRG00000017644) #36
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b.e #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Burton s mouthbrooder	MODERN SPECIES	419	baiap2l1a (ENSHBUG00000021270) #10	tmem130 (ENSHBUG00000021255) #11	nptx2b (ENSHBUG00000000654)	trrap (ENSHBUG00000021191) #12	FAM20C (ENSHBUG00000020764) ##13	foxl3 (ENSHBUG00000020729) #14	tom1l2 (ENSHBUG00000020718) #15	ENSHBUG00000020696 #15	atpaf2 (ENSHBUG00000020685) #16	GID4 (ENSHBUG00000020660) #17	noxo1b (ENSHBUG00000020629) #18	ENSHBUG00000020613 #20	neurl2 (ENSHBUG00000020562)	msrb1b (ENSHBUG00000020545)	ENSHBUG00000020533 #21	MEIOB (ENSHBUG00000020520) #22	mlst8 (ENSHBUG00000020502)	bricd5 (ENSHBUG00000020511)	pgp (ENSHBUG00000020472)
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b.e #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
P. nyererei	MODERN SPECIES	300	tmem130 (ENSPNYG00000020146) #11	nptx2b (ENSPNYG00000020166)	ENSPNYG00000020206 #12	trrap (ENSPNYG00000020241) #12	FAM20C (ENSPNYG00000020386) ##13	foxl3 (ENSPNYG00000020423) #14	tom1l2 (ENSPNYG00000020437) #15	atpaf2 (ENSPNYG00000020483) #16	GID4 (ENSPNYG00000020490) #17	noxo1b (ENSPNYG00000020514) #18	ENSPNYG00000020570	ENSPNYG00000020648 #20	neurl2 (ENSPNYG00000020672)	msrb1b (ENSPNYG00000020707)	ENSPNYG00000020719 #21	MEIOB (ENSPNYG00000020742) #22	ENSPNYG00000020789	mlst8 (ENSPNYG00000020816)	bricd5 (ENSPNYG00000020843)	pgp (ENSPNYG00000020863)	zdhhc4 (ENSPNYG00000020867)	grid2ipb (ENSPNYG00000020897) #25	arhgap17a (ENSPNYG00000021046) #28	lcmt1 (ENSPNYG00000021096)	aqp8a.1 (ENSPNYG00000021135) #29	ENSPNYG00000021166 ##30	ENSPNYG00000021270	hbae5 (ENSPNYG00000000664)	hbbe3 (ENSPNYG00000001507) #31	hbae4 (ENSPNYG00000002413) #33	ENSPNYG00000002490 #34
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b.e #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Eastern happy	MODERN SPECIES	20	baiap2l1a (ENSACLG00000015328) #10	tmem130 (ENSACLG00000015380) #11	nptx2b (ENSACLG00000015439)	ENSACLG00000015473 #12	trrap (ENSACLG00000015555) #12	FAM20C (ENSACLG00000015693) ##13	foxl3 (ENSACLG00000015751) #14	tom1l2 (ENSACLG00000015776) #15	atpaf2 (ENSACLG00000015835) #16	GID4 (ENSACLG00000015877) #17	noxo1b (ENSACLG00000015891) #18	ENSACLG00000015942 #20	neurl2 (ENSACLG00000016065)	msrb1b (ENSACLG00000016096)	ENSACLG00000016122 #21	MEIOB (ENSACLG00000016141) #22	ENSACLG00000016210	mlst8 (ENSACLG00000016240)	bricd5 (ENSACLG00000016293)	pgp (ENSACLG00000016307)	zdhhc4 (ENSACLG00000016320)	grid2ipb (ENSACLG00000016457) #25	arhgap17a (ENSACLG00000016601) #28	lcmt1 (ENSACLG00000016783)	aqp8a.1 (ENSACLG00000016855) #29	ENSACLG00000016867 ##30	hbae5 (ENSACLG00000016905)	ENSACLG00000016916	hbbe3 (ENSACLG00000016926) #31	hbae4 (ENSACLG00000016935) #33	ENSACLG00000016945 #34
Zebra mbuna	MODERN SPECIES	1111	TECPR1 (ENSMZEG00005008470) #9	baiap2l1a (ENSMZEG00005008444) #10	tmem130 (ENSMZEG00005008428) #11	nptx2b (ENSMZEG00005008418)	trrap (ENSMZEG00005008221) #12	FAM20C (ENSMZEG00005008144) ##13	foxl3 (ENSMZEG00005008136) #14	tom1l2 (ENSMZEG00005008115) #15	atpaf2 (ENSMZEG00005008102) #16	GID4 (ENSMZEG00005008087) #17	noxo1b (ENSMZEG00005008076) #18	ENSMZEG00005008063 #20	neurl2 (ENSMZEG00005008051)	msrb1b (ENSMZEG00005008038)	ENSMZEG00005008033 #21	MEIOB (ENSMZEG00005007857) #22	ENSMZEG00005007832	mlst8 (ENSMZEG00005007814)	bricd5 (ENSMZEG00005007809)	pgp (ENSMZEG00005007806)	zdhhc4 (ENSMZEG00005007797)	grid2ipb (ENSMZEG00005007679) #25	arhgap17a (ENSMZEG00005007569) #28	lcmt1 (ENSMZEG00005007543)	aqp8a.1 (ENSMZEG00005007537) #29	ENSMZEG00005007524 ##30	hbae5 (ENSMZEG00005007518)	hbbe3 (ENSMZEG00005007502) #31	hbae4 (ENSMZEG00005007486) #33	ENSMZEG00005007407 #34	foxj1b (ENSMZEG00005007371) #35
Nile tilapia	MODERN SPECIES	20	baiap2l1a (ENSONIG00000019822) #10	tmem130 (ENSONIG00000033434) #11	nptx2b (ENSONIG00000019818)	trrap (ENSONIG00000019810) #12	FAM20C (ENSONIG00000027421) ##13	foxl3 (ENSONIG00000035394) #14	tom1l2 (ENSONIG00000019805) #15	atpaf2 (ENSONIG00000019804) #16	GID4 (ENSONIG00000019803) #17	noxo1b (ENSONIG00000019802) #18	ENSONIG00000028101	ENSONIG00000019800 #20	neurl2 (ENSONIG00000043135)	msrb1b (ENSONIG00000019798)	ENSONIG00000037628 #21	MEIOB (ENSONIG00000019795) #22	ENSONIG00000019794	mlst8 (ENSONIG00000019791)	bricd5 (ENSONIG00000035833)	pgp (ENSONIG00000019789)	zdhhc4 (ENSONIG00000019788)	grid2ipb (ENSONIG00000019786) #25	arhgap17a (ENSONIG00000019784) #28	lcmt1 (ENSONIG00000019782)	aqp8a.1 (ENSONIG00000019780) #29	ENSONIG00000019779 ##30	hbae5 (ENSONIG00000019777)	ENSONIG00000036578	hbbe3 (ENSONIG00000034901) #31	hbae4 (ENSONIG00000039402) #33	ENSONIG00000019770 #34
Midas cichlid	MODERN SPECIES	194	baiap2l1a (ENSACIG00000003033) #10	tmem130 (ENSACIG00000003313) #11	nptx2b (ENSACIG00000003351)	ENSACIG00000003373 #12	trrap (ENSACIG00000003402) #12	FAM20C (ENSACIG00000003548) ##13	foxl3 (ENSACIG00000003570) #14	tom1l2 (ENSACIG00000003576) #15	atpaf2 (ENSACIG00000003606) #16	GID4 (ENSACIG00000003629) #17	noxo1b (ENSACIG00000003643) #18	ENSACIG00000003666 #20	neurl2 (ENSACIG00000003721)	msrb1b (ENSACIG00000003729)	ENSACIG00000003745 #21	MEIOB (ENSACIG00000003755) #22	mlst8 (ENSACIG00000003877)	bricd5 (ENSACIG00000004089)	pgp (ENSACIG00000004116)	zdhhc4 (ENSACIG00000004139)	ENSACIG00000004163	grid2ipb (ENSACIG00000004177) #25	arhgap17a (ENSACIG00000004237) #28	lcmt1 (ENSACIG00000004341)	aqp8a.1 (ENSACIG00000004369) #29	ENSACIG00000004405 ##30	ENSACIG00000004571	hbae5 (ENSACIG00000004590)	hbbe3 (ENSACIG00000005236) #31	hbae4 (ENSACIG00000006089) #33	ENSACIG00000006145 #34
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Oryzias	ANCESTRAL SPECIES	11	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT01000000214725.F	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Oryzias_a	ANCESTRAL SPECIES	32	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT01000000214725.F	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Japanese Medaka HdrR	MODERN SPECIES	10	TECPR1 (ENSORLG00000003392) #9	baiap2l1a (ENSORLG00000003355) #10	tmem130 (ENSORLG00000003309) #11	nptx2b (ENSORLG00000003306)	trrap (ENSORLG00000003282) #12	FAM20C (ENSORLG00000003261) ##13	foxl3 (ENSORLG00000003248) #14	tom1l2 (ENSORLG00000003244) #15	atpaf2 (ENSORLG00000003200) #16	GID4 (ENSORLG00000003188) #17	noxo1b (ENSORLG00000003181) #18	ENSORLG00000003163 #20	neurl2 (ENSORLG00000003138)	msrb1b (ENSORLG00000003128)	ENSORLG00000026027 #21	ENSORLG00000003120 #22	mlst8 (ENSORLG00000003112)	bricd5 (ENSORLG00000028325)	pgp (ENSORLG00000003089)	zdhhc4 (ENSORLG00000003085)	grid2ipb (ENSORLG00000030008) #25	arhgap17a (ENSORLG00000028308) #28	lcmt1 (ENSORLG00000003071)	ENSORLG00000003054 ##30	ENSORLG00000003046	ENSORLG00000003020	hbbe2 (ENSORLG00000026120) #31	hbae4 (ENSORLG00000002990) #33	ENSORLG00000020174 #34	ENSORLG00000002983	foxj1b (ENSORLG00000025879) #35
