Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000001723 #22
Gnathostomata	ANCESTRAL SPECIES	83		ENSGT00940000156922.a	ENSGT00940000159156	ENSGT00940000156940	ENSGT00940000159298	ENSGT00390000009492	ENSGT00500000044930	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095 #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000159176 #24	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459
Euteleostomi	ANCESTRAL SPECIES	134	ENSGT00940000156922.a	ENSGT00940000159156	ENSGT00940000156940	ENSGT00940000159298	ENSGT00390000009492	ENSGT00500000044930	ENSGT00940000155335	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095 #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459
Sarcopterygii	ANCESTRAL SPECIES	243								ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095 #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000063702.b	ENSGT00940000159920
Tetrapoda	ANCESTRAL SPECIES	31	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095 #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.b	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090
Amniota	ANCESTRAL SPECIES	11	ENSGT00940000158204.b #10	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a #17	ENSGT00390000006348 #18	ENSGT00940000153095.h ##17	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Mammalia	ANCESTRAL SPECIES	43	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a #17	ENSGT00390000006348 #18	ENSGT00940000153095.h ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Theria	ANCESTRAL SPECIES	10	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Eutheria	ANCESTRAL SPECIES	23	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Glires	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Rodentia	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Rodentia_B	ANCESTRAL SPECIES	15	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Myomorpha	ANCESTRAL SPECIES	17	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Muroidea	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Chinese hamster chok1gshd	MODERN SPECIES	229	Tsc2 (ENSCGRG00001012289) #7	NTHL1 (ENSCGRG00001012482) #8	Nherf2 (ENSCGRG00001015951) #9	Npw (ENSCGRG00001017678) #10	Zfp598 (ENSCGRG00001021070) #11	Syngr3 (ENSCGRG00001014491) #12	Gfer (ENSCGRG00001023595) #13	Noxo1 (ENSCGRG00001020009) #14	Tbl3 (ENSCGRG00001021817) #15	Rnf151 (ENSCGRG00001023396) #16	Rps2 (ENSCGRG00001023670) #17	Ndufb10 (ENSCGRG00001013121) #18	Rpl3l (ENSCGRG00001016900) #19	Msrb1 (ENSCGRG00001023043) #20	Hs3st6 (ENSCGRG00001024254) #21	Meiob (ENSCGRG00001024640) #22	Fahd1 (ENSCGRG00001013933) #23	Hagh (ENSCGRG00001014522) #24	Igfals (ENSCGRG00001023230) #25	Nubp2 (ENSCGRG00001024233) #26	Spsb3 (ENSCGRG00001017880) #27	Eme2 (ENSCGRG00001014405) #28	Mrps34 (ENSCGRG00001023318) #29	Nme3 (ENSCGRG00001024438) #30	Mapk8ip3 (ENSCGRG00001009625) #31	Jpt2 (ENSCGRG00001023398) #32	Cramp1 (ENSCGRG00001024738) #33	Ift140 (ENSCGRG00001020155) #34	Tmem204 (ENSCGRG00001023413) #35	Telo2 (ENSCGRG00001024725) #36	Ptx4 (ENSCGRG00001018707) #37
Golden Hamster	MODERN SPECIES	733	Pkd1 (ENSMAUG00000014808)	Tsc2 (ENSMAUG00000007571) #7	Nthl1 (ENSMAUG00000011440) #8	Nherf2 (ENSMAUG00000005047) #9	Npw (ENSMAUG00000009076) #10	Zfp598 (ENSMAUG00000020596) #11	Syngr3 (ENSMAUG00000004857) #12	Gfer (ENSMAUG00000001778) #13	Noxo1 (ENSMAUG00000019212) #14	Tbl3 (ENSMAUG00000008718) #15	Rnf151 (ENSMAUG00000004941) #16	Ndufb10 (ENSMAUG00000007967) #18	Rpl3l (ENSMAUG00000008094) #19	Msrb1 (ENSMAUG00000019299) #20	Hs3st6 (ENSMAUG00000018680) #21	Meiob (ENSMAUG00000021803) #22	Fahd1 (ENSMAUG00000008227) #23	Hagh (ENSMAUG00000012144) #24	Igfals (ENSMAUG00000021813) #25	Nubp2 (ENSMAUG00000006099) #26	Spsb3 (ENSMAUG00000011949) #27	Eme2 (ENSMAUG00000008967) #28	Mrps34 (ENSMAUG00000015906) #29	Nme3 (ENSMAUG00000008485) #30	Mapk8ip3 (ENSMAUG00000010859) #31	ENSMAUG00000007417	Jpt2 (ENSMAUG00000005592) #32	Cramp1 (ENSMAUG00000019364) #33	ENSMAUG00000022190 #34	Tmem204 (ENSMAUG00000008010) #35	ENSMAUG00000022008 #34
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	21	Gabra6 (ENSPEMG00000000050)	ENSPEMG00000027790	Gabra1 (ENSPEMG00000026750)	Gabrg2 (ENSPEMG00000016073)	ENSPEMG00000027245	Nudcd2 (ENSPEMG00000030830)	Hmmr (ENSPEMG00000011199)	Mat2b (ENSPEMG00000000715)	ENSPEMG00000025585	Tenm2 (ENSPEMG00000018309)	Wwc1 (ENSPEMG00000011501)	Rars (ENSPEMG00000020288)	Fbll1 (ENSPEMG00000020325)	Pank3 (ENSPEMG00000024678)	Slit3 (ENSPEMG00000018195)	ENSPEMG00000025128 #22	ENSPEMG00000013732 #23	Hagh (ENSPEMG00000010566) #24	Igfals (ENSPEMG00000008578) #25	Nubp2 (ENSPEMG00000010441) #26	Spsb3 (ENSPEMG00000016895) #27	Eme2 (ENSPEMG00000001093) #28	Mrps34 (ENSPEMG00000005957) #29	Nme3 (ENSPEMG00000018639) #30	Mapk8ip3 (ENSPEMG00000011936) #31	Jpt2 (ENSPEMG00000017546) #32	Cramp1 (ENSPEMG00000007023) #33	Tmem204 (ENSPEMG00000027984) #35	Ift140 (ENSPEMG00000014706) #34	Telo2 (ENSPEMG00000017007) #36	Ptx4 (ENSPEMG00000012407) #37
Northern American deer mouse	MODERN SPECIES	21	Tsc2 (ENSPEMG00000017951) #7	Nthl1 (ENSPEMG00000015321) #8	Nherf2 (ENSPEMG00000008746) #9	Npw (ENSPEMG00000013065) #10	Zfp598 (ENSPEMG00000013518) #11	Syngr3 (ENSPEMG00000025114) #12	Gfer (ENSPEMG00000024300) #13	Noxo1 (ENSPEMG00000018859) #14	Tbl3 (ENSPEMG00000009768) #15	Rnf151 (ENSPEMG00000010081) #16	ENSPEMG00000012503 ##17	Ndufb10 (ENSPEMG00000018512) #18	Rpl3l (ENSPEMG00000010667) #19	Msrb1 (ENSPEMG00000018902) #20	Hs3st6 (ENSPEMG00000016998) #21	ENSPEMG00000025436 #22	Spdl1 (ENSPEMG00000009912)	Dock2 (ENSPEMG00000015007)	Insyn2b (ENSPEMG00000015788)	Foxi1 (ENSPEMG00000015123)	4930469K13Rik (ENSPEMG00000029094)	Lcp2 (ENSPEMG00000011935)	Kcnmb1 (ENSPEMG00000025688)	Kcnip1 (ENSPEMG00000007681)	Gabrp (ENSPEMG00000008255)	Ranbp17 (ENSPEMG00000013086)	Tlx3 (ENSPEMG00000009002)	ENSPEMG00000010032	Fgf18 (ENSPEMG00000027707)	ENSPEMG00000005862	Smim23 (ENSPEMG00000009648)
Prairie vole	MODERN SPECIES	15	Tsc2 (ENSMOCG00000014270) #7	Nthl1 (ENSMOCG00000022584) #8	Nherf2 (ENSMOCG00000022945) #9	Npw (ENSMOCG00000007567) #10	Zfp598 (ENSMOCG00000015693) #11	Syngr3 (ENSMOCG00000010060) #12	Gfer (ENSMOCG00000003379) #13	Noxo1 (ENSMOCG00000022179) #14	Tbl3 (ENSMOCG00000019634) #15	Rnf151 (ENSMOCG00000021816) #16	ENSMOCG00000014200 ##17	Ndufb10 (ENSMOCG00000011750) #18	Rpl3l (ENSMOCG00000020012) #19	Msrb1 (ENSMOCG00000013864) #20	Hs3st6 (ENSMOCG00000022877) #21	Meiob (ENSMOCG00000020796) #22	Fahd1 (ENSMOCG00000001032) #23	Hagh (ENSMOCG00000020674) #24	Igfals (ENSMOCG00000013702) #25	Nubp2 (ENSMOCG00000003091) #26	Spsb3 (ENSMOCG00000000734) #27	Eme2 (ENSMOCG00000019621) #28	Mrps34 (ENSMOCG00000004274) #29	ENSMOCG00000003271 #30	Mapk8ip3 (ENSMOCG00000018334) #31	Jpt2 (ENSMOCG00000022903) #32	Cramp1 (ENSMOCG00000015569) #33	ENSMOCG00000011625 #34	Tmem204 (ENSMOCG00000010004) #35	ENSMOCG00000014894 #34	Telo2 (ENSMOCG00000022271) #36
Murinae	ANCESTRAL SPECIES	7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b.b ##17	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Mus	ANCESTRAL SPECIES	21	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652.r #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652.r #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652.q.b #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
spretus	MODERN SPECIES	8	Caskin1 (MGP_SPRETEiJ_G0022099)	Traf7 (MGP_SPRETEiJ_G0022100)	Rab26 (MGP_SPRETEiJ_G0022101)	Pkd1 (MGP_SPRETEiJ_G0022102)	Nthl1 (MGP_SPRETEiJ_G0022103) #8	Nherf2 (MGP_SPRETEiJ_G0022104) #9	MGP_SPRETEiJ_G0022105 #10	Zfp598 (MGP_SPRETEiJ_G0022106) #11	Syngr3 (MGP_SPRETEiJ_G0022107) #12	Gfer (MGP_SPRETEiJ_G0022108) #13	Noxo1 (MGP_SPRETEiJ_G0022109) #14	Tbl3 (MGP_SPRETEiJ_G0022110) #15	Rnf151 (MGP_SPRETEiJ_G0022111) #16	Msrb1 (MGP_SPRETEiJ_G0022112) #20	Hs3st6 (MGP_SPRETEiJ_G0022113) #21	Meiob (MGP_SPRETEiJ_G0022114) #22	Hagh (MGP_SPRETEiJ_G0022115) #24	Fahd1 (MGP_SPRETEiJ_G0022116) #23	MGP_SPRETEiJ_G0022117 #19	Ndufb10 (MGP_SPRETEiJ_G0022118) #18	MGP_SPRETEiJ_G0022119	Igfals (MGP_SPRETEiJ_G0022120) #25	Nubp2 (MGP_SPRETEiJ_G0022121) #26	Spsb3 (MGP_SPRETEiJ_G0022122) #27	MGP_SPRETEiJ_G0022123	Mapk8ip3 (MGP_SPRETEiJ_G0022124) #31	Mrps34 (MGP_SPRETEiJ_G0022125) #29	Nme3 (MGP_SPRETEiJ_G0022126) #30	Jpt2 (MGP_SPRETEiJ_G0022127) #32	Cramp1 (MGP_SPRETEiJ_G0022128) #33	Ift140 (MGP_SPRETEiJ_G0022129) #34
Steppe mouse	MODERN SPECIES	3126	Tsc2 (ENSMSIG00000006743) #7	Nthl1 (ENSMSIG00000007949) #8	Nherf2 (ENSMSIG00000007960) #9	Npw (ENSMSIG00000007993) #10	Zfp598 (ENSMSIG00000008003) #11	ENSMSIG00000008029 #12	ENSMSIG00000008048 #13	Noxo1 (ENSMSIG00000008056) #14	Tbl3 (ENSMSIG00000008080) #15	Rnf151 (ENSMSIG00000008128) #16	Rps2 (ENSMSIG00000008161) ##17	Ndufb10 (ENSMSIG00000008241) #18	Rpl3l (ENSMSIG00000008247) #19	Msrb1 (ENSMSIG00000008280) #20	Hs3st6 (ENSMSIG00000008324) #21	Meiob (ENSMSIG00000008345) #22	Fahd1 (ENSMSIG00000008407) #23	Hagh (ENSMSIG00000008421) #24	Igfals (ENSMSIG00000008467) #25	Nubp2 (ENSMSIG00000008482) #26	ENSMSIG00000008500 #27	Eme2 (ENSMSIG00000008685) #28	Mrps34 (ENSMSIG00000008733) #29	Nme3 (ENSMSIG00000008746) #30	Mapk8ip3 (ENSMSIG00000008777) #31	ENSMSIG00000010638 #32	Cramp1 (ENSMSIG00000010664) #33	Ift140 (ENSMSIG00000010724) #34	Tmem204 (ENSMSIG00000010873) #35	Telo2 (ENSMSIG00000010889) #36	Ptx4 (ENSMSIG00000010971) #37
Mouse	MODERN SPECIES	8	Tsc2 (ENSMUSG00000002496) #7	Nthl1 (ENSMUSG00000041429) #8	Nherf2 (ENSMUSG00000002504) #9	Npw (ENSMUSG00000071230) #10	Zfp598 (ENSMUSG00000041130) #11	Syngr3 (ENSMUSG00000007021) #12	Gfer (ENSMUSG00000040888) #13	Noxo1 (ENSMUSG00000019320) #14	Tbl3 (ENSMUSG00000040688) #15	Rnf151 (ENSMUSG00000008482) #16	Rps2 (ENSMUSG00000044533) ##17	Ndufb10 (ENSMUSG00000040048) #18	Rpl3l (ENSMUSG00000002500) #19	Msrb1 (ENSMUSG00000075705) #20	Hs3st6 (ENSMUSG00000039628) #21	Meiob (ENSMUSG00000024155) #22	Hagh (ENSMUSG00000024158) #24	Fahd1 (ENSMUSG00000045316) #23	Igfals (ENSMUSG00000046070) #25	Nubp2 (ENSMUSG00000039183) #26	Spsb3 (ENSMUSG00000024160) #27	Eme2 (ENSMUSG00000073436) #28	Mapk8ip3 (ENSMUSG00000024163) #31	Mrps34 (ENSMUSG00000038880) #29	Nme3 (ENSMUSG00000073435) #30	Jpt2 (ENSMUSG00000024165) #32	Cramp1 (ENSMUSG00000038002) #33	Ift140 (ENSMUSG00000024169) #34	Tmem204 (ENSMUSG00000024168) #35	Telo2 (ENSMUSG00000024170) #36	Ptx4 (ENSMUSG00000044172) #37
Ryukyu mouse	MODERN SPECIES	8	Rab26 (MGP_CAROLIEiJ_G0021191)	Pkd1 (MGP_CAROLIEiJ_G0021192)	Nthl1 (MGP_CAROLIEiJ_G0021193) #8	Nherf2 (MGP_CAROLIEiJ_G0021194) #9	MGP_CAROLIEiJ_G0021195 #10	Syngr3 (MGP_CAROLIEiJ_G0021196) #12	Gfer (MGP_CAROLIEiJ_G0021197) #13	Noxo1 (MGP_CAROLIEiJ_G0021198) #14	Tbl3 (MGP_CAROLIEiJ_G0021199) #15	Rnf151 (MGP_CAROLIEiJ_G0021200) #16	MGP_CAROLIEiJ_G0021201 ##17	Ndufb10 (MGP_CAROLIEiJ_G0021202) #18	Rpl3l (MGP_CAROLIEiJ_G0021203) #19	Msrb1 (MGP_CAROLIEiJ_G0021204) #20	Hs3st6 (MGP_CAROLIEiJ_G0021205) #21	Meiob (MGP_CAROLIEiJ_G0021206) #22	Hagh (MGP_CAROLIEiJ_G0021207) #24	Fahd1 (MGP_CAROLIEiJ_G0021208) #23	Igfals (MGP_CAROLIEiJ_G0021209) #25	Nubp2 (MGP_CAROLIEiJ_G0021210) #26	MGP_CAROLIEiJ_G0021211 #27	Eme2 (MGP_CAROLIEiJ_G0021212) #28	Mapk8ip3 (MGP_CAROLIEiJ_G0021213) #31	Mrps34 (MGP_CAROLIEiJ_G0021214) #29	Nme3 (MGP_CAROLIEiJ_G0021215) #30	MGP_CAROLIEiJ_G0021216 #32	Cramp1 (MGP_CAROLIEiJ_G0021217) #33	Ift140 (MGP_CAROLIEiJ_G0021218) #34	Tmem204 (MGP_CAROLIEiJ_G0021219) #35	Telo2 (MGP_CAROLIEiJ_G0021220) #36	Ptx4 (MGP_CAROLIEiJ_G0021221) #37
Shrew mouse	MODERN SPECIES	13	Pkd1 (MGP_PahariEiJ_G0023508)	Nthl1 (MGP_PahariEiJ_G0023509) #8	Nherf2 (MGP_PahariEiJ_G0023510) #9	Npw (MGP_PahariEiJ_G0023511) #10	Zfp598 (MGP_PahariEiJ_G0023512) #11	Syngr3 (MGP_PahariEiJ_G0023513) #12	Gfer (MGP_PahariEiJ_G0023514) #13	Noxo1 (MGP_PahariEiJ_G0023515) #14	Tbl3 (MGP_PahariEiJ_G0023516) #15	Rnf151 (MGP_PahariEiJ_G0023517) #16	MGP_PahariEiJ_G0023518 ##17	Ndufb10 (MGP_PahariEiJ_G0023519) #18	Rpl3l (MGP_PahariEiJ_G0023520) #19	Msrb1 (MGP_PahariEiJ_G0023521) #20	Hs3st6 (MGP_PahariEiJ_G0023522) #21	Meiob (MGP_PahariEiJ_G0023523) #22	Hagh (MGP_PahariEiJ_G0023524) #24	Fahd1 (MGP_PahariEiJ_G0023525) #23	Igfals (MGP_PahariEiJ_G0023526) #25	Nubp2 (MGP_PahariEiJ_G0023527) #26	MGP_PahariEiJ_G0023528 #27	Eme2 (MGP_PahariEiJ_G0023529) #28	Mapk8ip3 (MGP_PahariEiJ_G0023530) #31	Mrps34 (MGP_PahariEiJ_G0023531) #29	Nme3 (MGP_PahariEiJ_G0023532) #30	MGP_PahariEiJ_G0023533 #32	MGP_PahariEiJ_G0023534 #32	Cramp1 (MGP_PahariEiJ_G0023535) #33	Ift140 (MGP_PahariEiJ_G0023536) #34	Tmem204 (MGP_PahariEiJ_G0023537) #35	Telo2 (MGP_PahariEiJ_G0023538) #36
Rat	MODERN SPECIES	1	Tsc2 (ENSRNOG00000011375) #7	Nthl1 (ENSRNOG00000012213) #8	Nherf2 (ENSRNOG00000002997) #9	Npw (ENSRNOG00000012390) #10	Zfp598 (ENSRNOG00000012434) #11	Syngr3 (ENSRNOG00000012620) #12	Gfer (ENSRNOG00000013370) #13	Noxo1 (ENSRNOG00000025117) #14	Tbl3 (ENSRNOG00000013429) #15	Rnf151 (ENSRNOG00000014127) #16	Rps2 (ENSRNOG00000014179) ##17	Ndufb10 (ENSRNOG00000014568) #18	Rpl3l (ENSRNOG00000014641) #19	Msrb1 (ENSRNOG00000055314) #20	Hs3st6 (ENSRNOG00000014672) #21	Meiob (ENSRNOG00000014711) #22	Fahd1 (ENSRNOG00000014727) #23	Hagh (ENSRNOG00000014743) #24	Igfals (ENSRNOG00000015061) #25	Nubp2 (ENSRNOG00000015090) #26	Spsb3 (ENSRNOG00000015300) #27	Eme2 (ENSRNOG00000024867) #28	Mrps34 (ENSRNOG00000015479) #29	Nme3 (ENSRNOG00000015749) #30	Mapk8ip3 (ENSRNOG00000033568) #31	Jpt2 (ENSRNOG00000024661) #32	Cramp1 (ENSRNOG00000024635) #33	Ift140 (ENSRNOG00000016545) #34	Tmem204 (ENSRNOG00000016494) #35	Telo2 (ENSRNOG00000016774) #36	Ptx4 (ENSRNOG00000060934) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1760	Tsc2 (ENSNGAG00000021283) #7	Nthl1 (ENSNGAG00000023847) #8	Nherf2 (ENSNGAG00000016521) #9	Npw (ENSNGAG00000022441) #10	Zfp598 (ENSNGAG00000021072) #11	Syngr3 (ENSNGAG00000004429) #12	Gfer (ENSNGAG00000024200) #13	Noxo1 (ENSNGAG00000023406) #14	Rnf151 (ENSNGAG00000003547) #16	Tbl3 (ENSNGAG00000002428) #15	ENSNGAG00000013739 ##17	Ndufb10 (ENSNGAG00000015798) #18	Rpl3l (ENSNGAG00000023163) #19	Msrb1 (ENSNGAG00000015847) #20	Hs3st6 (ENSNGAG00000011421) #21	Meiob (ENSNGAG00000006985) #22	Fahd1 (ENSNGAG00000013637) #23	Hagh (ENSNGAG00000024100) #24	Igfals (ENSNGAG00000014838) #25	Nubp2 (ENSNGAG00000001165) #26	Spsb3 (ENSNGAG00000023785) #27	Mrps34 (ENSNGAG00000023629) #29	Nme3 (ENSNGAG00000022562) #30	Mapk8ip3 (ENSNGAG00000021573) #31	Jpt2 (ENSNGAG00000021166) #32	Cramp1 (ENSNGAG00000012239) #33	ENSNGAG00000019576 #34	Tmem204 (ENSNGAG00000016981) #35	ENSNGAG00000010476 #34	Telo2 (ENSNGAG00000020065) #36	Clcn7 (ENSNGAG00000022952)
Lesser Egyptian jerboa	MODERN SPECIES	47	Tsc2 (ENSJJAG00000010773) #7	Nthl1 (ENSJJAG00000010038) #8	Nherf2 (ENSJJAG00000022481) #9	ENSJJAG00000004536	Zfp598 (ENSJJAG00000012668) #11	Syngr3 (ENSJJAG00000022558) #12	Gfer (ENSJJAG00000002661) #13	Noxo1 (ENSJJAG00000019469) #14	Tbl3 (ENSJJAG00000004124) #15	Rnf151 (ENSJJAG00000006822) #16	ENSJJAG00000011197 ##17	ENSJJAG00000011730 #18	Rpl3l (ENSJJAG00000011979) #19	Msrb1 (ENSJJAG00000023868) #20	Hs3st6 (ENSJJAG00000018711) #21	Meiob (ENSJJAG00000020956) #22	Fahd1 (ENSJJAG00000012552) #23	ENSJJAG00000018924 #24	Igfals (ENSJJAG00000014391) #25	Nubp2 (ENSJJAG00000010092) #26	Spsb3 (ENSJJAG00000005206) #27	Eme2 (ENSJJAG00000022042) #28	Mrps34 (ENSJJAG00000016768) #29	Nme3 (ENSJJAG00000014938) #30	Mapk8ip3 (ENSJJAG00000012043) #31	ENSJJAG00000022922 #32	Cramp1 (ENSJJAG00000019556) #33	Tmem204 (ENSJJAG00000016676) #35	Ift140 (ENSJJAG00000015483) #34	Telo2 (ENSJJAG00000019914) #36	Ptx4 (ENSJJAG00000023455) #37
Kangaroo rat	MODERN SPECIES	333	Pkd1 (ENSDORG00000013708)	Tsc2 (ENSDORG00000013702) #7	Nthl1 (ENSDORG00000013701) #8	Nherf2 (ENSDORG00000013700) #9	Zfp598 (ENSDORG00000007907) #11	Syngr3 (ENSDORG00000024759) #12	Gfer (ENSDORG00000025553) #13	Noxo1 (ENSDORG00000007379) #14	Tbl3 (ENSDORG00000007377) #15	ENSDORG00000007376 #16	ENSDORG00000007375 ##17	Ndufb10 (ENSDORG00000007374) #18	Rpl3l (ENSDORG00000007373) #19	Msrb1 (ENSDORG00000025189) #20	Hs3st6 (ENSDORG00000023206) #21	Meiob (ENSDORG00000012742) #22	Hagh (ENSDORG00000009673) #24	Igfals (ENSDORG00000009672) #25	Nubp2 (ENSDORG00000009670) #26	Spsb3 (ENSDORG00000009668) #27	ENSDORG00000027160 #28	ENSDORG00000009659 #31	ENSDORG00000026402 #31	Jpt2 (ENSDORG00000025742) #32	Cramp1 (ENSDORG00000013715) #33	Ift140 (ENSDORG00000004166) #34	Tmem204 (ENSDORG00000028876) #35	Telo2 (ENSDORG00000004164) #36	Ptx4 (ENSDORG00000000363) #37	Clcn7 (ENSDORG00000009312)	Ccdc154 (ENSDORG00000009310)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348.m #18	ENSGT00940000153095.g.b.a.b.h ##17	ENSGT00390000006348.n #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.b.h ##17	ENSGT00390000006348.n #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.b.h ##17	ENSGT00390000006348.n #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Long-tailed chinchilla	MODERN SPECIES	149	NTHL1 (ENSCLAG00000011819) #8	NHERF2 (ENSCLAG00000013193) #9	NPW (ENSCLAG00000014103) #10	ZNF598 (ENSCLAG00000012014) #11	SYNGR3 (ENSCLAG00000014459) #12	GFER (ENSCLAG00000013056) #13	NOXO1 (ENSCLAG00000012905) #14	TBL3 (ENSCLAG00000013342) #15	RNF151 (ENSCLAG00000014779) #16	ENSCLAG00000016080 ##17	NDUFB10 (ENSCLAG00000013856) #18	ENSCLAG00000016182	RPL3L (ENSCLAG00000015614) #19	MSRB1 (ENSCLAG00000016348) #20	HS3ST6 (ENSCLAG00000011879) #21	ENSCLAG00000012822 #22	HAGH (ENSCLAG00000013689) #24	IGFALS (ENSCLAG00000014739) #25	NUBP2 (ENSCLAG00000015595) #26	SPSB3 (ENSCLAG00000013801) #27	EME2 (ENSCLAG00000015876) #28	MRPS34 (ENSCLAG00000015224) #29	NME3 (ENSCLAG00000015018) #30	MAPK8IP3 (ENSCLAG00000014643) #31	JPT2 (ENSCLAG00000014793) #32	CRAMP1 (ENSCLAG00000013881) #33	IFT140 (ENSCLAG00000013535) #34	TMEM204 (ENSCLAG00000015782) #35	TELO2 (ENSCLAG00000012862) #36	PTX4 (ENSCLAG00000015124) #37	CLCN7 (ENSCLAG00000014385)
Degu	MODERN SPECIES	62	TSC2 (ENSODEG00000013876) #7	NTHL1 (ENSODEG00000014067) #8	NHERF2 (ENSODEG00000013896) #9	ENSODEG00000015297 #10	ZNF598 (ENSODEG00000014650) #11	SYNGR3 (ENSODEG00000014513) #12	GFER (ENSODEG00000014439) #13	NOXO1 (ENSODEG00000013919) #14	TBL3 (ENSODEG00000013930) #15	RNF151 (ENSODEG00000014607) #16	ENSODEG00000013906 ##17	RPL3L (ENSODEG00000015166) #19	ENSODEG00000014218 #20	HS3ST6 (ENSODEG00000013773) #21	ENSODEG00000020141	ENSODEG00000013846 #22	FAHD1 (ENSODEG00000020210) #23	HAGH (ENSODEG00000014503) #24	IGFALS (ENSODEG00000014585) #25	NUBP2 (ENSODEG00000014655) #26	SPSB3 (ENSODEG00000014798) #27	EME2 (ENSODEG00000015003) #28	MRPS34 (ENSODEG00000015453) #29	NME3 (ENSODEG00000015019) #30	MAPK8IP3 (ENSODEG00000016004) #31	JPT2 (ENSODEG00000016076) #32	CRAMP1 (ENSODEG00000014456) #33	IFT140 (ENSODEG00000015652) #34	TMEM204 (ENSODEG00000015065) #35	TELO2 (ENSODEG00000014830) #36	PTX4 (ENSODEG00000014551) #37
Guinea pig	MODERN SPECIES	4	PKD1 (ENSCPOG00000003228)	TSC2 (ENSCPOG00000003217) #7	NTHL1 (ENSCPOG00000003211) #8	NHERF2 (ENSCPOG00000026861) #9	ZNF598 (ENSCPOG00000004958) #11	SYNGR3 (ENSCPOG00000035707) #12	GFER (ENSCPOG00000011642) #13	NOXO1 (ENSCPOG00000019858) #14	TBL3 (ENSCPOG00000005998) #15	RNF151 (ENSCPOG00000011654) #16	ENSCPOG00000011651 ##17	NDUFB10 (ENSCPOG00000038375) #18	RPL3L (ENSCPOG00000011631) #19	MSRB1 (ENSCPOG00000011627) #20	HS3ST6 (ENSCPOG00000014346) #21	ENSCPOG00000001543 #22	HAGH (ENSCPOG00000024438) #24	IGFALS (ENSCPOG00000033322) #25	NUBP2 (ENSCPOG00000008071) #26	SPSB3 (ENSCPOG00000026170) #27	EME2 (ENSCPOG00000032066) #28	MRPS34 (ENSCPOG00000005379) #29	NME3 (ENSCPOG00000035161) #30	MAPK8IP3 (ENSCPOG00000005354) #31	JPT2 (ENSCPOG00000032923) #32	CRAMP1 (ENSCPOG00000005336) #33	TMEM204 (ENSCPOG00000030328) #35	IFT140 (ENSCPOG00000003314) #34	TELO2 (ENSCPOG00000003304) #36	PTX4 (ENSCPOG00000007357) #37	CLCN7 (ENSCPOG00000012975)
Naked mole-rat female	MODERN SPECIES	15	TSC2 (ENSHGLG00000002350) #7	NTHL1 (ENSHGLG00000002461) #8	NHERF2 (ENSHGLG00000002563) #9	ENSHGLG00000032740 #10	ZNF598 (ENSHGLG00000002708) #11	ENSHGLG00000035150	SYNGR3 (ENSHGLG00000031929) #12	GFER (ENSHGLG00000048995) #13	NOXO1 (ENSHGLG00000044783) #14	TBL3 (ENSHGLG00000002431) #15	ENSHGLG00000002492 #16	ENSHGLG00000002542 ##17	ENSHGLG00000003234 #18	RPL3L (ENSHGLG00000003329) #19	HS3ST6 (ENSHGLG00000039701) #21	ENSHGLG00000003597 #22	FAHD1 (ENSHGLG00000041252) #23	HAGH (ENSHGLG00000003923) #24	IGFALS (ENSHGLG00000004496) #25	NUBP2 (ENSHGLG00000004842) #26	SPSB3 (ENSHGLG00000001146) #27	EME2 (ENSHGLG00000038718) #28	MRPS34 (ENSHGLG00000001213) #29	NME3 (ENSHGLG00000001237) #30	MAPK8IP3 (ENSHGLG00000001589) #31	JPT2 (ENSHGLG00000046712) #32	CRAMP1 (ENSHGLG00000001969) #33	TMEM204 (ENSHGLG00000032434) #35	IFT140 (ENSHGLG00000002078) #34	ENSHGLG00000047108 #36	ENSHGLG00000002228 #37
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Marmotini	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Arctic ground squirrel	MODERN SPECIES	37	TSC2 (ENSUPAG00010017065) #7	NTHL1 (ENSUPAG00010017055) #8	NHERF2 (ENSUPAG00010017024) #9	ENSUPAG00010017018 #10	ZNF598 (ENSUPAG00010016990) #11	SYNGR3 (ENSUPAG00010016982) #12	GFER (ENSUPAG00010016968) #13	NOXO1 (ENSUPAG00010016951) #14	TBL3 (ENSUPAG00010016941) #15	RNF151 (ENSUPAG00010016927) #16	RPS2 (ENSUPAG00010016573) ##17	NDUFB10 (ENSUPAG00010016562) #18	RPL3L (ENSUPAG00010016544) #19	MSRB1 (ENSUPAG00010016532) #20	HS3ST6 (ENSUPAG00010016522) #21	ENSUPAG00010016481 #22	FAHD1 (ENSUPAG00010016476) #23	HAGH (ENSUPAG00010016451) #24	ENSUPAG00010016447 #25	NUBP2 (ENSUPAG00010016409) #26	SPSB3 (ENSUPAG00010016383) #27	EME2 (ENSUPAG00010016365) #28	ENSUPAG00010016348 #29	NME3 (ENSUPAG00010016324) #30	MAPK8IP3 (ENSUPAG00010015185) #31	JPT2 (ENSUPAG00010015162) #32	CRAMP1 (ENSUPAG00010015084) #33	TMEM204 (ENSUPAG00010015069) #35	IFT140 (ENSUPAG00010014979) #34	TELO2 (ENSUPAG00010014896) #36	ENSUPAG00010014893
Squirrel	MODERN SPECIES	294	TSC2 (ENSSTOG00000013014) #7	NTHL1 (ENSSTOG00000013011) #8	NHERF2 (ENSSTOG00000013004) #9	ENSSTOG00000022004 #10	ZNF598 (ENSSTOG00000012994) #11	SYNGR3 (ENSSTOG00000012987) #12	GFER (ENSSTOG00000023807) #13	NOXO1 (ENSSTOG00000023430) #14	TBL3 (ENSSTOG00000012964) #15	ENSSTOG00000023350 #16	ENSSTOG00000012944 ##17	NDUFB10 (ENSSTOG00000012938) #18	RPL3L (ENSSTOG00000012921) #19	MSRB1 (ENSSTOG00000034478) #20	HS3ST6 (ENSSTOG00000012919) #21	ENSSTOG00000020433 #22	HAGH (ENSSTOG00000009109) #24	IGFALS (ENSSTOG00000027057) #25	NUBP2 (ENSSTOG00000026670) #26	SPSB3 (ENSSTOG00000021171) #27	EME2 (ENSSTOG00000000961) #28	MRPS34 (ENSSTOG00000021586) #29	NME3 (ENSSTOG00000028986) #30	MAPK8IP3 (ENSSTOG00000003734) #31	JPT2 (ENSSTOG00000003729) #32	ENSSTOG00000025346	CRAMP1 (ENSSTOG00000003675) #33	IFT140 (ENSSTOG00000003636) #34	TMEM204 (ENSSTOG00000021652) #35	TELO2 (ENSSTOG00000003610) #36	PTX4 (ENSSTOG00000003603) #37
Alpin marmot	MODERN SPECIES	28	ENSMMMG00000009812	TSC2 (ENSMMMG00000009837) #7	NTHL1 (ENSMMMG00000010821) #8	NHERF2 (ENSMMMG00000010827) #9	ENSMMMG00000010835	ZNF598 (ENSMMMG00000010846) #11	SYNGR3 (ENSMMMG00000010863) #12	GFER (ENSMMMG00000010878) #13	NOXO1 (ENSMMMG00000010886) #14	RNF151 (ENSMMMG00000010935) #16	RPS2 (ENSMMMG00000010948) ##17	NDUFB10 (ENSMMMG00000010988) #18	RPL3L (ENSMMMG00000011010) #19	MSRB1 (ENSMMMG00000011047) #20	HS3ST6 (ENSMMMG00000011071) #21	ENSMMMG00000011082 #22	FAHD1 (ENSMMMG00000011106) #23	HAGH (ENSMMMG00000011110) #24	IGFALS (ENSMMMG00000011124) #25	NUBP2 (ENSMMMG00000011128) #26	SPSB3 (ENSMMMG00000011143) #27	EME2 (ENSMMMG00000011151) #28	MRPS34 (ENSMMMG00000011168) #29	MAPK8IP3 (ENSMMMG00000011208) #31	JPT2 (ENSMMMG00000015507) #32	CRAMP1 (ENSMMMG00000015511) #33	IFT140 (ENSMMMG00000015580) #34	TMEM204 (ENSMMMG00000015619) #35	TELO2 (ENSMMMG00000015629) #36	PTX4 (ENSMMMG00000015680) #37	CLCN7 (ENSMMMG00000015689)
