Rodentia	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Rodentia_B	ANCESTRAL SPECIES	15	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Myomorpha	ANCESTRAL SPECIES	17	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Muroidea	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1760	Tsc2 (ENSNGAG00000021283) #7	Nthl1 (ENSNGAG00000023847) #8	Nherf2 (ENSNGAG00000016521) #9	Npw (ENSNGAG00000022441) #10	Zfp598 (ENSNGAG00000021072) #11	Syngr3 (ENSNGAG00000004429) #12	Gfer (ENSNGAG00000024200) #13	Noxo1 (ENSNGAG00000023406) #14	Rnf151 (ENSNGAG00000003547) #15	Tbl3 (ENSNGAG00000002428) #16	ENSNGAG00000013739 #17	Ndufb10 (ENSNGAG00000015798) #18	Rpl3l (ENSNGAG00000023163) #19	Msrb1 (ENSNGAG00000015847) #20	Hs3st6 (ENSNGAG00000011421) #21	Meiob (ENSNGAG00000006985) #22	Fahd1 (ENSNGAG00000013637) #23	Hagh (ENSNGAG00000024100) #24	Igfals (ENSNGAG00000014838) #25	Nubp2 (ENSNGAG00000001165) #26	Spsb3 (ENSNGAG00000023785) #27	Mrps34 (ENSNGAG00000023629) #28	Nme3 (ENSNGAG00000022562) #29	Mapk8ip3 (ENSNGAG00000021573) #30	Jpt2 (ENSNGAG00000021166) #31	Cramp1 (ENSNGAG00000012239) #32	ENSNGAG00000019576 #33	Tmem204 (ENSNGAG00000016981) #34	ENSNGAG00000010476 #35	Telo2 (ENSNGAG00000020065) #36	Clcn7 (ENSNGAG00000022952) #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Cricetidae	ANCESTRAL SPECIES		ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00390000015528 #34	ENSGT00940000153417.A #33	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Chinese hamster chok1gshd	MODERN SPECIES	229	Tsc2 (ENSCGRG00001012289) #7	NTHL1 (ENSCGRG00001012482) #8	Nherf2 (ENSCGRG00001015951) #9	Npw (ENSCGRG00001017678) #10	Zfp598 (ENSCGRG00001021070) #11	Syngr3 (ENSCGRG00001014491) #12	Gfer (ENSCGRG00001023595) #13	Noxo1 (ENSCGRG00001020009) #14	Tbl3 (ENSCGRG00001021817) #16	Rnf151 (ENSCGRG00001023396) #15	Rps2 (ENSCGRG00001023670) ##17	Ndufb10 (ENSCGRG00001013121) #18	Rpl3l (ENSCGRG00001016900) #19	Msrb1 (ENSCGRG00001023043) #20	Hs3st6 (ENSCGRG00001024254) #21	Meiob (ENSCGRG00001024640) #22	Fahd1 (ENSCGRG00001013933) #23	Hagh (ENSCGRG00001014522) #24	Igfals (ENSCGRG00001023230) #25	Nubp2 (ENSCGRG00001024233) #26	Spsb3 (ENSCGRG00001017880) #27	Eme2 (ENSCGRG00001014405)	Mrps34 (ENSCGRG00001023318) #28	Nme3 (ENSCGRG00001024438) #29	Mapk8ip3 (ENSCGRG00001009625) #30	Jpt2 (ENSCGRG00001023398) #31	Cramp1 (ENSCGRG00001024738) #32	Ift140 (ENSCGRG00001020155) #33	Tmem204 (ENSCGRG00001023413) #34	Telo2 (ENSCGRG00001024725) #36	Ptx4 (ENSCGRG00001018707)
Golden Hamster	MODERN SPECIES	733	Pkd1 (ENSMAUG00000014808)	Tsc2 (ENSMAUG00000007571) #7	Nthl1 (ENSMAUG00000011440) #8	Nherf2 (ENSMAUG00000005047) #9	Npw (ENSMAUG00000009076) #10	Zfp598 (ENSMAUG00000020596) #11	Syngr3 (ENSMAUG00000004857) #12	Gfer (ENSMAUG00000001778) #13	Noxo1 (ENSMAUG00000019212) #14	Tbl3 (ENSMAUG00000008718) #16	Rnf151 (ENSMAUG00000004941) #15	Ndufb10 (ENSMAUG00000007967) #18	Rpl3l (ENSMAUG00000008094) #19	Msrb1 (ENSMAUG00000019299) #20	