Chinese medaka	MODERN SPECIES	537	baiap2l1a (ENSOSIG00000019749) #10	nptx2b (ENSOSIG00000019752)	trrap (ENSOSIG00000003751) #12	ENSOSIG00000003809	FAM20C (ENSOSIG00000003895) ##13	foxl3 (ENSOSIG00000005987) #14	tom1l2 (ENSOSIG00000005989) #15	atpaf2 (ENSOSIG00000006017) #16	ENSOSIG00000006035	GID4 (ENSOSIG00000006037) #17	noxo1b (ENSOSIG00000006040) #18	ENSOSIG00000006052 #20	neurl2 (ENSOSIG00000006218)	msrb1b (ENSOSIG00000006219)	ENSOSIG00000006221 #21	ENSOSIG00000006222 #22	bricd5 (ENSOSIG00000006224)	pgp (ENSOSIG00000006225)	zdhhc4 (ENSOSIG00000006226)	grid2ipb (ENSOSIG00000006227) #25	arhgap17a (ENSOSIG00000006251) #28	lcmt1 (ENSOSIG00000008647)	ENSOSIG00000008666 ##30	hbae5 (ENSOSIG00000008669)	hbae4 (ENSOSIG00000008671) #33	ENSOSIG00000008688 #34
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT01000000214725.E.b	ENSGT01000000214725.E.a	ENSGT01000000214725.F
Indian medaka	MODERN SPECIES	17	baiap2l1a (ENSOMEG00000006730) #10	tmem130 (ENSOMEG00000006782) #11	nptx2b (ENSOMEG00000006798)	ENSOMEG00000006827 #12	ENSOMEG00000006842 #12	FAM20C (ENSOMEG00000006886) ##13	foxl3 (ENSOMEG00000006898) #14	tom1l2 (ENSOMEG00000006987) #15	atpaf2 (ENSOMEG00000007022) #16	GID4 (ENSOMEG00000007074) #17	noxo1b (ENSOMEG00000007099) #18	ENSOMEG00000007160 #20	neurl2 (ENSOMEG00000007173)	msrb1b (ENSOMEG00000007188)	ENSOMEG00000007198 #21	ENSOMEG00000007227 #22	mlst8 (ENSOMEG00000007252)	bricd5 (ENSOMEG00000007262)	pgp (ENSOMEG00000007274)	zdhhc4 (ENSOMEG00000007290)	grid2ipb (ENSOMEG00000007318) #25	arhgap17a (ENSOMEG00000007398) #28	lcmt1 (ENSOMEG00000007468)	ENSOMEG00000007481 ##30	hbae5 (ENSOMEG00000007493)	ENSOMEG00000007503	hbbe3 (ENSOMEG00000007514) #31	hbae4 (ENSOMEG00000007528) #33	ENSOMEG00000007563 #34	ENSOMEG00000007614	ENSOMEG00000007626
Javanese ricefish	MODERN SPECIES	10	bhlha15 (ENSOJAG00000003013) #8	baiap2l1a (ENSOJAG00000002941) #10	ENSOJAG00000002930	nptx2b (ENSOJAG00000002885)	trrap (ENSOJAG00000002680) #12	FAM20C (ENSOJAG00000002606) ##13	foxl3 (ENSOJAG00000002558) #14	tom1l2 (ENSOJAG00000002525) #15	atpaf2 (ENSOJAG00000002490) #16	GID4 (ENSOJAG00000002480) #17	noxo1b (ENSOJAG00000002457) #18	ENSOJAG00000002440 #20	neurl2 (ENSOJAG00000002429)	msrb1b (ENSOJAG00000002421)	ENSOJAG00000002413 #21	ENSOJAG00000002398 #22	mlst8 (ENSOJAG00000002374)	bricd5 (ENSOJAG00000002361)	pgp (ENSOJAG00000002356)	zdhhc4 (ENSOJAG00000002346)	grid2ipb (ENSOJAG00000002309) #25	arhgap17a (ENSOJAG00000002115) #28	lcmt1 (ENSOJAG00000009709)	ENSOJAG00000009660 ##30	hbae5 (ENSOJAG00000009644)	hbbe3 (ENSOJAG00000009528) #31	hbae4 (ENSOJAG00000009500) #33	ENSOJAG00000009322 #34	ENSOJAG00000009299	ENSOJAG00000009262	ENSOJAG00000009245
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015014525	trrap (ENSNFUG00015014119) #12	ENSNFUG00015014009	star (ENSNFUG00015014000)	FAM20C (ENSNFUG00015013979) ##13	foxl3 (ENSNFUG00015013963) #14	TOM1L2 (ENSNFUG00015013922) #15	ATPAF2 (ENSNFUG00015013898) #16	GID4 (ENSNFUG00015013885) #17	noxo1b (ENSNFUG00015013882) #18	ENSNFUG00015013873 #20	neurl2 (ENSNFUG00015013863)	msrb1b (ENSNFUG00015013855)	HS3ST6 (ENSNFUG00015013850) #21	ENSNFUG00015013846	MEIOB (ENSNFUG00015013831) #22	MLST8 (ENSNFUG00015013814)	bricd5 (ENSNFUG00015013804)	PGP (ENSNFUG00015013798)	ZDHHC4 (ENSNFUG00015013790)	grid2ipb (ENSNFUG00015013747) #25	arhgap17a (ENSNFUG00015013542) #28	lcmt1 (ENSNFUG00015013483)	ENSNFUG00015013475 ##30	hbae5 (ENSNFUG00015013469)	ENSNFUG00015013463	hbbe3 (ENSNFUG00015013458) #31	ENSNFUG00015013449	ENSNFUG00015013445	NUF2 (ENSNFUG00015013438)	ENSNFUG00015013409
Mangrove rivulus	MODERN SPECIES	43											ubald1b (ENSKMAG00000006734) #36	foxj1b (ENSKMAG00000006749) #35	ENSKMAG00000006783 #34	msrb1b (ENSKMAG00000006858)	ENSKMAG00000006871 #21	ENSKMAG00000006905 #22	mlst8 (ENSKMAG00000007045)	bricd5 (ENSKMAG00000007081)	pgp (ENSKMAG00000007095)	zdhhc4 (ENSKMAG00000007116)	grid2ipb (ENSKMAG00000007141) #25	arhgap17a (ENSKMAG00000007197) #28	lcmt1 (ENSKMAG00000007248)	ENSKMAG00000007283 ##30	hbae5 (ENSKMAG00000007296)	hbbe3 (ENSKMAG00000007361) #31	ENSKMAG00000007795	hbae4 (ENSKMAG00000007808) #33	neurl2 (ENSKMAG00000007821)	ENSKMAG00000007831 #20	noxo1b (ENSKMAG00000007848) #18
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
NAME_4	ANCESTRAL SPECIES	15	ENSGT00950000182859.B	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000156278.xb.a #34	ENSGT00940000156278.xb.b #34
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	26																ENSCVAG00000022387 #22	ENSCVAG00000022379
Sheepshead minnow	MODERN SPECIES	21																ENSCVAG00000022507 #22	ENSCVAG00000022476
Mummichog	MODERN SPECIES	290	ENSFHEG00000016513	baiap2l1a (ENSFHEG00000016505) #10	tmem130 (ENSFHEG00000016497) #11	nptx2b (ENSFHEG00000016483)	trrap (ENSFHEG00000016413) #12	FAM20C (ENSFHEG00000015955) ##13	foxl3 (ENSFHEG00000015932) #14	tom1l2 (ENSFHEG00000015915) #15	atpaf2 (ENSFHEG00000015894) #16	GID4 (ENSFHEG00000015885) #17	noxo1b (ENSFHEG00000015879) #18	ENSFHEG00000015873 #20	neurl2 (ENSFHEG00000015838)	msrb1b (ENSFHEG00000015832)	ENSFHEG00000015821 #21	ENSFHEG00000000390 #22	mlst8 (ENSFHEG00000015660)	pgp (ENSFHEG00000015624)	zdhhc4 (ENSFHEG00000015598)
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00730000110975	ENSGT00940000163663.B.b	ENSGT00940000165873	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00940000178019	ENSGT00390000008825.a #36	ENSGT00940000164514.a #35	ENSGT00940000154590 #33	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000165638.a.b ##30	ENSGT00940000156372	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00510000047678.a.a.b	ENSGT00940000159689	ENSGT00940000164352.a #20	ENSGT00940000158812.j.a #18	ENSGT00500000044930.e.a #17	ENSGT00390000009492 #16	ENSGT00940000156940.b #15	ENSGT00940000162800 #14	ENSGT00950000182951.A.a.a.c.b ##13