Eurasian red squirrel	MODERN SPECIES	9	RAB26 (ENSSVLG00005023508)	TSC2 (ENSSVLG00005020810) #7	NTHL1 (ENSSVLG00005020622) #8	NHERF2 (ENSSVLG00005020506) #9	ENSSVLG00005020465 #10	ZNF598 (ENSSVLG00005020435) #11	SYNGR3 (ENSSVLG00005020383) #12	GFER (ENSSVLG00005020336) #13	NOXO1 (ENSSVLG00005020093) #14	RNF151 (ENSSVLG00005019772) #16	ENSSVLG00005019653 ##17	NDUFB10 (ENSSVLG00005019544) #18	RPL3L (ENSSVLG00005019463) #19	MSRB1 (ENSSVLG00005019321) #20	HS3ST6 (ENSSVLG00005019256) #21	ENSSVLG00005019191 #22	ENSSVLG00005019134 #23	HAGH (ENSSVLG00005018908) #24	IGFALS (ENSSVLG00005018848) #25	NUBP2 (ENSSVLG00005018731) #26	EME2 (ENSSVLG00005018557) #28	MRPS34 (ENSSVLG00005018518) #29	NME3 (ENSSVLG00005018434) #30	MAPK8IP3 (ENSSVLG00005018319) #31	JPT2 (ENSSVLG00005018232) #32	CRAMP1 (ENSSVLG00005018001) #33	TMEM204 (ENSSVLG00005017964) #35	IFT140 (ENSSVLG00005017909) #34	TELO2 (ENSSVLG00005017874) #36	PTX4 (ENSSVLG00005017820) #37	CLCN7 (ENSSVLG00005017491)
Lagomorpha	ANCESTRAL SPECIES	313													ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26
Rabbit	MODERN SPECIES	987													RPL3L (ENSOCUG00000016283) #19	MSRB1 (ENSOCUG00000022831) #20	HS3ST6 (ENSOCUG00000039128) #21	ENSOCUG00000005997 #22	ENSOCUG00000024657 #24
Pika	MODERN SPECIES	1856																ENSOPRG00000004605 #22	FAHD1 (ENSOPRG00000004601) #23	IGFALS (ENSOPRG00000000046) #25	NUBP2 (ENSOPRG00000000045) #26	ENSOPRG00000004587 #24
Tree shrew	MODERN SPECIES	4273																ENSTBEG00000000289 #22	FAHD1 (ENSTBEG00000000251) #23
Primates	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Haplorrhini	ANCESTRAL SPECIES	24	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Simiiformes	ANCESTRAL SPECIES	19	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452.m #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Hominidae	ANCESTRAL SPECIES	9	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.b.a ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452.m #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	24	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452.m #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Homo/Pan group	ANCESTRAL SPECIES	23	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452.m #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Pan	ANCESTRAL SPECIES	28	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00910000146999	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452.m #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Chimpanzee	MODERN SPECIES	7	ENSPTRG00000050693	TSC2 (ENSPTRG00000031311) #7	NTHL1 (ENSPTRG00000007628) #8	NHERF2 (ENSPTRG00000007627) #9	NPW (ENSPTRG00000007626) #10	ZNF598 (ENSPTRG00000007625) #11	SYNGR3 (ENSPTRG00000007624)	GFER (ENSPTRG00000045515) #13	NOXO1 (ENSPTRG00000023021) #14	TBL3 (ENSPTRG00000007621) #15	RNF151 (ENSPTRG00000007620) #16	ENSPTRG00000052871 ##17	NDUFB10 (ENSPTRG00000007618) #18	RPL3L (ENSPTRG00000007617) #19	MSRB1 (ENSPTRG00000024355) #20	MEIOB (ENSPTRG00000007612) #22	FAHD1 (ENSPTRG00000046890) #23	HAGH (ENSPTRG00000007611) #24	IGFALS (ENSPTRG00000007610) #25	NUBP2 (ENSPTRG00000007609) #26	SPSB3 (ENSPTRG00000007608) #27	EME2 (ENSPTRG00000007607) #28	MRPS34 (ENSPTRG00000007606) #29	NME3 (ENSPTRG00000007605) #30	MAPK8IP3 (ENSPTRG00000007603) #31	JPT2 (ENSPTRG00000034459) #32	CRAMP1 (ENSPTRG00000007602) #33	TMEM204 (ENSPTRG00000031314) #35	IFT140 (ENSPTRG00000007600) #34	TELO2 (ENSPTRG00000007596) #36	PTX4 (ENSPTRG00000007595) #37
Bonobo	MODERN SPECIES	7	ENSPPAG00000042887	TSC2 (ENSPPAG00000033353) #7	NTHL1 (ENSPPAG00000003626) #8	NHERF2 (ENSPPAG00000029803) #9	ZNF598 (ENSPPAG00000043798) #11	ENSPPAG00000040928	GFER (ENSPPAG00000019230) #13	ENSPPAG00000030899 #14	TBL3 (ENSPPAG00000041939) #15	RNF151 (ENSPPAG00000035993) #16	ENSPPAG00000028366 ##17	NDUFB10 (ENSPPAG00000040038) #18	RPL3L (ENSPPAG00000039317) #19	ENSPPAG00000031640 #20	HS3ST6 (ENSPPAG00000029952) #21	ENSPPAG00000032337 #22	IGFALS (ENSPPAG00000025910) #25	ENSPPAG00000029613 #26	SPSB3 (ENSPPAG00000023101) #27	EME2 (ENSPPAG00000035754) #28	MRPS34 (ENSPPAG00000033749) #29	NME3 (ENSPPAG00000030073) #30	MAPK8IP3 (ENSPPAG00000034790) #31	JPT2 (ENSPPAG00000034952) #32	CRAMP1 (ENSPPAG00000036103) #33	TMEM204 (ENSPPAG00000033773) #35	IFT140 (ENSPPAG00000041233) #34	TELO2 (ENSPPAG00000031847) #36	PTX4 (ENSPPAG00000012282) #37	CLCN7 (ENSPPAG00000035677)	CCDC154 (ENSPPAG00000039800)
Human	DUPLICATION
Human	MODERN SPECIES	7	TSC2 (ENSG00000103197) #7	NTHL1 (ENSG00000065057) #8	NHERF2 (ENSG00000065054) #9	NPW (ENSG00000183971) #10	ZNF598 (ENSG00000167962) #11	SYNGR3 (ENSG00000127561) #12	GFER (ENSG00000127554) #13	NOXO1 (ENSG00000196408) #14	TBL3 (ENSG00000183751) #15	RNF151 (ENSG00000179580) #16	RPS2 (ENSG00000140988) ##17	NDUFB10 (ENSG00000140990) #18	RPL3L (ENSG00000140986) #19	MSRB1 (ENSG00000198736) #20	HS3ST6 (ENSG00000162040) #21	ENSG00000289722 #22	MEIOB (ENSG00000162039) #22	FAHD1 (ENSG00000180185) #23	HAGH (ENSG00000063854) #24	IGFALS (ENSG00000099769) #25	NUBP2 (ENSG00000095906) #26	SPSB3 (ENSG00000162032) #27	EME2 (ENSG00000197774) #28	MRPS34 (ENSG00000074071) #29	NME3 (ENSG00000103024) #30	MAPK8IP3 (ENSG00000138834) #31	JPT2 (ENSG00000206053) #32	CRAMP1 (ENSG00000007545) #33	TMEM204 (ENSG00000131634) #35	IFT140 (ENSG00000187535) #34	TELO2 (ENSG00000100726) #36
Human	MODERN SPECIES	7	NTHL1 (ENSG00000065057) #8	NHERF2 (ENSG00000065054) #9	NPW (ENSG00000183971) #10	ZNF598 (ENSG00000167962) #11	SYNGR3 (ENSG00000127561) #12	GFER (ENSG00000127554) #13	NOXO1 (ENSG00000196408) #14	TBL3 (ENSG00000183751) #15	RNF151 (ENSG00000179580) #16	RPS2 (ENSG00000140988) ##17	NDUFB10 (ENSG00000140990) #18	RPL3L (ENSG00000140986) #19	MSRB1 (ENSG00000198736) #20	HS3ST6 (ENSG00000162040) #21	ENSG00000289722 #22	MEIOB (ENSG00000162039) #22	FAHD1 (ENSG00000180185) #23	HAGH (ENSG00000063854) #24	IGFALS (ENSG00000099769) #25	NUBP2 (ENSG00000095906) #26	SPSB3 (ENSG00000162032) #27	EME2 (ENSG00000197774) #28	MRPS34 (ENSG00000074071) #29	NME3 (ENSG00000103024) #30	MAPK8IP3 (ENSG00000138834) #31	JPT2 (ENSG00000206053) #32	CRAMP1 (ENSG00000007545) #33	TMEM204 (ENSG00000131634) #35	IFT140 (ENSG00000187535) #34	TELO2 (ENSG00000100726) #36	PTX4 (ENSG00000251692) #37
Gorilla	MODERN SPECIES	7	ENSGGOG00000043551 #7	ENSGGOG00000027370 #7	NTHL1 (ENSGGOG00000023097) #8	ENSGGOG00000005919 #9	ENSGGOG00000008575	ZNF598 (ENSGGOG00000025660) #11	ENSGGOG00000007034 #12	GFER (ENSGGOG00000006835) #13	ENSGGOG00000009392 #14	TBL3 (ENSGGOG00000009378) #15	RPS2 (ENSGGOG00000009371) ##17	NDUFB10 (ENSGGOG00000009367) #18	RPL3L (ENSGGOG00000009364) #19	ENSGGOG00000022794 #20	HS3ST6 (ENSGGOG00000009361) #21	ENSGGOG00000012261 #22	FAHD1 (ENSGGOG00000024697) #23	HAGH (ENSGGOG00000012252) #24	IGFALS (ENSGGOG00000006268) #25	NUBP2 (ENSGGOG00000006254) #26	SPSB3 (ENSGGOG00000006245) #27	EME2 (ENSGGOG00000006238) #28	MRPS34 (ENSGGOG00000006234) #29	NME3 (ENSGGOG00000006229) #30	MAPK8IP3 (ENSGGOG00000006208) #31	JPT2 (ENSGGOG00000006200) #32	CRAMP1 (ENSGGOG00000006181) #33	TMEM204 (ENSGGOG00000005903) #35	IFT140 (ENSGGOG00000005889) #34	TELO2 (ENSGGOG00000005878) #36	PTX4 (ENSGGOG00000005872) #37
Orangutan	MODERN SPECIES	7	ENSPPYG00000006981	GFER (ENSPPYG00000006980) #13	ENSPPYG00000006978 #14	ZNF598 (ENSPPYG00000006982) #11	RNF151 (ENSPPYG00000036334) #16	ENSPPYG00000006975 ##17	ENSPPYG00000031680 #18	ENSPPYG00000006973 #19	ENSPPYG00000006972 #20	TBL3 (ENSPPYG00000006977) #15	ENSPPYG00000030067	NDUFB10 (ENSPPYG00000006974) #18	ENSPPYG00000029764 #19	MSRB1 (ENSPPYG00000041142) #20	HS3ST6 (ENSPPYG00000006971) #21	ENSPPYG00000006968 #22	FAHD1 (ENSPPYG00000037970) #23	HAGH (ENSPPYG00000006966) #24	IGFALS (ENSPPYG00000006965) #25	ENSPPYG00000006964 #26	SPSB3 (ENSPPYG00000006963) #27	EME2 (ENSPPYG00000035411) #28	MRPS34 (ENSPPYG00000006962) #29	NME3 (ENSPPYG00000032952) #30	MAPK8IP3 (ENSPPYG00000006960) #31	JPT2 (ENSPPYG00000006959) #32	CRAMP1 (ENSPPYG00000006958) #33	TMEM204 (ENSPPYG00000006957) #35	IFT140 (ENSPPYG00000006956) #34	TELO2 (ENSPPYG00000006955) #36	PTX4 (ENSPPYG00000035702) #37
Gibbon	MODERN SPECIES	8	TRAF7 (ENSNLEG00000009168)	RAB26 (ENSNLEG00000009155)	ENSNLEG00000027970	TSC2 (ENSNLEG00000009038) #7	NTHL1 (ENSNLEG00000009019) #8	ENSNLEG00000009011 #9	ZNF598 (ENSNLEG00000008983) #11	GFER (ENSNLEG00000008975) #13	NOXO1 (ENSNLEG00000008947) #14	TBL3 (ENSNLEG00000008889) #15	RNF151 (ENSNLEG00000008887) #16	RPS2 (ENSNLEG00000008877) ##17	NDUFB10 (ENSNLEG00000008867) #18	RPL3L (ENSNLEG00000008850) #19	ENSNLEG00000008834 #20	ENSNLEG00000008811 #22	FAHD1 (ENSNLEG00000008809) #23	ENSNLEG00000008791 #24	ENSNLEG00000030061	NUBP2 (ENSNLEG00000008782) #26	SPSB3 (ENSNLEG00000031220) #27	EME2 (ENSNLEG00000008769) #28	MRPS34 (ENSNLEG00000008766) #29	NME3 (ENSNLEG00000008754) #30	MAPK8IP3 (ENSNLEG00000026706) #31	ENSNLEG00000029033	CRAMP1 (ENSNLEG00000008491) #33	IFT140 (ENSNLEG00000008705) #34	TMEM204 (ENSNLEG00000008742) #35	TELO2 (ENSNLEG00000008667) #36	ENSNLEG00000028593 #37
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Macaca	ANCESTRAL SPECIES	8	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Macaca_a	ANCESTRAL SPECIES	25	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.b.a.a.a.a.b.b.b.a
Rhesus	MODERN SPECIES	12	NTHL1 (ENSMMUG00000002807) #8	NHERF2 (ENSMMUG00000002806) #9	NPW (ENSMMUG00000020017) #10	ZNF598 (ENSMMUG00000029265) #11	SYNGR3 (ENSMMUG00000007960) #12	GFER (ENSMMUG00000052399) #13	NOXO1 (ENSMMUG00000007953) #14	TBL3 (ENSMMUG00000007943) #15	RNF151 (ENSMMUG00000062548) #16	RPS2 (ENSMMUG00000029267) ##17	NDUFB10 (ENSMMUG00000057370) #18	RPL3L (ENSMMUG00000007937) #19	MSRB1 (ENSMMUG00000007936) #20	HS3ST6 (ENSMMUG00000063633) #21	ENSMMUG00000055452	MEIOB (ENSMMUG00000000739) #22	FAHD1 (ENSMMUG00000000738) #23	HAGH (ENSMMUG00000000737) #24	IGFALS (ENSMMUG00000018598) #25	NUBP2 (ENSMMUG00000018597) #26	SPSB3 (ENSMMUG00000060350) #27	EME2 (ENSMMUG00000060835) #28	MRPS34 (ENSMMUG00000018594) #29	NME3 (ENSMMUG00000003857) #30	MAPK8IP3 (ENSMMUG00000017496) #31	JPT2 (ENSMMUG00000000979) #32	ENSMMUG00000059063	CRAMP1 (ENSMMUG00000000978) #33	TMEM204 (ENSMMUG00000062198) #35	IFT140 (ENSMMUG00000000044) #34	TELO2 (ENSMMUG00000008119) #36
Crab-eating macaque	MODERN SPECIES	12	RAB26 (ENSMFAG00000045162)	TSC2 (ENSMFAG00000032166) #7	NTHL1 (ENSMFAG00000032174) #8	NHERF2 (ENSMFAG00000044443) #9	ZNF598 (ENSMFAG00000001763) #11	ENSMFAG00000038081	GFER (ENSMFAG00000039787) #13	NOXO1 (ENSMFAG00000037791) #14	TBL3 (ENSMFAG00000030302) #15	RNF151 (ENSMFAG00000035160) #16	ENSMFAG00000002939 ##17	NDUFB10 (ENSMFAG00000000484) #18	RPL3L (ENSMFAG00000039775) #19	HS3ST6 (ENSMFAG00000054823) #21	ENSMFAG00000054955	ENSMFAG00000000726 #22	FAHD1 (ENSMFAG00000037024) #23	HAGH (ENSMFAG00000004030) #24	IGFALS (ENSMFAG00000042039) #25	SPSB3 (ENSMFAG00000031888) #27	NUBP2 (ENSMFAG00000037059) #26	EME2 (ENSMFAG00000026250) #28	MRPS34 (ENSMFAG00000046146) #29	MAPK8IP3 (ENSMFAG00000037276) #31	ENSMFAG00000060156	JPT2 (ENSMFAG00000033861) #32	CRAMP1 (ENSMFAG00000002985) #33	TMEM204 (ENSMFAG00000032333) #35	IFT140 (ENSMFAG00000038575) #34	TELO2 (ENSMFAG00000037116) #36	ENSMFAG00000058884
Pig-tailed macaque	MODERN SPECIES	124	TSC2 (ENSMNEG00000044090) #7	NTHL1 (ENSMNEG00000039538) #8	NHERF2 (ENSMNEG00000044289) #9	NPW (ENSMNEG00000039297) #10	ZNF598 (ENSMNEG00000042621) #11	ENSMNEG00000038105	GFER (ENSMNEG00000044314) #13	TBL3 (ENSMNEG00000032603) #15	NOXO1 (ENSMNEG00000038172) #14	RNF151 (ENSMNEG00000029972) #16	ENSMNEG00000031742	NDUFB10 (ENSMNEG00000004959) #18	RPL3L (ENSMNEG00000029185) #19	ENSMNEG00000041015 #20	HS3ST6 (ENSMNEG00000040903) #21	ENSMNEG00000004327 #22	FAHD1 (ENSMNEG00000042967) #23	HAGH (ENSMNEG00000044613) #24	IGFALS (ENSMNEG00000032413) #25	NUBP2 (ENSMNEG00000042575) #26	SPSB3 (ENSMNEG00000043847) #27	EME2 (ENSMNEG00000028998) #28	MRPS34 (ENSMNEG00000040928) #29	NME3 (ENSMNEG00000016858) #30	MAPK8IP3 (ENSMNEG00000034470) #31	JPT2 (ENSMNEG00000034006) #32	CRAMP1 (ENSMNEG00000032283) #33	IFT140 (ENSMNEG00000001208) #34	TMEM204 (ENSMNEG00000029407) #35	TELO2 (ENSMNEG00000030153) #36	PTX4 (ENSMNEG00000003932) #37
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00910000146999	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cercopithecinae_d	ANCESTRAL SPECIES	65	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00910000146999	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.b.a ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Sooty mangabey	MODERN SPECIES	104	PKD1 (ENSCATG00000032827)	TSC2 (ENSCATG00000037504) #7	NTHL1 (ENSCATG00000040433) #8	NHERF2 (ENSCATG00000015633) #9	ENSCATG00000033752 #10	ZNF598 (ENSCATG00000038825) #11	ENSCATG00000034941	TBL3 (ENSCATG00000031298) #15	NOXO1 (ENSCATG00000040569) #14	RNF151 (ENSCATG00000029626) #16	ENSCATG00000040770 ##17	NDUFB10 (ENSCATG00000020227) #18	RPL3L (ENSCATG00000043808) #19	ENSCATG00000045189 #20	HS3ST6 (ENSCATG00000044878) #21	ENSCATG00000013960 #22	FAHD1 (ENSCATG00000024626) #23	HAGH (ENSCATG00000031808) #24	IGFALS (ENSCATG00000038603) #25	NUBP2 (ENSCATG00000032660) #26	SPSB3 (ENSCATG00000014492) #27	EME2 (ENSCATG00000034726) #28	MRPS34 (ENSCATG00000017392) #29	NME3 (ENSCATG00000031446) #30	MAPK8IP3 (ENSCATG00000037988) #31	JPT2 (ENSCATG00000039325) #32	CRAMP1 (ENSCATG00000039680) #33	IFT140 (ENSCATG00000035856) #34	TMEM204 (ENSCATG00000041448) #35	TELO2 (ENSCATG00000031718) #36	PTX4 (ENSCATG00000041551) #37
Drill	MODERN SPECIES	1516	PKD1 (ENSMLEG00000019007)	TSC2 (ENSMLEG00000038963) #7	NTHL1 (ENSMLEG00000030400) #8	NHERF2 (ENSMLEG00000032076) #9	ENSMLEG00000036754	ZNF598 (ENSMLEG00000029364) #11	GFER (ENSMLEG00000015681) #13	NOXO1 (ENSMLEG00000031943) #14	TBL3 (ENSMLEG00000043359) #15	ENSMLEG00000030812	ENSMLEG00000038670	NDUFB10 (ENSMLEG00000021536) #18	RPL3L (ENSMLEG00000032414) #19	ENSMLEG00000043698 #20	HS3ST6 (ENSMLEG00000026210) #21	ENSMLEG00000035652 #22	FAHD1 (ENSMLEG00000026819) #23	HAGH (ENSMLEG00000042252) #24	IGFALS (ENSMLEG00000040910) #25	NUBP2 (ENSMLEG00000028983) #26	SPSB3 (ENSMLEG00000032836) #27	EME2 (ENSMLEG00000044276) #28	MRPS34 (ENSMLEG00000028354) #29	ENSMLEG00000038547 #30	MAPK8IP3 (ENSMLEG00000034940) #31	JPT2 (ENSMLEG00000030463) #32	CRAMP1 (ENSMLEG00000040080) #33	TMEM204 (ENSMLEG00000040932) #35	IFT140 (ENSMLEG00000035964) #34	TELO2 (ENSMLEG00000035497) #36	PTX4 (ENSMLEG00000042635) #37
Olive baboon	MODERN SPECIES	9	TSC2 (ENSPANG00000015710) #7	NTHL1 (ENSPANG00000016971) #8	NHERF2 (ENSPANG00000024976) #9	NPW (ENSPANG00000041068) #10	ZNF598 (ENSPANG00000024974) #11	ENSPANG00000030289	ENSPANG00000046545 #13	NOXO1 (ENSPANG00000000513) #14	TBL3 (ENSPANG00000007024) #15	RNF151 (ENSPANG00000019234) #16	RPS2 (ENSPANG00000021004) ##17	NDUFB10 (ENSPANG00000008274) #18	RPL3L (ENSPANG00000011106) #19	ENSPANG00000029688 #20	HS3ST6 (ENSPANG00000007025) #21	ENSPANG00000034551 #22	FAHD1 (ENSPANG00000015411) #23	HAGH (ENSPANG00000000459) #24	IGFALS (ENSPANG00000005022) #25	NUBP2 (ENSPANG00000017597) #26	SPSB3 (ENSPANG00000018349) #27	EME2 (ENSPANG00000015752) #28	MRPS34 (ENSPANG00000020905) #29	NME3 (ENSPANG00000017598) #30	MAPK8IP3 (ENSPANG00000018354) #31	JPT2 (ENSPANG00000016521) #32	CRAMP1 (ENSPANG00000017496) #33	IFT140 (ENSPANG00000018206) #34	TMEM204 (ENSPANG00000018087) #35	TELO2 (ENSPANG00000026315) #36	PTX4 (ENSPANG00000021087) #37
Vervet Monkey	MODERN SPECIES	24	TSC2 (ENSCSAG00000011043) #7	NTHL1 (ENSCSAG00000011073) #8	NHERF2 (ENSCSAG00000011087) #9	NPW (ENSCSAG00000011095) #10	ZNF598 (ENSCSAG00000011129) #11	SYNGR3 (ENSCSAG00000011147) #12	GFER (ENSCSAG00000011153) #13	ENSCSAG00000018843	NOXO1 (ENSCSAG00000011176) #14	TBL3 (ENSCSAG00000011191) #15	RNF151 (ENSCSAG00000011197) #16	RPS2 (ENSCSAG00000011216) ##17	NDUFB10 (ENSCSAG00000011226) #18	RPL3L (ENSCSAG00000011232) #19	HS3ST6 (ENSCSAG00000011240) #21	ENSCSAG00000011268 #22	FAHD1 (ENSCSAG00000018842) #23	HAGH (ENSCSAG00000011337) #24	IGFALS (ENSCSAG00000011362) #25	NUBP2 (ENSCSAG00000011369) #26	SPSB3 (ENSCSAG00000011396) #27	EME2 (ENSCSAG00000011426) #28	MRPS34 (ENSCSAG00000011443) #29	NME3 (ENSCSAG00000011458) #30	MAPK8IP3 (ENSCSAG00000011484) #31	JPT2 (ENSCSAG00000011502) #32	CRAMP1 (ENSCSAG00000011519) #33	TMEM204 (ENSCSAG00000011531) #35	IFT140 (ENSCSAG00000011558) #34	TELO2 (ENSCSAG00000011579) #36	PTX4 (ENSCSAG00000011586) #37
Rhinopithecus	ANCESTRAL SPECIES	14	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Golden snub-nosed monkey	MODERN SPECIES	2643	TSC2 (ENSRROG00000043138) #7	NTHL1 (ENSRROG00000038095) #8	NHERF2 (ENSRROG00000040635) #9	ENSRROG00000016296 #10	ZNF598 (ENSRROG00000025953) #11	SYNGR3 (ENSRROG00000013898) #12	GFER (ENSRROG00000039639) #13	NOXO1 (ENSRROG00000031198) #14	TBL3 (ENSRROG00000026697) #15	RNF151 (ENSRROG00000035586) #16	RPS2 (ENSRROG00000035267) ##17	NDUFB10 (ENSRROG00000005315) #18	RPL3L (ENSRROG00000033620) #19	MSRB1 (ENSRROG00000017890) #20	HS3ST6 (ENSRROG00000045261) #21	ENSRROG00000023184 #22	FAHD1 (ENSRROG00000033003) #23	HAGH (ENSRROG00000032851) #24	IGFALS (ENSRROG00000042451) #25	NUBP2 (ENSRROG00000045209) #26	SPSB3 (ENSRROG00000044609) #27	EME2 (ENSRROG00000043980) #28	MRPS34 (ENSRROG00000028689) #29	ENSRROG00000035949 #30	MAPK8IP3 (ENSRROG00000045499) #31	JPT2 (ENSRROG00000025417) #32	CRAMP1 (ENSRROG00000043453) #33	TMEM204 (ENSRROG00000043665) #35	IFT140 (ENSRROG00000015287) #34	TELO2 (ENSRROG00000028637) #36	PTX4 (ENSRROG00000043040) #37
Black snub-nosed monkey	MODERN SPECIES	1929	TSC2 (ENSRBIG00000039722) #7	NTHL1 (ENSRBIG00000042577) #8	NHERF2 (ENSRBIG00000032177) #9	ENSRBIG00000028093 #10	ZNF598 (ENSRBIG00000020769) #11	SYNGR3 (ENSRBIG00000042440) #12	GFER (ENSRBIG00000035198) #13	NOXO1 (ENSRBIG00000043548) #14	TBL3 (ENSRBIG00000032982) #15	RNF151 (ENSRBIG00000030571) #16	RPS2 (ENSRBIG00000036242) ##17	NDUFB10 (ENSRBIG00000044605) #18	RPL3L (ENSRBIG00000028920) #19	ENSRBIG00000044576 #20	HS3ST6 (ENSRBIG00000044265) #21	ENSRBIG00000030178 #22	HAGH (ENSRBIG00000034228) #24	IGFALS (ENSRBIG00000037270) #25	NUBP2 (ENSRBIG00000031416) #26	SPSB3 (ENSRBIG00000039428) #27	EME2 (ENSRBIG00000032429) #28	MRPS34 (ENSRBIG00000030707) #29	NME3 (ENSRBIG00000031631) #30	MAPK8IP3 (ENSRBIG00000044410) #31	JPT2 (ENSRBIG00000041459) #32	CRAMP1 (ENSRBIG00000031863) #33	TMEM204 (ENSRBIG00000033674) #35	IFT140 (ENSRBIG00000040322) #34	TELO2 (ENSRBIG00000038822) #36	PTX4 (ENSRBIG00000027792) #37	CLCN7 (ENSRBIG00000039539)
Platyrrhini	ANCESTRAL SPECIES	32	ENSGT00940000160577	ENSGT00840000129970	ENSGT00950000182846.b.r	ENSGT00390000005678	ENSGT00730000111029	ENSGT00940000155289.C.b	ENSGT00810000125541	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00940000155267.c	ENSGT00940000160374	ENSGT00940000162015	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cebidae	ANCESTRAL SPECIES	16	ENSGT00940000160577	ENSGT00840000129970	ENSGT00950000182846.b.r	ENSGT00390000005678	ENSGT00730000111029	ENSGT00940000155289.C.b	ENSGT00810000125541	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873.d	ENSGT00390000012605	ENSGT00940000155267.c	ENSGT00940000160374	ENSGT00940000162015	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cebidae_a	ANCESTRAL SPECIES	15	ENSGT00940000160577	ENSGT00840000129970	ENSGT00950000182846.b.r	ENSGT00390000005678	ENSGT00730000111029	ENSGT00940000155289.C.b	ENSGT00810000125541	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873.d	ENSGT00390000012605	ENSGT00940000155267.c	ENSGT00940000160374	ENSGT00940000162015	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Bolivian squirrel monkey	MODERN SPECIES	71	ENSSBOG00000015405	E4F1 (ENSSBOG00000035308)	DNASE1L2 (ENSSBOG00000033049)	ECI1 (ENSSBOG00000022989)	RNPS1 (ENSSBOG00000027927)	ABCA3 (ENSSBOG00000027459)	CCNF (ENSSBOG00000033437)	TEDC2 (ENSSBOG00000029495)	NTN3 (ENSSBOG00000026621)	TBC1D24 (ENSSBOG00000029183)	ENSSBOG00000035802	AMDHD2 (ENSSBOG00000022867)	PDPK1 (ENSSBOG00000024665)	KCTD5 (ENSSBOG00000032146)	PRSS27 (ENSSBOG00000026534)	ENSSBOG00000012975 #22	FAHD1 (ENSSBOG00000033711) #23	HAGH (ENSSBOG00000027026) #24	IGFALS (ENSSBOG00000033879) #25	NUBP2 (ENSSBOG00000000048) #26	SPSB3 (ENSSBOG00000031939) #27	EME2 (ENSSBOG00000031994) #28	MRPS34 (ENSSBOG00000022248) #29	NME3 (ENSSBOG00000035930) #30	MAPK8IP3 (ENSSBOG00000032195) #31	JPT2 (ENSSBOG00000021481) #32	CRAMP1 (ENSSBOG00000032950) #33	TMEM204 (ENSSBOG00000023717) #35	IFT140 (ENSSBOG00000021449) #34	TELO2 (ENSSBOG00000031314) #36	PTX4 (ENSSBOG00000024401) #37
Capuchin	MODERN SPECIES	444	E4F1 (ENSCCAG00000035781)	DNASE1L2 (ENSCCAG00000035605)	ECI1 (ENSCCAG00000037540)	RNPS1 (ENSCCAG00000034480)	ABCA3 (ENSCCAG00000037440)	CCNF (ENSCCAG00000025346)	TEDC2 (ENSCCAG00000034443)	NTN3 (ENSCCAG00000016135)	TBC1D24 (ENSCCAG00000033229)	ATP6V0C (ENSCCAG00000035848)	AMDHD2 (ENSCCAG00000025467)	ENSCCAG00000025791	PDPK1 (ENSCCAG00000037062)	KCTD5 (ENSCCAG00000029747)	PRSS27 (ENSCCAG00000033088)	MEIOB (ENSCCAG00000025134) #22	FAHD1 (ENSCCAG00000027433) #23	HAGH (ENSCCAG00000024223) #24	IGFALS (ENSCCAG00000024463) #25	NUBP2 (ENSCCAG00000024752) #26	SPSB3 (ENSCCAG00000028227) #27	EME2 (ENSCCAG00000027956) #28	MRPS34 (ENSCCAG00000021752) #29	NME3 (ENSCCAG00000035080) #30	MAPK8IP3 (ENSCCAG00000026687) #31	JPT2 (ENSCCAG00000025880) #32	CRAMP1 (ENSCCAG00000022072) #33	TMEM204 (ENSCCAG00000022468) #35	IFT140 (ENSCCAG00000019829) #34	TELO2 (ENSCCAG00000023349) #36	PTX4 (ENSCCAG00000014809) #37
Marmoset	MODERN SPECIES	3	PGP (ENSCJAG00000015011)	E4F1 (ENSCJAG00000015000)	DNASE1L2 (ENSCJAG00000014997)	ECI1 (ENSCJAG00000014986)	RNPS1 (ENSCJAG00000014969)	ABCA3 (ENSCJAG00000014934)	CCNF (ENSCJAG00000014784)	TEDC2 (ENSCJAG00000084462)	NTN3 (ENSCJAG00000014914)	TBC1D24 (ENSCJAG00000014910)	ATP6V0C (ENSCJAG00000045810)	AMDHD2 (ENSCJAG00000014876)	PDPK1 (ENSCJAG00000014801)	KCTD5 (ENSCJAG00000042757)	PRSS27 (ENSCJAG00000074570)	ENSCJAG00000014767 #22	FAHD1 (ENSCJAG00000014764) #23	HAGH (ENSCJAG00000014745) #24	MRPS34 (ENSCJAG00000014694) #29	NME3 (ENSCJAG00000014687) #30	MAPK8IP3 (ENSCJAG00000053951) #31	ENSCJAG00000014626 #32	CRAMP1 (ENSCJAG00000014596) #33	TMEM204 (ENSCJAG00000014588) #35	IFT140 (ENSCJAG00000014532) #34	TELO2 (ENSCJAG00000014499) #36	PTX4 (ENSCJAG00000014497) #37	CLCN7 (ENSCJAG00000014423)	CCDC154 (ENSCJAG00000014379)	PERCC1 (ENSCJAG00000038190)	UQCC4 (ENSCJAG00000014406)
Mas night monkey	MODERN SPECIES	1162	PGP (ENSANAG00000037682)	E4F1 (ENSANAG00000038202)	DNASE1L2 (ENSANAG00000024478)	ECI1 (ENSANAG00000026702)	RNPS1 (ENSANAG00000028802)	ABCA3 (ENSANAG00000035802)	CCNF (ENSANAG00000030742)	TEDC2 (ENSANAG00000027439)	NTN3 (ENSANAG00000028509)	TBC1D24 (ENSANAG00000028671)	ENSANAG00000030338	AMDHD2 (ENSANAG00000031967)	ENSANAG00000020510	KCTD5 (ENSANAG00000031560)	PRSS27 (ENSANAG00000032865)	ENSANAG00000033819 #22	ENSANAG00000034768 #23	HAGH (ENSANAG00000020735) #24	ENSANAG00000019351 #23	IGFALS (ENSANAG00000026151) #25	NUBP2 (ENSANAG00000026789) #26	SPSB3 (ENSANAG00000028700) #27	MAPK8IP3 (ENSANAG00000035325) #31	MRPS34 (ENSANAG00000021904) #29	NME3 (ENSANAG00000023706) #30	JPT2 (ENSANAG00000026079) #32	CRAMP1 (ENSANAG00000027271) #33	IFT140 (ENSANAG00000033226) #34	TMEM204 (ENSANAG00000034748) #35	TELO2 (ENSANAG00000035480) #36	PTX4 (ENSANAG00000035628) #37