Hs3st6 (ENSMAUG00000018680) #21	Meiob (ENSMAUG00000021803) #22	Fahd1 (ENSMAUG00000008227) #23	Hagh (ENSMAUG00000012144) #24	Igfals (ENSMAUG00000021813) #25	Nubp2 (ENSMAUG00000006099) #26	Spsb3 (ENSMAUG00000011949) #27	Eme2 (ENSMAUG00000008967)	Mrps34 (ENSMAUG00000015906) #28	Nme3 (ENSMAUG00000008485) #29	Mapk8ip3 (ENSMAUG00000010859) #30	ENSMAUG00000007417	Jpt2 (ENSMAUG00000005592) #31	Cramp1 (ENSMAUG00000019364) #32	ENSMAUG00000022190 #33	Tmem204 (ENSMAUG00000008010) #34	ENSMAUG00000022008 #33
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00390000015528 #34	ENSGT00940000153417.A #33	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	21	Gabra6 (ENSPEMG00000000050)	ENSPEMG00000027790	Gabra1 (ENSPEMG00000026750)	Gabrg2 (ENSPEMG00000016073)	ENSPEMG00000027245	Nudcd2 (ENSPEMG00000030830)	Hmmr (ENSPEMG00000011199)	Mat2b (ENSPEMG00000000715)	ENSPEMG00000025585	Tenm2 (ENSPEMG00000018309)	Wwc1 (ENSPEMG00000011501)	Rars (ENSPEMG00000020288)	Fbll1 (ENSPEMG00000020325)	Pank3 (ENSPEMG00000024678)	Slit3 (ENSPEMG00000018195)	ENSPEMG00000025128 #22	ENSPEMG00000013732 #23	Hagh (ENSPEMG00000010566) #24	Igfals (ENSPEMG00000008578) #25	Nubp2 (ENSPEMG00000010441) #26	Spsb3 (ENSPEMG00000016895) #27	Eme2 (ENSPEMG00000001093)	Mrps34 (ENSPEMG00000005957) #28	Nme3 (ENSPEMG00000018639) #29	Mapk8ip3 (ENSPEMG00000011936) #30	Jpt2 (ENSPEMG00000017546) #31	Cramp1 (ENSPEMG00000007023) #32	Tmem204 (ENSPEMG00000027984) #34	Ift140 (ENSPEMG00000014706) #33	Telo2 (ENSPEMG00000017007) #36	Ptx4 (ENSPEMG00000012407)
Northern American deer mouse	MODERN SPECIES	21	Tsc2 (ENSPEMG00000017951) #7	Nthl1 (ENSPEMG00000015321) #8	Nherf2 (ENSPEMG00000008746) #9	Npw (ENSPEMG00000013065) #10	Zfp598 (ENSPEMG00000013518) #11	Syngr3 (ENSPEMG00000025114) #12	Gfer (ENSPEMG00000024300) #13	Noxo1 (ENSPEMG00000018859) #14	Tbl3 (ENSPEMG00000009768) #16	Rnf151 (ENSPEMG00000010081) #15	ENSPEMG00000012503 ##17	Ndufb10 (ENSPEMG00000018512) #18	Rpl3l (ENSPEMG00000010667) #19	Msrb1 (ENSPEMG00000018902) #20	Hs3st6 (ENSPEMG00000016998) #21	ENSPEMG00000025436 #22	Spdl1 (ENSPEMG00000009912)	Dock2 (ENSPEMG00000015007)	Insyn2b (ENSPEMG00000015788)	Foxi1 (ENSPEMG00000015123)	4930469K13Rik (ENSPEMG00000029094)	Lcp2 (ENSPEMG00000011935)	Kcnmb1 (ENSPEMG00000025688)	Kcnip1 (ENSPEMG00000007681)	Gabrp (ENSPEMG00000008255)	Ranbp17 (ENSPEMG00000013086)	Tlx3 (ENSPEMG00000009002)	ENSPEMG00000010032	Fgf18 (ENSPEMG00000027707)	ENSPEMG00000005862	Smim23 (ENSPEMG00000009648)
Prairie vole	MODERN SPECIES	15	Tsc2 (ENSMOCG00000014270) #7	Nthl1 (ENSMOCG00000022584) #8	Nherf2 (ENSMOCG00000022945) #9	Npw (ENSMOCG00000007567) #10	Zfp598 (ENSMOCG00000015693) #11	Syngr3 (ENSMOCG00000010060) #12	Gfer (ENSMOCG00000003379) #13	Noxo1 (ENSMOCG00000022179) #14	Tbl3 (ENSMOCG00000019634) #16	Rnf151 (ENSMOCG00000021816) #15	ENSMOCG00000014200 ##17	Ndufb10 (ENSMOCG00000011750) #18	Rpl3l (ENSMOCG00000020012) #19	Msrb1 (ENSMOCG00000013864) #20	Hs3st6 (ENSMOCG00000022877) #21	Meiob (ENSMOCG00000020796) #22	Fahd1 (ENSMOCG00000001032) #23	Hagh (ENSMOCG00000020674) #24	Igfals (ENSMOCG00000013702) #25	Nubp2 (ENSMOCG00000003091) #26	Spsb3 (ENSMOCG00000000734) #27	Eme2 (ENSMOCG00000019621)	Mrps34 (ENSMOCG00000004274) #28	ENSMOCG00000003271 #29	Mapk8ip3 (ENSMOCG00000018334) #30	Jpt2 (ENSMOCG00000022903) #31	Cramp1 (ENSMOCG00000015569) #32	ENSMOCG00000011625 #33	Tmem204 (ENSMOCG00000010004) #34	ENSMOCG00000014894 #33	Telo2 (ENSMOCG00000022271) #36
Murinae	ANCESTRAL SPECIES	7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Mus	ANCESTRAL SPECIES	21	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Mus_A	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652.r #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652.r #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Mus_C	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652.q.b #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
spretus	MODERN SPECIES	8	Caskin1 (MGP_SPRETEiJ_G0022099)	Traf7 (MGP_SPRETEiJ_G0022100)	Rab26 (MGP_SPRETEiJ_G0022101)	Pkd1 (MGP_SPRETEiJ_G0022102)	Nthl1 (MGP_SPRETEiJ_G0022103) #8	Nherf2 (MGP_SPRETEiJ_G0022104) #9	MGP_SPRETEiJ_G0022105 #10	Zfp598 (MGP_SPRETEiJ_G0022106) #11	Syngr3 (MGP_SPRETEiJ_G0022107) #12	Gfer (MGP_SPRETEiJ_G0022108) #13	Noxo1 (MGP_SPRETEiJ_G0022109) #14	Tbl3 (MGP_SPRETEiJ_G0022110) #16	Rnf151 (MGP_SPRETEiJ_G0022111) #15	Msrb1 (MGP_SPRETEiJ_G0022112) #20	Hs3st6 (MGP_SPRETEiJ_G0022113) #21	Meiob (MGP_SPRETEiJ_G0022114) #22	Hagh (MGP_SPRETEiJ_G0022115) #24	Fahd1 (MGP_SPRETEiJ_G0022116) #23	MGP_SPRETEiJ_G0022117 #19	Ndufb10 (MGP_SPRETEiJ_G0022118) #18	MGP_SPRETEiJ_G0022119	Igfals (MGP_SPRETEiJ_G0022120) #25	Nubp2 (MGP_SPRETEiJ_G0022121) #26	Spsb3 (MGP_SPRETEiJ_G0022122) #27	MGP_SPRETEiJ_G0022123	Mapk8ip3 (MGP_SPRETEiJ_G0022124) #30	Mrps34 (MGP_SPRETEiJ_G0022125) #28	Nme3 (MGP_SPRETEiJ_G0022126) #29	Jpt2 (MGP_SPRETEiJ_G0022127) #31	Cramp1 (MGP_SPRETEiJ_G0022128) #32	Ift140 (MGP_SPRETEiJ_G0022129) #33
Steppe mouse	MODERN SPECIES	3126	Tsc2 (ENSMSIG00000006743) #7	Nthl1 (ENSMSIG00000007949) #8	Nherf2 (ENSMSIG00000007960) #9	Npw (ENSMSIG00000007993) #10	Zfp598 (ENSMSIG00000008003) #11	ENSMSIG00000008029 #12	ENSMSIG00000008048 #13	Noxo1 (ENSMSIG00000008056) #14	Tbl3 (ENSMSIG00000008080) #16	Rnf151 (ENSMSIG00000008128) #15	Rps2 (ENSMSIG00000008161) ##17	Ndufb10 (ENSMSIG00000008241) #18	Rpl3l (ENSMSIG00000008247) #19	Msrb1 (ENSMSIG00000008280) #20	Hs3st6 (ENSMSIG00000008324) #21	Meiob (ENSMSIG00000008345) #22	Fahd1 (ENSMSIG00000008407) #23	Hagh (ENSMSIG00000008421) #24	Igfals (ENSMSIG00000008467) #25	Nubp2 (ENSMSIG00000008482) #26	ENSMSIG00000008500 #27	Eme2 (ENSMSIG00000008685)	Mrps34 (ENSMSIG00000008733) #28	Nme3 (ENSMSIG00000008746) #29	Mapk8ip3 (ENSMSIG00000008777) #30	ENSMSIG00000010638 #31	Cramp1 (ENSMSIG00000010664) #32	Ift140 (ENSMSIG00000010724) #33	Tmem204 (ENSMSIG00000010873) #34	Telo2 (ENSMSIG00000010889) #36	Ptx4 (ENSMSIG00000010971)