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000162720.a.b.a	ENSGT00730000110975	ENSGT00940000163663.B.b.a	ENSGT00940000165873	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00940000178019	ENSGT00390000008825.a #36	ENSGT00940000164514.a #35	ENSGT00940000154590 #33	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000165638.a.b ##30	ENSGT00940000156372	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000159689	ENSGT00940000164352.a #20	ENSGT00940000158812.j.a #18	ENSGT00500000044930.e.a #17	ENSGT00390000009492 #16	ENSGT00940000156940.b #15	ENSGT00940000162800 #14	ENSGT00950000182951.A.a.a.c.b.d ##13	ENSGT00390000017961.cb #12
NAME_6	ANCESTRAL SPECIES	451																ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25
Sailfin molly	MODERN SPECIES	3472																ENSPLAG00000012923 #22	mlst8 (ENSPLAG00000012968)
Amazon molly	MODERN SPECIES	1148																ENSPFOG00000014271 #22	mlst8 (ENSPFOG00000014244)	bricd5 (ENSPFOG00000014229)	pgp (ENSPFOG00000014219)	zdhhc4 (ENSPFOG00000014197)	ENSPFOG00000014120 #25
Guppy	MODERN SPECIES	449	ENSPREG00000016592	ENSPREG00000016582	shisa9a (ENSPREG00000016559)	ercc4 (ENSPREG00000016530)	MRTFB (ENSPREG00000016477) #37	ENSPREG00000016457	ubald1b (ENSPREG00000016448) #36	foxj1b (ENSPREG00000016437) #35	ENSPREG00000016408 #34	hbae4 (ENSPREG00000016396) #33	hbbe3 (ENSPREG00000016388) #31	hbae5 (ENSPREG00000015837)	ENSPREG00000015771 ##30	lcmt1 (ENSPREG00000015745)	ENSPREG00000015733 #21	ENSPREG00000015701 #22	pgp (ENSPREG00000015686)	zdhhc4 (ENSPREG00000015676)	grid2ipb (ENSPREG00000015659) #25	ENSPREG00000015650	neurl2 (ENSPREG00000015640)	ENSPREG00000015592 #20	noxo1b (ENSPREG00000015576) #18	GID4 (ENSPREG00000015566) #17	atpaf2 (ENSPREG00000015550) #16	ENSPREG00000015538 #15	foxl3 (ENSPREG00000015529) #14	FAM20C (ENSPREG00000015492) ##13	ENSPREG00000015471 #12	ENSPREG00000015451 #12	ENSPREG00000015438
Platyfish	MODERN SPECIES	1	shisa9a (ENSXMAG00000012636)	cpped1 (ENSXMAG00000012639)	ercc4 (ENSXMAG00000007920)	MRTFB (ENSXMAG00000010665) #37	ENSXMAG00000021599	ubald1b (ENSXMAG00000011792) #36	foxj1b (ENSXMAG00000021262) #35	ENSXMAG00000026583 #34	hbae4 (ENSXMAG00000017354) #33	ENSXMAG00000022060	hbbe3 (ENSXMAG00000029665) #31	hbae5 (ENSXMAG00000025900)	ENSXMAG00000026595 ##30	lcmt1 (ENSXMAG00000017430)	ENSXMAG00000029541 #21	ENSXMAG00000011777 #22	mlst8 (ENSXMAG00000025970)	bricd5 (ENSXMAG00000024582)	pgp (ENSXMAG00000029375)	zdhhc4 (ENSXMAG00000027839)	grid2ipb (ENSXMAG00000011712) #25	arhgap17a (ENSXMAG00000000134) #28	msrb1b (ENSXMAG00000027955)	neurl2 (ENSXMAG00000000146)	ENSXMAG00000000148 #20	noxo1b (ENSXMAG00000029525) #18	GID4 (ENSXMAG00000000156) #17	atpaf2 (ENSXMAG00000000163) #16	ENSXMAG00000022873 #15	ENSXMAG00000023560	FAM20C (ENSXMAG00000015864) ##13
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Carangaria	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Seriola	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00390000013973.A.a.c.b.a	ENSGT00530000063702.b	ENSGT00940000159920.b	ENSGT00940000155698.B	ENSGT00390000016895	ENSGT00730000111029.a	ENSGT00940000166161	ENSGT00940000154322.B	ENSGT00940000158269.f.a
Greater amberjack	MODERN SPECIES	27	TECPR1 (ENSSDUG00000005290) #9	baiap2l1a (ENSSDUG00000005346) #10	tmem130 (ENSSDUG00000005365) #11	nptx2b (ENSSDUG00000005381)	trrap (ENSSDUG00000005417) #12	FAM20C (ENSSDUG00000005600) ##13	foxl3 (ENSSDUG00000005636) #14	tom1l2 (ENSSDUG00000005662) #15	atpaf2 (ENSSDUG00000005731) #16	GID4 (ENSSDUG00000005746) #17	noxo1b (ENSSDUG00000005765) #18	ENSSDUG00000005776 #20	neurl2 (ENSSDUG00000005789)	msrb1b (ENSSDUG00000005804)	ENSSDUG00000005812 #21	MEIOB (ENSSDUG00000005823) #22	MLST8 (ENSSDUG00000005876)	mlst8 (ENSSDUG00000005898)	bricd5 (ENSSDUG00000005922)	pgp (ENSSDUG00000005933)	zdhhc4 (ENSSDUG00000005941)	grid2ipb (ENSSDUG00000005989) #25	arhgap17a (ENSSDUG00000006161) #28	ENSSDUG00000006309	LMF1 (ENSSDUG00000006325)	sox8a (ENSSDUG00000006370)	ENSSDUG00000006389	cox19 (ENSSDUG00000006411)	ENSSDUG00000006433	ENSSDUG00000006462	ENSSDUG00000006488
Yellowtail amberjack	MODERN SPECIES	3181	TECPR1 (ENSSLDG00000004237) #9	baiap2l1a (ENSSLDG00000004340) #10	tmem130 (ENSSLDG00000004354) #11	nptx2b (ENSSLDG00000004376)	trrap (ENSSLDG00000004449) #12	FAM20C (ENSSLDG00000004757) ##13	foxl3 (ENSSLDG00000004803) #14	tom1l2 (ENSSLDG00000004820) #15	atpaf2 (ENSSLDG00000004840) #16	GID4 (ENSSLDG00000004857) #17	noxo1b (ENSSLDG00000004881) #18	ENSSLDG00000004900 #20	neurl2 (ENSSLDG00000004925)	msrb1b (ENSSLDG00000004938)	ENSSLDG00000004959 #21	MEIOB (ENSSLDG00000004986) #22	mlst8 (ENSSLDG00000005116)	bricd5 (ENSSLDG00000005165)	pgp (ENSSLDG00000005212)	zdhhc4 (ENSSLDG00000005222)	grid2ipb (ENSSLDG00000005268) #25
Barramundi perch	MODERN SPECIES	431							foxl3 (ENSLCAG00010028086) #14	tom1l2 (ENSLCAG00010028087) #15	atpaf2 (ENSLCAG00010028088) #16	GID4 (ENSLCAG00010028089) #17	noxo1b (ENSLCAG00010028090) #18	ENSLCAG00010028091 #20	neurl2 (ENSLCAG00010028092)	msrb1b (ENSLCAG00010028093)	ENSLCAG00010028094 #21	MEIOB (ENSLCAG00010028095) #22	mlst8 (ENSLCAG00010028096)	bricd5 (ENSLCAG00010028097)	pgp (ENSLCAG00010028098)	zdhhc4 (ENSLCAG00010028099)	grid2ipb (ENSLCAG00010028100) #25	arhgap17a (ENSLCAG00010028101) #28	lcmt1 (ENSLCAG00010028102)	aqp8a.1 (ENSLCAG00010028103) #29	ENSLCAG00010028104 ##30	hbae5 (ENSLCAG00010028105)	ENSLCAG00010028106	hbbe3 (ENSLCAG00010028107) #31	hbae4 (ENSLCAG00010028108) #33	ENSLCAG00010028115 #34	foxj1b (ENSLCAG00010028118) #35
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000178476	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Tongue sole	MODERN SPECIES	18	ENSCSEG00000000756	ENSCSEG00000000789	ENSCSEG00000000823	ENSCSEG00000000829 #12	trrap (ENSCSEG00000000834) #12	FAM20C (ENSCSEG00000000865) ##13	msrb1b (ENSCSEG00000000880)	neurl2 (ENSCSEG00000000886)	ENSCSEG00000000890 #20	noxo1b (ENSCSEG00000000896) #18	GID4 (ENSCSEG00000000898) #17	atpaf2 (ENSCSEG00000000905) #16	ENSCSEG00000000911 ##15	foxl3 (ENSCSEG00000000919) #14	ENSCSEG00000000921 #21	MEIOB (ENSCSEG00000000926) #22	mlst8 (ENSCSEG00000000934)	bricd5 (ENSCSEG00000000940)	pgp (ENSCSEG00000000945)	zdhhc4 (ENSCSEG00000000947)	grid2ipb (ENSCSEG00000000952) #25	ENSCSEG00000000964 #28	ENSCSEG00000000976 #31	lcmt1 (ENSCSEG00000000983)	aqp8a.1 (ENSCSEG00000000989) #29	ENSCSEG00000000995	hbae5 (ENSCSEG00000001002)	ENSCSEG00000001010	HBE1 (ENSCSEG00000001017) #31	ENSCSEG00000001190	ENSCSEG00000001193