Tarsier	MODERN SPECIES	6596														MSRB1 (ENSTSYG00000031778) #20	HS3ST6 (ENSTSYG00000026580) #21	ENSTSYG00000007030 #22	FAHD1 (ENSTSYG00000007002) #23	HAGH (ENSTSYG00000006985) #24	IGFALS (ENSTSYG00000034727) #25	NUBP2 (ENSTSYG00000033549) #26	SPSB3 (ENSTSYG00000033584) #27	EME2 (ENSTSYG00000030413) #28	MRPS34 (ENSTSYG00000031660) #29	MAPK8IP3 (ENSTSYG00000025647) #31	JPT2 (ENSTSYG00000002923) #32	CRAMP1 (ENSTSYG00000002901) #33	TMEM204 (ENSTSYG00000006646) #35	IFT140 (ENSTSYG00000006588) #34	TELO2 (ENSTSYG00000014612) #36	PTX4 (ENSTSYG00000033919) #37	CLCN7 (ENSTSYG00000033315)
Strepsirrhini	ANCESTRAL SPECIES	24	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Lemuriformes	ANCESTRAL SPECIES	27	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Mouse lemur	MODERN SPECIES	8	NTHL1 (ENSMICG00000035043) #8	NHERF2 (ENSMICG00000015931) #9	NPW (ENSMICG00000034106) #10	ZNF598 (ENSMICG00000012834) #11	SYNGR3 (ENSMICG00000031975) #12	GFER (ENSMICG00000027083) #13	NOXO1 (ENSMICG00000012809) #14	TBL3 (ENSMICG00000012787) #15	RNF151 (ENSMICG00000012775) #16	ENSMICG00000012765 ##17	NDUFB10 (ENSMICG00000027466) #18	RPL3L (ENSMICG00000012746) #19	MSRB1 (ENSMICG00000011349) #20	HS3ST6 (ENSMICG00000011342) #21	ENSMICG00000037918	ENSMICG00000011322 #22	FAHD1 (ENSMICG00000002137) #23	HAGH (ENSMICG00000002132) #24	IGFALS (ENSMICG00000002129) #25	NUBP2 (ENSMICG00000002126) #26	SPSB3 (ENSMICG00000002122) #27	MRPS34 (ENSMICG00000031095) #29	NME3 (ENSMICG00000030545) #30	MAPK8IP3 (ENSMICG00000002091) #31	JPT2 (ENSMICG00000026714) #32	CRAMP1 (ENSMICG00000014094) #33	TMEM204 (ENSMICG00000042845) #35	IFT140 (ENSMICG00000014051) #34	TELO2 (ENSMICG00000000220) #36	PTX4 (ENSMICG00000000217) #37	CLCN7 (ENSMICG00000013205)
Lemuriformes_a	ANCESTRAL SPECIES	23	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652.i #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Greater bamboo lemur	MODERN SPECIES	390	NTHL1 (ENSPSMG00000024110) #8	NHERF2 (ENSPSMG00000024127) #9	NPW (ENSPSMG00000024133) #10	ZNF598 (ENSPSMG00000024145) #11	SYNGR3 (ENSPSMG00000024155) #12	GFER (ENSPSMG00000024165) #13	NOXO1 (ENSPSMG00000024168) #14	ENSPSMG00000024173	ENSPSMG00000024178 #16	RPS2 (ENSPSMG00000024201) ##17	NDUFB10 (ENSPSMG00000024222) #18	RPL3L (ENSPSMG00000024237) #19	MSRB1 (ENSPSMG00000024244) #20	HS3ST6 (ENSPSMG00000024249) #21	ENSPSMG00000024257	ENSPSMG00000024276 #22	FAHD1 (ENSPSMG00000024285) #23	HAGH (ENSPSMG00000024311) #24	ENSPSMG00000024318	IGFALS (ENSPSMG00000024321) #25	NUBP2 (ENSPSMG00000024328) #26	SPSB3 (ENSPSMG00000024361) #27	EME2 (ENSPSMG00000024369) #28	MRPS34 (ENSPSMG00000024379) #29	NME3 (ENSPSMG00000024387) #30	MAPK8IP3 (ENSPSMG00000024595) #31	JPT2 (ENSPSMG00000024685) #32	CRAMP1 (ENSPSMG00000024711) #33	IFT140 (ENSPSMG00000024730) #34	TMEM204 (ENSPSMG00000024736) #35	TELO2 (ENSPSMG00000024784) #36
Coquerels sifaka	MODERN SPECIES	384	TSC2 (ENSPCOG00000019871) #7	NTHL1 (ENSPCOG00000019236) #8	NHERF2 (ENSPCOG00000004586) #9	NPW (ENSPCOG00000010961) #10	ZNF598 (ENSPCOG00000021012) #11	SYNGR3 (ENSPCOG00000021755) #12	GFER (ENSPCOG00000014504) #13	NOXO1 (ENSPCOG00000025960) #14	TBL3 (ENSPCOG00000019749) #15	RNF151 (ENSPCOG00000015191) #16	ENSPCOG00000028664 ##17	NDUFB10 (ENSPCOG00000022126) #18	RPL3L (ENSPCOG00000014695) #19	MSRB1 (ENSPCOG00000027095) #20	HS3ST6 (ENSPCOG00000027953) #21	ENSPCOG00000002540 #22	FAHD1 (ENSPCOG00000007621) #23	HAGH (ENSPCOG00000026794) #24	IGFALS (ENSPCOG00000012687) #25	NUBP2 (ENSPCOG00000018600) #26	SPSB3 (ENSPCOG00000015385) #27	EME2 (ENSPCOG00000021099) #28	MRPS34 (ENSPCOG00000026798) #29	NME3 (ENSPCOG00000019193) #30	MAPK8IP3 (ENSPCOG00000021523) #31	ENSPCOG00000028105 #32	CRAMP1 (ENSPCOG00000004847) #33	TMEM204 (ENSPCOG00000027514) #35	IFT140 (ENSPCOG00000023133) #34	TELO2 (ENSPCOG00000022795) #36	PTX4 (ENSPCOG00000025173) #37
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001723 #22
Common shrew	MODERN SPECIES	4193																ENSSARG00000011762 #22
Hedgehog	MODERN SPECIES	5386																ENSEEUG00000014622 #22
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Suina	ANCESTRAL SPECIES	28	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A.db #34	ENSGT00390000015528 #35	ENSGT00940000153417.A.eb #34	ENSGT00390000006698 #36
Chacoan peccary	MODERN SPECIES	848				NHERF2 (ENSCWAG00000021621) #9	NPW (ENSCWAG00000021629) #10	ZNF598 (ENSCWAG00000021631) #11	SYNGR3 (ENSCWAG00000009366) #12	GFER (ENSCWAG00000009406) #13	NOXO1 (ENSCWAG00000009428) #14	RNF151 (ENSCWAG00000009774) #16	ENSCWAG00000009812 ##17	NDUFB10 (ENSCWAG00000009923) #18	RPL3L (ENSCWAG00000009981) #19	MSRB1 (ENSCWAG00000010076) #20	HS3ST6 (ENSCWAG00000010100) #21	ENSCWAG00000010137 #22	FAHD1 (ENSCWAG00000010358) #23	HAGH (ENSCWAG00000010381) #24	IGFALS (ENSCWAG00000010469) #25	NUBP2 (ENSCWAG00000010505) #26	SPSB3 (ENSCWAG00000010677) #27	EME2 (ENSCWAG00000010752) #28	MRPS34 (ENSCWAG00000010813) #29	NME3 (ENSCWAG00000010828) #30	ENSCWAG00000010875 #31
Pig	MODERN SPECIES	11	TSC2 (ENSSSCG00000008040) #7	NTHL1 (ENSSSCG00000008039) #8	NHERF2 (ENSSSCG00000008038) #9	NPW (ENSSSCG00000048627) #10	ZNF598 (ENSSSCG00000023400) #11	SYNGR3 (ENSSSCG00000008036) #12	ENSSSCG00000008035 #13	NOXO1 (ENSSSCG00000008034) #14	TBL3 (ENSSSCG00000037686) #15	RNF151 (ENSSSCG00000034728) #16	ENSSSCG00000033697 #17	NDUFB10 (ENSSSCG00000030328) #18	RPL3L (ENSSSCG00000032657) #19	MSRB1 (ENSSSCG00000032932) #20	HS3ST6 (ENSSSCG00000031216) #21	ENSSSCG00000025711 #22	ENSSSCG00000008012 #24	FAHD1 (ENSSSCG00000039715) #23	IGFALS (ENSSSCG00000008013) #25	NUBP2 (ENSSSCG00000008014) #26	SPSB3 (ENSSSCG00000039024) #27	EME2 (ENSSSCG00000021467) #28	MRPS34 (ENSSSCG00000008016) #29	NME3 (ENSSSCG00000008017) #30	MAPK8IP3 (ENSSSCG00000008018) #31	JPT2 (ENSSSCG00000008019) #32	CRAMP1 (ENSSSCG00000008026) #33	IFT140 (ENSSSCG00000008020) #34	TMEM204 (ENSSSCG00000008021) #35	TELO2 (ENSSSCG00000008022) #36	PTX4 (ENSSSCG00000037262) #37
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cetacea	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.l #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.l #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.l #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b.l #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Narwhal	MODERN SPECIES	299	TSC2 (ENSMMNG00015005139) #7	NTHL1 (ENSMMNG00015004918) #8	NHERF2 (ENSMMNG00015004903) #9	NPW (ENSMMNG00015004892) #10	ZNF598 (ENSMMNG00015004887) #11	SYNGR3 (ENSMMNG00015004877) #12	GFER (ENSMMNG00015003991) #13	NOXO1 (ENSMMNG00015003977) #14	TBL3 (ENSMMNG00015003946) #15	RNF151 (ENSMMNG00015003919) #16	ENSMMNG00015003862 #17	NDUFB10 (ENSMMNG00015003819) #18	RPL3L (ENSMMNG00015003791) #19	MSRB1 (ENSMMNG00015003761) #20	HS3ST6 (ENSMMNG00015003744) #21	ENSMMNG00015003718 #22	FAHD1 (ENSMMNG00015003677) #23	HAGH (ENSMMNG00015003649) #24	IGFALS (ENSMMNG00015003621) #25	NUBP2 (ENSMMNG00015003598) #26	SPSB3 (ENSMMNG00015003567) #27	ENSMMNG00015003543	MRPS34 (ENSMMNG00015003531) #29	NME3 (ENSMMNG00015003514) #30	ENSMMNG00015003486 #31	JPT2 (ENSMMNG00015003456) #32	CRAMP1 (ENSMMNG00015003411) #33	TMEM204 (ENSMMNG00015003375) #35	IFT140 (ENSMMNG00015003282) #34	TELO2 (ENSMMNG00015003226) #36	PTX4 (ENSMMNG00015003188) #37
Beluga whale	MODERN SPECIES	48	TSC2 (ENSDLEG00000007869) #7	NTHL1 (ENSDLEG00000007751) #8	NHERF2 (ENSDLEG00000007744) #9	NPW (ENSDLEG00000007742) #10	ZNF598 (ENSDLEG00000007731) #11	SYNGR3 (ENSDLEG00000007709) #12	ENSDLEG00000007706 #13	NOXO1 (ENSDLEG00000007696) #14	TBL3 (ENSDLEG00000007683) #15	ENSDLEG00000007673 #16	RPS2 (ENSDLEG00000007664) #17	NDUFB10 (ENSDLEG00000007659) #18	RPL3L (ENSDLEG00000007645) #19	MSRB1 (ENSDLEG00000007639) #20	HS3ST6 (ENSDLEG00000007636) #21	MEIOB (ENSDLEG00000007627) #22	FAHD1 (ENSDLEG00000007618) #23	HAGH (ENSDLEG00000007559) #24	IGFALS (ENSDLEG00000007530) #25	ENSDLEG00000007525 #26	SPSB3 (ENSDLEG00000007517) #27	MRPS34 (ENSDLEG00000007513) #29	NME3 (ENSDLEG00000007506) #30	MAPK8IP3 (ENSDLEG00000007432) #31	JPT2 (ENSDLEG00000007393) #32	CRAMP1 (ENSDLEG00000007347) #33	TMEM204 (ENSDLEG00000007342) #35	IFT140 (ENSDLEG00000007323) #34	TELO2 (ENSDLEG00000007302) #36	PTX4 (ENSDLEG00000007294) #37	CLCN7 (ENSDLEG00000007278)
Vaquita	MODERN SPECIES	6	TSC2 (ENSPSNG00000012396) #7	NTHL1 (ENSPSNG00000012170) #8	NHERF2 (ENSPSNG00000011996) #9	NPW (ENSPSNG00000011925) #10	ZNF598 (ENSPSNG00000011838) #11	SYNGR3 (ENSPSNG00000011768) #12	GFER (ENSPSNG00000011731) #13	NOXO1 (ENSPSNG00000011544) #14	TBL3 (ENSPSNG00000011502) #15	RNF151 (ENSPSNG00000011420) #16	RPS2 (ENSPSNG00000011290) #17	NDUFB10 (ENSPSNG00000011191) #18	RPL3L (ENSPSNG00000011070) #19	MSRB1 (ENSPSNG00000011031) #20	HS3ST6 (ENSPSNG00000011004) #21	ENSPSNG00000010896 #22	FAHD1 (ENSPSNG00000010819) #23	HAGH (ENSPSNG00000010692) #24	IGFALS (ENSPSNG00000010635) #25	NUBP2 (ENSPSNG00000010556) #26	SPSB3 (ENSPSNG00000010505) #27	MRPS34 (ENSPSNG00000010465) #29	NME3 (ENSPSNG00000010342) #30	MAPK8IP3 (ENSPSNG00000010221) #31	JPT2 (ENSPSNG00000010117) #32	CRAMP1 (ENSPSNG00000009750) #33	TMEM204 (ENSPSNG00000009646) #35	IFT140 (ENSPSNG00000009483) #34	TELO2 (ENSPSNG00000009395) #36	ENSPSNG00000009353	CLCN7 (ENSPSNG00000009258)
Dolphin	MODERN SPECIES	2804					ZNF598 (ENSTTRG00000011402) #11	SYNGR3 (ENSTTRG00000011401) #12	GFER (ENSTTRG00000011400) #13	NOXO1 (ENSTTRG00000011396) #14	TBL3 (ENSTTRG00000011395) #15	RNF151 (ENSTTRG00000011394) #16	RPS2 (ENSTTRG00000011393) #17	NDUFB10 (ENSTTRG00000011392) #18	RPL3L (ENSTTRG00000011391) #19	ENSTTRG00000011390 #20	HS3ST6 (ENSTTRG00000011389) #21	ENSTTRG00000011388 #22	FAHD1 (ENSTTRG00000011387) #23	HAGH (ENSTTRG00000011386) #24	IGFALS (ENSTTRG00000011385) #25	NUBP2 (ENSTTRG00000011384) #26	SPSB3 (ENSTTRG00000011383) #27	EME2 (ENSTTRG00000011382) #28	MRPS34 (ENSTTRG00000011381) #29	NME3 (ENSTTRG00000011380) #30	MAPK8IP3 (ENSTTRG00000011379) #31	HN1L (ENSTTRG00000011377) #32	CRAMP1 (ENSTTRG00000011376) #33	ENSTTRG00000011369
Sperm whale	MODERN SPECIES	5	PRSS21 (ENSPCTG00005019835)	PRSS22 (ENSPCTG00005019794)	PRSS27 (ENSPCTG00005019744)	KCTD5 (ENSPCTG00005019702)	PDPK1 (ENSPCTG00005019600)	TBC1D24 (ENSPCTG00005019491)	ENSPCTG00005019079	ENSPCTG00005018996	TSC2 (ENSPCTG00005012251) #7	NTHL1 (ENSPCTG00005011802) #8	SLC9A3R2 (ENSPCTG00005011692) #9	NPW (ENSPCTG00005011620) #10	RAB26 (ENSPCTG00005011507)	ENSPCTG00005011482	HS3ST6 (ENSPCTG00005011453) #21	MEIOB (ENSPCTG00005011338) #22	FAHD1 (ENSPCTG00005011291) #23	HAGH (ENSPCTG00005011104) #24	IGFALS (ENSPCTG00005011059) #25	NUBP2 (ENSPCTG00005010986) #26	SPSB3 (ENSPCTG00005010946) #27	MRPS34 (ENSPCTG00005010898) #29	NME3 (ENSPCTG00005010844) #30	ENSPCTG00005010683 #32	CRAMP1 (ENSPCTG00005009410) #33	ENSPCTG00005009272 #34	TMEM204 (ENSPCTG00005009234) #35	ENSPCTG00005009170 #34	TELO2 (ENSPCTG00005009101) #36	ENSPCTG00005009043	CLCN7 (ENSPCTG00005008592)
Blue whale	MODERN SPECIES	6	TSC2 (ENSBMSG00010011197) #7	NTHL1 (ENSBMSG00010011060) #8	NHERF2 (ENSBMSG00010011027) #9	NPW (ENSBMSG00010011009) #10	ENSBMSG00010011003	ENSBMSG00010010978	GFER (ENSBMSG00010010965) #13	NOXO1 (ENSBMSG00010010936) #14	TBL3 (ENSBMSG00010010856) #15	RNF151 (ENSBMSG00010010820) #16	ENSBMSG00010010763 ##17	NDUFB10 (ENSBMSG00010010734) #18	RPL3L (ENSBMSG00010010716) #19	MSRB1 (ENSBMSG00010010701) #20	HS3ST6 (ENSBMSG00010010685) #21	ENSBMSG00010010669 #22	FAHD1 (ENSBMSG00010010608) #23	HAGH (ENSBMSG00010010591) #24	IGFALS (ENSBMSG00010010573) #25	NUBP2 (ENSBMSG00010010561) #26	SPSB3 (ENSBMSG00010010546) #27	MRPS34 (ENSBMSG00010010537) #29	NME3 (ENSBMSG00010010525) #30	ENSBMSG00010010504 #31	JPT2 (ENSBMSG00010010484) #32	CRAMP1 (ENSBMSG00010010410) #33	TMEM204 (ENSBMSG00010010376) #35	IFT140 (ENSBMSG00010010364) #34	TELO2 (ENSBMSG00010010337) #36	CLCN7 (ENSBMSG00010010255)	PERCC1 (ENSBMSG00010010139)
Pecora	ANCESTRAL SPECIES	10	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00940000153095.g.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Percora_a	ANCESTRAL SPECIES	9	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Bovidae	ANCESTRAL SPECIES	11	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00940000153095.g.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Caprinae	ANCESTRAL SPECIES	7	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Rambouillet Sheep	MODERN SPECIES	16	TSC2 (ENSOARG00020014978) #7	NTHL1 (ENSOARG00020014040) #8	NHERF2 (ENSOARG00020013748) #9	ENSOARG00020013690 #10	ZNF598 (ENSOARG00020013567) #11	SYNGR3 (ENSOARG00020013539) #12	GFER (ENSOARG00020026345) #13	NOXO1 (ENSOARG00020026343) #14	TBL3 (ENSOARG00020026339) #15	RNF151 (ENSOARG00020026336) #16	ENSOARG00020026326 ##17	NDUFB10 (ENSOARG00020026321) #18	RPL3L (ENSOARG00020026318) #19	MSRB1 (ENSOARG00020026316) #20	HS3ST6 (ENSOARG00020026315) #21	ENSOARG00020026311 #22	FAHD1 (ENSOARG00020026309) #23	HAGH (ENSOARG00020026306) #24	IGFALS (ENSOARG00020026302) #25	NUBP2 (ENSOARG00020026299) #26	SPSB3 (ENSOARG00020026298) #27	EME2 (ENSOARG00020026295) #28	MRPS34 (ENSOARG00020026293) #29	NME3 (ENSOARG00020026291) #30	MAPK8IP3 (ENSOARG00020026283) #31	JPT2 (ENSOARG00020026280) #32	CRAMP1 (ENSOARG00020026270) #33	TMEM204 (ENSOARG00020026266) #35	IFT140 (ENSOARG00020026264) #34	TELO2 (ENSOARG00020026262) #36	PTX4 (ENSOARG00020026260) #37
Goat	MODERN SPECIES	17	PKD1 (ENSCHIG00000016351)	TSC2 (ENSCHIG00000014230) #7	NTHL1 (ENSCHIG00000014718) #8	NHERF2 (ENSCHIG00000016518) #9	ZNF598 (ENSCHIG00000013018) #11	SYNGR3 (ENSCHIG00000016715) #12	GFER (ENSCHIG00000006049) #13	NOXO1 (ENSCHIG00000019635) #14	TBL3 (ENSCHIG00000007747) #15	RNF151 (ENSCHIG00000015860) #16	ENSCHIG00000022194 #17	NDUFB10 (ENSCHIG00000017852) #18	MSRB1 (ENSCHIG00000018373) #20	RPL3L (ENSCHIG00000020352) #19	HS3ST6 (ENSCHIG00000019888) #21	ENSCHIG00000013357 #22	FAHD1 (ENSCHIG00000007917) #23	HAGH (ENSCHIG00000022722) #24	IGFALS (ENSCHIG00000005524) #25	NUBP2 (ENSCHIG00000024194) #26	SPSB3 (ENSCHIG00000024292) #27	MRPS34 (ENSCHIG00000026940) #29	NME3 (ENSCHIG00000020916) #30	MAPK8IP3 (ENSCHIG00000020649) #31	JPT2 (ENSCHIG00000009778) #32	CRAMP1 (ENSCHIG00000001484) #33	TMEM204 (ENSCHIG00000008739) #35	IFT140 (ENSCHIG00000017137) #34	TELO2 (ENSCHIG00000012866) #36	PTX4 (ENSCHIG00000010150) #37	CLCN7 (ENSCHIG00000016124)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00990000213154	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00940000153095.g.b.b.e ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Bos	ANCESTRAL SPECIES	9	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00940000153095.g.b.b.e ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Bos_a	ANCESTRAL SPECIES	13	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.b.e ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Wild yak	MODERN SPECIES	26						ENSBMUG00000017742	GFER (ENSBMUG00000017765) #13	NOXO1 (ENSBMUG00000017821) #14	TBL3 (ENSBMUG00000017851) #15	RNF151 (ENSBMUG00000017871) #16	ENSBMUG00000017908 ##17	NDUFB10 (ENSBMUG00000017948) #18	RPL3L (ENSBMUG00000017984) #19	MSRB1 (ENSBMUG00000018003) #20	HS3ST6 (ENSBMUG00000018022) #21	ENSBMUG00000018062 #22	FAHD1 (ENSBMUG00000018088) #23	HAGH (ENSBMUG00000018096) #24	IGFALS (ENSBMUG00000018107) #25	NUBP2 (ENSBMUG00000018133) #26	SPSB3 (ENSBMUG00000018145) #27	EME2 (ENSBMUG00000018170) #28	MRPS34 (ENSBMUG00000018185) #29	ENSBMUG00000018193 #30	MAPK8IP3 (ENSBMUG00000020161) #31	JPT2 (ENSBMUG00000021647) #32	CRAMP1 (ENSBMUG00000021918) #33	IFT140 (ENSBMUG00000022034) #34	TMEM204 (ENSBMUG00000022060) #35	TELO2 (ENSBMUG00000022079) #36	ENSBMUG00000022086
Domestic yak	MODERN SPECIES	18	TSC2 (ENSBGRG00000021872) #7	ENSBGRG00000025853 #8	NHERF2 (ENSBGRG00000025867) #9	ENSBGRG00000025882 #10	ZNF598 (ENSBGRG00000025889) #11	SYNGR3 (ENSBGRG00000025907) #12	GFER (ENSBGRG00000025909) #13	NOXO1 (ENSBGRG00000025916) #14	TBL3 (ENSBGRG00000025925) #15	RNF151 (ENSBGRG00000025932) #16	ENSBGRG00000025950 ##17	NDUFB10 (ENSBGRG00000025973) #18	RPL3L (ENSBGRG00000026001) #19	MSRB1 (ENSBGRG00000026025) #20	HS3ST6 (ENSBGRG00000026037) #21	ENSBGRG00000026058 #22	FAHD1 (ENSBGRG00000026099) #23	HAGH (ENSBGRG00000026102) #24	IGFALS (ENSBGRG00000026120) #25	NUBP2 (ENSBGRG00000026125) #26	SPSB3 (ENSBGRG00000026135) #27	EME2 (ENSBGRG00000026143) #28	MRPS34 (ENSBGRG00000026152) #29	NME3 (ENSBGRG00000026159) #30	ENSBGRG00000026167 #31	JPT2 (ENSBGRG00000026177) #32	CRAMP1 (ENSBGRG00000026195) #33	ENSBGRG00000026261 #34	TMEM204 (ENSBGRG00000026263) #35	TELO2 (ENSBGRG00000026295) #36	PTX4 (ENSBGRG00000026360) #37
Bos_b	ANCESTRAL SPECIES	6	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Cow	MODERN SPECIES	17	TSC2 (ENSBTAG00000020617) #7	NTHL1 (ENSBTAG00000006272) #8	NHERF2 (ENSBTAG00000013479) #9	ENSBTAG00000054368 #10	ZNF598 (ENSBTAG00000001023) #11	SYNGR3 (ENSBTAG00000008504) #12	GFER (ENSBTAG00000017631) #13	NOXO1 (ENSBTAG00000020369) #14	TBL3 (ENSBTAG00000020366) #15	RNF151 (ENSBTAG00000009536) #16	RPS2 (ENSBTAG00000009535) #17	NDUFB10 (ENSBTAG00000009534) #18	RPL3L (ENSBTAG00000009533) #19	MSRB1 (ENSBTAG00000049306) #20	HS3ST6 (ENSBTAG00000019249) #21	MEIOB (ENSBTAG00000020001) #22	FAHD1 (ENSBTAG00000033015) #23	HAGH (ENSBTAG00000019998) #24	IGFALS (ENSBTAG00000033299) #25	NUBP2 (ENSBTAG00000016561) #26	SPSB3 (ENSBTAG00000016558) #27	EME2 (ENSBTAG00000016553) #28	MRPS34 (ENSBTAG00000026415) #29	NME3 (ENSBTAG00000016552) #30	ENSBTAG00000052060	MAPK8IP3 (ENSBTAG00000002211) #31	JPT2 (ENSBTAG00000002209) #32	CRAMP1 (ENSBTAG00000002202) #33	TMEM204 (ENSBTAG00000007246) #35	IFT140 (ENSBTAG00000007245) #34	TELO2 (ENSBTAG00000019086) #36
Hybrid Bos Indicus	MODERN SPECIES	17	ENSBIXG00005030106	NTHL1 (ENSBIXG00005030114) #8	NHERF2 (ENSBIXG00005030135) #9	ENSBIXG00005030154 #10	ZNF598 (ENSBIXG00005030165) #11	ENSBIXG00005030188 #12	ENSBIXG00005030201 #13	TBL3 (ENSBIXG00005030213) #15	NOXO1 (ENSBIXG00005030231) #14	RNF151 (ENSBIXG00005030248) #16	ENSBIXG00005030271 ##17	NDUFB10 (ENSBIXG00005030305) #18	RPL3L (ENSBIXG00005030313) #19	MSRB1 (ENSBIXG00005030323) #20	HS3ST6 (ENSBIXG00005005277) #21	ENSBIXG00005005270 #22	FAHD1 (ENSBIXG00005029225) #23	HAGH (ENSBIXG00005029215) #24	IGFALS (ENSBIXG00005001646) #25	EME2 (ENSBIXG00005029199) #28	SPSB3 (ENSBIXG00005001778) #27	ENSBIXG00005001802 #29	NME3 (ENSBIXG00005005200) #30	MAPK8IP3 (ENSBIXG00005029132) #31	ENSBIXG00005029057	JPT2 (ENSBIXG00005005130) #32	ENSBIXG00005029033	CRAMP1 (ENSBIXG00005029023) #33	IFT140 (ENSBIXG00005002075) #34	TMEM204 (ENSBIXG00005002103) #35	TELO2 (ENSBIXG00005005091) #36
American bison	MODERN SPECIES	2533																ENSBBBG00000016273 #22	FAHD1 (ENSBBBG00000004028) #23	ENSBBBG00000016234 #24
Siberian musk deer	MODERN SPECIES		TSC2 (ENSMMSG00000000618) #7	NTHL1 (ENSMMSG00000000870) #8	NHERF2 (ENSMMSG00000000918) #9	NPW (ENSMMSG00000000978) #10	ZNF598 (ENSMMSG00000000995) #11	ENSMMSG00000001029	GFER (ENSMMSG00000001094) #13	NOXO1 (ENSMMSG00000001117) #14	TBL3 (ENSMMSG00000001169) #15	RNF151 (ENSMMSG00000001215) #16	ENSMMSG00000001250 ##17	NDUFB10 (ENSMMSG00000001294) #18	RPL3L (ENSMMSG00000001316) #19	MSRB1 (ENSMMSG00000001336) #20	HS3ST6 (ENSMMSG00000001346) #21	ENSMMSG00000001365 #22	FAHD1 (ENSMMSG00000001429) #23	HAGH (ENSMMSG00000001440) #24	IGFALS (ENSMMSG00000001466) #25	NUBP2 (ENSMMSG00000001476) #26	SPSB3 (ENSMMSG00000001495) #27	EME2 (ENSMMSG00000001510) #28	ENSMMSG00000001526 #29	NME3 (ENSMMSG00000001535) #30	MAPK8IP3 (ENSMMSG00000001572) #31	ENSMMSG00000001612	JPT2 (ENSMMSG00000001637) #32	CRAMP1 (ENSMMSG00000001672) #33	IFT140 (ENSMMSG00000001736) #34	TMEM204 (ENSMMSG00000001793) #35	TELO2 (ENSMMSG00000001817) #36
Yarkand deer	MODERN SPECIES	1	TSC2 (ENSCHYG00000002897) #7	NTHL1 (ENSCHYG00000002795) #8	NHERF2 (ENSCHYG00000002724) #9	ENSCHYG00000002707 #10	ZNF598 (ENSCHYG00000002665) #11	SYNGR3 (ENSCHYG00000002600) #12	GFER (ENSCHYG00000002589) #13	NOXO1 (ENSCHYG00000002547) #14	TBL3 (ENSCHYG00000002506) #15	RNF151 (ENSCHYG00000002494) #16	ENSCHYG00000002454 ##17	NDUFB10 (ENSCHYG00000002424) #18	RPL3L (ENSCHYG00000002392) #19	MSRB1 (ENSCHYG00000002367) #20	HS3ST6 (ENSCHYG00000002357) #21	ENSCHYG00000002342 #22	FAHD1 (ENSCHYG00000002322) #23	HAGH (ENSCHYG00000002161) #24	IGFALS (ENSCHYG00000002142) #25	NUBP2 (ENSCHYG00000002104) #26	ENSCHYG00000002081 #27	ENSCHYG00000002065 #28	MRPS34 (ENSCHYG00000002055) #29	NME3 (ENSCHYG00000002029) #30	ENSCHYG00000002013 #31	ENSCHYG00000002004 #31	ENSCHYG00000001980 #32	CRAMP1 (ENSCHYG00000001817) #33	ENSCHYG00000001757 #34	ENSCHYG00000001737 #35	ENSCHYG00000001722 #34
Camelidae	ANCESTRAL SPECIES	33	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Arabian camel	MODERN SPECIES	41	TSC2 (ENSCDRG00005013847) #7	NTHL1 (ENSCDRG00005013746) #8	NHERF2 (ENSCDRG00005013637) #9	NPW (ENSCDRG00005013571) #10	ZNF598 (ENSCDRG00005013508) #11	SYNGR3 (ENSCDRG00005013426) #12	GFER (ENSCDRG00005013367) #13	NOXO1 (ENSCDRG00005013253) #14	TBL3 (ENSCDRG00005013168) #15	RNF151 (ENSCDRG00005013092) #16	RPS2 (ENSCDRG00005012917) #17	NDUFB10 (ENSCDRG00005012823) #18	RPL3L (ENSCDRG00005012772) #19	MSRB1 (ENSCDRG00005012709) #20	HS3ST6 (ENSCDRG00005012599) #21	ENSCDRG00005012343 #22	FAHD1 (ENSCDRG00005012307) #23	HAGH (ENSCDRG00005012164) #24	IGFALS (ENSCDRG00005012131) #25	NUBP2 (ENSCDRG00005012000) #26	SPSB3 (ENSCDRG00005011937) #27	EME2 (ENSCDRG00005011861) #28	MRPS34 (ENSCDRG00005011817) #29	NME3 (ENSCDRG00005011755) #30	MAPK8IP3 (ENSCDRG00005011576) #31	JPT2 (ENSCDRG00005011470) #32	CRAMP1 (ENSCDRG00005011383) #33	TMEM204 (ENSCDRG00005011342) #35	IFT140 (ENSCDRG00005010873) #34	TELO2 (ENSCDRG00005010691) #36	PTX4 (ENSCDRG00005010607) #37
Alpaca	MODERN SPECIES	1443																ENSVPAG00000000245 #22
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Carnivora	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Caniformia	ANCESTRAL SPECIES	8	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Ursidae	ANCESTRAL SPECIES	3	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812.c #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348.f #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Ursus	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000169534	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812.c #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.a.b.b ##17	ENSGT00390000006348.f #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Polar bear	MODERN SPECIES	200	ENSUMAG00000022302	RAB26 (ENSUMAG00000022292)	TSC2 (ENSUMAG00000022263) #7	ENSUMAG00000022259	NTHL1 (ENSUMAG00000022257) #8	ENSUMAG00000022255 #9	ZNF598 (ENSUMAG00000022253) #11	GFER (ENSUMAG00000022251) #13	NOXO1 (ENSUMAG00000022239) #14	TBL3 (ENSUMAG00000022149) #15	RNF151 (ENSUMAG00000022133) #16	RPS2 (ENSUMAG00000022123) ##17	NDUFB10 (ENSUMAG00000022118) #18	RPL3L (ENSUMAG00000022104) #19	ENSUMAG00000022090 #20	ENSUMAG00000022070 #22	FAHD1 (ENSUMAG00000022065) #23	HAGH (ENSUMAG00000022061) #24	NUBP2 (ENSUMAG00000022054) #26	SPSB3 (ENSUMAG00000022049) #27	MAPK8IP3 (ENSUMAG00000021776) #31	JPT2 (ENSUMAG00000021688) #32	CRAMP1 (ENSUMAG00000021635) #33	TMEM204 (ENSUMAG00000021614) #35	IFT140 (ENSUMAG00000021605) #34	TELO2 (ENSUMAG00000021492) #36	PTX4 (ENSUMAG00000021453) #37	CLCN7 (ENSUMAG00000021373)	ENSUMAG00000021354	ENSUMAG00000021347	GNPTG (ENSUMAG00000021320)
Giant Panda	MODERN SPECIES	1	ENSAMEG00000024310	NHERF2 (ENSAMEG00000017688) #9	NPW (ENSAMEG00000017686) #10	ZNF598 (ENSAMEG00000017681) #11	ENSAMEG00000029661 #12	ENSAMEG00000026689 #13	ENSAMEG00000017671 #14	ENSAMEG00000031000 #14	TBL3 (ENSAMEG00000017654) #15	RNF151 (ENSAMEG00000017653) #16	RPS2 (ENSAMEG00000007366) #17	NDUFB10 (ENSAMEG00000008522) #18	RPL3L (ENSAMEG00000008489) #19	MSRB1 (ENSAMEG00000008487) #20	ENSAMEG00000025433 #21	ENSAMEG00000008475 #22	FAHD1 (ENSAMEG00000018730) #23	IGFALS (ENSAMEG00000008445) #25	NUBP2 (ENSAMEG00000008409) #26	SPSB3 (ENSAMEG00000008400) #27	EME2 (ENSAMEG00000008393) #28	MRPS34 (ENSAMEG00000031331) #29	ENSAMEG00000024318 #30	MAPK8IP3 (ENSAMEG00000008238) #31	JPT2 (ENSAMEG00000008232) #32	CRAMP1 (ENSAMEG00000008213) #33	IFT140 (ENSAMEG00000008128) #34	ENSAMEG00000008206 #35	TELO2 (ENSAMEG00000008092) #36	CLCN7 (ENSAMEG00000007997)	CCDC154 (ENSAMEG00000007986)