Mouse	MODERN SPECIES	8	Tsc2 (ENSMUSG00000002496) #7	Nthl1 (ENSMUSG00000041429) #8	Nherf2 (ENSMUSG00000002504) #9	Npw (ENSMUSG00000071230) #10	Zfp598 (ENSMUSG00000041130) #11	Syngr3 (ENSMUSG00000007021) #12	Gfer (ENSMUSG00000040888) #13	Noxo1 (ENSMUSG00000019320) #14	Tbl3 (ENSMUSG00000040688) #16	Rnf151 (ENSMUSG00000008482) #15	Rps2 (ENSMUSG00000044533) ##17	Ndufb10 (ENSMUSG00000040048) #18	Rpl3l (ENSMUSG00000002500) #19	Msrb1 (ENSMUSG00000075705) #20	Hs3st6 (ENSMUSG00000039628) #21	Meiob (ENSMUSG00000024155) #22	Hagh (ENSMUSG00000024158) #24	Fahd1 (ENSMUSG00000045316) #23	Igfals (ENSMUSG00000046070) #25	Nubp2 (ENSMUSG00000039183) #26	Spsb3 (ENSMUSG00000024160) #27	Eme2 (ENSMUSG00000073436)	Mapk8ip3 (ENSMUSG00000024163) #30	Mrps34 (ENSMUSG00000038880) #28	Nme3 (ENSMUSG00000073435) #29	Jpt2 (ENSMUSG00000024165) #31	Cramp1 (ENSMUSG00000038002) #32	Ift140 (ENSMUSG00000024169) #33	Tmem204 (ENSMUSG00000024168) #34	Telo2 (ENSMUSG00000024170) #36	Ptx4 (ENSMUSG00000044172)
Ryukyu mouse	MODERN SPECIES	8	Rab26 (MGP_CAROLIEiJ_G0021191)	Pkd1 (MGP_CAROLIEiJ_G0021192)	Nthl1 (MGP_CAROLIEiJ_G0021193) #8	Nherf2 (MGP_CAROLIEiJ_G0021194) #9	MGP_CAROLIEiJ_G0021195 #10	Syngr3 (MGP_CAROLIEiJ_G0021196) #12	Gfer (MGP_CAROLIEiJ_G0021197) #13	Noxo1 (MGP_CAROLIEiJ_G0021198) #14	Tbl3 (MGP_CAROLIEiJ_G0021199) #16	Rnf151 (MGP_CAROLIEiJ_G0021200) #15	MGP_CAROLIEiJ_G0021201 ##17	Ndufb10 (MGP_CAROLIEiJ_G0021202) #18	Rpl3l (MGP_CAROLIEiJ_G0021203) #19	Msrb1 (MGP_CAROLIEiJ_G0021204) #20	Hs3st6 (MGP_CAROLIEiJ_G0021205) #21	Meiob (MGP_CAROLIEiJ_G0021206) #22	Hagh (MGP_CAROLIEiJ_G0021207) #24	Fahd1 (MGP_CAROLIEiJ_G0021208) #23	Igfals (MGP_CAROLIEiJ_G0021209) #25	Nubp2 (MGP_CAROLIEiJ_G0021210) #26	MGP_CAROLIEiJ_G0021211 #27	Eme2 (MGP_CAROLIEiJ_G0021212)	Mapk8ip3 (MGP_CAROLIEiJ_G0021213) #30	Mrps34 (MGP_CAROLIEiJ_G0021214) #28	Nme3 (MGP_CAROLIEiJ_G0021215) #29	MGP_CAROLIEiJ_G0021216 #31	Cramp1 (MGP_CAROLIEiJ_G0021217) #32	Ift140 (MGP_CAROLIEiJ_G0021218) #33	Tmem204 (MGP_CAROLIEiJ_G0021219) #34	Telo2 (MGP_CAROLIEiJ_G0021220) #36	Ptx4 (MGP_CAROLIEiJ_G0021221)
Shrew mouse	MODERN SPECIES	13	Pkd1 (MGP_PahariEiJ_G0023508)	Nthl1 (MGP_PahariEiJ_G0023509) #8	Nherf2 (MGP_PahariEiJ_G0023510) #9	Npw (MGP_PahariEiJ_G0023511) #10	Zfp598 (MGP_PahariEiJ_G0023512) #11	Syngr3 (MGP_PahariEiJ_G0023513) #12	Gfer (MGP_PahariEiJ_G0023514) #13	Noxo1 (MGP_PahariEiJ_G0023515) #14	Tbl3 (MGP_PahariEiJ_G0023516) #16	Rnf151 (MGP_PahariEiJ_G0023517) #15	MGP_PahariEiJ_G0023518 ##17	Ndufb10 (MGP_PahariEiJ_G0023519) #18	Rpl3l (MGP_PahariEiJ_G0023520) #19	Msrb1 (MGP_PahariEiJ_G0023521) #20	Hs3st6 (MGP_PahariEiJ_G0023522) #21	Meiob (MGP_PahariEiJ_G0023523) #22	Hagh (MGP_PahariEiJ_G0023524) #24	Fahd1 (MGP_PahariEiJ_G0023525) #23	Igfals (MGP_PahariEiJ_G0023526) #25	Nubp2 (MGP_PahariEiJ_G0023527) #26	MGP_PahariEiJ_G0023528 #27	Eme2 (MGP_PahariEiJ_G0023529)	Mapk8ip3 (MGP_PahariEiJ_G0023530) #30	Mrps34 (MGP_PahariEiJ_G0023531) #28	Nme3 (MGP_PahariEiJ_G0023532) #29	MGP_PahariEiJ_G0023533 #31	MGP_PahariEiJ_G0023534 #31	Cramp1 (MGP_PahariEiJ_G0023535) #32	Ift140 (MGP_PahariEiJ_G0023536) #33	Tmem204 (MGP_PahariEiJ_G0023537) #34	Telo2 (MGP_PahariEiJ_G0023538) #36