Turbot	MODERN SPECIES	9	baiap2l1a (ENSSMAG00000009639) #10	tmem130 (ENSSMAG00000009625) #11	nptx2b (ENSSMAG00000009613)	ENSSMAG00000009184 #12	ENSSMAG00000009135 ##13	foxl3 (ENSSMAG00000009122) #14	ENSSMAG00000034961	tom1l2 (ENSSMAG00000009102) #15	atpaf2 (ENSSMAG00000009068) #16	GID4 (ENSSMAG00000009052) #17	noxo1b (ENSSMAG00000009040) #18	ENSSMAG00000009015 #20	neurl2 (ENSSMAG00000008992)	msrb1b (ENSSMAG00000008970)	ENSSMAG00000008954 #21	ENSSMAG00000008821 #22	mlst8 (ENSSMAG00000008770)	bricd5 (ENSSMAG00000008752)	pgp (ENSSMAG00000008748)	zdhhc4 (ENSSMAG00000008696)	ENSSMAG00000008695 #25	grid2ipb (ENSSMAG00000008656) #25	arhgap17a (ENSSMAG00000008554) #28	lcmt1 (ENSSMAG00000008498)	aqp8a.1 (ENSSMAG00000008477) #29	ENSSMAG00000008469 ##30	ENSSMAG00000008459	hbae4 (ENSSMAG00000021725) #33	hbae5 (ENSSMAG00000008444)	ENSSMAG00000008257 #34	foxj1b (ENSSMAG00000008197) #35
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Zig-zag eel	MODERN SPECIES	10	bhlha15 (ENSMAMG00000006657) #8	ENSMAMG00000006599 #9	baiap2l1a (ENSMAMG00000006582) #10	ENSMAMG00000006561	nptx2b (ENSMAMG00000006501)	trrap (ENSMAMG00000006314) #12	ENSMAMG00000006279 ##13	tom1l2 (ENSMAMG00000006252) #15	atpaf2 (ENSMAMG00000006243) #16	GID4 (ENSMAMG00000006219) #17	noxo1b (ENSMAMG00000006204) #18	ENSMAMG00000006182 #20	neurl2 (ENSMAMG00000006166)	msrb1b (ENSMAMG00000025564)	ENSMAMG00000006153 #21	ENSMAMG00000006016 #22	mlst8 (ENSMAMG00000005999)	bricd5 (ENSMAMG00000005980)	pgp (ENSMAMG00000005976)	zdhhc4 (ENSMAMG00000005970)	ENSMAMG00000024761	grid2ipb (ENSMAMG00000005902) #25	arhgap17a (ENSMAMG00000005495) #28	lcmt1 (ENSMAMG00000026824)	aqp8a.1 (ENSMAMG00000005456) #29	ENSMAMG00000004830 ##30	hbae5 (ENSMAMG00000004812)	hbbe3 (ENSMAMG00000004796) #31	hbae4 (ENSMAMG00000004789) #33	ENSMAMG00000004697 #34	foxj1b (ENSMAMG00000025608) #35
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000161824 #8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36
Siamese fighting fish	MODERN SPECIES	9	pvalb3 (ENSBSLG00000022268) ##7	bhlha15 (ENSBSLG00000022326) #8	TECPR1 (ENSBSLG00000022366) #9	baiap2l1a (ENSBSLG00000022471) #10	ENSBSLG00000022510	nptx2b (ENSBSLG00000022517)	trrap (ENSBSLG00000022902) #12	ENSBSLG00000023346 ##13	foxl3 (ENSBSLG00000023526) #14	tom1l2 (ENSBSLG00000023533) #15	atpaf2 (ENSBSLG00000023576) #16	GID4 (ENSBSLG00000023586) #17	noxo1b (ENSBSLG00000023596) #18	ENSBSLG00000023607 #20	ENSBSLG00000023656 #21	ENSBSLG00000023660 #22	mlst8 (ENSBSLG00000023673)	bricd5 (ENSBSLG00000023689)	pgp (ENSBSLG00000023691)	zdhhc4 (ENSBSLG00000023694)	arhgap17a (ENSBSLG00000015375) #28	lcmt1 (ENSBSLG00000016200)	aqp8a.1 (ENSBSLG00000016222) #29	ENSBSLG00000016227 ##30	hbae5 (ENSBSLG00000016230)	ENSBSLG00000016238	hbbe3 (ENSBSLG00000016244) #31	hbae4 (ENSBSLG00000016248) #33	ENSBSLG00000016795 #34	foxj1b (ENSBSLG00000017710) #35	ubald1b (ENSBSLG00000017716) #36
Climbing perch	MODERN SPECIES	10	ENSATEG00000012981 ##7	ENSATEG00000012871 #9	baiap2l1a (ENSATEG00000012469) #10	ENSATEG00000012428	nptx2b (ENSATEG00000012347)	trrap (ENSATEG00000012056) #12	ENSATEG00000011990 ##13	foxl3 (ENSATEG00000029901) #14	tom1l2 (ENSATEG00000011951) #15	atpaf2 (ENSATEG00000011939) #16	GID4 (ENSATEG00000011913) #17	noxo1b (ENSATEG00000011901) #18	ENSATEG00000011757 #20	neurl2 (ENSATEG00000011739)	ENSATEG00000011732 #21	ENSATEG00000011628 #22	mlst8 (ENSATEG00000011610)	bricd5 (ENSATEG00000011601)	pgp (ENSATEG00000011591)	zdhhc4 (ENSATEG00000011584)	grid2ipb (ENSATEG00000011535) #25	arhgap17a (ENSATEG00000011455) #28	lcmt1 (ENSATEG00000011385)	aqp8a.1 (ENSATEG00000011356) #29	ENSATEG00000011157 ##30	hbae5 (ENSATEG00000011075)	ENSATEG00000011059	hbbe3 (ENSATEG00000009603) #31	hbae4 (ENSATEG00000009576) #33	ENSATEG00000009442	ENSATEG00000009481 #34
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000154590 #33	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00390000004394	ENSGT00940000165873
Fugu	MODERN SPECIES		bhlha15 (ENSTRUG00000016815) #8	TECPR1 (ENSTRUG00000016816) #9	baiap2l1a (ENSTRUG00000016828) #10	ENSTRUG00000021481	nptx2b (ENSTRUG00000016838)	trrap (ENSTRUG00000016842) #12	fam20c2 (ENSTRUG00000019489) ##13	foxl3 (ENSTRUG00000025358) #14	tom1l2 (ENSTRUG00000016860) #15	atpaf2 (ENSTRUG00000016869) #16	GID4 (ENSTRUG00000016871) #17	noxo1b (ENSTRUG00000016872) #18	ENSTRUG00000016877 #20	neurl2 (ENSTRUG00000031963)	ENSTRUG00000016885 #21	MEIOB (ENSTRUG00000016886) #22	mlst8 (ENSTRUG00000016890)	pgp (ENSTRUG00000016899)	zdhhc4 (ENSTRUG00000016903)	grid2ipb (ENSTRUG00000016907) #25	lcmt1 (ENSTRUG00000016915)	arhgap17a (ENSTRUG00000016912) #28	hbae4 (ENSTRUG00000026211) #33	ENSTRUG00000016923	HBB (ENSTRUG00000028550) #31	hbae5 (ENSTRUG00000030273)	ENSTRUG00000016931 #34	foxj1b (ENSTRUG00000016940) #35	ubald1b (ENSTRUG00000030166) #36	ENSTRUG00000026888	MRTFB (ENSTRUG00000016949) #37
Tetraodon	MODERN SPECIES	13	nptx2b (ENSTNIG00000012891)	nptx2b (ENSTNIG00000012892)	ENSTNIG00000012893 #12	ENSTNIG00000012894 #12	FAM20C (ENSTNIG00000012895) ##13	FAM20C (ENSTNIG00000012896) ##13	foxl3 (ENSTNIG00000012897) #14	tom1l2 (ENSTNIG00000012898) #15	atpaf2 (ENSTNIG00000012899) #16	GID4 (ENSTNIG00000012900) #17	noxo1b (ENSTNIG00000001622) #18	ENSTNIG00000012901 #20	neurl2 (ENSTNIG00000012902)	msrb1b (ENSTNIG00000012903)	ENSTNIG00000012904 #21	MEIOB (ENSTNIG00000012905) #22	mlst8 (ENSTNIG00000012906)	pgp (ENSTNIG00000012907)	zdhhc4 (ENSTNIG00000012908)	grid2ipb (ENSTNIG00000012909) #25	arhgap17a (ENSTNIG00000012910) #28	lcmt1 (ENSTNIG00000012911)	hbae4 (ENSTNIG00000012912) #33	hbbe3 (ENSTNIG00000012913) #31	hbae5 (ENSTNIG00000012914)	ENSTNIG00000012915 #34	foxj1b (ENSTNIG00000012916) #35	ubald1b (ENSTNIG00000012917) #36	MRTFB (ENSTNIG00000012918) #37	ercc4 (ENSTNIG00000012919)	ENSTNIG00000012920
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Ballan wrasse	MODERN SPECIES	181					FAM20C (ENSLBEG00000024102) ##13	foxl3 (ENSLBEG00000024122) #14	tom1l2 (ENSLBEG00000024152) #15	atpaf2 (ENSLBEG00000024199) #16	GID4 (ENSLBEG00000024219) #17	noxo1b (ENSLBEG00000024271) #18	ENSLBEG00000024308 #20	neurl2 (ENSLBEG00000024323)	msrb1b (ENSLBEG00000024335)	ENSLBEG00000024346 #21	ENSLBEG00000024361	ENSLBEG00000024462 #22	mlst8 (ENSLBEG00000024545)	bricd5 (ENSLBEG00000024564)	pgp (ENSLBEG00000024578)	zdhhc4 (ENSLBEG00000024600)	grid2ipb (ENSLBEG00000024674) #25	arhgap17a (ENSLBEG00000024821) #28	lcmt1 (ENSLBEG00000024937)	aqp8a.1 (ENSLBEG00000024979) #29	hbae5 (ENSLBEG00000024993)	ENSLBEG00000025004 ##30	ENSLBEG00000025043	HBE1 (ENSLBEG00000025066) #31	ENSLBEG00000025083 #31	ENSLBEG00000025095 #31	hbae4 (ENSLBEG00000025111) #33