Mustelinae	ANCESTRAL SPECIES	15	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Ferret	MODERN SPECIES	189	PKD1 (ENSMPUG00000015425)	ENSMPUG00000020060	TSC2 (ENSMPUG00000015487) #7	NTHL1 (ENSMPUG00000015492) #8	NHERF2 (ENSMPUG00000015496) #9	ZNF598 (ENSMPUG00000015523) #11	SYNGR3 (ENSMPUG00000015525) #12	GFER (ENSMPUG00000015534) #13	NOXO1 (ENSMPUG00000015539) #14	TBL3 (ENSMPUG00000015545) #15	RNF151 (ENSMPUG00000015546) #16	RPS2 (ENSMPUG00000015547) #17	NDUFB10 (ENSMPUG00000015557) #18	RPL3L (ENSMPUG00000015565) #19	HS3ST6 (ENSMPUG00000015567) #21	ENSMPUG00000015569 #22	FAHD1 (ENSMPUG00000020061) #23	HAGH (ENSMPUG00000015572) #24	IGFALS (ENSMPUG00000015594) #25	NUBP2 (ENSMPUG00000015596) #26	SPSB3 (ENSMPUG00000015597) #27	EME2 (ENSMPUG00000015605) #28	MRPS34 (ENSMPUG00000015607) #29	MAPK8IP3 (ENSMPUG00000015614) #31	CRAMP1 (ENSMPUG00000015618) #33	ENSMPUG00000020062	IFT140 (ENSMPUG00000015620) #34	TMEM204 (ENSMPUG00000015628) #35	TELO2 (ENSMPUG00000015631) #36	CLCN7 (ENSMPUG00000015633)	CCDC154 (ENSMPUG00000015637)
American mink	MODERN SPECIES	111	TSC2 (ENSNVIG00000022292) #7	NTHL1 (ENSNVIG00000022264) #8	NHERF2 (ENSNVIG00000022253) #9	ENSNVIG00000022244 #10	ZNF598 (ENSNVIG00000022223) #11	SYNGR3 (ENSNVIG00000022207) #12	GFER (ENSNVIG00000022204) #13	NOXO1 (ENSNVIG00000022193) #14	TBL3 (ENSNVIG00000022174) #15	RNF151 (ENSNVIG00000022168) #16	ENSNVIG00000022145	ENSNVIG00000022130 #18	RPL3L (ENSNVIG00000022110) #19	MSRB1 (ENSNVIG00000022096) #20	HS3ST6 (ENSNVIG00000022091) #21	C9J0S1 (ENSNVIG00000022084) #22	FAHD1 (ENSNVIG00000022077) #23	ENSNVIG00000022054 #24	IGFALS (ENSNVIG00000022037) #25	NUBP2 (ENSNVIG00000022036) #26	SPSB3 (ENSNVIG00000022024) #27	EME2 (ENSNVIG00000022005) #28	MRPS34 (ENSNVIG00000021989) #29	ENSNVIG00000021975 #30	MAPK8IP3 (ENSNVIG00000019434) #31	JPT2 (ENSNVIG00000019338) #32	CRAMP1 (ENSNVIG00000019268) #33	TM204 (ENSNVIG00000019228) #35	IFT140 (ENSNVIG00000019190) #34	TELO2 (ENSNVIG00000019150) #36	PTX4 (ENSNVIG00000019142) #37
Canidae	ANCESTRAL SPECIES	3	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00940000153095.g.a.b ##17	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678.e #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Dingo	MODERN SPECIES	172	ENSCAFG00020026208 #7	NTHL1 (ENSCAFG00020026294) #8	NHERF2 (ENSCAFG00020026295) #9	ENSCAFG00020026296 #10	ZNF598 (ENSCAFG00020026302) #11	SYNGR3 (ENSCAFG00020026317) #12	GFER (ENSCAFG00020026319) #13	NOXO1 (ENSCAFG00020026320) #14	TBL3 (ENSCAFG00020026321) #15	RNF151 (ENSCAFG00020026323) #16	ENSCAFG00020026327 ##17	ENSCAFG00020000199 #18	RPL3L (ENSCAFG00020000233) #19	MSRB1 (ENSCAFG00020000325) #20	HS3ST6 (ENSCAFG00020000329) #21	ENSCAFG00020000382 #22	FAHD1 (ENSCAFG00020000583) #23	HAGH (ENSCAFG00020000595) #24	IGFALS (ENSCAFG00020000602) #25	NUBP2 (ENSCAFG00020000610) #26	SPSB3 (ENSCAFG00020000616) #27	EME2 (ENSCAFG00020000621) #28	MRPS34 (ENSCAFG00020000675) #29	MAPK8IP3 (ENSCAFG00020000709) #31	JPT2 (ENSCAFG00020000738) #32	CRAMP1 (ENSCAFG00020000788) #33	IFT140 (ENSCAFG00020001129) #34	TMEM204 (ENSCAFG00020001166) #35	TELO2 (ENSCAFG00020001179) #36	PTX4 (ENSCAFG00020001191) #37	CLCN7 (ENSCAFG00020001216)
Dog	MODERN SPECIES	34	RAB26 (ENSCAFG00845015769)	TSC2 (ENSCAFG00845016084) #7	NTHL1 (ENSCAFG00845016947) #8	NHERF2 (ENSCAFG00845017011) #9	ZNF598 (ENSCAFG00845017173) #11	SYNGR3 (ENSCAFG00845017505) #12	GFER (ENSCAFG00845017559) #13	NOXO1 (ENSCAFG00845017645) #14	TBL3 (ENSCAFG00845017737) #15	RNF151 (ENSCAFG00845018062) #16	NDUFB10 (ENSCAFG00845018108) #18	ENSCAFG00845018221 ##17	RPL3L (ENSCAFG00845018359) #19	MSRB1 (ENSCAFG00845018543) #20	HS3ST6 (ENSCAFG00845018590) #21	ENSCAFG00845018651 #22	HAGH (ENSCAFG00845018825) #24	FAHD1 (ENSCAFG00845019076) #23	IGFALS (ENSCAFG00845019117) #25	NUBP2 (ENSCAFG00845019149) #26	SPSB3 (ENSCAFG00845019224) #27	ENSCAFG00845019435 #28	MRPS34 (ENSCAFG00845019497) #29	MAPK8IP3 (ENSCAFG00845019811) #31	JPT2 (ENSCAFG00845020882) #32	CRAMP1 (ENSCAFG00845020921) #33	IFT140 (ENSCAFG00845021074) #34	ENSCAFG00845021199 #35	TELO2 (ENSCAFG00845021282) #36	PTX4 (ENSCAFG00845021394) #37	CLCN7 (ENSCAFG00845021512)
Red fox	MODERN SPECIES	200	PKD1 (ENSVVUG00000009411)	TSC2 (ENSVVUG00000009475) #7	NTHL1 (ENSVVUG00000009512) #8	SLC9A3R2 (ENSVVUG00000009515) #9	ZNF598 (ENSVVUG00000009523) #11	SYNGR3 (ENSVVUG00000009541) #12	GFER (ENSVVUG00000009553) #13	ENSVVUG00000009559 #14	TBL3 (ENSVVUG00000009589) #15	RNF151 (ENSVVUG00000009605) #16	ENSVVUG00000009633 #17	NDUFB10 (ENSVVUG00000009798) #18	RPL3L (ENSVVUG00000009805) #19	MSRB1 (ENSVVUG00000009825) #20	HS3ST6 (ENSVVUG00000009829) #21	MEIOB (ENSVVUG00000009837) #22	FAHD1 (ENSVVUG00000009934) #23	HAGH (ENSVVUG00000009937) #24	IGFALS (ENSVVUG00000009953) #25	NUBP2 (ENSVVUG00000009958) #26	SPSB3 (ENSVVUG00000009994) #27	MRPS34 (ENSVVUG00000010000) #29	MAPK8IP3 (ENSVVUG00000010026) #31	JPT2 (ENSVVUG00000010820) #33	IFT140 (ENSVVUG00000010908) #34	TMEM204 (ENSVVUG00000010997) #35	TELO2 (ENSVVUG00000011008) #36	PTX4 (ENSVVUG00000011033) #37	CLCN7 (ENSVVUG00000011067)	CCDC154 (ENSVVUG00000011157)	TSR3 (ENSVVUG00000011174)
Felidae	ANCESTRAL SPECIES	25	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348.a #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Panthera	ANCESTRAL SPECIES	29	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348.a #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Panthera_a	ANCESTRAL SPECIES	31	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348.a #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
lion	MODERN SPECIES	16	TSC2 (ENSPLOG00000016635) #7	NTHL1 (ENSPLOG00000016125) #8	NHERF2 (ENSPLOG00000015907) #9	ENSPLOG00000015835 #10	ZNF598 (ENSPLOG00000015814) #11	SYNGR3 (ENSPLOG00000015769) #12	GFER (ENSPLOG00000015737) #13	NOXO1 (ENSPLOG00000015582) #14	TBL3 (ENSPLOG00000015297) #15	RNF151 (ENSPLOG00000015190) #16	RPS2 (ENSPLOG00000015051) #17	NDUFB10 (ENSPLOG00000014912) #18	RPL3L (ENSPLOG00000014800) #19	MSRB1 (ENSPLOG00000014740) #20	HS3ST6 (ENSPLOG00000014723) #21	ENSPLOG00000014482 #22	FAHD1 (ENSPLOG00000014422) #23	HAGH (ENSPLOG00000014311) #24	IGFALS (ENSPLOG00000014256) #25	NUBP2 (ENSPLOG00000014050) #26	SPSB3 (ENSPLOG00000013972) #27	EME2 (ENSPLOG00000013867) #28	MRPS34 (ENSPLOG00000013830) #29	NME3 (ENSPLOG00000013752) #30	MAPK8IP3 (ENSPLOG00000012791) #31	JPT2 (ENSPLOG00000012622) #32	CRAMP1 (ENSPLOG00000011890) #33	TMEM204 (ENSPLOG00000011810) #35	IFT140 (ENSPLOG00000011769) #34	TELO2 (ENSPLOG00000011575) #36	PTX4 (ENSPLOG00000011504) #37
leopard	MODERN SPECIES	53	NTHL1 (ENSPPRG00000021879) #8	NHERF2 (ENSPPRG00000024928) #9	NPW (ENSPPRG00000024862) #10	ZNF598 (ENSPPRG00000024412) #11	SYNGR3 (ENSPPRG00000024180) #12	GFER (ENSPPRG00000023925) #13	ENSPPRG00000000893 #15	ENSPPRG00000001717 #15	RNF151 (ENSPPRG00000001989) #16	RPS2 (ENSPPRG00000004155) #17	ENSPPRG00000004667 #18	RPL3L (ENSPPRG00000005785) #19	ENSPPRG00000006325 #20	ENSPPRG00000009865 #20	HS3ST6 (ENSPPRG00000010023) #21	ENSPPRG00000011909 #22	FAHD1 (ENSPPRG00000012078) #23	HAGH (ENSPPRG00000012875) #24	IGFALS (ENSPPRG00000013707) #25	NUBP2 (ENSPPRG00000017030) #26	SPSB3 (ENSPPRG00000018726) #27	EME2 (ENSPPRG00000020258) #28	MRPS34 (ENSPPRG00000021470) #29	ENSPPRG00000021662 #30	MAPK8IP3 (ENSPPRG00000001108) #31	JPT2 (ENSPPRG00000001951) #32	CRAMP1 (ENSPPRG00000003952) #33	TMEM204 (ENSPPRG00000004432) #35	IFT140 (ENSPPRG00000005374) #34	TELO2 (ENSPPRG00000006967) #36	PTX4 (ENSPPRG00000009473) #37
Tiger	MODERN SPECIES	590	MLST8 (ENSPTIG00000014849)	TRAF7 (ENSPTIG00000014610)	ENSPTIG00000014331	RAB26 (ENSPTIG00000014200)	NTHL1 (ENSPTIG00000011471) #8	NHERF2 (ENSPTIG00000011167) #9	GFER (ENSPTIG00000011023) #13	ENSPTIG00000010738 #14	TBL3 (ENSPTIG00000010377) #15	ENSPTIG00000010338 #16	ENSPTIG00000010284 ##17	NDUFB10 (ENSPTIG00000009910) #18	RPL3L (ENSPTIG00000009722) #19	MSRB1 (ENSPTIG00000009446) #20	HS3ST6 (ENSPTIG00000009671) #21	ENSPTIG00000009036 #22	FAHD1 (ENSPTIG00000009011) #23	HAGH (ENSPTIG00000008853) #24	NUBP2 (ENSPTIG00000008814) #26	EME2 (ENSPTIG00000008505) #28	MAPK8IP3 (ENSPTIG00000007779) #31	JPT2 (ENSPTIG00000007704) #32	TMEM204 (ENSPTIG00000006591) #35	IFT140 (ENSPTIG00000005835) #34	TELO2 (ENSPTIG00000005753) #36	PTX4 (ENSPTIG00000005448) #37	CLCN7 (ENSPTIG00000005037)	UNKL (ENSPTIG00000000863)	TSR3 (ENSPTIG00000000359)	UBE2I (ENSPTIG00000021666)	ENSPTIG00000021646
Cat	MODERN SPECIES	247	TSC2 (ENSFCAG00000011746) #7	NTHL1 (ENSFCAG00000002211) #8	NHERF2 (ENSFCAG00000022929) #9	ENSFCAG00000042975 #10	ZNF598 (ENSFCAG00000025422) #11	SYNGR3 (ENSFCAG00000011743) #12	GFER (ENSFCAG00000008479) #13	NOXO1 (ENSFCAG00000011741) #14	TBL3 (ENSFCAG00000011740) #15	RNF151 (ENSFCAG00000011739) #16	RPS2 (ENSFCAG00000029191) ##17	NDUFB10 (ENSFCAG00000011738) #18	RPL3L (ENSFCAG00000011737) #19	MSRB1 (ENSFCAG00000039302) #20	HS3ST6 (ENSFCAG00000038639) #21	MEIOB (ENSFCAG00000011733) #22	FAHD1 (ENSFCAG00000031483) #23	HAGH (ENSFCAG00000011731) #24	IGFALS (ENSFCAG00000040872) #25	NUBP2 (ENSFCAG00000024659) #26	SPSB3 (ENSFCAG00000011730) #27	EME2 (ENSFCAG00000011728) #28	MRPS34 (ENSFCAG00000022788) #29	NME3 (ENSFCAG00000046405) #30	MAPK8IP3 (ENSFCAG00000011724) #31	JPT2 (ENSFCAG00000034589) #32	CRAMP1 (ENSFCAG00000011852) #33	IFT140 (ENSFCAG00000010653) #34	TMEM204 (ENSFCAG00000033771) #35	TELO2 (ENSFCAG00000010652) #36	PTX4 (ENSFCAG00000043223) #37
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Chiroptera	ANCESTRAL SPECIES	12	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Microchiroptera	ANCESTRAL SPECIES	17	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Microbat	MODERN SPECIES	1269	PKD1 (ENSMLUG00000004260)	TSC2 (ENSMLUG00000004241) #7	NTHL1 (ENSMLUG00000004234) #8	NHERF2 (ENSMLUG00000005825) #9	ZNF598 (ENSMLUG00000004224) #11	ENSMLUG00000028770	GFER (ENSMLUG00000030630) #13	NOXO1 (ENSMLUG00000011725) #14	TBL3 (ENSMLUG00000011684) #15	RNF151 (ENSMLUG00000011679) #16	ENSMLUG00000011660 #17	ENSMLUG00000011655 #18	RPL3L (ENSMLUG00000011638) #19	MSRB1 (ENSMLUG00000011634) #20	HS3ST6 (ENSMLUG00000011625) #21	ENSMLUG00000000791 #22	FAHD1 (ENSMLUG00000000789) #23	HAGH (ENSMLUG00000000782) #24	IGFALS (ENSMLUG00000000776) #25	NUBP2 (ENSMLUG00000000768) #26	SPSB3 (ENSMLUG00000028814) #27	EME2 (ENSMLUG00000000758) #28	MRPS34 (ENSMLUG00000028772) #29	NME3 (ENSMLUG00000000754) #30	MAPK8IP3 (ENSMLUG00000000736) #31	JPT2 (ENSMLUG00000000730) #32	CRAMP1 (ENSMLUG00000000709) #33	TMEM204 (ENSMLUG00000010040) #35	IFT140 (ENSMLUG00000009987) #34	TELO2 (ENSMLUG00000011527) #36	PTX4 (ENSMLUG00000011561) #37
Greater horseshoe bat	MODERN SPECIES	47	NTHL1 (ENSRFEG00010021165) #8	NHERF2 (ENSRFEG00010021131) #9	ENSRFEG00010021115 #10	ZNF598 (ENSRFEG00010021099) #11	SYNGR3 (ENSRFEG00010021081) #12	ENSRFEG00010021061 #13	NOXO1 (ENSRFEG00010021044) #14	TBL3 (ENSRFEG00010020999) #15	ENSRFEG00010020973	RNF151 (ENSRFEG00010020958) #16	RPS2 (ENSRFEG00010020920) #17	NDUFB10 (ENSRFEG00010020889) #18	RPL3L (ENSRFEG00010020862) #19	MSRB1 (ENSRFEG00010020839) #20	HS3ST6 (ENSRFEG00010020816) #21	ENSRFEG00010020743 #22	FAHD1 (ENSRFEG00010020709) #23	HAGH (ENSRFEG00010020660) #24	IGFALS (ENSRFEG00010020626) #25	NUBP2 (ENSRFEG00010020577) #26	SPSB3 (ENSRFEG00010020550) #27	EME2 (ENSRFEG00010020532) #28	MRPS34 (ENSRFEG00010020489) #29	MAPK8IP3 (ENSRFEG00010020345) #31	JPT2 (ENSRFEG00010020239) #32	CRAMP1 (ENSRFEG00010020192) #33	TMEM204 (ENSRFEG00010020163) #35	IFT140 (ENSRFEG00010020088) #34	TELO2 (ENSRFEG00010020015) #36	PTX4 (ENSRFEG00010019992) #37	CLCN7 (ENSRFEG00010019806)
Megabat	MODERN SPECIES	3528					ZNF598 (ENSPVAG00000016717) #11	SYNGR3 (ENSPVAG00000016716) #12	GFER (ENSPVAG00000016715) #13	NOXO1 (ENSPVAG00000016714) #14	TBL3 (ENSPVAG00000016710) #15	RNF151 (ENSPVAG00000016706) #16	RPS2 (ENSPVAG00000016704) #17	NDUFB10 (ENSPVAG00000016701) #18	RPL3L (ENSPVAG00000016699) #19	ENSPVAG00000016697 #20	HS3ST6 (ENSPVAG00000016696) #21	ENSPVAG00000016695 #22	HAGH (ENSPVAG00000016691) #24	NUBP2 (ENSPVAG00000016689) #26	SPSB3 (ENSPVAG00000016687) #27	EME2 (ENSPVAG00000016683) #28	MRPS34 (ENSPVAG00000016682) #29	NME3 (ENSPVAG00000016681) #30	MAPK8IP3 (ENSPVAG00000016674) #31	JPT2 (ENSPVAG00000016673) #32	CRAMP1 (ENSPVAG00000016669) #33	ENSPVAG00000016665	TMEM204 (ENSPVAG00000016663) #35	IFT140 (ENSPVAG00000016662) #34	TELO2 (ENSPVAG00000016661) #36	PTX4 (ENSPVAG00000016660) #37	CLCN7 (ENSPVAG00000016657)
Equus	ANCESTRAL SPECIES	32	ENSGT00940000158702	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a.b #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Horse	MODERN SPECIES	4	RAB26 (ENSECAG00000020903)	TSC2 (ENSECAG00000021222) #7	NTHL1 (ENSECAG00000012595) #8	NHERF2 (ENSECAG00000013367) #9	NPW (ENSECAG00000030307) #10	ZNF598 (ENSECAG00000014058) #11	SYNGR3 (ENSECAG00000015298) #12	GFER (ENSECAG00000036054) #13	NOXO1 (ENSECAG00000017619) #14	TBL3 (ENSECAG00000019299) #15	RNF151 (ENSECAG00000008953) #16	RPS2 (ENSECAG00000009065) #17	NDUFB10 (ENSECAG00000020610) #18	RPL3L (ENSECAG00000020632) #19	HS3ST6 (ENSECAG00000000862) #21	MEIOB (ENSECAG00000001005) #22	ENSECAG00000057961	FAHD1 (ENSECAG00000004353) #23	HAGH (ENSECAG00000005471) #24	IGFALS (ENSECAG00000039211) #25	NUBP2 (ENSECAG00000012545) #26	SPSB3 (ENSECAG00000013413) #27	EME2 (ENSECAG00000016045) #28	MRPS34 (ENSECAG00000016370) #29	NME3 (ENSECAG00000038477) #30	MAPK8IP3 (ENSECAG00000016379) #31	JPT2 (ENSECAG00000026941) #32	CRAMP1 (ENSECAG00000023299) #33	IFT140 (ENSECAG00000009031) #34	TMEM204 (ENSECAG00000015576) #35	TELO2 (ENSECAG00000017413) #36
Donkey	MODERN SPECIES	5	NTHL1 (ENSEASG00005004702) #8	NHERF2 (ENSEASG00005004685) #9	ENSEASG00005004672 #10	ZNF598 (ENSEASG00005004666) #11	SYNGR3 (ENSEASG00005004661) #12	ENSEASG00005004659 #13	NOXO1 (ENSEASG00005004653) #14	TBL3 (ENSEASG00005004649) #15	ENSEASG00005025509 #16	RPS2 (ENSEASG00005004630) #17	NDUFB10 (ENSEASG00005028164) #18	ENSEASG00005033190	RPL3L (ENSEASG00005009140) #19	HS3ST6 (ENSEASG00005004607) #21	ENSEASG00005015561	ENSEASG00005004600 #22	FAHD1 (ENSEASG00005030060) #23	HAGH (ENSEASG00005004592) #24	IGFALS (ENSEASG00005004586) #25	NUBP2 (ENSEASG00005035230) #26	SPSB3 (ENSEASG00005026398) #27	ENSEASG00005025437 #28	ENSEASG00005025961 #29	NME3 (ENSEASG00005035536) #30	ENSEASG00005001955 #31	ENSEASG00005034484 #31	ENSEASG00005038396 #31	JPT2 (ENSEASG00005025904) #32	CRAMP1 (ENSEASG00005001568) #33	TMEM204 (ENSEASG00005001516) #35	IFT140 (ENSEASG00005001221) #34
Atlantogenata	ANCESTRAL SPECIES	32	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37
Xenarthra	ANCESTRAL SPECIES	177											ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.b ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160824 #25	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00390000007652.h #32	ENSGT00390000003337 #33	ENSGT00940000153417.A #34	ENSGT00390000015528 #35	ENSGT00390000006698 #36
Armadillo	MODERN SPECIES	1647											RNF151 (ENSDNOG00000041949) #16	ENSDNOG00000042334 ##17	NDUFB10 (ENSDNOG00000003688) #18	RPL3L (ENSDNOG00000018455) #19	HS3ST6 (ENSDNOG00000001759) #21	ENSDNOG00000015418 #22	IGFALS (ENSDNOG00000049797) #25	FAHD1 (ENSDNOG00000031262) #23	HAGH (ENSDNOG00000038621) #24	NUBP2 (ENSDNOG00000043662) #26	ENSDNOG00000010374 #27	EME2 (ENSDNOG00000010348) #28	MRPS34 (ENSDNOG00000042503) #29	JPT2 (ENSDNOG00000030881) #32	ENSDNOG00000045712 #33
Sloth	MODERN SPECIES	4813																ENSCHOG00000011455 #22
Afrotheria	ANCESTRAL SPECIES	30	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458	ENSGT00390000002278
Tenrec	MODERN SPECIES	5239																ENSETEG00000016035 #22
Afrotheria_a	ANCESTRAL SPECIES	29	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.b.a.a #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00530000063937.b #28	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458	ENSGT00390000002278
Hyrax	MODERN SPECIES	6827																ENSPCAG00000012727 #22	FAHD1 (ENSPCAG00000012720) #23	ENSPCAG00000012675	ENSPCAG00000012623 #24
Elephant	MODERN SPECIES	442	TSC2 (ENSLAFG00000015424) #7	NTHL1 (ENSLAFG00000015421) #8	NHERF2 (ENSLAFG00000004276) #9	ENSLAFG00000022592	ZNF598 (ENSLAFG00000026781) #11	SYNGR3 (ENSLAFG00000026399) #12	GFER (ENSLAFG00000028685) #13	ENSLAFG00000004707 #14	TBL3 (ENSLAFG00000004699) #15	RNF151 (ENSLAFG00000030860) #16	ENSLAFG00000004696 #17	NDUFB10 (ENSLAFG00000021643) #18	RPL3L (ENSLAFG00000016587) #19	ENSLAFG00000016584 #34	HS3ST6 (ENSLAFG00000001051) #21	ENSLAFG00000008142 #22	FAHD1 (ENSLAFG00000008141) #23	HAGH (ENSLAFG00000032140) #24	SPSB3 (ENSLAFG00000028630) #27	ENSLAFG00000023334	MRPS34 (ENSLAFG00000022475) #29	MAPK8IP3 (ENSLAFG00000028194) #31	JPT2 (ENSLAFG00000016324) #32	CRAMP1 (ENSLAFG00000020604) #33	ENSLAFG00000003286 #34	TMEM204 (ENSLAFG00000017196) #35	TELO2 (ENSLAFG00000003284) #36	PTX4 (ENSLAFG00000012669) #37	CLCN7 (ENSLAFG00000003618)	ENSLAFG00000004047	UQCC4 (ENSLAFG00000026451)
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a ##17	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Opossum	MODERN SPECIES	5	ENSMODG00000045602	PKD1 (ENSMODG00000016034)	TSC2 (ENSMODG00000016014) #7	NTHL1 (ENSMODG00000016038) #8	NHERF2 (ENSMODG00000016054) #9	ENSMODG00000046523	ZNF598 (ENSMODG00000016063) #11	ENSMODG00000016066 #12	ENSMODG00000049873 #14	TBL3 (ENSMODG00000016091) #15	RNF151 (ENSMODG00000016093) #16	ENSMODG00000016077 ##17	NDUFB10 (ENSMODG00000016095) #18	RPL3L (ENSMODG00000016100) #19	HS3ST6 (ENSMODG00000016042) #21	ENSMODG00000016106 #22	FAHD1 (ENSMODG00000016110) #23	ENSMODG00000016115 #24	IGFALS (ENSMODG00000016108) #25	NUBP2 (ENSMODG00000016119) #26	SPSB3 (ENSMODG00000016123) #27	ENSMODG00000016134 #30	MAPK8IP3 (ENSMODG00000016149) #31	JPT2 (ENSMODG00000016153) #32	CRAMP1 (ENSMODG00000016154) #33	TMEM204 (ENSMODG00000016163) #35	IFT140 (ENSMODG00000016160) #34	TELO2 (ENSMODG00000016164) #36	ENSMODG00000016174	ENSMODG00000016175 #37	CLCN7 (ENSMODG00000016179)
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a ##17	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Tasmanian devil	MODERN SPECIES		PKD1 (ENSSHAG00000016120)	TSC2 (ENSSHAG00000015973) #7	NTHL1 (ENSSHAG00000015898) #8	NHERF2 (ENSSHAG00000021249) #9	ZNF598 (ENSSHAG00000015524) #11	SYNGR3 (ENSSHAG00000015500) #12	ENSSHAG00000029752 #13	ENSSHAG00000015285 #14	TBL3 (ENSSHAG00000015266) #15	RNF151 (ENSSHAG00000015257) #16	RPS2 (ENSSHAG00000015213) ##17	NDUFB10 (ENSSHAG00000015191) #18	RPL3L (ENSSHAG00000021316) #19	MSRB1 (ENSSHAG00000029584) #20	HS3ST6 (ENSSHAG00000009243) #21	ENSSHAG00000013736 #22	FAHD1 (ENSSHAG00000013683) #23	HAGH (ENSSHAG00000023063) #24	IGFALS (ENSSHAG00000013535) #25	NUBP2 (ENSSHAG00000013485) #26	SPSB3 (ENSSHAG00000013377) #27	MRPS34 (ENSSHAG00000022861) #29	NME3 (ENSSHAG00000023742) #30	MAPK8IP3 (ENSSHAG00000012766) #31	JPT2 (ENSSHAG00000012700) #32	CRAMP1 (ENSSHAG00000012114) #33	TMEM204 (ENSSHAG00000010939) #35	IFT140 (ENSSHAG00000010791) #34	TELO2 (ENSSHAG00000010585) #36	ENSSHAG00000023530	CLCN7 (ENSSHAG00000009987)
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a ##17	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.g.a.c ##17	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000160824 #25	ENSGT00950000183193.A.c.b #26	ENSGT01030000234629.E.a.b #27	ENSGT00390000008964 #29	ENSGT00940000161283 #30	ENSGT00940000153496.a.a #31	ENSGT00390000007652 #32	ENSGT00390000003337 #33	ENSGT00390000015528 #35	ENSGT00940000153417.A #34	ENSGT00390000006698 #36	ENSGT01100000263515.a.a #37	ENSGT00940000158458
Common wonbat	MODERN SPECIES	1009	PKD1 (ENSVURG00010010585)	TSC2 (ENSVURG00010010698) #7	NTHL1 (ENSVURG00010010768) #8	NHERF2 (ENSVURG00010010793) #9	ZNF598 (ENSVURG00010010805) #11	SYNGR3 (ENSVURG00010010820) #12	GFER (ENSVURG00010010826) #13	ENSVURG00010010834 #14	TBL3 (ENSVURG00010010842) #15	RNF151 (ENSVURG00010010857) #16	ENSVURG00010010866 ##17	NDUFB10 (ENSVURG00010010878) #18	RPL3L (ENSVURG00010010888) #19	MSRB1 (ENSVURG00010010897) #20	ENSVURG00010010904 #21	ENSVURG00010010911 #22	HAGH (ENSVURG00010010956) #24	FAHD1 (ENSVURG00010011002) #23	IGFALS (ENSVURG00010011011) #25	NUBP2 (ENSVURG00010011022) #26	SPSB3 (ENSVURG00010011033) #27	MRPS34 (ENSVURG00010011039) #29	NME3 (ENSVURG00010011044) #30	MAPK8IP3 (ENSVURG00010011078) #31	CRAMP1 (ENSVURG00010011179) #33	IFT140 (ENSVURG00010011205) #34	TMEM204 (ENSVURG00010011226) #35	TELO2 (ENSVURG00010011232) #36	PTX4 (ENSVURG00010011243) #37	CLCN7 (ENSVURG00010011261)	ENSVURG00010011295
koala	MODERN SPECIES	116	PKD1 (ENSPCIG00000024981)	TSC2 (ENSPCIG00000021869) #7	NTHL1 (ENSPCIG00000021826) #8	NHERF2 (ENSPCIG00000021822) #9	ZNF598 (ENSPCIG00000021819) #11	SYNGR3 (ENSPCIG00000021817) #12	ENSPCIG00000021815 #13	ENSPCIG00000033497 #14	TBL3 (ENSPCIG00000021811) #15	RNF151 (ENSPCIG00000021808) #16	ENSPCIG00000021804 ##17	NDUFB10 (ENSPCIG00000021802) #18	RPL3L (ENSPCIG00000021801) #19	MSRB1 (ENSPCIG00000030855) #20	HS3ST6 (ENSPCIG00000017369) #21	ENSPCIG00000017363 #22	FAHD1 (ENSPCIG00000017360) #23	HAGH (ENSPCIG00000017282) #24	IGFALS (ENSPCIG00000017281) #25	NUBP2 (ENSPCIG00000017280) #26	SPSB3 (ENSPCIG00000017279) #27	MRPS34 (ENSPCIG00000017278) #29	NME3 (ENSPCIG00000017277) #30	MAPK8IP3 (ENSPCIG00000017276) #31	JPT2 (ENSPCIG00000017275) #32	CRAMP1 (ENSPCIG00000017274) #33	TMEM204 (ENSPCIG00000017273) #35	ENSPCIG00000017270 #34	TELO2 (ENSPCIG00000017263) #36	PTX4 (ENSPCIG00000017260) #37	CLCN7 (ENSPCIG00000015643)
Wallaby	MODERN SPECIES	6580																ENSMEUG00000002304 #22
Platypus	MODERN SPECIES	13	PKD1 (ENSOANG00000049726)	TSC2 (ENSOANG00000009994) #7	NTHL1 (ENSOANG00000000500) #8	NHERF2 (ENSOANG00000037860) #9	ENSOANG00000045564	ZNF598 (ENSOANG00000045210) #11	ENSOANG00000046944 #12	ENSOANG00000049373 #13	ENSOANG00000050062	TBL3 (ENSOANG00000009819) #15	ENSOANG00000040650 #18	RPS2 (ENSOANG00000039911) ##17	RPL3L (ENSOANG00000001892) #19	MSRB1 (ENSOANG00000001860) #20	HS3ST6 (ENSOANG00000002922) #21	ENSOANG00000002921 #22	HAGH (ENSOANG00000002919) #24	IGFALS (ENSOANG00000028313) #25	NUBP2 (ENSOANG00000046631) #26	SPSB3 (ENSOANG00000015654) #27	MRPS34 (ENSOANG00000050507) #29	ENSOANG00000044345 #30	MAPK8IP3 (ENSOANG00000011871) #31	JPT2 (ENSOANG00000044642) #32	CRAMP1 (ENSOANG00000002915) #33	TMEM204 (ENSOANG00000013655) #35	IFT140 (ENSOANG00000001815) #34	TELO2 (ENSOANG00000001243) #36	CLCN7 (ENSOANG00000002751)	ENSOANG00000038628	ENSOANG00000048960
Sauria	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00960000188336
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Archosauria	ANCESTRAL SPECIES	8	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Aves	ANCESTRAL SPECIES	11	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00940000175728	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090
Neognathae	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00940000175728	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.f	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000163090	ENSGT00940000160265	ENSGT00950000182894.B
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00390000001723.a #22
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723.a #22	ENSGT00390000001723.b #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.f	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000163090	ENSGT00940000160265	ENSGT00950000182894.B