Rat	MODERN SPECIES	1	Tsc2 (ENSRNOG00000011375) #7	Nthl1 (ENSRNOG00000012213) #8	Nherf2 (ENSRNOG00000002997) #9	Npw (ENSRNOG00000012390) #10	Zfp598 (ENSRNOG00000012434) #11	Syngr3 (ENSRNOG00000012620) #12	Gfer (ENSRNOG00000013370) #13	Noxo1 (ENSRNOG00000025117) #14	Tbl3 (ENSRNOG00000013429) #16	Rnf151 (ENSRNOG00000014127) #15	Rps2 (ENSRNOG00000014179) ##17	Ndufb10 (ENSRNOG00000014568) #18	Rpl3l (ENSRNOG00000014641) #19	Msrb1 (ENSRNOG00000055314) #20	Hs3st6 (ENSRNOG00000014672) #21	Meiob (ENSRNOG00000014711) #22	Fahd1 (ENSRNOG00000014727) #23	Hagh (ENSRNOG00000014743) #24	Igfals (ENSRNOG00000015061) #25	Nubp2 (ENSRNOG00000015090) #26	Spsb3 (ENSRNOG00000015300) #27	Eme2 (ENSRNOG00000024867)	Mrps34 (ENSRNOG00000015479) #28	Nme3 (ENSRNOG00000015749) #29	Mapk8ip3 (ENSRNOG00000033568) #30	Jpt2 (ENSRNOG00000024661) #31	Cramp1 (ENSRNOG00000024635) #32	Ift140 (ENSRNOG00000016545) #33	Tmem204 (ENSRNOG00000016494) #34	Telo2 (ENSRNOG00000016774) #36	Ptx4 (ENSRNOG00000060934)
Lesser Egyptian jerboa	MODERN SPECIES	47	Tsc2 (ENSJJAG00000010773) #7	Nthl1 (ENSJJAG00000010038) #8	Nherf2 (ENSJJAG00000022481) #9	ENSJJAG00000004536	Zfp598 (ENSJJAG00000012668) #11	Syngr3 (ENSJJAG00000022558) #12	Gfer (ENSJJAG00000002661) #13	Noxo1 (ENSJJAG00000019469) #14	Tbl3 (ENSJJAG00000004124) #16	Rnf151 (ENSJJAG00000006822) #15	ENSJJAG00000011197 ##17	ENSJJAG00000011730 #18	Rpl3l (ENSJJAG00000011979) #19	Msrb1 (ENSJJAG00000023868) #20	Hs3st6 (ENSJJAG00000018711) #21	Meiob (ENSJJAG00000020956) #22	Fahd1 (ENSJJAG00000012552) #23	ENSJJAG00000018924 #24	Igfals (ENSJJAG00000014391) #25	Nubp2 (ENSJJAG00000010092) #26	Spsb3 (ENSJJAG00000005206) #27	Eme2 (ENSJJAG00000022042)	Mrps34 (ENSJJAG00000016768) #28	Nme3 (ENSJJAG00000014938) #29	Mapk8ip3 (ENSJJAG00000012043) #30	ENSJJAG00000022922 #31	Cramp1 (ENSJJAG00000019556) #32	Tmem204 (ENSJJAG00000016676) #34	Ift140 (ENSJJAG00000015483) #33	Telo2 (ENSJJAG00000019914) #36	Ptx4 (ENSJJAG00000023455)
Kangaroo rat	MODERN SPECIES	333	Pkd1 (ENSDORG00000013708)	Tsc2 (ENSDORG00000013702) #7	Nthl1 (ENSDORG00000013701) #8	Nherf2 (ENSDORG00000013700) #9	Zfp598 (ENSDORG00000007907) #11	Syngr3 (ENSDORG00000024759) #12	Gfer (ENSDORG00000025553) #13	Noxo1 (ENSDORG00000007379) #14	Tbl3 (ENSDORG00000007377) #16	ENSDORG00000007376 #15	ENSDORG00000007375 ##17	Ndufb10 (ENSDORG00000007374) #18	Rpl3l (ENSDORG00000007373) #19	Msrb1 (ENSDORG00000025189) #20	Hs3st6 (ENSDORG00000023206) #21	Meiob (ENSDORG00000012742) #22	Hagh (ENSDORG00000009673) #24	Igfals (ENSDORG00000009672) #25	Nubp2 (ENSDORG00000009670) #26	Spsb3 (ENSDORG00000009668) #27	ENSDORG00000027160	ENSDORG00000009659 #30	ENSDORG00000026402 #30	Jpt2 (ENSDORG00000025742) #31	Cramp1 (ENSDORG00000013715) #32	