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36	ENSGT00950000182979.a.b.b.b.b.i.b #37
Gilthead seabream	MODERN SPECIES	12	TECPR1 (ENSSAUG00010013939) #9	baiap2l1a (ENSSAUG00010013912) #10	tmem130 (ENSSAUG00010013903) #11	nptx2b (ENSSAUG00010013900)	ENSSAUG00010013898	FAM20C (ENSSAUG00010013838) ##13	foxl3 (ENSSAUG00010013827) #14	tom1l2 (ENSSAUG00010013794) #15	atpaf2 (ENSSAUG00010013780) #16	GID4 (ENSSAUG00010013779) #17	noxo1b (ENSSAUG00010013776) #18	ENSSAUG00010013774 #20	neurl2 (ENSSAUG00010013772)	msrb1b (ENSSAUG00010013771)	ENSSAUG00010013770 #21	MEIOB (ENSSAUG00010013768) #22	mlst8 (ENSSAUG00010013764)	bricd5 (ENSSAUG00010013762)	ENSSAUG00010013761	zdhhc4 (ENSSAUG00010013760)	grid2ipb (ENSSAUG00010013741) #25	arhgap17a (ENSSAUG00010011620) #28	lcmt1 (ENSSAUG00010011445)	aqp8a.1 (ENSSAUG00010011442) #29	ENSSAUG00010011438 ##30	hbbe3 (ENSSAUG00010011429) #31	hbae5 (ENSSAUG00010011425)	hbae4 (ENSSAUG00010011422) #33	ENSSAUG00010009359 #34	foxj1b (ENSSAUG00010009334) #35	ubald1b (ENSSAUG00010009333) #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36	ENSGT00950000182979.a.b.b.b.b.i.b #37
Large yellow croaker	MODERN SPECIES	488	TECPR1 (ENSLCRG00005001959) #9	baiap2l1a (ENSLCRG00005001998) #10	tmem130 (ENSLCRG00005002204) #11	nptx2b (ENSLCRG00005002206)	trrap (ENSLCRG00005002229) #12	FAM20C (ENSLCRG00005002255) ##13	foxl3 (ENSLCRG00005002336) #14	tom1l2 (ENSLCRG00005002339) #15	atpaf2 (ENSLCRG00005002369) #16	GID4 (ENSLCRG00005002379) #17	noxo1b (ENSLCRG00005002390) #18	ENSLCRG00005002401 #20	neurl2 (ENSLCRG00005002413)	msrb1b (ENSLCRG00005002422)	ENSLCRG00005002428 #21	ENSLCRG00005002439 #22	mlst8 (ENSLCRG00005002477)	bricd5 (ENSLCRG00005002500)	pgp (ENSLCRG00005002505)	zdhhc4 (ENSLCRG00005002509)	grid2ipb (ENSLCRG00005002531) #25	arhgap17a (ENSLCRG00005002600) #28	lcmt1 (ENSLCRG00005002871)	aqp8a.1 (ENSLCRG00005002919) #29	ENSLCRG00005002920 ##30	hbae5 (ENSLCRG00005002925)	hbbe3 (ENSLCRG00005002975) #31	hbae4 (ENSLCRG00005002977) #33	ENSLCRG00005002993 #34	foxj1b (ENSLCRG00005003066) #35	ubald1b (ENSLCRG00005003069) #36
European seabass	MODERN SPECIES	11	bhlha15 (ENSDLAG00005033943) #8	ENSDLAG00005020318 #9	baiap2l1a (ENSDLAG00005020402) #10	tmem130 (ENSDLAG00005020473) #11	nptx2b (ENSDLAG00005020490)	ENSDLAG00005020499	trrap (ENSDLAG00005004633) #12	ENSDLAG00005009626 ##13	foxl3 (ENSDLAG00005009768) #14	TOM1L2 (ENSDLAG00005009785) #15	ENSDLAG00005034081 #17	noxo1b (ENSDLAG00005010019) #18	ENSDLAG00005010070 #20	neurl2 (ENSDLAG00005010208)	ENSDLAG00005033312 #21	ENSDLAG00005010234 #22	mlst8 (ENSDLAG00005010279)	pgp (ENSDLAG00005031158)	grid2ipb (ENSDLAG00005010428) #25	zdhhc4 (ENSDLAG00005010404)	arhgap17a (ENSDLAG00005010579) #28	lcmt1 (ENSDLAG00005011060)	aqp8a.1 (ENSDLAG00005011176) #29	ENSDLAG00005011229 ##30	hbae5 (ENSDLAG00005035008)	hbbe3 (ENSDLAG00005027857) #31	ENSDLAG00005011296 #34	FOXJ1-A (ENSDLAG00005032925) #35	FAM100A (ENSDLAG00005028739) #36	MRTFB (ENSDLAG00005011925) #37	ercc4 (ENSDLAG00005011989)
Perciformes	ANCESTRAL SPECIES	9	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000154590 #33	ENSGT00940000164514.a #35	ENSGT00390000008825.a #36	ENSGT01100000263632.b	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00390000004394
Stickleback	MODERN SPECIES	5	pvalb3 (ENSGACG00000009409) ##7	ENSGACG00000009404	bhlha15 (ENSGACG00000009403) #8	TECPR1 (ENSGACG00000009374) #9	baiap2l1a (ENSGACG00000009367) #10	nptx2b (ENSGACG00000009357)	trrap (ENSGACG00000009311) #12	tom1l2 (ENSGACG00000009286) #15	atpaf2 (ENSGACG00000009266) #16	GID4 (ENSGACG00000009253) #17	noxo1b (ENSGACG00000009244) #18	ENSGACG00000009233 #18	ENSGACG00000009226 #20	neurl2 (ENSGACG00000009224)	msrb1b (ENSGACG00000009221)	MEIOB (ENSGACG00000009213) #22	mlst8 (ENSGACG00000009191)	pgp (ENSGACG00000009185)	zdhhc4 (ENSGACG00000009162)	grid2ipb (ENSGACG00000009152) #25	ENSGACG00000009145 #28	lcmt1 (ENSGACG00000009130)	ENSGACG00000009127 ##30	ENSGACG00000009123	ENSGACG00000009121	NLRC3 (ENSGACG00000009105)	GCGR (ENSGACG00000009099)	WDR90 (ENSGACG00000009083)	rhot2 (ENSGACG00000009036)	h1-0 (ENSGACG00000009033)	rhbdl1 (ENSGACG00000009028)
Lumpfish	MODERN SPECIES	10	nptx2b (ENSCLMG00005011578)	polm (ENSCLMG00005011576)	trrap (ENSCLMG00005006184) #12	FAM20C (ENSCLMG00005005882) ##13	foxl3 (ENSCLMG00005005868) #14	tom1l2 (ENSCLMG00005005867) #15	atpaf2 (ENSCLMG00005005866) #16	GID4 (ENSCLMG00005005865) #17	noxo1b (ENSCLMG00005005864) #18	ENSCLMG00005005863 #18	ENSCLMG00005005862	ENSCLMG00005005861 #20	neurl2 (ENSCLMG00005005859)	msrb1b (ENSCLMG00005005857)	ENSCLMG00005005856 #21	ENSCLMG00005005855 #22	mlst8 (ENSCLMG00005005854)	bricd5 (ENSCLMG00005005852)	pgp (ENSCLMG00005005850)	zdhhc4 (ENSCLMG00005005848)	grid2ipb (ENSCLMG00005005845) #25	arhgap17a (ENSCLMG00005004001) #28	lcmt1 (ENSCLMG00005003996)	ENSCLMG00005003994 ##30	hbae5 (ENSCLMG00005003993)	hbae4 (ENSCLMG00005003992) #33	ENSCLMG00005003865 #34	foxj1b (ENSCLMG00005003851) #35	ubald1b (ENSCLMG00005003850) #36	ENSCLMG00005003847	MRTFB (ENSCLMG00005003652) #37
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.b ##13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00940000165237.b.b #21	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT00940000176976	ENSGT00940000154590 #33	ENSGT00940000164514.a #35
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000010954	trrap (ENSCGOG00000007596) #12	FAM20C (ENSCGOG00000007375) ##13	foxl3 (ENSCGOG00000007363) #14	ENSCGOG00000007360	tom1l2 (ENSCGOG00000007350) #15	atpaf2 (ENSCGOG00000007339) #16	GID4 (ENSCGOG00000007338) #17	noxo1b (ENSCGOG00000007331) #18	noxo1b (ENSCGOG00000007323) #18	noxo1b (ENSCGOG00000007318) #18	ENSCGOG00000007306 #20	neurl2 (ENSCGOG00000007303)	msrb1b (ENSCGOG00000007302)	ENSCGOG00000007300 #21	ENSCGOG00000007233 #22	mlst8 (ENSCGOG00000007209)	bricd5 (ENSCGOG00000007204)	pgp (ENSCGOG00000007202)	zdhhc4 (ENSCGOG00000007200)	ENSCGOG00000007182	grid2ipb (ENSCGOG00000007173) #25	ENSCGOG00000007170 #28	ENSCGOG00000007168 #28	lcmt1 (ENSCGOG00000006837)	arhgap17a (ENSCGOG00000006662) #28	lcmt1 (ENSCGOG00000006653)	lcmt1 (ENSCGOG00000006615)	aqp8a.1 (ENSCGOG00000006605) #29	ENSCGOG00000006599 ##30	hba1 (ENSCGOG00000006588)