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00940000158702	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00390000001723.b #22	ENSGT00390000001723.a #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.f	ENSGT00940000161924.e	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000163090	ENSGT00940000160265	ENSGT00950000182894.B
Zebra finch	MODERN SPECIES	5	NTHL1 (ENSTGUG00000006556) #8	NHERF2 (ENSTGUG00000022996) #9	ENSTGUG00000024262	ZNF598 (ENSTGUG00000006571) #11	SYNGR3 (ENSTGUG00000027112) #12	ENSTGUG00000021419 #13	NOXO1 (ENSTGUG00000006587) #14	ENSTGUG00000023211 #15	RPS2 (ENSTGUG00000006663) ##17	ENSTGUG00000021429 #18	ENSTGUG00000006708 #19	ENSTGUG00000006725	MSRB1 (ENSTGUG00000027855) #20	ENSTGUG00000022733	HS3ST6 (ENSTGUG00000006746) #21	ENSTGUG00000006747 #22	ENSTGUG00000006763 #23	ENSTGUG00000022314 #24	ENSTGUG00000027925	ENSTGUG00000029016	ENSTGUG00000024478	ENSTGUG00000029148	ENSTGUG00000018868	ENSTGUG00000021369	ENSTGUG00000018796	ENSTGUG00000020350 #13	ENSTGUG00000006592 #15	ENSTGUG00000026835	ENSTGUG00000006696 #18	ENSTGUG00000025310 #19	ENSTGUG00000020709
Common canary	MODERN SPECIES	17	ENSSCAG00000005325	MLST8 (ENSSCAG00000005327)	ENSSCAG00000005331	ENSSCAG00000005337	ENSSCAG00000005364	TRAF7 (ENSSCAG00000005369)	RAB26 (ENSSCAG00000005397)	NOXO1 (ENSSCAG00000005494) #14	TBL3 (ENSSCAG00000005498) #15	RPS2 (ENSSCAG00000005511) ##17	NDUFB10 (ENSSCAG00000005512) #18	RPL3L (ENSSCAG00000005515) #19	ENSSCAG00000005528	MSRB1 (ENSSCAG00000005536) #20	HS3ST6 (ENSSCAG00000005539) #21	ENSSCAG00000005542 #22	FAHD1 (ENSSCAG00000005544) #23	HAGH (ENSSCAG00000005549) #24	PKD1 (ENSSCAG00000005634)	TSC2 (ENSSCAG00000006018) #7	NTHL1 (ENSSCAG00000006049) #8	NHERF2 (ENSSCAG00000006056) #9	ZNF598 (ENSSCAG00000006065) #11	ENSSCAG00000006070	SYNGR3 (ENSSCAG00000006076) #12	GFER (ENSSCAG00000006086) #13	HAGHL (ENSSCAG00000006095)	CIAO3 (ENSSCAG00000006119)	ENSSCAG00000006125	RPUSD1 (ENSSCAG00000006132)	ENSSCAG00000006136
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723.b #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.f	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000163090	ENSGT00940000160265	ENSGT00950000182894.B	ENSGT00960000188336
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723.a #22	ENSGT00390000001723.b #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.f	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000163090	ENSGT00940000160265	ENSGT00950000182894.B	ENSGT00960000188336
Medium ground finch	MODERN SPECIES	102	RAB26 (ENSGFOG00000014230)	PKD1 (ENSGFOG00000014214)	TSC2 (ENSGFOG00000011268) #7	NTHL1 (ENSGFOG00000010911) #8	NHERF2 (ENSGFOG00000010907) #9	ZNF598 (ENSGFOG00000010892) #11	SYNGR3 (ENSGFOG00000010885) #12	GFER (ENSGFOG00000010876) #13	NOXO1 (ENSGFOG00000010870) #14	TBL3 (ENSGFOG00000010855) #15	ENSGFOG00000010827 ##17	NDUFB10 (ENSGFOG00000010816) #18	RPL3L (ENSGFOG00000010806) #19	ENSGFOG00000010797	HS3ST6 (ENSGFOG00000010788) #21	ENSGFOG00000010771 #22	FAHD1 (ENSGFOG00000010761) #23	HAGH (ENSGFOG00000010755) #24	HAGHL (ENSGFOG00000010747)	CIAO3 (ENSGFOG00000010736)	ENSGFOG00000010724	RPUSD1 (ENSGFOG00000010722)	CHTF18 (ENSGFOG00000010709)	GNG13 (ENSGFOG00000010701)	ENSGFOG00000010692	ENSGFOG00000010688	LMF1 (ENSGFOG00000010677)	SOX8 (ENSGFOG00000010673)	C1QTNF8 (ENSGFOG00000010671)	SSTR5 (ENSGFOG00000010670)	TEKT4 (ENSGFOG00000010668)
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00940000158558	ENSGT00940000158702	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00390000001723.b #22	ENSGT00390000001723.a #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.f	ENSGT00940000161924.e	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000163090	ENSGT00940000160265
Zebra finch	MODERN SPECIES	5	ENSTGUG00000022314 #24	ENSTGUG00000027925	ENSTGUG00000029016	ENSTGUG00000024478	ENSTGUG00000029148	ENSTGUG00000018868	ENSTGUG00000021369	ENSTGUG00000018796	ENSTGUG00000020350 #13	ENSTGUG00000006592 #15	ENSTGUG00000026835	ENSTGUG00000006696 #18	ENSTGUG00000025310 #19	ENSTGUG00000020709	ENSTGUG00000026212	ENSTGUG00000016182 #22	ENSTGUG00000024646 #23	ENSTGUG00000006768 #24	ENSTGUG00000020767	ENSTGUG00000021169	ENSTGUG00000021559	ENSTGUG00000026604	ENSTGUG00000029663	GNG13 (ENSTGUG00000026224)	ENSTGUG00000006834	ENSTGUG00000022589	LMF1 (ENSTGUG00000006840)	SOX8 (ENSTGUG00000027602)	C1QTNF8 (ENSTGUG00000006866)	SSTR5 (ENSTGUG00000006869)	TEKT4 (ENSTGUG00000006873)
Flycatcher	MODERN SPECIES	5	NTHL1 (ENSFALG00000003482) #8	NHERF2 (ENSFALG00000003473) #9	ENSFALG00000027182	ENSFALG00000027229	ZNF598 (ENSFALG00000003463) #11	SYNGR3 (ENSFALG00000003454) #12	GFER (ENSFALG00000028289) #13	ENSFALG00000027154 #14	TBL3 (ENSFALG00000003409) #15	RPS2 (ENSFALG00000003370) ##17	NDUFB10 (ENSFALG00000024379) #18	RPL3L (ENSFALG00000003326) #19	ENSFALG00000003313	MSRB1 (ENSFALG00000003304) #20	HS3ST6 (ENSFALG00000026410) #21	ENSFALG00000003297 #22	FAHD1 (ENSFALG00000014640) #23	HAGH (ENSFALG00000024701) #24	ENSFALG00000024621	CIAO3 (ENSFALG00000027329)	ENSFALG00000003224	RPUSD1 (ENSFALG00000026534)	CHTF18 (ENSFALG00000003188)	GNG13 (ENSFALG00000027392)	ENSFALG00000024700	ENSFALG00000003144	ENSFALG00000013656	SOX8 (ENSFALG00000028247)	ENSFALG00000025455	ENSFALG00000013659	ENSFALG00000014164
Great tit	MODERN SPECIES	5	NTHL1 (ENSPMJG00000017660) #8	NHERF2 (ENSPMJG00000017659) #9	ENSPMJG00000017658	ZNF598 (ENSPMJG00000017656) #11	SYNGR3 (ENSPMJG00000017655) #12	GFER (ENSPMJG00000017654) #13	NOXO1 (ENSPMJG00000017653) #14	TBL3 (ENSPMJG00000017652) #15	RPS2 (ENSPMJG00000017650) ##17	NDUFB10 (ENSPMJG00000017649) #18	RPL3L (ENSPMJG00000017648) #19	ENSPMJG00000017629	MSRB1 (ENSPMJG00000017628) #20	ENSPMJG00000017627	HS3ST6 (ENSPMJG00000017626) #21	ENSPMJG00000017625 #22	FAHD1 (ENSPMJG00000017619) #23	ENSPMJG00000017618	HAGH (ENSPMJG00000017615) #24	ENSPMJG00000017614	CIAO3 (ENSPMJG00000017612)	ENSPMJG00000017604	ENSPMJG00000017603	RPUSD1 (ENSPMJG00000017601)	CHTF18 (ENSPMJG00000017598)	GNG13 (ENSPMJG00000017592)	ENSPMJG00000017588	ENSPMJG00000017567	ENSPMJG00000017561	SOX8 (ENSPMJG00000017558)	C1QTNF8 (ENSPMJG00000017557)
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B	ENSGT00960000188336
Kakapo	MODERN SPECIES	21	TSC2 (ENSSHBG00005012886) #7	NTHL1 (ENSSHBG00005010959) #8	ENSSHBG00005010912	NHERF2 (ENSSHBG00005010863) #9	ZNF598 (ENSSHBG00005010821) #11	SYNGR3 (ENSSHBG00005010799) #12	GFER (ENSSHBG00005010784) #13	NOXO1 (ENSSHBG00005010737) #14	TBL3 (ENSSHBG00005010662) #15	RPS2 (ENSSHBG00005010592) ##17	NDUFB10 (ENSSHBG00005010570) #18	RPL3L (ENSSHBG00005010527) #19	ENSSHBG00005010475	ENSSHBG00005010439	HS3ST6 (ENSSHBG00005010427) #21	ENSSHBG00005010388 #22	FAHD1 (ENSSHBG00005010366) #23	HAGH (ENSSHBG00005010319) #24	HAGHL (ENSSHBG00005010196)	CIAO3 (ENSSHBG00005010157)	MSLN (ENSSHBG00005010128)	RPUSD1 (ENSSHBG00005000730)	CHTF18 (ENSSHBG00005000709)	GNG13 (ENSSHBG00005017717)	ENSSHBG00005017707	ENSSHBG00005017685	ENSSHBG00005017669	SOX8 (ENSSHBG00005017661)	SSTR5 (ENSSHBG00005017655)	C1QTNF8 (ENSSHBG00005017651)	TEKT4 (ENSSHBG00005017647)
Golden eagle	MODERN SPECIES	17	TSC2 (ENSACCG00020013721) #7	NTHL1 (ENSACCG00020013763) #8	NHERF2 (ENSACCG00020013780) #9	ENSACCG00020013788	ZNF598 (ENSACCG00020013811) #11	SYNGR3 (ENSACCG00020013829) #12	GFER (ENSACCG00020013856) #13	NOXO1 (ENSACCG00020013874) #14	TBL3 (ENSACCG00020013894) #15	RPS2 (ENSACCG00020013938) ##17	NDUFB10 (ENSACCG00020013951) #18	RPL3L (ENSACCG00020013977) #19	ENSACCG00020013996	MSRB1 (ENSACCG00020014009) #20	HS3ST6 (ENSACCG00020014015) #21	ENSACCG00020014054 #22	FAHD1 (ENSACCG00020014092) #23	HAGH (ENSACCG00020014116) #24	HAGHL (ENSACCG00020014150)	CIAO3 (ENSACCG00020014181)	MSLN (ENSACCG00020014201)	RPUSD1 (ENSACCG00020014226)	CHTF18 (ENSACCG00020014260)	GNG13 (ENSACCG00020014286)	ENSACCG00020014300	LMF1 (ENSACCG00020014313)	SOX8 (ENSACCG00020014332)	SSTR5 (ENSACCG00020014343)	C1QTNF8 (ENSACCG00020014354)	TEKT4 (ENSACCG00020014382)	ENSACCG00020014405
Galloanserae	ANCESTRAL SPECIES	9	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00940000175728	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090
Anatidae	ANCESTRAL SPECIES	7	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.d	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00940000175728	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090
Pink-footed goose	MODERN SPECIES	59	TSC2 (ENSABRG00000009812) #7	NTHL1 (ENSABRG00000014025) #8	NHERF2 (ENSABRG00000014028) #9	ENSABRG00000014032	ZNF598 (ENSABRG00000014043) #11	SYNGR3 (ENSABRG00000014049) #12	GFER (ENSABRG00000014055) #13	NOXO1 (ENSABRG00000014059) #14	TBL3 (ENSABRG00000014067) #15	RPS2 (ENSABRG00000014090) ##17	NDUFB10 (ENSABRG00000014096) #18	RPL3L (ENSABRG00000014104) #19	ENSABRG00000014113	MSRB1 (ENSABRG00000014151) #20	HS3ST6 (ENSABRG00000014160) #21	ENSABRG00000014168 #22	FAHD1 (ENSABRG00000014194) #23	HAGH (ENSABRG00000014196) #24	HAGHL (ENSABRG00000014200)	CIAO3 (ENSABRG00000014201)	MSLN (ENSABRG00000014207)	ENSABRG00000014220	RPUSD1 (ENSABRG00000014233)	CHTF18 (ENSABRG00000014258)	ENSABRG00000014279	ENSABRG00000014283	ENSABRG00000014299	ENSABRG00000014307	SOX8 (ENSABRG00000014311)	SSTR5 (ENSABRG00000014318)	C1QTNF8 (ENSABRG00000014323)
Duck	MODERN SPECIES	6	ENSAPLG00000016718	TSC2 (ENSAPLG00000007194) #7	NTHL1 (ENSAPLG00000008412) #8	NHERF2 (ENSAPLG00000008441) #9	ZNF598 (ENSAPLG00000008877) #11	SYNGR3 (ENSAPLG00000019392) #12	ENSAPLG00000030749	ENSAPLG00000029299 #14	TBL3 (ENSAPLG00000008515) #15	RPS2 (ENSAPLG00000008455) ##17	NDUFB10 (ENSAPLG00000008454) #18	RPL3L (ENSAPLG00000008390) #19	ENSAPLG00000018980	MSRB1 (ENSAPLG00000021117) #20	HS3ST6 (ENSAPLG00000017464) #21	ENSAPLG00000008347 #22	FAHD1 (ENSAPLG00000024457) #23	MSLNL (ENSAPLG00000021911)	ENSAPLG00000012415	CIAO3 (ENSAPLG00000012541)	ENSAPLG00000018609	HAGH (ENSAPLG00000008216) #24	GNG13 (ENSAPLG00000011862)	ENSAPLG00000011695	ENSAPLG00000019481	LMF1 (ENSAPLG00000003654)	SOX8 (ENSAPLG00000003216)	SSTR5 (ENSAPLG00000001784)	C1QTNF8 (ENSAPLG00000020620)	TEKT4 (ENSAPLG00000002857)	ENSAPLG00000021378
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00940000175728	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00950000183139.C #7	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000159176 #24	ENSGT00940000160452 #23	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Turkey	MODERN SPECIES	7	ENSMGAG00000018514	ENSMGAG00000015556	ENSMGAG00000005341	ENSMGAG00000018346	ENSMGAG00000005353	ENSMGAG00000005411	ENSMGAG00000005364	ENSMGAG00000005413	ENSMGAG00000005447	ENSMGAG00000005464	ENSMGAG00000005483	ENSMGAG00000005534	ENSMGAG00000005509	ENSMGAG00000021125	HAGH (ENSMGAG00000020966) #24	ENSMGAG00000005544 #22	ENSMGAG00000015559 #23	HS3ST6 (ENSMGAG00000006773) #21	MSRB1 (ENSMGAG00000021545) #20	ENSMGAG00000005632	ENSMGAG00000005622 #18	ENSMGAG00000005601 #19	ENSMGAG00000005578	ENSMGAG00000020469 ##17	ENSMGAG00000005762 #14	TBL3 (ENSMGAG00000005694) #15	ENSMGAG00000005803 #11	SYNGR3 (ENSMGAG00000018829) #12	ENSMGAG00000005855 #8	NHERF2 (ENSMGAG00000005833) #9	TSC2 (ENSMGAG00000005868) #7
Chicken	MODERN SPECIES	5	TSC2 (ENSGALG00010017930) #7	NTHL1 (ENSGALG00010017909) #8	NHERF2 (ENSGALG00010017898) #9	NPW (ENSGALG00010017136)	ZNF598 (ENSGALG00010017038) #11	SYNGR3 (ENSGALG00010017012) #12	GFER (ENSGALG00010016986) #13	NOXO1 (ENSGALG00010018902) #14	TBL3 (ENSGALG00010018883) #15	RPS2 (ENSGALG00010018867) ##17	NDUFB10 (ENSGALG00010018852) #18	RPL3L (ENSGALG00010018839) #19	ENSGALG00010018799	MSRB1 (ENSGALG00010018774) #20	HS3ST6 (ENSGALG00010018729) #21	ENSGALG00010018717 #22	HAGH (ENSGALG00010018649) #24	FAHD1 (ENSGALG00010018618) #23	HAGHL (ENSGALG00010018607)	NARFL (ENSGALG00010018577)	ENSGALG00010018558	ENSGALG00010018518	RPUSD1 (ENSGALG00010018513)	CHTF18 (ENSGALG00010018505)	GNG13 (ENSGALG00010018496)	ENSGALG00010018487	ENSGALG00010018478	LMF1 (ENSGALG00010018472)	SOX8 (ENSGALG00010017127)	SSTR5 (ENSGALG00010017479)	C1QTNF8 (ENSGALG00010017487)
Japanese quail	MODERN SPECIES	5	NTHL1 (ENSCJPG00005005626) #8	NHERF2 (ENSCJPG00005005625) #9	ENSCJPG00005005624	ZNF598 (ENSCJPG00005005623) #11	SYNGR3 (ENSCJPG00005005622) #12	ENSCJPG00005005621	GFER (ENSCJPG00005005619) #13	NOXO1 (ENSCJPG00005005616) #14	TBL3 (ENSCJPG00005005614) #15	RPS2 (ENSCJPG00005005612) ##17	NDUFB10 (ENSCJPG00005005611) #18	RPL3L (ENSCJPG00005005610) #19	ENSCJPG00005005607	MSRB1 (ENSCJPG00005005606) #20	HS3ST6 (ENSCJPG00005005605) #21	ENSCJPG00005005595 #22	FAHD1 (ENSCJPG00005005586) #23	HAGH (ENSCJPG00005005582) #24	HAGHL (ENSCJPG00005005580)	CIAO3 (ENSCJPG00005005572)	MSLN (ENSCJPG00005005570)	ENSCJPG00005005567	RPUSD1 (ENSCJPG00005005566)	CHTF18 (ENSCJPG00005005558)	GNG13 (ENSCJPG00005005553)	ENSCJPG00005005548	ENSCJPG00005005544	LMF1 (ENSCJPG00005005535)	SOX8 (ENSCJPG00005005532)	SSTR5 (ENSCJPG00005005525)	C1QTNF8 (ENSCJPG00005005521)
African ostrich	MODERN SPECIES	303	TSC2 (ENSSCUG00000001299) #7	NTHL1 (ENSSCUG00000001302) #8	NHERF2 (ENSSCUG00000001303) #9	ZNF598 (ENSSCUG00000001304) #11	SYNGR3 (ENSSCUG00000001306) #12	ENSSCUG00000001307 #13	ENSSCUG00000001309 #13	NOXO1 (ENSSCUG00000001311) #14	TBL3 (ENSSCUG00000001313) #15	RPS2 (ENSSCUG00000001317) ##17	NDUFB10 (ENSSCUG00000001319) #18	RPL3L (ENSSCUG00000001320) #19	ENSSCUG00000001324	MSRB1 (ENSSCUG00000001325) #20	HS3ST6 (ENSSCUG00000001326) #21	ENSSCUG00000001330 #22	FAHD1 (ENSSCUG00000001333) #23	HAGH (ENSSCUG00000001335) #24	CIAO3 (ENSSCUG00000001337)
Australian saltwater crocodile	MODERN SPECIES	46	TSC2 (ENSCPRG00005012774) #7	NTHL1 (ENSCPRG00005014823) #8	NHERF2 (ENSCPRG00005014828) #9	ZNF598 (ENSCPRG00005014838) #11	SYNGR3 (ENSCPRG00005014849) #12	ENSCPRG00005014852 #13	ENSCPRG00005014855 #13	NOXO1 (ENSCPRG00005014858) #14	TBL3 (ENSCPRG00005014863) #15	RPS2 (ENSCPRG00005014874) ##17	NDUFB10 (ENSCPRG00005014877) #18	RPL3L (ENSCPRG00005014882) #19	ENSCPRG00005014889	MSRB1 (ENSCPRG00005014891) #20	HS3ST6 (ENSCPRG00005014894) #21	ENSCPRG00005014901 #22	FAHD1 (ENSCPRG00005014926) #23	HAGH (ENSCPRG00005014931) #24	HAGHL (ENSCPRG00005014932)	CIAO3 (ENSCPRG00005014936)	MSLN (ENSCPRG00005014948)	RPUSD1 (ENSCPRG00005014953)	CHTF18 (ENSCPRG00005014962)	GNG13 (ENSCPRG00005014982)	ENSCPRG00005014986	ENSCPRG00005015005	ENSCPRG00005015009	SOX8 (ENSCPRG00005015014)	SSTR5 (ENSCPRG00005015016)	C1QTNF8 (ENSCPRG00005015018)	TEKT4 (ENSCPRG00005015022)
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a.c	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00510000047513 #8	ENSGT00950000182849.B.c.a #9	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a.c	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B	ENSGT00960000188336
Goode s thornscrub tortoise	MODERN SPECIES	1	NTHL1 (ENSGEVG00005009785) #8	NHERF2 (ENSGEVG00005009760) #9	ENSGEVG00005009733	ZNF598 (ENSGEVG00005009706) #11	SYNGR3 (ENSGEVG00005009679) #12	ENSGEVG00005009662 #13	ENSGEVG00005009624 #13	NOXO1 (ENSGEVG00005009476) #14	TBL3 (ENSGEVG00005009369) #15	RPS2 (ENSGEVG00005009296) ##17	NDUFB10 (ENSGEVG00005014052) #18	RPL3L (ENSGEVG00005013969) #19	ENSGEVG00005013809	MSRB1 (ENSGEVG00005013781) #20	HS3ST6 (ENSGEVG00005013758) #21	ENSGEVG00005013531 #22	FAHD1 (ENSGEVG00005013493) #23	HAGH (ENSGEVG00005013443) #24	HAGHL (ENSGEVG00005013402)	CIAO3 (ENSGEVG00005013374)	MSLN (ENSGEVG00005013327)	RPUSD1 (ENSGEVG00005013301)	CHTF18 (ENSGEVG00005013227)	GNG13 (ENSGEVG00005013181)	ENSGEVG00005013139	ENSGEVG00005013107	ENSGEVG00005013085	SOX8 (ENSGEVG00005013073)	SSTR5 (ENSGEVG00005013056)	C1QTNF8 (ENSGEVG00005013036)	TEKT4 (ENSGEVG00005012887)
Abingdon island giant tortoise	MODERN SPECIES	2387	NHERF2 (ENSCABG00000020825) #9	ENSCABG00000020830	ZNF598 (ENSCABG00000020834) #11	SYNGR3 (ENSCABG00000020840) #12	ENSCABG00000020842 #13	ENSCABG00000020843 #13	NOXO1 (ENSCABG00000020846) #14	TBL3 (ENSCABG00000020850) #15	RPS2 (ENSCABG00000020854) ##17	NDUFB10 (ENSCABG00000020856) #18	RPL3L (ENSCABG00000020860) #19	ENSCABG00000020884	ENSCABG00000020886	MSRB1 (ENSCABG00000020887) #20	HS3ST6 (ENSCABG00000020889) #21	ENSCABG00000020890 #22	FAHD1 (ENSCABG00000020892) #23	HAGH (ENSCABG00000020896) #24	HAGHL (ENSCABG00000020899)	CIAO3 (ENSCABG00000020903)	MSLN (ENSCABG00000020913)	ENSCABG00000020921	ENSCABG00000020923	CHTF18 (ENSCABG00000020924)	GNG13 (ENSCABG00000020927)	ENSCABG00000020933	ENSCABG00000020938	SOX8 (ENSCABG00000020941)	SSTR5 (ENSCABG00000020943)	C1QTNF8 (ENSCABG00000020944)	ENSCABG00000020945
Emydidae	ANCESTRAL SPECIES	12	ENSGT00950000182849.B.c.a #9	ENSGT00940000158204.b #10	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979.b #13	ENSGT00390000001979.a #13	ENSGT00940000158812 #14	ENSGT00940000157651 #15	ENSGT00940000153095.g.b.b ##17	ENSGT00940000153095.h ##17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a.c	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00940000167465	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Three-toed box turtle	MODERN SPECIES	37	TSC2 (ENSTMTG00000012679) #7	NTHL1 (ENSTMTG00000013946) #8	NHERF2 (ENSTMTG00000013960) #9	NPW (ENSTMTG00000013979) #10	ZNF598 (ENSTMTG00000013997) #11	SYNGR3 (ENSTMTG00000014018) #12	ENSTMTG00000014026 #13	ENSTMTG00000014038	ENSTMTG00000014051 #13	NOXO1 (ENSTMTG00000014065) #14	TBL3 (ENSTMTG00000014086) #15	RPL3L (ENSTMTG00000014117) #19	ENSTMTG00000014167	MSRB1 (ENSTMTG00000014253) #20	HS3ST6 (ENSTMTG00000014265) #21	ENSTMTG00000014282 #22	FAHD1 (ENSTMTG00000014378) #23	HAGH (ENSTMTG00000014389) #24	HAGHL (ENSTMTG00000014410)	CIAO3 (ENSTMTG00000014433)	MSLN (ENSTMTG00000014493)	RPUSD1 (ENSTMTG00000014524)	ENSTMTG00000014532	GNG13 (ENSTMTG00000014572)	ENSTMTG00000014591	ENSTMTG00000014647	ENSTMTG00000014667	SOX8 (ENSTMTG00000014677)	SSTR5 (ENSTMTG00000014688)	C1QTNF8 (ENSTMTG00000014696)	TEKT4 (ENSTMTG00000014709)
painted turtle	MODERN SPECIES	2421	NTHL1 (ENSCPBG00000000500) #8	NHERF2 (ENSCPBG00000000484) #9	NPW (ENSCPBG00000000448) #10	ZNF598 (ENSCPBG00000000420) #11	SYNGR3 (ENSCPBG00000000410) #12	ENSCPBG00000000392 #13	ENSCPBG00000000320 #13	NOXO1 (ENSCPBG00000000284) #14	TBL3 (ENSCPBG00000000253) #15	ENSCPBG00000021147 ##17	NDUFB10 (ENSCPBG00000021145) #18	RPL3L (ENSCPBG00000021144) #19	ENSCPBG00000021142	MSRB1 (ENSCPBG00000021139) #20	HS3ST6 (ENSCPBG00000021136) #21	ENSCPBG00000021131 #22	FAHD1 (ENSCPBG00000021129) #23	HAGH (ENSCPBG00000021127) #24	HAGHL (ENSCPBG00000021125)	CIAO3 (ENSCPBG00000021121)	ENSCPBG00000021115	MSLN (ENSCPBG00000021104)	MSLNL (ENSCPBG00000021103)	RPUSD1 (ENSCPBG00000021101)	ENSCPBG00000021098	GNG13 (ENSCPBG00000021095)	ENSCPBG00000021089	ENSCPBG00000021085	ENSCPBG00000021073	ENSCPBG00000021081	SOX8 (ENSCPBG00000021068)
Chinese turtle	MODERN SPECIES	1538	PKD1 (ENSPSIG00000006724)	TSC2 (ENSPSIG00000012813) #7	NTHL1 (ENSPSIG00000016854) #8	NHERF2 (ENSPSIG00000017205) #9	ENSPSIG00000017488	ZNF598 (ENSPSIG00000017576) #11	SYNGR3 (ENSPSIG00000006000) #12	GFER (ENSPSIG00000008341) #13	NOXO1 (ENSPSIG00000009816) #14	TBL3 (ENSPSIG00000013024) #15	RPS2 (ENSPSIG00000006759) ##17	NDUFB10 (ENSPSIG00000007677) #18	RPL3L (ENSPSIG00000009158) #19	MSRB1 (ENSPSIG00000012515) #20	HS3ST6 (ENSPSIG00000001337) #21	ENSPSIG00000012787 #22	FAHD1 (ENSPSIG00000001342) #23	HAGH (ENSPSIG00000013336) #24	HAGHL (ENSPSIG00000013687)	CIAO3 (ENSPSIG00000013738)	ENSPSIG00000013833	MSLN (ENSPSIG00000013858)	ENSPSIG00000013864	MSLNL (ENSPSIG00000013875)	RPUSD1 (ENSPSIG00000013945)	CHTF18 (ENSPSIG00000014337)	GNG13 (ENSPSIG00000014743)
Lepidosauria	ANCESTRAL SPECIES	22															ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00960000188336
Episquamata	ANCESTRAL SPECIES	8	ENSGT00510000048539	ENSGT00550000074885	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00990000207890	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00950000182894.B	ENSGT00960000188336	ENSGT00940000163090	ENSGT00940000160265	ENSGT00940000159920	ENSGT00530000063702.b	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00940000175728	ENSGT00510000047678 #20	ENSGT00940000164352	ENSGT00390000017606.a.b #19	ENSGT00390000006348 #18	ENSGT00940000153095.h ##17
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00510000048539	ENSGT00550000074885	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00990000207890	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00960000188336	ENSGT00950000182894.B	ENSGT00940000163090	ENSGT00940000160265	ENSGT00940000159920	ENSGT00530000063702.b	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000157625.b	ENSGT00940000157690	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00990000207890	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00960000188336	ENSGT00950000182894.B	ENSGT00940000163090	ENSGT00940000160265	ENSGT00940000159920	ENSGT00530000063702.b	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.a	ENSGT00940000153514.a.a	ENSGT00550000074885	ENSGT00510000048539	ENSGT00390000011615.B	ENSGT00940000160685	ENSGT01010000228880	ENSGT00990000211170	ENSGT00940000163876	ENSGT00940000164788	ENSGT00390000008647	ENSGT01030000234566.e.a	ENSGT00940000160173
Indian cobra	MODERN SPECIES	15	GRID2IP (ENSNNAG00000014970)	SLC5A11 (ENSNNAG00000015189)	TMEM186 (ENSNNAG00000016202)	PMM2 (ENSNNAG00000016208)	CARHSP1 (ENSNNAG00000016221)	ENSNNAG00000016224	USP7 (ENSNNAG00000016232)	HAPSTR1 (ENSNNAG00000016263)	TEKT4 (ENSNNAG00000016272)	ENSNNAG00000016288	C1QTNF8 (ENSNNAG00000016293)	SSTR5 (ENSNNAG00000016297)	SOX8 (ENSNNAG00000016303)	ENSNNAG00000016313	HS3ST6 (ENSNNAG00000016331) #21	ENSNNAG00000016334 #22	FAHD1 (ENSNNAG00000016359) #23	HAGH (ENSNNAG00000016362) #24	HAGHL (ENSNNAG00000016378)	CIAO3 (ENSNNAG00000016390)	ABAT (ENSNNAG00000016399)	METTL22 (ENSNNAG00000016408)	TMEM114 (ENSNNAG00000016414)	RBFOX1 (ENSNNAG00000016448)	ENSNNAG00000016627	ENSNNAG00000016634	ENSNNAG00000016637	ENSNNAG00000016640	ENSNNAG00000016647	ENSNNAG00000016657	ENSNNAG00000016676
Elapidae_a	ANCESTRAL SPECIES	21	ENSGT00940000157625.b	ENSGT00940000157690	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00990000207890	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00960000188336	ENSGT00950000182894.B	ENSGT00940000163090	ENSGT00940000160265	ENSGT00940000159920.c	ENSGT00530000063702.b	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.a	ENSGT00940000153514.a.a	ENSGT00550000074885	ENSGT00510000048539	ENSGT00390000011615.B	ENSGT00940000160685	ENSGT01010000228880	ENSGT00990000211170	ENSGT00940000163876	ENSGT00940000164788	ENSGT00390000008647	ENSGT01030000234566.e.a	ENSGT00940000160173
Acanthophiinae	ANCESTRAL SPECIES	28	ENSGT00940000157625.b	ENSGT00940000157690	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00990000207890	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00960000188336	ENSGT00950000182894.B	ENSGT00940000163090	ENSGT00940000160265	ENSGT00940000159920.c	ENSGT00530000063702.b	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924.a	ENSGT00940000153514.a.a	ENSGT00550000074885	ENSGT00510000048539	ENSGT00390000011615.B	ENSGT00940000160685	ENSGT01010000228880	ENSGT00990000211170	ENSGT00940000163876	ENSGT00940000164788	ENSGT00390000008647	ENSGT01030000234566.e.a	ENSGT00940000160173
Mainland tiger snake	MODERN SPECIES	376															HS3ST6 (ENSNSUG00000013769) #21	ENSNSUG00000013770 #22	FAHD1 (ENSNSUG00000013771) #23	HAGH (ENSNSUG00000013772) #24	ENSNSUG00000013773	CIAO3 (ENSNSUG00000013774)	ABAT (ENSNSUG00000013775)	ENSNSUG00000013776	TMEM114 (ENSNSUG00000013777)