Ift140 (ENSDORG00000004166) #33	Tmem204 (ENSDORG00000028876) #34	Telo2 (ENSDORG00000004164) #36	Ptx4 (ENSDORG00000000363)	Clcn7 (ENSDORG00000009312) #37	Ccdc154 (ENSDORG00000009310)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348.m #18	ENSGT00940000153095.g.b.a.b.h ##17	ENSGT00390000006348.n #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.b.h ##17	ENSGT00390000006348.n #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.b.h ##17	ENSGT00390000006348.n #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Long-tailed chinchilla	MODERN SPECIES	149	NTHL1 (ENSCLAG00000011819) #8	NHERF2 (ENSCLAG00000013193) #9	NPW (ENSCLAG00000014103) #10	ZNF598 (ENSCLAG00000012014) #11	SYNGR3 (ENSCLAG00000014459) #12	GFER (ENSCLAG00000013056) #13	NOXO1 (ENSCLAG00000012905) #14	TBL3 (ENSCLAG00000013342) #16	RNF151 (ENSCLAG00000014779) #15	ENSCLAG00000016080 ##17	NDUFB10 (ENSCLAG00000013856) #18	ENSCLAG00000016182	RPL3L (ENSCLAG00000015614) #19	MSRB1 (ENSCLAG00000016348) #20	HS3ST6 (ENSCLAG00000011879) #21	ENSCLAG00000012822 #22	HAGH (ENSCLAG00000013689) #24	IGFALS (ENSCLAG00000014739) #25	NUBP2 (ENSCLAG00000015595) #26	SPSB3 (ENSCLAG00000013801) #27	EME2 (ENSCLAG00000015876)	MRPS34 (ENSCLAG00000015224) #28	NME3 (ENSCLAG00000015018) #29	MAPK8IP3 (ENSCLAG00000014643) #30	JPT2 (ENSCLAG00000014793) #31	CRAMP1 (ENSCLAG00000013881) #32	IFT140 (ENSCLAG00000013535) #33	TMEM204 (ENSCLAG00000015782) #34	TELO2 (ENSCLAG00000012862) #36	PTX4 (ENSCLAG00000015124)	CLCN7 (ENSCLAG00000014385) #37
Degu	MODERN SPECIES	62	TSC2 (ENSODEG00000013876) #7	NTHL1 (ENSODEG00000014067) #8	NHERF2 (ENSODEG00000013896) #9	ENSODEG00000015297 #10	ZNF598 (ENSODEG00000014650) #11	SYNGR3 (ENSODEG00000014513) #12	GFER (ENSODEG00000014439) #13	NOXO1 (ENSODEG00000013919) #14	TBL3 (ENSODEG00000013930) #16	RNF151 (ENSODEG00000014607) #15	ENSODEG00000013906 ##17	RPL3L (ENSODEG00000015166) #19	ENSODEG00000014218 #20	HS3ST6 (ENSODEG00000013773) #21	ENSODEG00000020141	ENSODEG00000013846 #22	FAHD1 (ENSODEG00000020210) #23	HAGH (ENSODEG00000014503) #24	IGFALS (ENSODEG00000014585) #25	NUBP2 (ENSODEG00000014655) #26	SPSB3 (ENSODEG00000014798) #27	EME2 (ENSODEG00000015003)	MRPS34 (ENSODEG00000015453) #28	NME3 (ENSODEG00000015019) #29	MAPK8IP3 (ENSODEG00000016004) #30	JPT2 (ENSODEG00000016076) #31	CRAMP1 (ENSODEG00000014456) #32	IFT140 (ENSODEG00000015652) #33	TMEM204 (ENSODEG00000015065) #34	TELO2 (ENSODEG00000014830) #36	PTX4 (ENSODEG00000014551)
Guinea pig	MODERN SPECIES	4	PKD1 (ENSCPOG00000003228)	TSC2 (ENSCPOG00000003217) #7	NTHL1 (ENSCPOG00000003211) #8	NHERF2 (ENSCPOG00000026861) #9	ZNF598 (ENSCPOG00000004958) #11	SYNGR3 (ENSCPOG00000035707) #12	GFER (ENSCPOG00000011642) #13	NOXO1 (ENSCPOG00000019858) #14	TBL3 (ENSCPOG00000005998) #16	RNF151 (ENSCPOG00000011654) #15	ENSCPOG00000011651 ##17	NDUFB10 (ENSCPOG00000038375) #18	RPL3L (ENSCPOG00000011631) #19	MSRB1 (ENSCPOG00000011627) #20	HS3ST6 (ENSCPOG00000014346) #21	