Pike perch	MODERN SPECIES	89	baiap2l1a (ENSSLUG00000012906) #10	ENSSLUG00000012968	nptx2b (ENSSLUG00000012973)	trrap (ENSSLUG00000013020) #12	FAM20C (ENSSLUG00000013169) ##13	foxl3 (ENSSLUG00000013414) #14	tom1l2 (ENSSLUG00000013425) #15	atpaf2 (ENSSLUG00000013434) #16	GID4 (ENSSLUG00000013447) #17	noxo1b (ENSSLUG00000013460) #18	noxo1b (ENSSLUG00000013478) #18	ENSSLUG00000013492 #20	neurl2 (ENSSLUG00000013498)	msrb1b (ENSSLUG00000013503)	ENSSLUG00000013508 #21	MEIOB (ENSSLUG00000013516) #22	mlst8 (ENSSLUG00000013523)	bricd5 (ENSSLUG00000013533)	pgp (ENSSLUG00000013539)	zdhhc4 (ENSSLUG00000013564)	grid2ipb (ENSSLUG00000013568) #25	arhgap17a (ENSSLUG00000013625) #28	lcmt1 (ENSSLUG00000015712)	aqp8a.1 (ENSSLUG00000015716) #29	ENSSLUG00000015724 ##30	hbae5 (ENSSLUG00000015741)	hbbe3 (ENSSLUG00000015765) #31	hbae4 (ENSSLUG00000015769) #33	ENSSLUG00000015811 #34	foxj1b (ENSSLUG00000016253) #35	ubald1b (ENSSLUG00000016256) #36
Tiger tail seahorse	MODERN SPECIES	82	mst1 (ENSHCOG00000002166)	ENSHCOG00000002177	C3orf18 (ENSHCOG00000002182)	gnb1b (ENSHCOG00000002212)	tardbpb (ENSHCOG00000002224)	ENSHCOG00000002233	foxl3 (ENSHCOG00000002243) #14	tom1l2 (ENSHCOG00000002262) #15	atpaf2 (ENSHCOG00000002277) #16	GID4 (ENSHCOG00000002297) #17	noxo1b (ENSHCOG00000002329) #18	ENSHCOG00000002349 #20	neurl2 (ENSHCOG00000002358)	msrb1b (ENSHCOG00000002366)	ENSHCOG00000002373 #21	ENSHCOG00000002399 #22	mlst8 (ENSHCOG00000000070)	bricd5 (ENSHCOG00000002412)	pgp (ENSHCOG00000002413)	zdhhc4 (ENSHCOG00000002425)	ENSHCOG00000002430	grid2ipb (ENSHCOG00000002453) #25	arhgap17a (ENSHCOG00000002506) #28	lcmt1 (ENSHCOG00000002538)	ENSHCOG00000002546	ENSHCOG00000002554	ENSHCOG00000002568	sox9a (ENSHCOG00000002578)	ENSHCOG00000002604	ENSHCOG00000002612	VSTM4 (ENSHCOG00000002624)
Pinecone sodierfish	MODERN SPECIES	10	TECPR1 (ENSMMDG00005022524) #9	baiap2l1a (ENSMMDG00005022553) #10	ENSMMDG00005022561	nptx2b (ENSMMDG00005022564)	trrap (ENSMMDG00005022580) #12	FAM20C (ENSMMDG00005022586) ##13	foxl3 (ENSMMDG00005022587) #14	atpaf2 (ENSMMDG00005022589) #16	GID4 (ENSMMDG00005022590) #17	noxo1b (ENSMMDG00005022592) #18	ENSMMDG00005002458 #19	ENSMMDG00005002472 #20	neurl2 (ENSMMDG00005002499)	msrb1b (ENSMMDG00005002502)	ENSMMDG00005002513 #21	MEIOB (ENSMMDG00005002539) #22	mlst8 (ENSMMDG00005002561)	bricd5 (ENSMMDG00005002595)	pgp (ENSMMDG00005002605)	zdhhc4 (ENSMMDG00005002617)	grid2ipb (ENSMMDG00005002642) #25	arhgap17a (ENSMMDG00005002772) #28	ENSMMDG00005003677	lcmt1 (ENSMMDG00005003689)	aqp8a.1 (ENSMMDG00005003894) #29	ENSMMDG00005005224 ##30	HBE1 (ENSMMDG00005005226) #31	HBE1 (ENSMMDG00005005229) #31	ENSMMDG00005005234	hbae4 (ENSMMDG00005005297) #33	ENSMMDG00005005300
Cod	MODERN SPECIES	9	ENSGMOG00000003909 #9	baiap2l1a (ENSGMOG00000003872) #10	tmem130 (ENSGMOG00000035103) #11	nptx2b (ENSGMOG00000003855)	trrap (ENSGMOG00000003716) #12	ENSGMOG00000015538 #13	foxl3 (ENSGMOG00000024921) #14	tom1l2 (ENSGMOG00000005578) #15	atpaf2 (ENSGMOG00000005553) #16	GID4 (ENSGMOG00000005534) #17	noxo1b (ENSGMOG00000032993) #18	ENSGMOG00000023717 #20	ENSGMOG00000033069	msrb1b (ENSGMOG00000032780)	ENSGMOG00000027199 #21	ENSGMOG00000005404 #22	mlst8 (ENSGMOG00000005385)	bricd5 (ENSGMOG00000029047)	pgp (ENSGMOG00000024072)	zdhhc4 (ENSGMOG00000005351)	grid2ipb (ENSGMOG00000005318) #25	arhgap17a (ENSGMOG00000035125) #28	lcmt1 (ENSGMOG00000001230)	aqp8a.1 (ENSGMOG00000001220) #29	ENSGMOG00000015825 ##30	ENSGMOG00000022654 #32	ENSGMOG00000029846 #32	HbB4 (ENSGMOG00000026357) #31	hbae4 (ENSGMOG00000030505) #33	HbB2 (ENSGMOG00000026934) #31	ENSGMOG00000035245 #32
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161824 #8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT01000000215398 #32	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000154590 #33
Otophysi	ANCESTRAL SPECIES		ENSGT00940000161824 #8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00940000158812.j.a #18	ENSGT00530000063647.A.a #19	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a #31	ENSGT00940000178476	ENSGT00940000157809.j.a.e.b.b #31	ENSGT00940000154590 #33
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000161824 #8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961.e #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00940000158812.j.a #18	ENSGT00530000063647.A.a #19	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b.c #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.a #30	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a #31
Channel catfish	MODERN SPECIES	4	PRVT (ENSIPUG00000002890) ##7	bhlha15 (ENSIPUG00000002884) #8	TECPR1 (ENSIPUG00000002843) #9	Baiap2l1 (ENSIPUG00000002808) #10	nptx2 (ENSIPUG00000002783)	TRRAP (ENSIPUG00000002622) #12	Fam20c (ENSIPUG00000002578) #13	foxl3 (ENSIPUG00000002568) #14	tom1l2 (ENSIPUG00000002497) #15	atpaf2 (ENSIPUG00000002467) #16	noxo1 (ENSIPUG00000002454) #18	rnf151 (ENSIPUG00000002444) #19	ENSIPUG00000002420 #20	NEURL2 (ENSIPUG00000002414)	msrb1b (ENSIPUG00000002403)	meiob (ENSIPUG00000002385) #22	mlst8 (ENSIPUG00000002358)	bricd5 (ENSIPUG00000002352)	Pgp (ENSIPUG00000002337)	zdhhc4 (ENSIPUG00000002328)	grid2ipb (ENSIPUG00000002303) #25	arhgap17 (ENSIPUG00000002195) #28	lcmt1 (ENSIPUG00000002016)	Aqp8 (ENSIPUG00000001986) ##30	hbaa1 (ENSIPUG00000001974)	hbae4 (ENSIPUG00000001965) #33	ENSIPUG00000001940 #34	foxj1b (ENSIPUG00000001934) #35	mgrn1 (ENSIPUG00000001861)	ubald1a (ENSIPUG00000001843) #36	ENSIPUG00000001839
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000161824 #8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961.e #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00940000158812.j.a #18	ENSGT00530000063647.A.a #19	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b.c #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.a.a #30	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a #31	ENSGT00940000154590 #33	ENSGT00940000156278.se #34
Characoidei	ANCESTRAL SPECIES	50	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961.e #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00940000158812.j.a #18	ENSGT00530000063647.A.a #19	ENSGT00940000153095	ENSGT00940000164352.a #20	ENSGT00510000047678.a.a.b	ENSGT00940000159689	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b.c #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a #31	ENSGT00940000154590 #33	ENSGT00940000156278.se #34	ENSGT00940000164514.a #35	ENSGT00390000009925.a.k.b