Eastern brown snake	MODERN SPECIES	24	ZDHHC4 (ENSPTXG00000004228)	GRID2IP (ENSPTXG00000004232)	SLC5A11 (ENSPTXG00000004273)	TMEM186 (ENSPTXG00000006093)	PMM2 (ENSPTXG00000006095)	CARHSP1 (ENSPTXG00000006098)	ENSPTXG00000006099	USP7 (ENSPTXG00000006114)	HAPSTR1 (ENSPTXG00000006139)	ENSPTXG00000006141	TEKT4 (ENSPTXG00000006142)	C1QTNF8 (ENSPTXG00000006145)	SSTR5 (ENSPTXG00000006146)	LMF1 (ENSPTXG00000006149)	HS3ST6 (ENSPTXG00000006154) #21	ENSPTXG00000006157 #22	FAHD1 (ENSPTXG00000006163) #23	HAGH (ENSPTXG00000006164) #24	HAGHL (ENSPTXG00000006165)	CIAO3 (ENSPTXG00000006166)	ABAT (ENSPTXG00000006167)	METTL22 (ENSPTXG00000006174)	TMEM114 (ENSPTXG00000006178)	RBFOX1 (ENSPTXG00000006179)	ENSPTXG00000006182	ENSPTXG00000006183	ENSPTXG00000006185	ENSPTXG00000006186	ENSPTXG00000006189	ENSPTXG00000006191	NAGPA (ENSPTXG00000006195)
Blue-lipped sea krait	MODERN SPECIES	72																ENSLLTG00000013129 #22	FAHD1 (ENSLLTG00000013170) #23	HAGH (ENSLLTG00000013175) #24
Lizard	MODERN SPECIES	877	ENSACAG00000005434 #20	ENSACAG00000005364	ENSACAG00000005772	ENSACAG00000038170	ENSACAG00000005830	ENSACAG00000006056	ENSACAG00000039963	C1QTNF8 (ENSACAG00000006098)	SSTR5 (ENSACAG00000006102)	ENSACAG00000006071	ENSACAG00000041206	SOX8 (ENSACAG00000006111)	LMF1 (ENSACAG00000006136)	ENSACAG00000043876	HS3ST6 (ENSACAG00000006156) #21	ENSACAG00000006167 #22	FAHD1 (ENSACAG00000006190) #23	HAGH (ENSACAG00000006194) #24	ENSACAG00000038095	ROGDI (ENSACAG00000006239)	GLYR1 (ENSACAG00000006279)	UBN1 (ENSACAG00000006343)	PPL (ENSACAG00000006410)	ENSACAG00000025523	ENSACAG00000042853	SEC14L5 (ENSACAG00000006494)	ENSACAG00000006625	NAGPA (ENSACAG00000006721)	CARHSP1 (ENSACAG00000006749)	PMM2 (ENSACAG00000006756)	TMEM186 (ENSACAG00000038074)
Laterata	ANCESTRAL SPECIES	23	ENSGT00390000011615.B	ENSGT00510000048539	ENSGT00550000074885	ENSGT00390000000087	ENSGT00390000002918.a.a	ENSGT00390000000022.a	ENSGT00990000207890	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00950000182894.B	ENSGT00940000163090	ENSGT00940000160265	ENSGT00940000159920	ENSGT00530000063702.b	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.a.a	ENSGT00950000182957.b.a.b.b	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00940000175728	ENSGT00510000047678 #20	ENSGT00940000164352	ENSGT00390000017606.a.b #19	ENSGT00390000006348 #18	ENSGT00940000153095.h ##17
Common wall lizard	MODERN SPECIES	5	TMEM186 (ENSPMRG00000018158)	PMM2 (ENSPMRG00000018150)	CARHSP1 (ENSPMRG00000018141)	ENSPMRG00000018136	USP7 (ENSPMRG00000018011)	HAPSTR1 (ENSPMRG00000017981)	TEKT4 (ENSPMRG00000017976)	C1QTNF8 (ENSPMRG00000017970)	SSTR5 (ENSPMRG00000017967)	SOX8 (ENSPMRG00000017963)	ENSPMRG00000017959	ENSPMRG00000017954	HS3ST6 (ENSPMRG00000017951) #21	ENSPMRG00000017950	FAHD1 (ENSPMRG00000017946) #23	ENSPMRG00000017924 #22	CIAO3 (ENSPMRG00000017907)	MSLN (ENSPMRG00000017898)	ENSPMRG00000017883	RPUSD1 (ENSPMRG00000017874)	CHTF18 (ENSPMRG00000017775)	GNG13 (ENSPMRG00000017759)	ENSPMRG00000017754	MSRB1 (ENSPMRG00000017747) #20	ENSPMRG00000017745	ENSPMRG00000017734	RPL3L (ENSPMRG00000017720) #19	NDUFB10 (ENSPMRG00000017694) #18	ENSPMRG00000017672 ##17	TBL3 (ENSPMRG00000017242) #15	ENSPMRG00000017178 #14
Argentine black and white tegu	MODERN SPECIES	50	TMEM114 (ENSSMRG00000017000)	METTL22 (ENSSMRG00000016997)	ABAT (ENSSMRG00000016995)	TMEM186 (ENSSMRG00000016994)	PMM2 (ENSSMRG00000016993)	CARHSP1 (ENSSMRG00000016992)	ENSSMRG00000016991	USP7 (ENSSMRG00000016989)	HAPSTR1 (ENSSMRG00000016988)	TEKT4 (ENSSMRG00000016987)	C1QTNF8 (ENSSMRG00000016985)	SSTR5 (ENSSMRG00000016983)	SOX8 (ENSSMRG00000016979)	LMF1 (ENSSMRG00000016975)	HS3ST6 (ENSSMRG00000016973) #21	ENSSMRG00000016971 #22	FAHD1 (ENSSMRG00000016970) #23	HAGH (ENSSMRG00000016968) #24	HAGHL (ENSSMRG00000016965)	CIAO3 (ENSSMRG00000016964)	ENSSMRG00000016961	ENSSMRG00000016959	RPUSD1 (ENSSMRG00000016958)	CHTF18 (ENSSMRG00000016955)	GNG13 (ENSSMRG00000016951)	MSRB1 (ENSSMRG00000016950) #20	ENSSMRG00000016948	RPL3L (ENSSMRG00000016947) #19	NDUFB10 (ENSSMRG00000016946) #18	RPS2 (ENSSMRG00000016945) ##17	TBL3 (ENSSMRG00000016942) #15
tuatara	MODERN SPECIES	1383															HS3ST6 (ENSSPUG00000005225) #21	ENSSPUG00000005206 #22	HAGH (ENSSPUG00000005162) #24	CIAO3 (ENSSPUG00000005133)	ENSSPUG00000005126	ENSSPUG00000005119	ENSSPUG00000005107	CHTF18 (ENSSPUG00000005077)	GNG13 (ENSSPUG00000005066)	ENSSPUG00000005052	ENSSPUG00000005037	ENSSPUG00000005032	SOX8 (ENSSPUG00000005016)	ENSSPUG00000005012	C1QTNF8 (ENSSPUG00000005009)	ENSSPUG00000005001	ENSSPUG00000004995
Anura	ANCESTRAL SPECIES	35	ENSGT00940000167821	ENSGT00390000014178 #11	ENSGT00950000182935.B.b.d #12	ENSGT00390000001979 #13	ENSGT00940000158812.f #14	ENSGT00940000158812.e.a #14	ENSGT00940000158812.e.b #14	ENSGT00940000157651 #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095 #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b #19	ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000154768.B #21	ENSGT00390000001723 #22	ENSGT00940000160452 #23	ENSGT00940000159176 #24	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00950000182957.b.b	ENSGT00950000182957.b.a.a	ENSGT00510000048339	ENSGT00550000075029	ENSGT00530000064157.b	ENSGT00400000022459	ENSGT00530000063702.b	ENSGT00940000159920	ENSGT00940000160265	ENSGT00940000163090	ENSGT00950000182894.B
Frog	MODERN SPECIES	9	c1qtnf1 (ENSXETG00000005727)	ENSXETG00000044935	sstr5 (ENSXETG00000048473)	ENSXETG00000041852	sox8 (ENSXETG00000034823)	lmf1 (ENSXETG00000038231)	tex2.1 (ENSXETG00000007222)	ENSXETG00000041169	rpl3l (ENSXETG00000007221) #19	rps2 (ENSXETG00000007220) #17	rnf151 (ENSXETG00000036669) #16	tbl3 (ENSXETG00000007217) #15	noxo1 (ENSXETG00000007216) #14	msrb1 (ENSXETG00000047108) #20	hs3st6 (ENSXETG00000007214) #21	meiob (ENSXETG00000032247) #22	fahd1 (ENSXETG00000033843) #23	hagh (ENSXETG00000007202) #24	haghl (ENSXETG00000007200)	ciao3 (ENSXETG00000007191)	ENSXETG00000033077	ENSXETG00000035059	msln (ENSXETG00000032280)	ENSXETG00000048259	ENSXETG00000041509	rpusd1 (ENSXETG00000007184)	rpusd1 (ENSXETG00000039706)	chtf18 (ENSXETG00000005776)	gng13 (ENSXETG00000037394)	XB5835757 [provisional] (ENSXETG00000031000)	ENSXETG00000038644 #14
Leishan spiny toad	MODERN SPECIES	10	SYNGR3 (ENSLLEG00000023027) #12	GFER (ENSLLEG00000022989) #13	ENSLLEG00000022787 #14	ENSLLEG00000022754	ENSLLEG00000022698 #14	ENSLLEG00000022617 #14	TBL3 (ENSLLEG00000022466) #15	RNF151 (ENSLLEG00000022299) #16	RPS2 (ENSLLEG00000021994) #17	NDUFB10 (ENSLLEG00000021940) #18	RPL3L (ENSLLEG00000021835) #19	ENSLLEG00000021683	MSRB1 (ENSLLEG00000021637) #20	HS3ST6 (ENSLLEG00000021536) #21	ENSLLEG00000021442	ENSLLEG00000021238 #22	FAHD1 (ENSLLEG00000021199) #23	HAGH (ENSLLEG00000021023) #24	HAGHL (ENSLLEG00000020848)	CIAO3 (ENSLLEG00000020588)	ENSLLEG00000020382	ENSLLEG00000020344	ENSLLEG00000020068	RPUSD1 (ENSLLEG00000020014)	CHTF18 (ENSLLEG00000019787)	GNG13 (ENSLLEG00000019745)	ENSLLEG00000019141	ENSLLEG00000019092	LMF1 (ENSLLEG00000018723)	ENSLLEG00000018666	SOX8 (ENSLLEG00000018610)
Coelacanth	MODERN SPECIES	1108								ENSLACG00000022593	ENSLACG00000013383	RPS2 (ENSLACG00000013242) #17	NDUFB10 (ENSLACG00000013152) #18	RPL3L (ENSLACG00000012769) #19	ENSLACG00000012347	MSRB1 (ENSLACG00000011474) #20	ENSLACG00000022628	ENSLACG00000004002 #22	FAHD1 (ENSLACG00000003876) #23	HAGH (ENSLACG00000003240) #24	CIAO3 (ENSLACG00000001537)
Actinopterygii	ANCESTRAL SPECIES	622													ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000165237	ENSGT00390000001723 #22
Neopterygii	ANCESTRAL SPECIES	490													ENSGT00940000164352	ENSGT00510000047678 #20	ENSGT00940000165237	ENSGT00390000001723 #22
Osteoglossocephalai	ANCESTRAL SPECIES	397										ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22
Clupeocephala	ANCESTRAL SPECIES	83	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000178019	ENSGT00390000004394	ENSGT00940000165873
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161824	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT01000000215398	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000154590
Otophysi	ANCESTRAL SPECIES		ENSGT00940000161824	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000158812.j.a #14	ENSGT00530000063647.A.a #16	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a	ENSGT00940000178476	ENSGT00940000157809.j.a.e.b.b	ENSGT00940000154590
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000161824	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961.e	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000158812.j.a #14	ENSGT00530000063647.A.a #16	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b.c	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a
Channel catfish	MODERN SPECIES	4	PRVT (ENSIPUG00000002890)	bhlha15 (ENSIPUG00000002884)	TECPR1 (ENSIPUG00000002843)	Baiap2l1 (ENSIPUG00000002808)	nptx2 (ENSIPUG00000002783)	TRRAP (ENSIPUG00000002622)	Fam20c (ENSIPUG00000002578)	foxl3 (ENSIPUG00000002568)	tom1l2 (ENSIPUG00000002497)	atpaf2 (ENSIPUG00000002467)	noxo1 (ENSIPUG00000002454) #14	rnf151 (ENSIPUG00000002444) #16	ENSIPUG00000002420	NEURL2 (ENSIPUG00000002414)	msrb1b (ENSIPUG00000002403) #20	meiob (ENSIPUG00000002385) #22	mlst8 (ENSIPUG00000002358)	bricd5 (ENSIPUG00000002352)	Pgp (ENSIPUG00000002337)	zdhhc4 (ENSIPUG00000002328)	grid2ipb (ENSIPUG00000002303)	arhgap17 (ENSIPUG00000002195)	lcmt1 (ENSIPUG00000002016)	Aqp8 (ENSIPUG00000001986)	hbaa1 (ENSIPUG00000001974)	hbae4 (ENSIPUG00000001965)	ENSIPUG00000001940	foxj1b (ENSIPUG00000001934)	mgrn1 (ENSIPUG00000001861)	ubald1a (ENSIPUG00000001843)	ENSIPUG00000001839
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961.e	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000158812.j.a #14	ENSGT00530000063647.A.a #16	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046	ENSGT00940000157625.a.b.c	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.a	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a	ENSGT00940000154590	ENSGT00940000156278.se
Characoidei	ANCESTRAL SPECIES	50	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961.e	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000158812.j.a #14	ENSGT00530000063647.A.a #16	ENSGT00940000153095 #17	ENSGT00940000164352.a	ENSGT00510000047678.a.a.b #20	ENSGT00940000159689	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b.c	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b.a	ENSGT00940000154590	ENSGT00940000156278.se	ENSGT00940000164514.a	ENSGT00390000009925.a.k.b
Red-bellied piranha	MODERN SPECIES	111	ENSPNAG00000009748	bhlha15 (ENSPNAG00000006640)	TECPR1 (ENSPNAG00000009886)	baiap2l1a (ENSPNAG00000001352)	nptx2b (ENSPNAG00000009934)	trrap (ENSPNAG00000010139)	FAM20C (ENSPNAG00000010205)	foxl3 (ENSPNAG00000010226)	tom1l2 (ENSPNAG00000010290)	atpaf2 (ENSPNAG00000010405)	noxo1b (ENSPNAG00000010424) #14	RNF151 (ENSPNAG00000010442) #16	ENSPNAG00000010488	msrb1b (ENSPNAG00000010501) #20	neurl2 (ENSPNAG00000010511)	MEIOB (ENSPNAG00000010569) #22	mlst8 (ENSPNAG00000010603)	bricd5 (ENSPNAG00000006122)	pgp (ENSPNAG00000005451)	zdhhc4 (ENSPNAG00000010640)	grid2ipb (ENSPNAG00000001436)	arhgap17a (ENSPNAG00000001455)	lcmt1 (ENSPNAG00000001463)	aqp8a.1 (ENSPNAG00000010931)	aqp8a.2 (ENSPNAG00000010954)	hbae5 (ENSPNAG00000010963)	hbbe2 (ENSPNAG00000011240)	hbae4 (ENSPNAG00000011265)	ENSPNAG00000011269	ENSPNAG00000011365	foxj1b (ENSPNAG00000001702)
Electric eel	MODERN SPECIES	94													noxo1b (ENSEEEG00000009103) #14	neurl2 (ENSEEEG00000009104)	msrb1b (ENSEEEG00000009105) #20	ENSEEEG00000009107 #22	mlst8 (ENSEEEG00000009112)	bricd5 (ENSEEEG00000009127)	pgp (ENSEEEG00000009129)	zdhhc4 (ENSEEEG00000009130)	ENSEEEG00000009131	grid2ipb (ENSEEEG00000009133)	arhgap17a (ENSEEEG00000009151)	lcmt1 (ENSEEEG00000009258)	aqp8a.1 (ENSEEEG00000009264)	aqp8a.2 (ENSEEEG00000009497)	ENSEEEG00000009534	hbbe2 (ENSEEEG00000010084)	hbae4 (ENSEEEG00000010086)	ENSEEEG00000010162	foxj1b (ENSEEEG00000010164)
Cyprinoidei	ANCESTRAL SPECIES	26	ENSGT00940000161824	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000158812.j.a #14	ENSGT00530000063647.A.a #16	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.b	ENSGT00390000004394	ENSGT00940000165873	ENSGT00940000163663.B.b	ENSGT00730000110975	ENSGT00940000175733	ENSGT01030000236780
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	36	ENSGT00940000165760.c.b	ENSGT00940000161824.g	ENSGT00510000047886.a.a.b	ENSGT00940000153560.b.b.a.g.d	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a.b	ENSGT00390000017961.c	ENSGT00950000182951.A.a.a.c.a.a.e	ENSGT00940000162800.c	ENSGT00940000156940.b.d	ENSGT00390000009492.c	ENSGT00940000158812.j.a.f #14	ENSGT00940000164352.a.c	ENSGT00940000159689.d	ENSGT00510000047678.a.a.b.c #20	ENSGT00390000001723.g #22	ENSGT00940000160577.e	ENSGT00920000149163.f	ENSGT00940000157625.a.b.b	ENSGT00940000156201.a.a.b	ENSGT00940000156372.o	ENSGT00940000159304.f	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b.a	ENSGT00940000157809.j.a.e.b.a.a.b	ENSGT00940000157809.j.a.e.b.b.a.b	ENSGT00940000154590.c	ENSGT00940000156278.pe.b	ENSGT00940000164514.a.e	ENSGT00390000009925.a.k.b.a	ENSGT00390000008825.a.b.d
Cyprininae_a	ANCESTRAL SPECIES	37	ENSGT00940000165760.c.b	ENSGT00940000161824.g	ENSGT00510000047886.a.a.b	ENSGT00940000153560.b.b.a.g.d	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a.b	ENSGT00390000017961.c	ENSGT00950000182951.A.a.a.c.a.a.e	ENSGT00940000162800.c	ENSGT00940000156940.b.d	ENSGT00390000009492.c	ENSGT00940000158812.j.a.f #14	ENSGT00940000164352.a.c	ENSGT00940000159689.d	ENSGT00510000047678.a.a.b.c #20	ENSGT00390000001723.g #22	ENSGT00390000014795.h	ENSGT00940000160577.e	ENSGT00920000149163.f	ENSGT00940000157625.a.b.b	ENSGT00940000156201.a.a.b	ENSGT00940000156372.o	ENSGT00940000159304.f	ENSGT00940000163288.a.b.b.b.a.b.a	ENSGT00940000157809.j.a.e.b.a.a.b	ENSGT00940000157809.j.a.e.b.b.a.b	ENSGT00940000154590.c	ENSGT00940000156278.pe.b	ENSGT00940000164514.a.e	ENSGT00390000009925.a.k.b.a	ENSGT00390000008825.a.b.d
Golden-line barbel	MODERN SPECIES	179	ENSSGRG00000032081	TECPR1 (ENSSGRG00000032148)	bhlha15 (ENSSGRG00000032302)	baiap2l1a (ENSSGRG00000032307)	tmem130 (ENSSGRG00000032343)	nptx2b (ENSSGRG00000032347)	trrap (ENSSGRG00000032419)	FAM20C (ENSSGRG00000034780)	foxl3 (ENSSGRG00000034827)	tom1l2 (ENSSGRG00000034828)	atpaf2 (ENSSGRG00000034840)	noxo1b (ENSSGRG00000034927) #14	ENSSGRG00000034934	neurl2 (ENSSGRG00000034936)	msrb1b (ENSSGRG00000034937) #20	ENSSGRG00000034940 #22	MLST8 (ENSSGRG00000034942)	pgp (ENSSGRG00000034943)	zdhhc4 (ENSSGRG00000034945)	grid2ipb (ENSSGRG00000034946)	arhgap17a (ENSSGRG00000034956)	lcmt1 (ENSSGRG00000035494)	aqp8a.1 (ENSSGRG00000035496)	aqp8a.2 (ENSSGRG00000035498)	hbae5 (ENSSGRG00000035501)	ENSSGRG00000035542	hbbe3 (ENSSGRG00000035544)	hbae4 (ENSSGRG00000035545)	ENSSGRG00000035554
Common carp reference	MODERN SPECIES	44	bhlha15 (ENSCCRG00000065396)	ENSCCRG00000046025	baiap2l1a (ENSCCRG00000078973)	tmem130 (ENSCCRG00000048598)	nptx2b (ENSCCRG00000048602)	trrap (ENSCCRG00000048645)	ENSCCRG00000066826	foxl3 (ENSCCRG00000060007)	tom1l2 (ENSCCRG00000074603)	atpaf2 (ENSCCRG00000012945)	noxo1b (ENSCCRG00000045535) #14	ENSCCRG00000073528 #16	ENSCCRG00000019493	neurl2 (ENSCCRG00000019502)	msrb1b (ENSCCRG00000063380) #20	ENSCCRG00000019514 #22	ENSCCRG00000033064	mlst8 (ENSCCRG00000075392)	bricd5 (ENSCCRG00000061313)	zdhhc4 (ENSCCRG00000054917)	grid2ipb (ENSCCRG00000045065)	arhgap17a (ENSCCRG00000019362)	ENSCCRG00000017309	aqp8a.1 (ENSCCRG00000074292)	ENSCCRG00000047883	hbae5 (ENSCCRG00000047881)	hbbe2 (ENSCCRG00000068895)	hbbe3 (ENSCCRG00000047878)	hbae4 (ENSCCRG00000062969)	ENSCCRG00000054012	foxj1b (ENSCCRG00000047539)
Cyprininae	ANCESTRAL SPECIES	129	ENSGT00940000161824.h	ENSGT00510000047886.a.a.a	ENSGT00940000153560.b.b.a.g.c	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a.a	ENSGT00390000017961.d	ENSGT00950000182951.A.a.a.c.a.a.f	ENSGT00940000162800.d	ENSGT00940000156940.b.c	ENSGT00390000009492.d	ENSGT00940000158812.j.a.e #14	ENSGT00530000063647.A.a #16	ENSGT00940000164352.a.d	ENSGT00940000159689.c.a	ENSGT00510000047678.a.a.b.d #20	ENSGT00390000001723.h #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577.f	ENSGT00920000149163.e	ENSGT00940000157625.a.b.a	ENSGT00940000156201.a.a.a	ENSGT00940000156372.p	ENSGT00940000159304.e	ENSGT00940000163288.a.b.b.b.a.b.b	ENSGT00940000157809.j.a.e.b.a.a.a	ENSGT00940000157809.j.a.e.b.b.a.a	ENSGT00940000156278.pe.a	ENSGT00940000164514.a.f	ENSGT00390000009925.a.k.b.b	ENSGT00390000008825.b.b.d.a
Goldfish	MODERN SPECIES	3	ENSCARG00000002544	bhlha15 (ENSCARG00000002542)	TECPR1 (ENSCARG00000002492)	baiap2l1a (ENSCARG00000002462)	nptx2b (ENSCARG00000002452)	trrap (ENSCARG00000002352)	ENSCARG00000002297	FAM20C (ENSCARG00000002252)	foxl3 (ENSCARG00000002224)	tom1l2 (ENSCARG00000002047)	noxo1b (ENSCARG00000001976) #14	ENSCARG00000001965 #16	ENSCARG00000010669	neurl2 (ENSCARG00000010661)	msrb1b (ENSCARG00000010651) #20	MEIOB (ENSCARG00000010601) #22	bricd5 (ENSCARG00000010585)	pgp (ENSCARG00000010577)	grid2ipb (ENSCARG00000010421)	arhgap17a (ENSCARG00000010081)	lcmt1 (ENSCARG00000010022)	aqp8a.1 (ENSCARG00000010007)	ENSCARG00000009999	hbae5 (ENSCARG00000009995)	hbbe2 (ENSCARG00000009989)	hbbe3 (ENSCARG00000009985)	ENSCARG00000009981	ENSCARG00000009714	foxj1b (ENSCARG00000009691)	mgrn1a (ENSCARG00000009670)	ubald1a (ENSCARG00000009657)
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00940000165760.c.a	ENSGT00940000161824.h	ENSGT00510000047886.a.a.a	ENSGT00940000153560.b.b.a.g.c	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a.a	ENSGT00390000017961.d	ENSGT00950000182951.A.a.a.c.a.a.f	ENSGT00940000162800.d	ENSGT00940000156940.b.c	ENSGT00390000009492.d	ENSGT00940000158812.j.a.e #14	ENSGT00530000063647.A.a #16	ENSGT00940000164352.a.d	ENSGT00510000047678.a.a.b.d #20	ENSGT00390000001723.h #22	ENSGT00390000014795.g.a	ENSGT00930000150969.B.b	ENSGT00940000160577.f	ENSGT00920000149163.e	ENSGT00940000157625.a.b.a	ENSGT00940000156201.a.a.a	ENSGT00940000156372.p	ENSGT00940000159304.e	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b.b	ENSGT00940000157809.j.a.e.b.a.a.a	ENSGT00940000157809.j.a.e.b.b.a.a	ENSGT00940000157809.j.a.e.b.a.b	ENSGT00940000154590.d	ENSGT00940000156278.pe.a
Common carp reference	MODERN SPECIES	25	pvalb3 (ENSCCRG00000020651)	pvalb2 (ENSCCRG00000008312)	ENSCCRG00000020627	bhlha15 (ENSCCRG00000078238)	ENSCCRG00000013843	baiap2l1a (ENSCCRG00000047978)	nptx2b (ENSCCRG00000055764)	trrap (ENSCCRG00000013389)	ENSCCRG00000056820	foxl3 (ENSCCRG00000029184)	tom1l2 (ENSCCRG00000045596)	atpaf2 (ENSCCRG00000014390)	noxo1b (ENSCCRG00000073755) #14	ENSCCRG00000045524	ENSCCRG00000014399 #16	ENSCCRG00000019530 #22	mlst8 (ENSCCRG00000019540)	bricd5 (ENSCCRG00000056246)	pgp (ENSCCRG00000081685)	zdhhc4 (ENSCCRG00000076926)	grid2ipb (ENSCCRG00000019630)	arhgap17a (ENSCCRG00000015365)	lcmt1 (ENSCCRG00000022341)	aqp8a.1 (ENSCCRG00000022389)	aqp8a.2 (ENSCCRG00000054783)	hbae5 (ENSCCRG00000048228)	hbbe2 (ENSCCRG00000048225)	hbbe3 (ENSCCRG00000026395)	hbae4 (ENSCCRG00000076628)	hbae4 (ENSCCRG00000048220)	ENSCCRG00000047557
Golden-line barbel	MODERN SPECIES	56	ENSSGRG00000008742	bhlha15 (ENSSGRG00000008740)	TECPR1 (ENSSGRG00000008477)	baiap2l1a (ENSSGRG00000008419)	ENSSGRG00000008413	nptx2b (ENSSGRG00000008368)	trrap (ENSSGRG00000006698)	ENSSGRG00000006512	foxl3 (ENSSGRG00000006511)	tom1l2 (ENSSGRG00000006502)	atpaf2 (ENSSGRG00000006491)	noxo1b (ENSSGRG00000006488) #14	ENSSGRG00000006487 #16	ENSSGRG00000006485	msrb1b (ENSSGRG00000006484) #20	ENSSGRG00000006483 #22	mlst8 (ENSSGRG00000006376)	bricd5 (ENSSGRG00000006365)	pgp (ENSSGRG00000006362)	zdhhc4 (ENSSGRG00000006357)	grid2ipb (ENSSGRG00000006351)	arhgap17a (ENSSGRG00000003769)	lcmt1 (ENSSGRG00000003639)	aqp8a.1 (ENSSGRG00000003579)	aqp8a.2 (ENSSGRG00000003576)	hbbe2 (ENSSGRG00000003468)	hbae4 (ENSSGRG00000003456)	ENSSGRG00000001515	foxj1b (ENSSGRG00000001419)	mgrn1a (ENSSGRG00000000786)	ubald1a (ENSSGRG00000000782)
Zebrafish	MODERN SPECIES	3	pvalb2 (ENSDARG00000002768)	bhlha15 (ENSDARG00000045166)	ENSDARG00000062515	baiap2l1a (ENSDARG00000029305)	tmem130 (ENSDARG00000103789)	nptx2b (ENSDARG00000045164)	trrap (ENSDARG00000100623)	FAM20C (ENSDARG00000090338)	foxl3 (ENSDARG00000086055)	tom1l2 (ENSDARG00000009217)	atpaf2 (ENSDARG00000056270)	noxo1b (ENSDARG00000056374) #14	ENSDARG00000075046 #16	ENSDARG00000078132	neurl2 (ENSDARG00000062446)	MEIOB (ENSDARG00000062442) #22	msrb1b (ENSDARG00000045160) #20	mlst8 (ENSDARG00000003167)	bricd5 (ENSDARG00000056247)	ENSDARG00000114422	pgp (ENSDARG00000029695)	zdhhc4 (ENSDARG00000045159)	grid2ipb (ENSDARG00000095603)	ENSDARG00000045157	rgs9b (ENSDARG00000045156)	mrtfab (ENSDARG00000076229)	ENSDARG00000088204	desi1b (ENSDARG00000089529)	xrcc6 (ENSDARG00000071551)	josd1 (ENSDARG00000071548)	CBX7 (ENSDARG00000087181)
Clupeiformes	ANCESTRAL SPECIES	5	ENSGT00390000000713	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT01000000215398	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000154590	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00390000004394
Atlantic herring	MODERN SPECIES	15	tmem130 (ENSCHAG00000021985)	ENSCHAG00000021994	nptx2b (ENSCHAG00000022009)	trrap (ENSCHAG00000022036)	FAM20C (ENSCHAG00000023040)	foxl3 (ENSCHAG00000023206)	tom1l2 (ENSCHAG00000023210)	atpaf2 (ENSCHAG00000023232)	GID4 (ENSCHAG00000023244)	noxo1b (ENSCHAG00000023267) #14	noxo1b (ENSCHAG00000023282) #14	RNF151 (ENSCHAG00000023295) #16	ENSCHAG00000023302	neurl2 (ENSCHAG00000023336)	msrb1b (ENSCHAG00000023349) #20	ENSCHAG00000023356 #22	mlst8 (ENSCHAG00000023370)	bricd5 (ENSCHAG00000023403)	pgp (ENSCHAG00000023408)	zdhhc4 (ENSCHAG00000023418)	grid2ipb (ENSCHAG00000023427)	arhgap17a (ENSCHAG00000023465)	lcmt1 (ENSCHAG00000023657)	aqp8a.1 (ENSCHAG00000023729)	ENSCHAG00000023741	hbae5 (ENSCHAG00000023742)	hbbe3 (ENSCHAG00000023745)	ENSCHAG00000023748	ENSCHAG00000023751	hbae4 (ENSCHAG00000023754)	ENSCHAG00000002681
Euteleosteomorpha	ANCESTRAL SPECIES	45	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000178019	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00940000173220
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT00940000169563	ENSGT00390000017961.db	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.b	ENSGT00940000163474	ENSGT00940000178019	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00940000173220	ENSGT00390000004394	ENSGT00940000165873	ENSGT00940000163663.B.b
Salmoninae	ANCESTRAL SPECIES	147														ENSGT00940000164352.a.g	ENSGT00940000165237.b.b.d	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b	ENSGT00390000014795	ENSGT00930000150969.B.f	ENSGT00940000160577.a	ENSGT00920000149163.i	ENSGT00940000157625.a.b.f	ENSGT00940000156201.a.a.e	ENSGT00940000156372.s	ENSGT00940000165638.b.a.a	ENSGT00940000157809.j.a.e.b.k	ENSGT01000000215398.b	ENSGT00940000154590	ENSGT00940000164514.a.c.a	ENSGT00390000008825.a.c.a.a	ENSGT00940000163474
Salmoninae_a	ANCESTRAL SPECIES	95	ENSGT00940000163144.a.b.d.b.b.b	ENSGT00940000165760.a	ENSGT00940000161824.f	ENSGT00510000047886.a.a.c	ENSGT00940000153560.b.b.a.g.h	ENSGT00950000183188.A.b	ENSGT00390000017961.eb	ENSGT00950000182951.A.a.a.c.a.a.b	ENSGT00940000162800.f	ENSGT00940000156940.b.h	ENSGT00390000009492.f	ENSGT00500000044930.e.a.d	ENSGT00940000158812.j.a.p #14	ENSGT00940000164352.a.g	ENSGT00940000165237.b.b.d	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b	ENSGT00390000014795	ENSGT00930000150969.B.f	ENSGT00940000160577.a	ENSGT00920000149163.i	ENSGT00940000157625.a.b.f	ENSGT00940000156201.a.a.e	ENSGT00940000156372.s	ENSGT00940000165638.b.a.a	ENSGT00940000159304.o.a	ENSGT00940000165638.a.a.d	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000157809.j.a.e.b.k	ENSGT01000000215398.b	ENSGT00940000154590.e