ENSCPOG00000001543 #22	HAGH (ENSCPOG00000024438) #24	IGFALS (ENSCPOG00000033322) #25	NUBP2 (ENSCPOG00000008071) #26	SPSB3 (ENSCPOG00000026170) #27	EME2 (ENSCPOG00000032066)	MRPS34 (ENSCPOG00000005379) #28	NME3 (ENSCPOG00000035161) #29	MAPK8IP3 (ENSCPOG00000005354) #30	JPT2 (ENSCPOG00000032923) #31	CRAMP1 (ENSCPOG00000005336) #32	TMEM204 (ENSCPOG00000030328) #34	IFT140 (ENSCPOG00000003314) #33	TELO2 (ENSCPOG00000003304) #36	PTX4 (ENSCPOG00000007357)	CLCN7 (ENSCPOG00000012975) #37
Naked mole-rat female	MODERN SPECIES	15	TSC2 (ENSHGLG00000002350) #7	NTHL1 (ENSHGLG00000002461) #8	NHERF2 (ENSHGLG00000002563) #9	ENSHGLG00000032740 #10	ZNF598 (ENSHGLG00000002708) #11	ENSHGLG00000035150	SYNGR3 (ENSHGLG00000031929) #12	GFER (ENSHGLG00000048995) #13	NOXO1 (ENSHGLG00000044783) #14	TBL3 (ENSHGLG00000002431) #16	ENSHGLG00000002492 #15	ENSHGLG00000002542 ##17	ENSHGLG00000003234 #18	RPL3L (ENSHGLG00000003329) #19	HS3ST6 (ENSHGLG00000039701) #21	ENSHGLG00000003597 #22	FAHD1 (ENSHGLG00000041252) #23	HAGH (ENSHGLG00000003923) #24	IGFALS (ENSHGLG00000004496) #25	NUBP2 (ENSHGLG00000004842) #26	SPSB3 (ENSHGLG00000001146) #27	EME2 (ENSHGLG00000038718)	MRPS34 (ENSHGLG00000001213) #28	NME3 (ENSHGLG00000001237) #29	MAPK8IP3 (ENSHGLG00000001589) #30	JPT2 (ENSHGLG00000046712) #31	CRAMP1 (ENSHGLG00000001969) #32	TMEM204 (ENSHGLG00000032434) #34	IFT140 (ENSHGLG00000002078) #33	ENSHGLG00000047108 #36	ENSHGLG00000002228
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00390000015528 #34	ENSGT00940000153417.A #33	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Marmotini	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00940000153417.A #33	ENSGT00390000015528 #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #16	ENSGT00530000063647.A.a #15	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b	ENSGT00390000008964 #28	ENSGT00940000161283 #29	ENSGT00940000153496.a.a #30	ENSGT00390000007652 #31	ENSGT00390000003337 #32	ENSGT00390000015528 #34	ENSGT00940000153417.A #33	ENSGT00390000006698 #36	ENSGT01100000263515.a.a
Arctic ground squirrel	MODERN SPECIES	37	TSC2 (ENSUPAG00010017065) #7	NTHL1 (ENSUPAG00010017055) #8	NHERF2 (ENSUPAG00010017024) #9	ENSUPAG00010017018 #10	ZNF598 (ENSUPAG00010016990) #11	SYNGR3 (ENSUPAG00010016982) #12	GFER (ENSUPAG00010016968) #13	NOXO1 (ENSUPAG00010016951) #14	TBL3 (ENSUPAG00010016941) #16	RNF151 (ENSUPAG00010016927) #15	RPS2 (ENSUPAG00010016573) ##17	NDUFB10 (ENSUPAG00010016562) #18	RPL3L (ENSUPAG00010016544) #19	MSRB1 (ENSUPAG00010016532) #20	HS3ST6 (ENSUPAG00010016522) #21	ENSUPAG00010016481 #22	FAHD1 (ENSUPAG00010016476) #23	HAGH (ENSUPAG00010016451) #24	ENSUPAG00010016447 #25	NUBP2 (ENSUPAG00010016409) #26	SPSB3 (ENSUPAG00010016383) #27	EME2 (ENSUPAG00010016365)	ENSUPAG00010016348 #28	NME3 (ENSUPAG00010016324) #29	MAPK8IP3 (ENSUPAG00010015185) #30	JPT2 (ENSUPAG00010015162) #31	CRAMP1 (ENSUPAG00010015084) #32	TMEM204 (ENSUPAG00010015069) #34	IFT140 (ENSUPAG00010014979) #33	TELO2 (ENSUPAG00010014896) #36	ENSUPAG00010014893