Red-bellied piranha	MODERN SPECIES	111	ENSPNAG00000009748	bhlha15 (ENSPNAG00000006640) #8	TECPR1 (ENSPNAG00000009886) #9	baiap2l1a (ENSPNAG00000001352) #10	nptx2b (ENSPNAG00000009934)	trrap (ENSPNAG00000010139) #12	FAM20C (ENSPNAG00000010205) #13	foxl3 (ENSPNAG00000010226) #14	tom1l2 (ENSPNAG00000010290) #15	atpaf2 (ENSPNAG00000010405) #16	noxo1b (ENSPNAG00000010424) #18	RNF151 (ENSPNAG00000010442) #19	ENSPNAG00000010488 #20	msrb1b (ENSPNAG00000010501)	neurl2 (ENSPNAG00000010511)	MEIOB (ENSPNAG00000010569) #22	mlst8 (ENSPNAG00000010603)	bricd5 (ENSPNAG00000006122)	pgp (ENSPNAG00000005451)	zdhhc4 (ENSPNAG00000010640)	grid2ipb (ENSPNAG00000001436) #25	arhgap17a (ENSPNAG00000001455) #28	lcmt1 (ENSPNAG00000001463)	aqp8a.1 (ENSPNAG00000010931) #29	aqp8a.2 (ENSPNAG00000010954) ##30	hbae5 (ENSPNAG00000010963)	hbbe2 (ENSPNAG00000011240) #31	hbae4 (ENSPNAG00000011265) #33	ENSPNAG00000011269	ENSPNAG00000011365 #34	foxj1b (ENSPNAG00000001702) #35
Electric eel	MODERN SPECIES	94													noxo1b (ENSEEEG00000009103) #18	neurl2 (ENSEEEG00000009104)	msrb1b (ENSEEEG00000009105)	ENSEEEG00000009107 #22	mlst8 (ENSEEEG00000009112)	bricd5 (ENSEEEG00000009127)	pgp (ENSEEEG00000009129)	zdhhc4 (ENSEEEG00000009130)	ENSEEEG00000009131	grid2ipb (ENSEEEG00000009133) #25	arhgap17a (ENSEEEG00000009151) #28	lcmt1 (ENSEEEG00000009258)	aqp8a.1 (ENSEEEG00000009264) #29	aqp8a.2 (ENSEEEG00000009497) ##30	ENSEEEG00000009534	hbbe2 (ENSEEEG00000010084) #31	hbae4 (ENSEEEG00000010086) #33	ENSEEEG00000010162 #34	foxj1b (ENSEEEG00000010164) #35
Cyprinoidei	ANCESTRAL SPECIES	26	ENSGT00940000161824 #8	ENSGT00510000047886.a.a #9	ENSGT00940000153560.b.b.a.g #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00940000158812.j.a #18	ENSGT00530000063647.A.a #19	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000159304 #29	ENSGT00940000165638.b ##30	ENSGT00390000004394	ENSGT00940000165873	ENSGT00940000163663.B.b	ENSGT00730000110975	ENSGT00940000175733	ENSGT01030000236780
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	36	ENSGT00940000165760.c.b	ENSGT00940000161824.g #8	ENSGT00510000047886.a.a.b #9	ENSGT00940000153560.b.b.a.g.d #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a.b	ENSGT00390000017961.c #12	ENSGT00950000182951.A.a.a.c.a.a.e #13	ENSGT00940000162800.c #14	ENSGT00940000156940.b.d #15	ENSGT00390000009492.c #16	ENSGT00940000158812.j.a.f #18	ENSGT00940000164352.a.c #20	ENSGT00940000159689.d	ENSGT00510000047678.a.a.b.c	ENSGT00390000001723.g #22	ENSGT00940000160577.e	ENSGT00920000149163.f	ENSGT00940000157625.a.b.b #25	ENSGT00940000156201.a.a.b #28	ENSGT00940000156372.o	ENSGT00940000159304.f #29	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b.a	ENSGT00940000157809.j.a.e.b.a.a.b #31	ENSGT00940000157809.j.a.e.b.b.a.b #31	ENSGT00940000154590.c #33	ENSGT00940000156278.pe.b #34	ENSGT00940000164514.a.e #35	ENSGT00390000009925.a.k.b.a	ENSGT00390000008825.a.b.d #36
Cyprininae_a	ANCESTRAL SPECIES	37	ENSGT00940000165760.c.b	ENSGT00940000161824.g #8	ENSGT00510000047886.a.a.b #9	ENSGT00940000153560.b.b.a.g.d #10	ENSGT00950000183188.A.b #11	ENSGT01060000248591.a.a.a.a.a.b	ENSGT00390000017961.c #12	ENSGT00950000182951.A.a.a.c.a.a.e #13	ENSGT00940000162800.c #14	ENSGT00940000156940.b.d #15	ENSGT00390000009492.c #16	ENSGT00940000158812.j.a.f #18	ENSGT00940000164352.a.c #20	ENSGT00940000159689.d	ENSGT00510000047678.a.a.b.c	ENSGT00390000001723.g #22	ENSGT00390000014795.h	ENSGT00940000160577.e	ENSGT00920000149163.f	ENSGT00940000157625.a.b.b #25	ENSGT00940000156201.a.a.b #28	ENSGT00940000156372.o	ENSGT00940000159304.f #29	ENSGT00940000163288.a.b.b.b.a.b.a	ENSGT00940000157809.j.a.e.b.a.a.b #31	ENSGT00940000157809.j.a.e.b.b.a.b #31	ENSGT00940000154590.c #33	ENSGT00940000156278.pe.b #34	ENSGT00940000164514.a.e #35	ENSGT00390000009925.a.k.b.a	ENSGT00390000008825.a.b.d #36
Golden-line barbel	MODERN SPECIES	179	ENSSGRG00000032081 ##7	TECPR1 (ENSSGRG00000032148) #9	bhlha15 (ENSSGRG00000032302) #8	baiap2l1a (ENSSGRG00000032307) #10	tmem130 (ENSSGRG00000032343) #11	nptx2b (ENSSGRG00000032347)	trrap (ENSSGRG00000032419) #12	FAM20C (ENSSGRG00000034780) #13	foxl3 (ENSSGRG00000034827) #14	tom1l2 (ENSSGRG00000034828) #15	atpaf2 (ENSSGRG00000034840) #16	noxo1b (ENSSGRG00000034927) #18	ENSSGRG00000034934 #20	neurl2 (ENSSGRG00000034936)	msrb1b (ENSSGRG00000034937)	ENSSGRG00000034940 #22	MLST8 (ENSSGRG00000034942)	pgp (ENSSGRG00000034943)	zdhhc4 (ENSSGRG00000034945)	grid2ipb (ENSSGRG00000034946) #25	arhgap17a (ENSSGRG00000034956) #28	lcmt1 (ENSSGRG00000035494)	aqp8a.1 (ENSSGRG00000035496) #29	aqp8a.2 (ENSSGRG00000035498) ##30	hbae5 (ENSSGRG00000035501)	ENSSGRG00000035542	hbbe3 (ENSSGRG00000035544) #31	hbae4 (ENSSGRG00000035545) #33	ENSSGRG00000035554 #34
Common carp reference	MODERN SPECIES	44	bhlha15 (ENSCCRG00000065396) #8	ENSCCRG00000046025 #9	baiap2l1a (ENSCCRG00000078973) #10	tmem130 (ENSCCRG00000048598) #11	nptx2b (ENSCCRG00000048602)	trrap (ENSCCRG00000048645) #12	ENSCCRG00000066826 #13	foxl3 (ENSCCRG00000060007) #14	tom1l2 (ENSCCRG00000074603) #15	atpaf2 (ENSCCRG00000012945) #16	noxo1b (ENSCCRG00000045535) #18	ENSCCRG00000073528 #19	ENSCCRG00000019493 #20	neurl2 (ENSCCRG00000019502)	msrb1b (ENSCCRG00000063380)	ENSCCRG00000019514 #22	ENSCCRG00000033064	mlst8 (ENSCCRG00000075392)	bricd5 (ENSCCRG00000061313)	zdhhc4 (ENSCCRG00000054917)	grid2ipb (ENSCCRG00000045065) #25	arhgap17a (ENSCCRG00000019362) #28	ENSCCRG00000017309	aqp8a.1 (ENSCCRG00000074292) #29	ENSCCRG00000047883	hbae5 (ENSCCRG00000047881)	hbbe2 (ENSCCRG00000068895) #31	hbbe3 (ENSCCRG00000047878) #31	hbae4 (ENSCCRG00000062969) #33	ENSCCRG00000054012 #34	foxj1b (ENSCCRG00000047539) #35
Cyprininae	ANCESTRAL SPECIES	129	ENSGT00940000161824.h #8	ENSGT00510000047886.a.a.a #9	ENSGT00940000153560.b.b.a.g.c #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a.a	ENSGT00390000017961.d #12	ENSGT00950000182951.A.a.a.c.a.a.f #13	ENSGT00940000162800.d #14	ENSGT00940000156940.b.c #15	ENSGT00390000009492.d #16	ENSGT00940000158812.j.a.e #18	ENSGT00530000063647.A.a #19	ENSGT00940000164352.a.d #20	ENSGT00940000159689.c.a	ENSGT00510000047678.a.a.b.d	ENSGT00390000001723.h #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577.f	ENSGT00920000149163.e	ENSGT00940000157625.a.b.a #25	ENSGT00940000156201.a.a.a #28	ENSGT00940000156372.p	ENSGT00940000159304.e #29	ENSGT00940000163288.a.b.b.b.a.b.b	ENSGT00940000157809.j.a.e.b.a.a.a #31	ENSGT00940000157809.j.a.e.b.b.a.a #31	ENSGT00940000156278.pe.a #34	ENSGT00940000164514.a.f #35	ENSGT00390000009925.a.k.b.b	ENSGT00390000008825.b.b.d.a ##36