Salmo	ANCESTRAL SPECIES	31	ENSGT00940000161824.f	ENSGT00510000047886.a.a.c	ENSGT00940000153560.b.b.a.g.h	ENSGT00950000183188.A.b.a	ENSGT00390000017961.eb	ENSGT01100000263907	ENSGT00950000182951.A.a.a.c.a.a.b	ENSGT00940000162800.f	ENSGT00940000158431.a.a.a.a.b.a.c.a.c	ENSGT00940000156940.b.h	ENSGT00390000009492.f	ENSGT00500000044930.e.a.d	ENSGT00940000158812.j.a.p #14	ENSGT00940000164352.a.g	ENSGT00940000165237.b.b.d	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b	ENSGT00930000150969.B.e	ENSGT00390000014795	ENSGT00930000150969.B.f	ENSGT00940000160577.a	ENSGT00920000149163.i	ENSGT00940000157625.a.b.f	ENSGT00940000156201.a.a.e	ENSGT00940000156372.s	ENSGT00940000165638.b.a.a	ENSGT00940000165638.a.a.d	ENSGT00940000163288.a.b.b.b.a.a.a.b.b	ENSGT00940000157809.j.a.e.b.k	ENSGT01000000215398.b	ENSGT00940000154590.e
River trout	MODERN SPECIES	9	TECPR1 (ENSSTUG00000003757)	baiap2l1a (ENSSTUG00000003879)	tmem130 (ENSSTUG00000003928)	ENSSTUG00000004035	ENSSTUG00000004072	ENSSTUG00000004096	foxl3 (ENSSTUG00000004429)	tom1l2 (ENSSTUG00000004445)	ENSSTUG00000004481	atpaf2 (ENSSTUG00000004490)	GID4 (ENSSTUG00000004553)	noxo1b (ENSSTUG00000004561) #14	ENSSTUG00000004582 #16	ENSSTUG00000004596	ENSSTUG00000004711	MEIOB (ENSSTUG00000004716) #22	pgrmc1 (ENSSTUG00000004753)	MLST8 (ENSSTUG00000004762)	bricd5 (ENSSTUG00000004776)	ENSSTUG00000004801	ENSSTUG00000004811	zdhhc4 (ENSSTUG00000004831)	grid2ipb (ENSSTUG00000004857)	ENSSTUG00000004895	arhgap17a (ENSSTUG00000004922)	lcmt1 (ENSSTUG00000005702)	ENSSTUG00000005708	ENSSTUG00000005718	ENSSTUG00000005731	ENSSTUG00000005744	foxj1b (ENSSTUG00000005853)
Atlantic salmon	MODERN SPECIES		tmem130 (ENSSSAG00000111828)	tmem130 (ENSSSAG00000119219)	ENSSSAG00000101241	ENSSSAG00000000375	ENSSSAG00000106165	ENSSSAG00000000315	foxl3 (ENSSSAG00000111353)	ENSSSAG00000097777	tom1l2 (ENSSSAG00000000172)	atpaf2 (ENSSSAG00000000161)	cq039 (ENSSSAG00000000149)	noxo1b (ENSSSAG00000102274) #14	ENSSSAG00000000136 #16	ENSSSAG00000000132	ENSSSAG00000000122	meiob (ENSSSAG00000005413) #22	ENSSSAG00000102775	bricd5 (ENSSSAG00000005398)	ENSSSAG00000005390	ENSSSAG00000005384	grid2ipb (ENSSSAG00000005353)	ENSSSAG00000107128	arhgap17a (ENSSSAG00000005208)	ENSSSAG00000095092	ENSSSAG00000117726	aqp8aa1 (ENSSSAG00000005186)	ENSSSAG00000005171	ENSSSAG00000100077	rhbl4 (ENSSSAG00000004938)	foxj1b (ENSSSAG00000105536)	ENSSSAG00000107705
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00940000163144.a.b.d.a.a	ENSGT00940000180063	ENSGT00940000161824.f	ENSGT00510000047886.a.a.c	ENSGT00940000153560.b.b.a.g.h	ENSGT00950000183188.A.b	ENSGT00390000017961.eb	ENSGT00950000182951.A.a.a.c.a.a.b	ENSGT00940000162800.f	ENSGT00940000156940.b.h	ENSGT00390000009492.f	ENSGT00500000044930.e.a.d	ENSGT00940000158812.j.a.p #14	ENSGT00940000164352.a.g	ENSGT00940000165237.b.b.d	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b	ENSGT01000000222128	ENSGT00940000157625.a.b.e	ENSGT00940000156201.a.a.f	ENSGT00940000156372.t	ENSGT00940000159304.o.b	ENSGT00940000165638.b.a.b	ENSGT01000000215398.a	ENSGT00940000157809.j.a.e.b.l	ENSGT00940000154590.f	ENSGT00940000156278.q	ENSGT00940000164514.a.c.b	ENSGT00390000008825.a.c.a.b	ENSGT00950000182979.a.b.b.b.b.i.b.f	ENSGT00940000165873.c
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00390000009492.f	ENSGT00500000044930.e.a.d	ENSGT00940000158812.j.a.p #14	ENSGT00940000158812.j.b.b #14	ENSGT00940000157651.g.a #15	ENSGT00530000063647.A.a #16	ENSGT00940000153095.c.a #17	ENSGT00390000006348 #18	ENSGT00390000017606.a.b.h #19	ENSGT00990000204633.a.a.a.b	ENSGT00940000164352.b.r	ENSGT00550000074902.o	ENSGT00940000153432.A.a.o.b	ENSGT00940000164352.a.g	ENSGT00940000165237.b.b.d	ENSGT00390000001723 #22	ENSGT00940000160619.l.a.b	ENSGT00960000193203	ENSGT01000000222128	ENSGT00940000157625.a.b.e	ENSGT00940000156201.a.a.f	ENSGT00940000156372.t	ENSGT00940000165638.b.a.b	ENSGT00940000157809.j.a.e.b.l	ENSGT01000000215398.a	ENSGT00940000156278.q	ENSGT00940000164514.a.c.b	ENSGT00390000008825.a.c.a.b	ENSGT00950000182979.a.b.b.b.b.i.b.f	ENSGT00940000165873.c	ENSGT00940000163663.B.b.c.a
Coho salmon	MODERN SPECIES	2	ENSOKIG00005006602	bhlha15 (ENSOKIG00005006636)	TECPR1 (ENSOKIG00005006648)	baiap2l1a (ENSOKIG00005006714)	tmem130 (ENSOKIG00005006751)	ENSOKIG00005006818	FAM20C (ENSOKIG00005006904)	foxl3 (ENSOKIG00005006948)	tom1l2 (ENSOKIG00005006959)	atpaf2 (ENSOKIG00005006994)	GID4 (ENSOKIG00005007022)	noxo1b (ENSOKIG00005007064) #14	ENSOKIG00005007116 #16	ENSOKIG00005007133	ENSOKIG00005007181	MEIOB (ENSOKIG00005007198) #22	ENSOKIG00005007239	ENSOKIG00005007251	GRID2IP (ENSOKIG00005007267)	ENSOKIG00005007325	ENSOKIG00005007357	arhgap17a (ENSOKIG00005007461)	aqp8a.1 (ENSOKIG00005009284)	ENSOKIG00005009297	ENSOKIG00005009321	ENSOKIG00005009329	hbae4 (ENSOKIG00005009341)	ENSOKIG00005009450	foxj1b (ENSOKIG00005010614)	UBALD1 (ENSOKIG00005010620)	ENSOKIG00005010626
Chinook salmon	MODERN SPECIES		ENSOTSG00005027318	ENSOTSG00005027316	ENSOTSG00005027314	ENSOTSG00005027302	SLC38A10 (ENSOTSG00005027299)	ENSOTSG00005027297	ENSOTSG00005027296	ENSOTSG00005027294	foxl3 (ENSOTSG00005027291)	tom1l2 (ENSOTSG00005027288)	atpaf2 (ENSOTSG00005027287)	GID4 (ENSOTSG00005027286)	noxo1b (ENSOTSG00005027285) #14	ENSOTSG00005027284 #16	ENSOTSG00005027283	MEIOB (ENSOTSG00005027282) #22	pgrmc1 (ENSOTSG00005027281)	ENSOTSG00005027280	zdhhc4 (ENSOTSG00005027279)	grid2ipb (ENSOTSG00005027268)	arhgap17a (ENSOTSG00005027248)	lcmt1 (ENSOTSG00005027246)	ENSOTSG00005027245	ENSOTSG00005027244	ENSOTSG00005027243	ENSOTSG00005027242	ENSOTSG00005027241	foxj1b (ENSOTSG00005027238)	UBALD1 (ENSOTSG00005027237)	ENSOTSG00005027236	ENSOTSG00005027235
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000048027	ENSOMYG00000021890	baiap2l1a (ENSOMYG00000021863)	tmem130 (ENSOMYG00000021837)	ENSOMYG00000071117	ENSOMYG00000021793	ENSOMYG00000059008	ENSOMYG00000021785	ENSOMYG00000021779	tom1l2 (ENSOMYG00000021768)	atpaf2 (ENSOMYG00000021739)	GID4 (ENSOMYG00000021726)	noxo1b (ENSOMYG00000021685) #14	ENSOMYG00000072777 #16	ENSOMYG00000021619	ENSOMYG00000021591 #22	ENSOMYG00000021568	ENSOMYG00000021550	ENSOMYG00000021543	ENSOMYG00000056707	ENSOMYG00000021531	ENSOMYG00000021512	ENSOMYG00000049967	ENSOMYG00000070015	ENSOMYG00000021459	hbae4 (ENSOMYG00000021449)	ENSOMYG00000055147	ENSOMYG00000070166	ENSOMYG00000073651	ENSOMYG00000043102	ENSOMYG00000046025
Huchen	MODERN SPECIES	2446														ENSHHUG00000048056	ENSHHUG00000048058	MEIOB (ENSHHUG00000048061) #22	pgrmc1 (ENSHHUG00000048065)	mlst8 (ENSHHUG00000048068)	bricd5 (ENSHHUG00000048124)	pgp (ENSHHUG00000048125)	zdhhc4 (ENSHHUG00000048126)	grid2ipb (ENSHHUG00000048166)
Northern pike	MODERN SPECIES	4	TECPR1 (ENSELUG00000018176)	baiap2l1a (ENSELUG00000018225)	tmem130 (ENSELUG00000018248)	trrap (ENSELUG00000018399)	FAM20C (ENSELUG00000018434)	foxl3 (ENSELUG00000030836)	tom1l2 (ENSELUG00000018476)	atpaf2 (ENSELUG00000001192)	GID4 (ENSELUG00000018541)	noxo1b (ENSELUG00000018551) #14	RNF151 (ENSELUG00000018574) #16	ENSELUG00000018620	neurl2 (ENSELUG00000018631)	msrb1b (ENSELUG00000018663) #20	ENSELUG00000018675	MEIOB (ENSELUG00000018701) #22	mlst8 (ENSELUG00000000801)	bricd5 (ENSELUG00000025950)	pgp (ENSELUG00000018770)	zdhhc4 (ENSELUG00000018782)	grid2ipb (ENSELUG00000018823)	arhgap17a (ENSELUG00000018904)	aqp8a.1 (ENSELUG00000018983)	hbae4 (ENSELUG00000019002)	ENSELUG00000019035	foxj1b (ENSELUG00000019053)	UBALD1 (ENSELUG00000032018)	ENSELUG00000019069	MRTFB (ENSELUG00000019087)	ercc4 (ENSELUG00000019115)	cpped1 (ENSELUG00000019151)
Acanthomorphata	ANCESTRAL SPECIES	23	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00940000169563	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a
Pomacentridae	ANCESTRAL SPECIES	87			ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Pomacentridae_A	ANCESTRAL SPECIES	84			ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Amphiprion	ANCESTRAL SPECIES	98		ENSGT00390000004394.h.a.b	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Clown anemonefish	MODERN SPECIES	3347						FAM20C (ENSAOCG00000001342)	foxl3 (ENSAOCG00000018658)	tom1l2 (ENSAOCG00000018747)	atpaf2 (ENSAOCG00000018784)	GID4 (ENSAOCG00000018811)	noxo1b (ENSAOCG00000018883) #14	ENSAOCG00000018910	neurl2 (ENSAOCG00000002156)	msrb1b (ENSAOCG00000018941) #20	ENSAOCG00000018956	ENSAOCG00000018968 #22	mlst8 (ENSAOCG00000018989)	bricd5 (ENSAOCG00000019003)	pgp (ENSAOCG00000019012)	zdhhc4 (ENSAOCG00000019029)	grid2ipb (ENSAOCG00000019165)
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000001594	ercc4 (ENSAPEG00000001664)	tmem130 (ENSAPEG00000001696)	nptx2b (ENSAPEG00000001704)	trrap (ENSAPEG00000001755)	FAM20C (ENSAPEG00000002057)	foxl3 (ENSAPEG00000002092)	tom1l2 (ENSAPEG00000002115)	atpaf2 (ENSAPEG00000002201)	GID4 (ENSAPEG00000002217)	noxo1b (ENSAPEG00000002260) #14	ENSAPEG00000002267	neurl2 (ENSAPEG00000002281)	msrb1b (ENSAPEG00000002294) #20	ENSAPEG00000002308	ENSAPEG00000002332 #22	mlst8 (ENSAPEG00000002462)	bricd5 (ENSAPEG00000002474)	pgp (ENSAPEG00000002519)	zdhhc4 (ENSAPEG00000002530)	grid2ipb (ENSAPEG00000002545)	arhgap17a (ENSAPEG00000002629)	lcmt1 (ENSAPEG00000002717)	aqp8a.1 (ENSAPEG00000002773)	ENSAPEG00000002779	hbae5 (ENSAPEG00000002815)	ENSAPEG00000002835	hbbe3 (ENSAPEG00000002857)	hbae4 (ENSAPEG00000002862)	ENSAPEG00000002884	foxj1b (ENSAPEG00000002988)
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4140																ENSAPOG00000018615 #22
Spiny chromis	MODERN SPECIES	4155																ENSAPOG00000018189 #22
Spiny chromis	MODERN SPECIES	3417																ENSAPOG00000015088 #22
Bicolor damselfish	MODERN SPECIES	2331															ENSSPAG00000012122	ENSSPAG00000012004 #22	mlst8 (ENSSPAG00000011977)	bricd5 (ENSSPAG00000011956)	pgp (ENSSPAG00000011948)
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Lyretail cichlid	MODERN SPECIES	366	nptx2b (ENSNBRG00000019969)	ENSNBRG00000019950	trrap (ENSNBRG00000019833)	FAM20C (ENSNBRG00000019780)	foxl3 (ENSNBRG00000019756)	tom1l2 (ENSNBRG00000019739)	atpaf2 (ENSNBRG00000019727)	GID4 (ENSNBRG00000019701)	noxo1b (ENSNBRG00000019679) #14	ENSNBRG00000019665	ENSNBRG00000019649	ENSNBRG00000019634	neurl2 (ENSNBRG00000019616)	msrb1b (ENSNBRG00000019586) #20	ENSNBRG00000019568	MEIOB (ENSNBRG00000019512) #22	mlst8 (ENSNBRG00000019476)	bricd5 (ENSNBRG00000019452)	pgp (ENSNBRG00000019446)	zdhhc4 (ENSNBRG00000019414)	grid2ipb (ENSNBRG00000019207)	arhgap17a (ENSNBRG00000019089)	lcmt1 (ENSNBRG00000019069)	aqp8a.1 (ENSNBRG00000019049)	ENSNBRG00000019034	hbae5 (ENSNBRG00000018453)	hbbe3 (ENSNBRG00000017797)	hbae4 (ENSNBRG00000017717)	ENSNBRG00000017678	foxj1b (ENSNBRG00000017654)	ubald1b (ENSNBRG00000017644)
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b.e	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Burton s mouthbrooder	MODERN SPECIES	419	baiap2l1a (ENSHBUG00000021270)	tmem130 (ENSHBUG00000021255)	nptx2b (ENSHBUG00000000654)	trrap (ENSHBUG00000021191)	FAM20C (ENSHBUG00000020764)	foxl3 (ENSHBUG00000020729)	tom1l2 (ENSHBUG00000020718)	ENSHBUG00000020696	atpaf2 (ENSHBUG00000020685)	GID4 (ENSHBUG00000020660)	noxo1b (ENSHBUG00000020629) #14	ENSHBUG00000020613	neurl2 (ENSHBUG00000020562)	msrb1b (ENSHBUG00000020545) #20	ENSHBUG00000020533	MEIOB (ENSHBUG00000020520) #22	mlst8 (ENSHBUG00000020502)	bricd5 (ENSHBUG00000020511)	pgp (ENSHBUG00000020472)
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b.e	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
P. nyererei	MODERN SPECIES	300	tmem130 (ENSPNYG00000020146)	nptx2b (ENSPNYG00000020166)	ENSPNYG00000020206	trrap (ENSPNYG00000020241)	FAM20C (ENSPNYG00000020386)	foxl3 (ENSPNYG00000020423)	tom1l2 (ENSPNYG00000020437)	atpaf2 (ENSPNYG00000020483)	GID4 (ENSPNYG00000020490)	noxo1b (ENSPNYG00000020514) #14	ENSPNYG00000020570	ENSPNYG00000020648	neurl2 (ENSPNYG00000020672)	msrb1b (ENSPNYG00000020707) #20	ENSPNYG00000020719	MEIOB (ENSPNYG00000020742) #22	ENSPNYG00000020789	mlst8 (ENSPNYG00000020816)	bricd5 (ENSPNYG00000020843)	pgp (ENSPNYG00000020863)	zdhhc4 (ENSPNYG00000020867)	grid2ipb (ENSPNYG00000020897)	arhgap17a (ENSPNYG00000021046)	lcmt1 (ENSPNYG00000021096)	aqp8a.1 (ENSPNYG00000021135)	ENSPNYG00000021166	ENSPNYG00000021270	hbae5 (ENSPNYG00000000664)	hbbe3 (ENSPNYG00000001507)	hbae4 (ENSPNYG00000002413)	ENSPNYG00000002490
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b.e	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Eastern happy	MODERN SPECIES	20	baiap2l1a (ENSACLG00000015328)	tmem130 (ENSACLG00000015380)	nptx2b (ENSACLG00000015439)	ENSACLG00000015473	trrap (ENSACLG00000015555)	FAM20C (ENSACLG00000015693)	foxl3 (ENSACLG00000015751)	tom1l2 (ENSACLG00000015776)	atpaf2 (ENSACLG00000015835)	GID4 (ENSACLG00000015877)	noxo1b (ENSACLG00000015891) #14	ENSACLG00000015942	neurl2 (ENSACLG00000016065)	msrb1b (ENSACLG00000016096) #20	ENSACLG00000016122	MEIOB (ENSACLG00000016141) #22	ENSACLG00000016210	mlst8 (ENSACLG00000016240)	bricd5 (ENSACLG00000016293)	pgp (ENSACLG00000016307)	zdhhc4 (ENSACLG00000016320)	grid2ipb (ENSACLG00000016457)	arhgap17a (ENSACLG00000016601)	lcmt1 (ENSACLG00000016783)	aqp8a.1 (ENSACLG00000016855)	ENSACLG00000016867	hbae5 (ENSACLG00000016905)	ENSACLG00000016916	hbbe3 (ENSACLG00000016926)	hbae4 (ENSACLG00000016935)	ENSACLG00000016945
Zebra mbuna	MODERN SPECIES	1111	TECPR1 (ENSMZEG00005008470)	baiap2l1a (ENSMZEG00005008444)	tmem130 (ENSMZEG00005008428)	nptx2b (ENSMZEG00005008418)	trrap (ENSMZEG00005008221)	FAM20C (ENSMZEG00005008144)	foxl3 (ENSMZEG00005008136)	tom1l2 (ENSMZEG00005008115)	atpaf2 (ENSMZEG00005008102)	GID4 (ENSMZEG00005008087)	noxo1b (ENSMZEG00005008076) #14	ENSMZEG00005008063	neurl2 (ENSMZEG00005008051)	msrb1b (ENSMZEG00005008038) #20	ENSMZEG00005008033	MEIOB (ENSMZEG00005007857) #22	ENSMZEG00005007832	mlst8 (ENSMZEG00005007814)	bricd5 (ENSMZEG00005007809)	pgp (ENSMZEG00005007806)	zdhhc4 (ENSMZEG00005007797)	grid2ipb (ENSMZEG00005007679)	arhgap17a (ENSMZEG00005007569)	lcmt1 (ENSMZEG00005007543)	aqp8a.1 (ENSMZEG00005007537)	ENSMZEG00005007524	hbae5 (ENSMZEG00005007518)	hbbe3 (ENSMZEG00005007502)	hbae4 (ENSMZEG00005007486)	ENSMZEG00005007407	foxj1b (ENSMZEG00005007371)
Nile tilapia	MODERN SPECIES	20	baiap2l1a (ENSONIG00000019822)	tmem130 (ENSONIG00000033434)	nptx2b (ENSONIG00000019818)	trrap (ENSONIG00000019810)	FAM20C (ENSONIG00000027421)	foxl3 (ENSONIG00000035394)	tom1l2 (ENSONIG00000019805)	atpaf2 (ENSONIG00000019804)	GID4 (ENSONIG00000019803)	noxo1b (ENSONIG00000019802) #14	ENSONIG00000028101	ENSONIG00000019800	neurl2 (ENSONIG00000043135)	msrb1b (ENSONIG00000019798) #20	ENSONIG00000037628	MEIOB (ENSONIG00000019795) #22	ENSONIG00000019794	mlst8 (ENSONIG00000019791)	bricd5 (ENSONIG00000035833)	pgp (ENSONIG00000019789)	zdhhc4 (ENSONIG00000019788)	grid2ipb (ENSONIG00000019786)	arhgap17a (ENSONIG00000019784)	lcmt1 (ENSONIG00000019782)	aqp8a.1 (ENSONIG00000019780)	ENSONIG00000019779	hbae5 (ENSONIG00000019777)	ENSONIG00000036578	hbbe3 (ENSONIG00000034901)	hbae4 (ENSONIG00000039402)	ENSONIG00000019770
Midas cichlid	MODERN SPECIES	194	baiap2l1a (ENSACIG00000003033)	tmem130 (ENSACIG00000003313)	nptx2b (ENSACIG00000003351)	ENSACIG00000003373	trrap (ENSACIG00000003402)	FAM20C (ENSACIG00000003548)	foxl3 (ENSACIG00000003570)	tom1l2 (ENSACIG00000003576)	atpaf2 (ENSACIG00000003606)	GID4 (ENSACIG00000003629)	noxo1b (ENSACIG00000003643) #14	ENSACIG00000003666	neurl2 (ENSACIG00000003721)	msrb1b (ENSACIG00000003729) #20	ENSACIG00000003745	MEIOB (ENSACIG00000003755) #22	mlst8 (ENSACIG00000003877)	bricd5 (ENSACIG00000004089)	pgp (ENSACIG00000004116)	zdhhc4 (ENSACIG00000004139)	ENSACIG00000004163	grid2ipb (ENSACIG00000004177)	arhgap17a (ENSACIG00000004237)	lcmt1 (ENSACIG00000004341)	aqp8a.1 (ENSACIG00000004369)	ENSACIG00000004405	ENSACIG00000004571	hbae5 (ENSACIG00000004590)	hbbe3 (ENSACIG00000005236)	hbae4 (ENSACIG00000006089)	ENSACIG00000006145
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Oryzias	ANCESTRAL SPECIES	11	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT01000000214725.F	ENSGT00940000164514.a	ENSGT00390000008825.a
Oryzias_a	ANCESTRAL SPECIES	32	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT01000000214725.F	ENSGT00940000164514.a	ENSGT00390000008825.a
Japanese Medaka HdrR	MODERN SPECIES	10	TECPR1 (ENSORLG00000003392)	baiap2l1a (ENSORLG00000003355)	tmem130 (ENSORLG00000003309)	nptx2b (ENSORLG00000003306)	trrap (ENSORLG00000003282)	FAM20C (ENSORLG00000003261)	foxl3 (ENSORLG00000003248)	tom1l2 (ENSORLG00000003244)	atpaf2 (ENSORLG00000003200)	GID4 (ENSORLG00000003188)	noxo1b (ENSORLG00000003181) #14	ENSORLG00000003163	neurl2 (ENSORLG00000003138)	msrb1b (ENSORLG00000003128) #20	ENSORLG00000026027	ENSORLG00000003120 #22	mlst8 (ENSORLG00000003112)	bricd5 (ENSORLG00000028325)	pgp (ENSORLG00000003089)	zdhhc4 (ENSORLG00000003085)	grid2ipb (ENSORLG00000030008)	arhgap17a (ENSORLG00000028308)	lcmt1 (ENSORLG00000003071)	ENSORLG00000003054	ENSORLG00000003046	ENSORLG00000003020	hbbe2 (ENSORLG00000026120)	hbae4 (ENSORLG00000002990)	ENSORLG00000020174	ENSORLG00000002983	foxj1b (ENSORLG00000025879)
Chinese medaka	MODERN SPECIES	537	baiap2l1a (ENSOSIG00000019749)	nptx2b (ENSOSIG00000019752)	trrap (ENSOSIG00000003751)	ENSOSIG00000003809	FAM20C (ENSOSIG00000003895)	foxl3 (ENSOSIG00000005987)	tom1l2 (ENSOSIG00000005989)	atpaf2 (ENSOSIG00000006017)	ENSOSIG00000006035	GID4 (ENSOSIG00000006037)	noxo1b (ENSOSIG00000006040) #14	ENSOSIG00000006052	neurl2 (ENSOSIG00000006218)	msrb1b (ENSOSIG00000006219) #20	ENSOSIG00000006221	ENSOSIG00000006222 #22	bricd5 (ENSOSIG00000006224)	pgp (ENSOSIG00000006225)	zdhhc4 (ENSOSIG00000006226)	grid2ipb (ENSOSIG00000006227)	arhgap17a (ENSOSIG00000006251)	lcmt1 (ENSOSIG00000008647)	ENSOSIG00000008666	hbae5 (ENSOSIG00000008669)	hbae4 (ENSOSIG00000008671)	ENSOSIG00000008688
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT01000000214725.E.b	ENSGT01000000214725.E.a	ENSGT01000000214725.F
Indian medaka	MODERN SPECIES	17	baiap2l1a (ENSOMEG00000006730)	tmem130 (ENSOMEG00000006782)	nptx2b (ENSOMEG00000006798)	ENSOMEG00000006827	ENSOMEG00000006842	FAM20C (ENSOMEG00000006886)	foxl3 (ENSOMEG00000006898)	tom1l2 (ENSOMEG00000006987)	atpaf2 (ENSOMEG00000007022)	GID4 (ENSOMEG00000007074)	noxo1b (ENSOMEG00000007099) #14	ENSOMEG00000007160	neurl2 (ENSOMEG00000007173)	msrb1b (ENSOMEG00000007188) #20	ENSOMEG00000007198	ENSOMEG00000007227 #22	mlst8 (ENSOMEG00000007252)	bricd5 (ENSOMEG00000007262)	pgp (ENSOMEG00000007274)	zdhhc4 (ENSOMEG00000007290)	grid2ipb (ENSOMEG00000007318)	arhgap17a (ENSOMEG00000007398)	lcmt1 (ENSOMEG00000007468)	ENSOMEG00000007481	hbae5 (ENSOMEG00000007493)	ENSOMEG00000007503	hbbe3 (ENSOMEG00000007514)	hbae4 (ENSOMEG00000007528)	ENSOMEG00000007563	ENSOMEG00000007614	ENSOMEG00000007626
Javanese ricefish	MODERN SPECIES	10	bhlha15 (ENSOJAG00000003013)	baiap2l1a (ENSOJAG00000002941)	ENSOJAG00000002930	nptx2b (ENSOJAG00000002885)	trrap (ENSOJAG00000002680)	FAM20C (ENSOJAG00000002606)	foxl3 (ENSOJAG00000002558)	tom1l2 (ENSOJAG00000002525)	atpaf2 (ENSOJAG00000002490)	GID4 (ENSOJAG00000002480)	noxo1b (ENSOJAG00000002457) #14	ENSOJAG00000002440	neurl2 (ENSOJAG00000002429)	msrb1b (ENSOJAG00000002421) #20	ENSOJAG00000002413	ENSOJAG00000002398 #22	mlst8 (ENSOJAG00000002374)	bricd5 (ENSOJAG00000002361)	pgp (ENSOJAG00000002356)	zdhhc4 (ENSOJAG00000002346)	grid2ipb (ENSOJAG00000002309)	arhgap17a (ENSOJAG00000002115)	lcmt1 (ENSOJAG00000009709)	ENSOJAG00000009660	hbae5 (ENSOJAG00000009644)	hbbe3 (ENSOJAG00000009528)	hbae4 (ENSOJAG00000009500)	ENSOJAG00000009322	ENSOJAG00000009299	ENSOJAG00000009262	ENSOJAG00000009245
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015014525	trrap (ENSNFUG00015014119)	ENSNFUG00015014009	star (ENSNFUG00015014000)	FAM20C (ENSNFUG00015013979)	foxl3 (ENSNFUG00015013963)	TOM1L2 (ENSNFUG00015013922)	ATPAF2 (ENSNFUG00015013898)	GID4 (ENSNFUG00015013885)	noxo1b (ENSNFUG00015013882) #14	ENSNFUG00015013873	neurl2 (ENSNFUG00015013863)	msrb1b (ENSNFUG00015013855) #20	HS3ST6 (ENSNFUG00015013850)	ENSNFUG00015013846	MEIOB (ENSNFUG00015013831) #22	MLST8 (ENSNFUG00015013814)	bricd5 (ENSNFUG00015013804)	PGP (ENSNFUG00015013798)	ZDHHC4 (ENSNFUG00015013790)	grid2ipb (ENSNFUG00015013747)	arhgap17a (ENSNFUG00015013542)	lcmt1 (ENSNFUG00015013483)	ENSNFUG00015013475	hbae5 (ENSNFUG00015013469)	ENSNFUG00015013463	hbbe3 (ENSNFUG00015013458)	ENSNFUG00015013449	ENSNFUG00015013445	NUF2 (ENSNFUG00015013438)	ENSNFUG00015013409
Mangrove rivulus	MODERN SPECIES	43											ubald1b (ENSKMAG00000006734)	foxj1b (ENSKMAG00000006749)	ENSKMAG00000006783	msrb1b (ENSKMAG00000006858) #20	ENSKMAG00000006871	ENSKMAG00000006905 #22	mlst8 (ENSKMAG00000007045)	bricd5 (ENSKMAG00000007081)	pgp (ENSKMAG00000007095)	zdhhc4 (ENSKMAG00000007116)	grid2ipb (ENSKMAG00000007141)	arhgap17a (ENSKMAG00000007197)	lcmt1 (ENSKMAG00000007248)	ENSKMAG00000007283	hbae5 (ENSKMAG00000007296)	hbbe3 (ENSKMAG00000007361)	ENSKMAG00000007795	hbae4 (ENSKMAG00000007808)	neurl2 (ENSKMAG00000007821)	ENSKMAG00000007831	noxo1b (ENSKMAG00000007848) #14
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
NAME_4	ANCESTRAL SPECIES	15	ENSGT00950000182859.B	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000156278.xb.a	ENSGT00940000156278.xb.b
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	26																ENSCVAG00000022387 #22	ENSCVAG00000022379
Sheepshead minnow	MODERN SPECIES	21																ENSCVAG00000022507 #22	ENSCVAG00000022476
Mummichog	MODERN SPECIES	290	ENSFHEG00000016513	baiap2l1a (ENSFHEG00000016505)	tmem130 (ENSFHEG00000016497)	nptx2b (ENSFHEG00000016483)	trrap (ENSFHEG00000016413)	FAM20C (ENSFHEG00000015955)	foxl3 (ENSFHEG00000015932)	tom1l2 (ENSFHEG00000015915)	atpaf2 (ENSFHEG00000015894)	GID4 (ENSFHEG00000015885)	noxo1b (ENSFHEG00000015879) #14	ENSFHEG00000015873	neurl2 (ENSFHEG00000015838)	msrb1b (ENSFHEG00000015832) #20	ENSFHEG00000015821	ENSFHEG00000000390 #22	mlst8 (ENSFHEG00000015660)	pgp (ENSFHEG00000015624)	zdhhc4 (ENSFHEG00000015598)
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00730000110975	ENSGT00940000163663.B.b	ENSGT00940000165873	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00940000178019	ENSGT00390000008825.a	ENSGT00940000164514.a	ENSGT00940000154590	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000165638.a.b	ENSGT00940000156372	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00510000047678.a.a.b #20	ENSGT00940000159689	ENSGT00940000164352.a	ENSGT00940000158812.j.a #14	ENSGT00500000044930.e.a	ENSGT00390000009492	ENSGT00940000156940.b	ENSGT00940000162800	ENSGT00950000182951.A.a.a.c.b
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000162720.a.b.a	ENSGT00730000110975	ENSGT00940000163663.B.b.a	ENSGT00940000165873	ENSGT00390000004394	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00940000178019	ENSGT00390000008825.a	ENSGT00940000164514.a	ENSGT00940000154590	ENSGT00940000157809.j.a.e.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000165638.a.b	ENSGT00940000156372	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000159689	ENSGT00940000164352.a	ENSGT00940000158812.j.a #14	ENSGT00500000044930.e.a	ENSGT00390000009492	ENSGT00940000156940.b	ENSGT00940000162800	ENSGT00950000182951.A.a.a.c.b.d	ENSGT00390000017961.cb
NAME_6	ANCESTRAL SPECIES	451																ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b
Sailfin molly	MODERN SPECIES	3472																ENSPLAG00000012923 #22	mlst8 (ENSPLAG00000012968)