Squirrel	MODERN SPECIES	294	TSC2 (ENSSTOG00000013014) #7	NTHL1 (ENSSTOG00000013011) #8	NHERF2 (ENSSTOG00000013004) #9	ENSSTOG00000022004 #10	ZNF598 (ENSSTOG00000012994) #11	SYNGR3 (ENSSTOG00000012987) #12	GFER (ENSSTOG00000023807) #13	NOXO1 (ENSSTOG00000023430) #14	TBL3 (ENSSTOG00000012964) #16	ENSSTOG00000023350 #15	ENSSTOG00000012944 ##17	NDUFB10 (ENSSTOG00000012938) #18	RPL3L (ENSSTOG00000012921) #19	MSRB1 (ENSSTOG00000034478) #20	HS3ST6 (ENSSTOG00000012919) #21	ENSSTOG00000020433 #22	HAGH (ENSSTOG00000009109) #24	IGFALS (ENSSTOG00000027057) #25	NUBP2 (ENSSTOG00000026670) #26	SPSB3 (ENSSTOG00000021171) #27	EME2 (ENSSTOG00000000961)	MRPS34 (ENSSTOG00000021586) #28	NME3 (ENSSTOG00000028986) #29	MAPK8IP3 (ENSSTOG00000003734) #30	JPT2 (ENSSTOG00000003729) #31	ENSSTOG00000025346	CRAMP1 (ENSSTOG00000003675) #32	IFT140 (ENSSTOG00000003636) #33	TMEM204 (ENSSTOG00000021652) #34	TELO2 (ENSSTOG00000003610) #36	PTX4 (ENSSTOG00000003603)
Alpin marmot	MODERN SPECIES	28	ENSMMMG00000009812	TSC2 (ENSMMMG00000009837) #7	NTHL1 (ENSMMMG00000010821) #8	NHERF2 (ENSMMMG00000010827) #9	ENSMMMG00000010835	ZNF598 (ENSMMMG00000010846) #11	SYNGR3 (ENSMMMG00000010863) #12	GFER (ENSMMMG00000010878) #13	NOXO1 (ENSMMMG00000010886) #14	RNF151 (ENSMMMG00000010935) #15	RPS2 (ENSMMMG00000010948) #17	NDUFB10 (ENSMMMG00000010988) #18	RPL3L (ENSMMMG00000011010) #19	MSRB1 (ENSMMMG00000011047) #20	HS3ST6 (ENSMMMG00000011071) #21	ENSMMMG00000011082 #22	FAHD1 (ENSMMMG00000011106) #23	HAGH (ENSMMMG00000011110) #24	IGFALS (ENSMMMG00000011124) #25	NUBP2 (ENSMMMG00000011128) #26	SPSB3 (ENSMMMG00000011143) #27	EME2 (ENSMMMG00000011151)	MRPS34 (ENSMMMG00000011168) #28	MAPK8IP3 (ENSMMMG00000011208) #30	JPT2 (ENSMMMG00000015507) #31	CRAMP1 (ENSMMMG00000015511) #32	IFT140 (ENSMMMG00000015580) #33	TMEM204 (ENSMMMG00000015619) #34	TELO2 (ENSMMMG00000015629) #36	PTX4 (ENSMMMG00000015680)	CLCN7 (ENSMMMG00000015689) #37
Eurasian red squirrel	MODERN SPECIES	9	RAB26 (ENSSVLG00005023508)	TSC2 (ENSSVLG00005020810) #7	NTHL1 (ENSSVLG00005020622) #8	NHERF2 (ENSSVLG00005020506) #9	ENSSVLG00005020465 #10	ZNF598 (ENSSVLG00005020435) #11	SYNGR3 (ENSSVLG00005020383) #12	GFER (ENSSVLG00005020336) #13	NOXO1 (ENSSVLG00005020093) #14	RNF151 (ENSSVLG00005019772) #15	ENSSVLG00005019653 ##17	NDUFB10 (ENSSVLG00005019544) #18	RPL3L (ENSSVLG00005019463) #19	MSRB1 (ENSSVLG00005019321) #20	HS3ST6 (ENSSVLG00005019256) #21	ENSSVLG00005019191 #22	ENSSVLG00005019134 #23	HAGH (ENSSVLG00005018908) #24	IGFALS (ENSSVLG00005018848) #25	NUBP2 (ENSSVLG00005018731) #26	EME2 (ENSSVLG00005018557)	MRPS34 (ENSSVLG00005018518) #28	NME3 (ENSSVLG00005018434) #29	MAPK8IP3 (ENSSVLG00005018319) #30	JPT2 (ENSSVLG00005018232) #31	CRAMP1 (ENSSVLG00005018001) #32	TMEM204 (ENSSVLG00005017964) #34	IFT140 (ENSSVLG00005017909) #33	TELO2 (ENSSVLG00005017874) #36	PTX4 (ENSSVLG00005017820)	CLCN7 (ENSSVLG00005017491) #37