Goldfish	MODERN SPECIES	3	ENSCARG00000002544	bhlha15 (ENSCARG00000002542) #8	TECPR1 (ENSCARG00000002492) #9	baiap2l1a (ENSCARG00000002462) #10	nptx2b (ENSCARG00000002452)	trrap (ENSCARG00000002352) #12	ENSCARG00000002297	FAM20C (ENSCARG00000002252) #13	foxl3 (ENSCARG00000002224) #14	tom1l2 (ENSCARG00000002047) #15	noxo1b (ENSCARG00000001976) #18	ENSCARG00000001965 #19	ENSCARG00000010669 #20	neurl2 (ENSCARG00000010661)	msrb1b (ENSCARG00000010651)	MEIOB (ENSCARG00000010601) #22	bricd5 (ENSCARG00000010585)	pgp (ENSCARG00000010577)	grid2ipb (ENSCARG00000010421) #25	arhgap17a (ENSCARG00000010081) #28	lcmt1 (ENSCARG00000010022)	aqp8a.1 (ENSCARG00000010007) #29	ENSCARG00000009999	hbae5 (ENSCARG00000009995)	hbbe2 (ENSCARG00000009989) #31	hbbe3 (ENSCARG00000009985) #31	ENSCARG00000009981	ENSCARG00000009714 #34	foxj1b (ENSCARG00000009691) #35	mgrn1a (ENSCARG00000009670)	ubald1a (ENSCARG00000009657) ##36
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00940000165760.c.a	ENSGT00940000161824.h #8	ENSGT00510000047886.a.a.a #9	ENSGT00940000153560.b.b.a.g.c #10	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a.a	ENSGT00390000017961.d #12	ENSGT00950000182951.A.a.a.c.a.a.f #13	ENSGT00940000162800.d #14	ENSGT00940000156940.b.c #15	ENSGT00390000009492.d #16	ENSGT00940000158812.j.a.e #18	ENSGT00530000063647.A.a #19	ENSGT00940000164352.a.d #20	ENSGT00510000047678.a.a.b.d	ENSGT00390000001723.h #22	ENSGT00390000014795.g.a	ENSGT00930000150969.B.b	ENSGT00940000160577.f	ENSGT00920000149163.e	ENSGT00940000157625.a.b.a #25	ENSGT00940000156201.a.a.a #28	ENSGT00940000156372.p	ENSGT00940000159304.e #29	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b.b	ENSGT00940000157809.j.a.e.b.a.a.a #31	ENSGT00940000157809.j.a.e.b.b.a.a #31	ENSGT00940000157809.j.a.e.b.a.b #31	ENSGT00940000154590.d #33	ENSGT00940000156278.pe.a #34
Common carp reference	MODERN SPECIES	25	pvalb3 (ENSCCRG00000020651) ##7	pvalb2 (ENSCCRG00000008312) #7	ENSCCRG00000020627	bhlha15 (ENSCCRG00000078238) #8	ENSCCRG00000013843 #9	baiap2l1a (ENSCCRG00000047978) #10	nptx2b (ENSCCRG00000055764)	trrap (ENSCCRG00000013389) #12	ENSCCRG00000056820 #13	foxl3 (ENSCCRG00000029184) #14	tom1l2 (ENSCCRG00000045596) #15	atpaf2 (ENSCCRG00000014390) #16	noxo1b (ENSCCRG00000073755) #18	ENSCCRG00000045524 #20	ENSCCRG00000014399 #19	ENSCCRG00000019530 #22	mlst8 (ENSCCRG00000019540)	bricd5 (ENSCCRG00000056246)	pgp (ENSCCRG00000081685)	zdhhc4 (ENSCCRG00000076926)	grid2ipb (ENSCCRG00000019630) #25	arhgap17a (ENSCCRG00000015365) #28	lcmt1 (ENSCCRG00000022341)	aqp8a.1 (ENSCCRG00000022389) #29	aqp8a.2 (ENSCCRG00000054783) ##30	hbae5 (ENSCCRG00000048228)	hbbe2 (ENSCCRG00000048225) #31	hbbe3 (ENSCCRG00000026395) #31	hbae4 (ENSCCRG00000076628) #33	hbae4 (ENSCCRG00000048220) #33	ENSCCRG00000047557 #34
Golden-line barbel	MODERN SPECIES	56	ENSSGRG00000008742	bhlha15 (ENSSGRG00000008740) #8	TECPR1 (ENSSGRG00000008477) #9	baiap2l1a (ENSSGRG00000008419) #10	ENSSGRG00000008413	nptx2b (ENSSGRG00000008368)	trrap (ENSSGRG00000006698) #12	ENSSGRG00000006512 #13	foxl3 (ENSSGRG00000006511) #14	tom1l2 (ENSSGRG00000006502) #15	atpaf2 (ENSSGRG00000006491) #16	noxo1b (ENSSGRG00000006488) #18	ENSSGRG00000006487 #19	ENSSGRG00000006485 #20	msrb1b (ENSSGRG00000006484)	ENSSGRG00000006483 #22	mlst8 (ENSSGRG00000006376)	bricd5 (ENSSGRG00000006365)	pgp (ENSSGRG00000006362)	zdhhc4 (ENSSGRG00000006357)	grid2ipb (ENSSGRG00000006351) #25	arhgap17a (ENSSGRG00000003769) #28	lcmt1 (ENSSGRG00000003639)	aqp8a.1 (ENSSGRG00000003579) #29	aqp8a.2 (ENSSGRG00000003576) ##30	hbbe2 (ENSSGRG00000003468) #31	hbae4 (ENSSGRG00000003456) #33	ENSSGRG00000001515 #34	foxj1b (ENSSGRG00000001419) #35	mgrn1a (ENSSGRG00000000786)	ubald1a (ENSSGRG00000000782) ##36
Zebrafish	MODERN SPECIES	3	pvalb2 (ENSDARG00000002768) #7	bhlha15 (ENSDARG00000045166) #8	ENSDARG00000062515 #9	baiap2l1a (ENSDARG00000029305) #10	tmem130 (ENSDARG00000103789) #11	nptx2b (ENSDARG00000045164)	trrap (ENSDARG00000100623) #12	FAM20C (ENSDARG00000090338) #13	foxl3 (ENSDARG00000086055) #14	tom1l2 (ENSDARG00000009217) #15	atpaf2 (ENSDARG00000056270) #16	noxo1b (ENSDARG00000056374) #18	ENSDARG00000075046 #19	ENSDARG00000078132 #20	neurl2 (ENSDARG00000062446)	MEIOB (ENSDARG00000062442) #22	msrb1b (ENSDARG00000045160)	mlst8 (ENSDARG00000003167)	bricd5 (ENSDARG00000056247)	ENSDARG00000114422	pgp (ENSDARG00000029695)	zdhhc4 (ENSDARG00000045159)	grid2ipb (ENSDARG00000095603) #25	ENSDARG00000045157	rgs9b (ENSDARG00000045156)	mrtfab (ENSDARG00000076229) ##37	ENSDARG00000088204	desi1b (ENSDARG00000089529)	xrcc6 (ENSDARG00000071551)	josd1 (ENSDARG00000071548)	CBX7 (ENSDARG00000087181)
Clupeiformes	ANCESTRAL SPECIES	5	ENSGT00390000000713	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961 #12	ENSGT00950000182951.A.a.a.c.a.a #13	ENSGT00940000162800 #14	ENSGT00940000156940.b #15	ENSGT00390000009492 #16	ENSGT00500000044930.e.a #17	ENSGT00940000158812.j.a #18	ENSGT00940000164352.a #20	ENSGT00940000159689	ENSGT00510000047678.a.a.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b #25	ENSGT00940000156201.a.a #28	ENSGT00940000156372	ENSGT00940000165638.b ##30	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b #31	ENSGT01000000215398 #32	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000154590 #33	ENSGT00950000182979.a.b.b.b.b.i.b #37	ENSGT00390000004394
Atlantic herring	MODERN SPECIES	15	tmem130 (ENSCHAG00000021985) #11	ENSCHAG00000021994	nptx2b (ENSCHAG00000022009)	trrap (ENSCHAG00000022036) #12	FAM20C (ENSCHAG00000023040) #13	foxl3 (ENSCHAG00000023206) #14	tom1l2 (ENSCHAG00000023210) #15	atpaf2 (ENSCHAG00000023232) #16	GID4 (ENSCHAG00000023244) #17	noxo1b (ENSCHAG00000023267) #18	noxo1b (ENSCHAG00000023282) #18	RNF151 (ENSCHAG00000023295) #19	ENSCHAG00000023302 #20	neurl2 (ENSCHAG00000023336)	msrb1b (ENSCHAG00000023349)	ENSCHAG00000023356 #22	mlst8 (ENSCHAG00000023370)	bricd5 (ENSCHAG00000023403)	pgp (ENSCHAG00000023408)	zdhhc4 (ENSCHAG00000023418)	grid2ipb (ENSCHAG00000023427) #25	arhgap17a (ENSCHAG00000023465) #28	lcmt1 (ENSCHAG00000023657)	aqp8a.1 (ENSCHAG00000023729) #29	ENSCHAG00000023741 ##30	hbae5 (ENSCHAG00000023742)	hbbe3 (ENSCHAG00000023745) #31	ENSCHAG00000023748 #32	ENSCHAG00000023751	hbae4 (ENSCHAG00000023754) #33	ENSCHAG00000002681 #34