Amazon molly	MODERN SPECIES	1148																ENSPFOG00000014271 #22	mlst8 (ENSPFOG00000014244)	bricd5 (ENSPFOG00000014229)	pgp (ENSPFOG00000014219)	zdhhc4 (ENSPFOG00000014197)	ENSPFOG00000014120
Guppy	MODERN SPECIES	449	ENSPREG00000016592	ENSPREG00000016582	shisa9a (ENSPREG00000016559)	ercc4 (ENSPREG00000016530)	MRTFB (ENSPREG00000016477)	ENSPREG00000016457	ubald1b (ENSPREG00000016448)	foxj1b (ENSPREG00000016437)	ENSPREG00000016408	hbae4 (ENSPREG00000016396)	hbbe3 (ENSPREG00000016388)	hbae5 (ENSPREG00000015837)	ENSPREG00000015771	lcmt1 (ENSPREG00000015745)	ENSPREG00000015733	ENSPREG00000015701 #22	pgp (ENSPREG00000015686)	zdhhc4 (ENSPREG00000015676)	grid2ipb (ENSPREG00000015659)	ENSPREG00000015650	neurl2 (ENSPREG00000015640)	ENSPREG00000015592	noxo1b (ENSPREG00000015576) #14	GID4 (ENSPREG00000015566)	atpaf2 (ENSPREG00000015550)	ENSPREG00000015538	foxl3 (ENSPREG00000015529)	FAM20C (ENSPREG00000015492)	ENSPREG00000015471	ENSPREG00000015451	ENSPREG00000015438
Platyfish	MODERN SPECIES	1	shisa9a (ENSXMAG00000012636)	cpped1 (ENSXMAG00000012639)	ercc4 (ENSXMAG00000007920)	MRTFB (ENSXMAG00000010665)	ENSXMAG00000021599	ubald1b (ENSXMAG00000011792)	foxj1b (ENSXMAG00000021262)	ENSXMAG00000026583	hbae4 (ENSXMAG00000017354)	ENSXMAG00000022060	hbbe3 (ENSXMAG00000029665)	hbae5 (ENSXMAG00000025900)	ENSXMAG00000026595	lcmt1 (ENSXMAG00000017430)	ENSXMAG00000029541	ENSXMAG00000011777 #22	mlst8 (ENSXMAG00000025970)	bricd5 (ENSXMAG00000024582)	pgp (ENSXMAG00000029375)	zdhhc4 (ENSXMAG00000027839)	grid2ipb (ENSXMAG00000011712)	arhgap17a (ENSXMAG00000000134)	msrb1b (ENSXMAG00000027955) #20	neurl2 (ENSXMAG00000000146)	ENSXMAG00000000148	noxo1b (ENSXMAG00000029525) #14	GID4 (ENSXMAG00000000156)	atpaf2 (ENSXMAG00000000163)	ENSXMAG00000022873	ENSXMAG00000023560	FAM20C (ENSXMAG00000015864)
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Carangaria	ANCESTRAL SPECIES	13	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Seriola	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00530000063702.b	ENSGT00940000159920.b	ENSGT00940000155698.B	ENSGT00390000016895	ENSGT00730000111029.a	ENSGT00940000166161	ENSGT00940000154322.B	ENSGT00940000158269.f.a
Greater amberjack	MODERN SPECIES	27	TECPR1 (ENSSDUG00000005290)	baiap2l1a (ENSSDUG00000005346)	tmem130 (ENSSDUG00000005365)	nptx2b (ENSSDUG00000005381)	trrap (ENSSDUG00000005417)	FAM20C (ENSSDUG00000005600)	foxl3 (ENSSDUG00000005636)	tom1l2 (ENSSDUG00000005662)	atpaf2 (ENSSDUG00000005731)	GID4 (ENSSDUG00000005746)	noxo1b (ENSSDUG00000005765) #14	ENSSDUG00000005776	neurl2 (ENSSDUG00000005789)	msrb1b (ENSSDUG00000005804) #20	ENSSDUG00000005812	MEIOB (ENSSDUG00000005823) #22	MLST8 (ENSSDUG00000005876)	mlst8 (ENSSDUG00000005898)	bricd5 (ENSSDUG00000005922)	pgp (ENSSDUG00000005933)	zdhhc4 (ENSSDUG00000005941)	grid2ipb (ENSSDUG00000005989)	arhgap17a (ENSSDUG00000006161)	ENSSDUG00000006309	LMF1 (ENSSDUG00000006325)	sox8a (ENSSDUG00000006370)	ENSSDUG00000006389	cox19 (ENSSDUG00000006411)	ENSSDUG00000006433	ENSSDUG00000006462	ENSSDUG00000006488
Yellowtail amberjack	MODERN SPECIES	3181	TECPR1 (ENSSLDG00000004237)	baiap2l1a (ENSSLDG00000004340)	tmem130 (ENSSLDG00000004354)	nptx2b (ENSSLDG00000004376)	trrap (ENSSLDG00000004449)	FAM20C (ENSSLDG00000004757)	foxl3 (ENSSLDG00000004803)	tom1l2 (ENSSLDG00000004820)	atpaf2 (ENSSLDG00000004840)	GID4 (ENSSLDG00000004857)	noxo1b (ENSSLDG00000004881) #14	ENSSLDG00000004900	neurl2 (ENSSLDG00000004925)	msrb1b (ENSSLDG00000004938) #20	ENSSLDG00000004959	MEIOB (ENSSLDG00000004986) #22	mlst8 (ENSSLDG00000005116)	bricd5 (ENSSLDG00000005165)	pgp (ENSSLDG00000005212)	zdhhc4 (ENSSLDG00000005222)	grid2ipb (ENSSLDG00000005268)
Barramundi perch	MODERN SPECIES	431							foxl3 (ENSLCAG00010028086)	tom1l2 (ENSLCAG00010028087)	atpaf2 (ENSLCAG00010028088)	GID4 (ENSLCAG00010028089)	noxo1b (ENSLCAG00010028090) #14	ENSLCAG00010028091	neurl2 (ENSLCAG00010028092)	msrb1b (ENSLCAG00010028093) #20	ENSLCAG00010028094	MEIOB (ENSLCAG00010028095) #22	mlst8 (ENSLCAG00010028096)	bricd5 (ENSLCAG00010028097)	pgp (ENSLCAG00010028098)	zdhhc4 (ENSLCAG00010028099)	grid2ipb (ENSLCAG00010028100)	arhgap17a (ENSLCAG00010028101)	lcmt1 (ENSLCAG00010028102)	aqp8a.1 (ENSLCAG00010028103)	ENSLCAG00010028104	hbae5 (ENSLCAG00010028105)	ENSLCAG00010028106	hbbe3 (ENSLCAG00010028107)	hbae4 (ENSLCAG00010028108)	ENSLCAG00010028115	foxj1b (ENSLCAG00010028118)
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000178476	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Tongue sole	MODERN SPECIES	18	ENSCSEG00000000756	ENSCSEG00000000789	ENSCSEG00000000823	ENSCSEG00000000829	trrap (ENSCSEG00000000834)	FAM20C (ENSCSEG00000000865)	msrb1b (ENSCSEG00000000880) #20	neurl2 (ENSCSEG00000000886)	ENSCSEG00000000890	noxo1b (ENSCSEG00000000896) #14	GID4 (ENSCSEG00000000898)	atpaf2 (ENSCSEG00000000905)	ENSCSEG00000000911	foxl3 (ENSCSEG00000000919)	ENSCSEG00000000921	MEIOB (ENSCSEG00000000926) #22	mlst8 (ENSCSEG00000000934)	bricd5 (ENSCSEG00000000940)	pgp (ENSCSEG00000000945)	zdhhc4 (ENSCSEG00000000947)	grid2ipb (ENSCSEG00000000952)	ENSCSEG00000000964	ENSCSEG00000000976	lcmt1 (ENSCSEG00000000983)	aqp8a.1 (ENSCSEG00000000989)	ENSCSEG00000000995	hbae5 (ENSCSEG00000001002)	ENSCSEG00000001010	HBE1 (ENSCSEG00000001017)	ENSCSEG00000001190	ENSCSEG00000001193
Turbot	MODERN SPECIES	9	baiap2l1a (ENSSMAG00000009639)	tmem130 (ENSSMAG00000009625)	nptx2b (ENSSMAG00000009613)	ENSSMAG00000009184	ENSSMAG00000009135	foxl3 (ENSSMAG00000009122)	ENSSMAG00000034961	tom1l2 (ENSSMAG00000009102)	atpaf2 (ENSSMAG00000009068)	GID4 (ENSSMAG00000009052)	noxo1b (ENSSMAG00000009040) #14	ENSSMAG00000009015	neurl2 (ENSSMAG00000008992)	msrb1b (ENSSMAG00000008970) #20	ENSSMAG00000008954	ENSSMAG00000008821 #22	mlst8 (ENSSMAG00000008770)	bricd5 (ENSSMAG00000008752)	pgp (ENSSMAG00000008748)	zdhhc4 (ENSSMAG00000008696)	ENSSMAG00000008695	grid2ipb (ENSSMAG00000008656)	arhgap17a (ENSSMAG00000008554)	lcmt1 (ENSSMAG00000008498)	aqp8a.1 (ENSSMAG00000008477)	ENSSMAG00000008469	ENSSMAG00000008459	hbae4 (ENSSMAG00000021725)	hbae5 (ENSSMAG00000008444)	ENSSMAG00000008257	foxj1b (ENSSMAG00000008197)
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a
Zig-zag eel	MODERN SPECIES	10	bhlha15 (ENSMAMG00000006657)	ENSMAMG00000006599	baiap2l1a (ENSMAMG00000006582)	ENSMAMG00000006561	nptx2b (ENSMAMG00000006501)	trrap (ENSMAMG00000006314)	ENSMAMG00000006279	tom1l2 (ENSMAMG00000006252)	atpaf2 (ENSMAMG00000006243)	GID4 (ENSMAMG00000006219)	noxo1b (ENSMAMG00000006204) #14	ENSMAMG00000006182	neurl2 (ENSMAMG00000006166)	msrb1b (ENSMAMG00000025564) #20	ENSMAMG00000006153	ENSMAMG00000006016 #22	mlst8 (ENSMAMG00000005999)	bricd5 (ENSMAMG00000005980)	pgp (ENSMAMG00000005976)	zdhhc4 (ENSMAMG00000005970)	ENSMAMG00000024761	grid2ipb (ENSMAMG00000005902)	arhgap17a (ENSMAMG00000005495)	lcmt1 (ENSMAMG00000026824)	aqp8a.1 (ENSMAMG00000005456)	ENSMAMG00000004830	hbae5 (ENSMAMG00000004812)	hbbe3 (ENSMAMG00000004796)	hbae4 (ENSMAMG00000004789)	ENSMAMG00000004697	foxj1b (ENSMAMG00000025608)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000161824	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a
Siamese fighting fish	MODERN SPECIES	9	pvalb3 (ENSBSLG00000022268)	bhlha15 (ENSBSLG00000022326)	TECPR1 (ENSBSLG00000022366)	baiap2l1a (ENSBSLG00000022471)	ENSBSLG00000022510	nptx2b (ENSBSLG00000022517)	trrap (ENSBSLG00000022902)	ENSBSLG00000023346	foxl3 (ENSBSLG00000023526)	tom1l2 (ENSBSLG00000023533)	atpaf2 (ENSBSLG00000023576)	GID4 (ENSBSLG00000023586)	noxo1b (ENSBSLG00000023596) #14	ENSBSLG00000023607	ENSBSLG00000023656	ENSBSLG00000023660 #22	mlst8 (ENSBSLG00000023673)	bricd5 (ENSBSLG00000023689)	pgp (ENSBSLG00000023691)	zdhhc4 (ENSBSLG00000023694)	arhgap17a (ENSBSLG00000015375)	lcmt1 (ENSBSLG00000016200)	aqp8a.1 (ENSBSLG00000016222)	ENSBSLG00000016227	hbae5 (ENSBSLG00000016230)	ENSBSLG00000016238	hbbe3 (ENSBSLG00000016244)	hbae4 (ENSBSLG00000016248)	ENSBSLG00000016795	foxj1b (ENSBSLG00000017710)	ubald1b (ENSBSLG00000017716)
Climbing perch	MODERN SPECIES	10	ENSATEG00000012981	ENSATEG00000012871	baiap2l1a (ENSATEG00000012469)	ENSATEG00000012428	nptx2b (ENSATEG00000012347)	trrap (ENSATEG00000012056)	ENSATEG00000011990	foxl3 (ENSATEG00000029901)	tom1l2 (ENSATEG00000011951)	atpaf2 (ENSATEG00000011939)	GID4 (ENSATEG00000011913)	noxo1b (ENSATEG00000011901) #14	ENSATEG00000011757	neurl2 (ENSATEG00000011739)	ENSATEG00000011732	ENSATEG00000011628 #22	mlst8 (ENSATEG00000011610)	bricd5 (ENSATEG00000011601)	pgp (ENSATEG00000011591)	zdhhc4 (ENSATEG00000011584)	grid2ipb (ENSATEG00000011535)	arhgap17a (ENSATEG00000011455)	lcmt1 (ENSATEG00000011385)	aqp8a.1 (ENSATEG00000011356)	ENSATEG00000011157	hbae5 (ENSATEG00000011075)	ENSATEG00000011059	hbbe3 (ENSATEG00000009603)	hbae4 (ENSATEG00000009576)	ENSATEG00000009442	ENSATEG00000009481
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000154590	ENSGT00940000176976	ENSGT00940000157809.j.a.e.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000164514.a	ENSGT00390000008825.a	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00390000004394	ENSGT00940000165873
Fugu	MODERN SPECIES		bhlha15 (ENSTRUG00000016815)	TECPR1 (ENSTRUG00000016816)	baiap2l1a (ENSTRUG00000016828)	ENSTRUG00000021481	nptx2b (ENSTRUG00000016838)	trrap (ENSTRUG00000016842)	fam20c2 (ENSTRUG00000019489)	foxl3 (ENSTRUG00000025358)	tom1l2 (ENSTRUG00000016860)	atpaf2 (ENSTRUG00000016869)	GID4 (ENSTRUG00000016871)	noxo1b (ENSTRUG00000016872) #14	ENSTRUG00000016877	neurl2 (ENSTRUG00000031963)	ENSTRUG00000016885	MEIOB (ENSTRUG00000016886) #22	mlst8 (ENSTRUG00000016890)	pgp (ENSTRUG00000016899)	zdhhc4 (ENSTRUG00000016903)	grid2ipb (ENSTRUG00000016907)	lcmt1 (ENSTRUG00000016915)	arhgap17a (ENSTRUG00000016912)	hbae4 (ENSTRUG00000026211)	ENSTRUG00000016923	HBB (ENSTRUG00000028550)	hbae5 (ENSTRUG00000030273)	ENSTRUG00000016931	foxj1b (ENSTRUG00000016940)	ubald1b (ENSTRUG00000030166)	ENSTRUG00000026888	MRTFB (ENSTRUG00000016949)
Tetraodon	MODERN SPECIES	13	nptx2b (ENSTNIG00000012891)	nptx2b (ENSTNIG00000012892)	ENSTNIG00000012893	ENSTNIG00000012894	FAM20C (ENSTNIG00000012895)	FAM20C (ENSTNIG00000012896)	foxl3 (ENSTNIG00000012897)	tom1l2 (ENSTNIG00000012898)	atpaf2 (ENSTNIG00000012899)	GID4 (ENSTNIG00000012900)	noxo1b (ENSTNIG00000001622) #14	ENSTNIG00000012901	neurl2 (ENSTNIG00000012902)	msrb1b (ENSTNIG00000012903) #20	ENSTNIG00000012904	MEIOB (ENSTNIG00000012905) #22	mlst8 (ENSTNIG00000012906)	pgp (ENSTNIG00000012907)	zdhhc4 (ENSTNIG00000012908)	grid2ipb (ENSTNIG00000012909)	arhgap17a (ENSTNIG00000012910)	lcmt1 (ENSTNIG00000012911)	hbae4 (ENSTNIG00000012912)	hbbe3 (ENSTNIG00000012913)	hbae5 (ENSTNIG00000012914)	ENSTNIG00000012915	foxj1b (ENSTNIG00000012916)	ubald1b (ENSTNIG00000012917)	MRTFB (ENSTNIG00000012918)	ercc4 (ENSTNIG00000012919)	ENSTNIG00000012920
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Ballan wrasse	MODERN SPECIES	181					FAM20C (ENSLBEG00000024102)	foxl3 (ENSLBEG00000024122)	tom1l2 (ENSLBEG00000024152)	atpaf2 (ENSLBEG00000024199)	GID4 (ENSLBEG00000024219)	noxo1b (ENSLBEG00000024271) #14	ENSLBEG00000024308	neurl2 (ENSLBEG00000024323)	msrb1b (ENSLBEG00000024335) #20	ENSLBEG00000024346	ENSLBEG00000024361	ENSLBEG00000024462 #22	mlst8 (ENSLBEG00000024545)	bricd5 (ENSLBEG00000024564)	pgp (ENSLBEG00000024578)	zdhhc4 (ENSLBEG00000024600)	grid2ipb (ENSLBEG00000024674)	arhgap17a (ENSLBEG00000024821)	lcmt1 (ENSLBEG00000024937)	aqp8a.1 (ENSLBEG00000024979)	hbae5 (ENSLBEG00000024993)	ENSLBEG00000025004	ENSLBEG00000025043	HBE1 (ENSLBEG00000025066)	ENSLBEG00000025083	ENSLBEG00000025095	hbae4 (ENSLBEG00000025111)
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a	ENSGT00950000182979.a.b.b.b.b.i.b
Gilthead seabream	MODERN SPECIES	12	TECPR1 (ENSSAUG00010013939)	baiap2l1a (ENSSAUG00010013912)	tmem130 (ENSSAUG00010013903)	nptx2b (ENSSAUG00010013900)	ENSSAUG00010013898	FAM20C (ENSSAUG00010013838)	foxl3 (ENSSAUG00010013827)	tom1l2 (ENSSAUG00010013794)	atpaf2 (ENSSAUG00010013780)	GID4 (ENSSAUG00010013779)	noxo1b (ENSSAUG00010013776) #14	ENSSAUG00010013774	neurl2 (ENSSAUG00010013772)	msrb1b (ENSSAUG00010013771) #20	ENSSAUG00010013770	MEIOB (ENSSAUG00010013768) #22	mlst8 (ENSSAUG00010013764)	bricd5 (ENSSAUG00010013762)	ENSSAUG00010013761	zdhhc4 (ENSSAUG00010013760)	grid2ipb (ENSSAUG00010013741)	arhgap17a (ENSSAUG00010011620)	lcmt1 (ENSSAUG00010011445)	aqp8a.1 (ENSSAUG00010011442)	ENSSAUG00010011438	hbbe3 (ENSSAUG00010011429)	hbae5 (ENSSAUG00010011425)	hbae4 (ENSSAUG00010011422)	ENSSAUG00010009359	foxj1b (ENSSAUG00010009334)	ubald1b (ENSSAUG00010009333)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a	ENSGT00950000182979.a.b.b.b.b.i.b
Large yellow croaker	MODERN SPECIES	488	TECPR1 (ENSLCRG00005001959)	baiap2l1a (ENSLCRG00005001998)	tmem130 (ENSLCRG00005002204)	nptx2b (ENSLCRG00005002206)	trrap (ENSLCRG00005002229)	FAM20C (ENSLCRG00005002255)	foxl3 (ENSLCRG00005002336)	tom1l2 (ENSLCRG00005002339)	atpaf2 (ENSLCRG00005002369)	GID4 (ENSLCRG00005002379)	noxo1b (ENSLCRG00005002390) #14	ENSLCRG00005002401	neurl2 (ENSLCRG00005002413)	msrb1b (ENSLCRG00005002422) #20	ENSLCRG00005002428	ENSLCRG00005002439 #22	mlst8 (ENSLCRG00005002477)	bricd5 (ENSLCRG00005002500)	pgp (ENSLCRG00005002505)	zdhhc4 (ENSLCRG00005002509)	grid2ipb (ENSLCRG00005002531)	arhgap17a (ENSLCRG00005002600)	lcmt1 (ENSLCRG00005002871)	aqp8a.1 (ENSLCRG00005002919)	ENSLCRG00005002920	hbae5 (ENSLCRG00005002925)	hbbe3 (ENSLCRG00005002975)	hbae4 (ENSLCRG00005002977)	ENSLCRG00005002993	foxj1b (ENSLCRG00005003066)	ubald1b (ENSLCRG00005003069)
European seabass	MODERN SPECIES	11	bhlha15 (ENSDLAG00005033943)	ENSDLAG00005020318	baiap2l1a (ENSDLAG00005020402)	tmem130 (ENSDLAG00005020473)	nptx2b (ENSDLAG00005020490)	ENSDLAG00005020499	trrap (ENSDLAG00005004633)	ENSDLAG00005009626	foxl3 (ENSDLAG00005009768)	TOM1L2 (ENSDLAG00005009785)	ENSDLAG00005034081	noxo1b (ENSDLAG00005010019) #14	ENSDLAG00005010070	neurl2 (ENSDLAG00005010208)	ENSDLAG00005033312	ENSDLAG00005010234 #22	mlst8 (ENSDLAG00005010279)	pgp (ENSDLAG00005031158)	grid2ipb (ENSDLAG00005010428)	zdhhc4 (ENSDLAG00005010404)	arhgap17a (ENSDLAG00005010579)	lcmt1 (ENSDLAG00005011060)	aqp8a.1 (ENSDLAG00005011176)	ENSDLAG00005011229	hbae5 (ENSDLAG00005035008)	hbbe3 (ENSDLAG00005027857)	ENSDLAG00005011296	FOXJ1-A (ENSDLAG00005032925)	FAM100A (ENSDLAG00005028739)	MRTFB (ENSDLAG00005011925)	ercc4 (ENSDLAG00005011989)
Perciformes	ANCESTRAL SPECIES	9	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000154590	ENSGT00940000164514.a	ENSGT00390000008825.a	ENSGT01100000263632.b	ENSGT00950000182979.a.b.b.b.b.i.b	ENSGT00390000004394
Stickleback	MODERN SPECIES	5	pvalb3 (ENSGACG00000009409)	ENSGACG00000009404	bhlha15 (ENSGACG00000009403)	TECPR1 (ENSGACG00000009374)	baiap2l1a (ENSGACG00000009367)	nptx2b (ENSGACG00000009357)	trrap (ENSGACG00000009311)	tom1l2 (ENSGACG00000009286)	atpaf2 (ENSGACG00000009266)	GID4 (ENSGACG00000009253)	noxo1b (ENSGACG00000009244) #14	ENSGACG00000009233 #14	ENSGACG00000009226	neurl2 (ENSGACG00000009224)	msrb1b (ENSGACG00000009221) #20	MEIOB (ENSGACG00000009213) #22	mlst8 (ENSGACG00000009191)	pgp (ENSGACG00000009185)	zdhhc4 (ENSGACG00000009162)	grid2ipb (ENSGACG00000009152)	ENSGACG00000009145	lcmt1 (ENSGACG00000009130)	ENSGACG00000009127	ENSGACG00000009123	ENSGACG00000009121	NLRC3 (ENSGACG00000009105)	GCGR (ENSGACG00000009099)	WDR90 (ENSGACG00000009083)	rhot2 (ENSGACG00000009036)	h1-0 (ENSGACG00000009033)	rhbdl1 (ENSGACG00000009028)
Lumpfish	MODERN SPECIES	10	nptx2b (ENSCLMG00005011578)	polm (ENSCLMG00005011576)	trrap (ENSCLMG00005006184)	FAM20C (ENSCLMG00005005882)	foxl3 (ENSCLMG00005005868)	tom1l2 (ENSCLMG00005005867)	atpaf2 (ENSCLMG00005005866)	GID4 (ENSCLMG00005005865)	noxo1b (ENSCLMG00005005864) #14	ENSCLMG00005005863 #14	ENSCLMG00005005862	ENSCLMG00005005861	neurl2 (ENSCLMG00005005859)	msrb1b (ENSCLMG00005005857) #20	ENSCLMG00005005856	ENSCLMG00005005855 #22	mlst8 (ENSCLMG00005005854)	bricd5 (ENSCLMG00005005852)	pgp (ENSCLMG00005005850)	zdhhc4 (ENSCLMG00005005848)	grid2ipb (ENSCLMG00005005845)	arhgap17a (ENSCLMG00005004001)	lcmt1 (ENSCLMG00005003996)	ENSCLMG00005003994	hbae5 (ENSCLMG00005003993)	hbae4 (ENSCLMG00005003992)	ENSCLMG00005003865	foxj1b (ENSCLMG00005003851)	ubald1b (ENSCLMG00005003850)	ENSCLMG00005003847	MRTFB (ENSCLMG00005003652)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00510000047886.a.a	ENSGT00940000153560.b.b.a.g	ENSGT00940000169563	ENSGT01060000248591.a.a.a.a.a	ENSGT00390000017961	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00500000044930.e.a	ENSGT00940000158812.j.a #14	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00510000047678.a.a.b #20	ENSGT00940000165237.b.b	ENSGT00390000001723 #22	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00920000149163	ENSGT01030000235046.a	ENSGT00940000157625.a.b	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000159304	ENSGT00940000165638.a.b	ENSGT00940000163288.a.b.b.b.a.b	ENSGT00940000157809.j.a.e.b	ENSGT00940000176976	ENSGT00940000154590	ENSGT00940000164514.a
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000010954	trrap (ENSCGOG00000007596)	FAM20C (ENSCGOG00000007375)	foxl3 (ENSCGOG00000007363)	ENSCGOG00000007360	tom1l2 (ENSCGOG00000007350)	atpaf2 (ENSCGOG00000007339)	GID4 (ENSCGOG00000007338)	noxo1b (ENSCGOG00000007331) #14	noxo1b (ENSCGOG00000007323) #14	noxo1b (ENSCGOG00000007318) #14	ENSCGOG00000007306	neurl2 (ENSCGOG00000007303)	msrb1b (ENSCGOG00000007302) #20	ENSCGOG00000007300	ENSCGOG00000007233 #22	mlst8 (ENSCGOG00000007209)	bricd5 (ENSCGOG00000007204)	pgp (ENSCGOG00000007202)	zdhhc4 (ENSCGOG00000007200)	ENSCGOG00000007182	grid2ipb (ENSCGOG00000007173)	ENSCGOG00000007170	ENSCGOG00000007168	lcmt1 (ENSCGOG00000006837)	arhgap17a (ENSCGOG00000006662)	lcmt1 (ENSCGOG00000006653)	lcmt1 (ENSCGOG00000006615)	aqp8a.1 (ENSCGOG00000006605)	ENSCGOG00000006599	hba1 (ENSCGOG00000006588)
Pike perch	MODERN SPECIES	89	baiap2l1a (ENSSLUG00000012906)	ENSSLUG00000012968	nptx2b (ENSSLUG00000012973)	trrap (ENSSLUG00000013020)	FAM20C (ENSSLUG00000013169)	foxl3 (ENSSLUG00000013414)	tom1l2 (ENSSLUG00000013425)	atpaf2 (ENSSLUG00000013434)	GID4 (ENSSLUG00000013447)	noxo1b (ENSSLUG00000013460) #14	noxo1b (ENSSLUG00000013478) #14	ENSSLUG00000013492	neurl2 (ENSSLUG00000013498)	msrb1b (ENSSLUG00000013503) #20	ENSSLUG00000013508	MEIOB (ENSSLUG00000013516) #22	mlst8 (ENSSLUG00000013523)	bricd5 (ENSSLUG00000013533)	pgp (ENSSLUG00000013539)	zdhhc4 (ENSSLUG00000013564)	grid2ipb (ENSSLUG00000013568)	arhgap17a (ENSSLUG00000013625)	lcmt1 (ENSSLUG00000015712)	aqp8a.1 (ENSSLUG00000015716)	ENSSLUG00000015724	hbae5 (ENSSLUG00000015741)	hbbe3 (ENSSLUG00000015765)	hbae4 (ENSSLUG00000015769)	ENSSLUG00000015811	foxj1b (ENSSLUG00000016253)	ubald1b (ENSSLUG00000016256)
Tiger tail seahorse	MODERN SPECIES	82	mst1 (ENSHCOG00000002166)	ENSHCOG00000002177	C3orf18 (ENSHCOG00000002182)	gnb1b (ENSHCOG00000002212)	tardbpb (ENSHCOG00000002224)	ENSHCOG00000002233	foxl3 (ENSHCOG00000002243)	tom1l2 (ENSHCOG00000002262)	atpaf2 (ENSHCOG00000002277)	GID4 (ENSHCOG00000002297)	noxo1b (ENSHCOG00000002329) #14	ENSHCOG00000002349	neurl2 (ENSHCOG00000002358)	msrb1b (ENSHCOG00000002366) #20	ENSHCOG00000002373	ENSHCOG00000002399 #22	mlst8 (ENSHCOG00000000070)	bricd5 (ENSHCOG00000002412)	pgp (ENSHCOG00000002413)	zdhhc4 (ENSHCOG00000002425)	ENSHCOG00000002430	grid2ipb (ENSHCOG00000002453)	arhgap17a (ENSHCOG00000002506)	lcmt1 (ENSHCOG00000002538)	ENSHCOG00000002546	ENSHCOG00000002554	ENSHCOG00000002568	sox9a (ENSHCOG00000002578)	ENSHCOG00000002604	ENSHCOG00000002612	VSTM4 (ENSHCOG00000002624)
Pinecone sodierfish	MODERN SPECIES	10	TECPR1 (ENSMMDG00005022524)	baiap2l1a (ENSMMDG00005022553)	ENSMMDG00005022561	nptx2b (ENSMMDG00005022564)	trrap (ENSMMDG00005022580)	FAM20C (ENSMMDG00005022586)	foxl3 (ENSMMDG00005022587)	atpaf2 (ENSMMDG00005022589)	GID4 (ENSMMDG00005022590)	noxo1b (ENSMMDG00005022592) #14	ENSMMDG00005002458 #16	ENSMMDG00005002472	neurl2 (ENSMMDG00005002499)	msrb1b (ENSMMDG00005002502) #20	ENSMMDG00005002513	MEIOB (ENSMMDG00005002539) #22	mlst8 (ENSMMDG00005002561)	bricd5 (ENSMMDG00005002595)	pgp (ENSMMDG00005002605)	zdhhc4 (ENSMMDG00005002617)	grid2ipb (ENSMMDG00005002642)	arhgap17a (ENSMMDG00005002772)	ENSMMDG00005003677	lcmt1 (ENSMMDG00005003689)	aqp8a.1 (ENSMMDG00005003894)	ENSMMDG00005005224	HBE1 (ENSMMDG00005005226)	HBE1 (ENSMMDG00005005229)	ENSMMDG00005005234	hbae4 (ENSMMDG00005005297)	ENSMMDG00005005300
Cod	MODERN SPECIES	9	ENSGMOG00000003909	baiap2l1a (ENSGMOG00000003872)	tmem130 (ENSGMOG00000035103)	nptx2b (ENSGMOG00000003855)	trrap (ENSGMOG00000003716)	ENSGMOG00000015538	foxl3 (ENSGMOG00000024921)	tom1l2 (ENSGMOG00000005578)	atpaf2 (ENSGMOG00000005553)	GID4 (ENSGMOG00000005534)	noxo1b (ENSGMOG00000032993) #14	ENSGMOG00000023717	ENSGMOG00000033069	msrb1b (ENSGMOG00000032780) #20	ENSGMOG00000027199	ENSGMOG00000005404 #22	mlst8 (ENSGMOG00000005385)	bricd5 (ENSGMOG00000029047)	pgp (ENSGMOG00000024072)	zdhhc4 (ENSGMOG00000005351)	grid2ipb (ENSGMOG00000005318)	arhgap17a (ENSGMOG00000035125)	lcmt1 (ENSGMOG00000001230)	aqp8a.1 (ENSGMOG00000001220)	ENSGMOG00000015825	ENSGMOG00000022654	ENSGMOG00000029846	HbB4 (ENSGMOG00000026357)	hbae4 (ENSGMOG00000030505)	HbB2 (ENSGMOG00000026934)	ENSGMOG00000035245
Osteoglossiformes	ANCESTRAL SPECIES	240				ENSGT00940000153560.b.b.a.g	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000182951.A.a.a.c.b	ENSGT00940000162800	ENSGT00940000156922.a.d	ENSGT00940000159156.r	ENSGT00940000156940.b	ENSGT00390000009492	ENSGT00940000164352.a	ENSGT00940000159689	ENSGT00940000165237.a	ENSGT00390000001723 #22	ENSGT00940000153514.a.a	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00840000129970	ENSGT00920000149163	ENSGT00940000157625.a.a.f	ENSGT01010000226408	ENSGT00940000156201.a.a	ENSGT00940000156372	ENSGT00940000157809.i.e	ENSGT00940000154590
P. kingsleyae	MODERN SPECIES	92	ghdc (ENSPKIG00000001116)	ENSPKIG00000001143	HCRT (ENSPKIG00000001162)	KCNH4 (ENSPKIG00000001192)	RAB5C (ENSPKIG00000001237)	kat2a (ENSPKIG00000001284)	ZNF385C (ENSPKIG00000001346)	nkiras2 (ENSPKIG00000001394)	DNAJC7 (ENSPKIG00000001416)	CNP (ENSPKIG00000001465)	ACLY (ENSPKIG00000001569)	ENSPKIG00000001748	ENSPKIG00000001760	neurl2 (ENSPKIG00000001781)	ENSPKIG00000001797	MEIOB (ENSPKIG00000001813) #22	narfl (ENSPKIG00000001845)	mlst8 (ENSPKIG00000001882)	bricd5 (ENSPKIG00000001902)	pgp (ENSPKIG00000001913)	e4f1 (ENSPKIG00000001942)	zdhhc4 (ENSPKIG00000001983)	GRID2IP (ENSPKIG00000002046)	arhgap17a (ENSPKIG00000002179)	lcmt1 (ENSPKIG00000002333)	ENSPKIG00000002377	ENSPKIG00000002384	HBE1 (ENSPKIG00000002401)	HBE1 (ENSPKIG00000002419)	ENSPKIG00000002432	ENSPKIG00000002442
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015021683	ENSSFOG00015021680	tom1l2 (ENSSFOG00015021636)	atpaf2 (ENSSFOG00015021608)	GID4 (ENSSFOG00015021591)	ENSSFOG00015021573 #14	ENSSFOG00015029862 #16	ENSSFOG00015021561	neurl2 (ENSSFOG00015021544)	foxj1b (ENSSFOG00015011662)	msrb1b (ENSSFOG00015021524) #20	ENSSFOG00015032866	msrb1b (ENSSFOG00015005529) #20	ENSSFOG00015029494	ENSSFOG00015032559	MEIOB (ENSSFOG00015021500) #22	narfl (ENSSFOG00015025130)	mlst8 (ENSSFOG00015021369)	bricd5 (ENSSFOG00015021321)	pgp (ENSSFOG00015026542)	e4f1 (ENSSFOG00015021291)	zdhhc4 (ENSSFOG00015021287)	GRID2IP (ENSSFOG00015021256)	ENSSFOG00015021243	arhgap17a (ENSSFOG00015021138)	lcmt1 (ENSSFOG00015021106)	ENSSFOG00015021084	HBE1 (ENSSFOG00015021097)	ENSSFOG00015030864	ENSSFOG00015025861	HBE1 (ENSSFOG00015018428)
Spotted gar	MODERN SPECIES	651	slc29a4a (ENSLOCG00000004787)	atp5mf (ENSLOCG00000004800)	cpsf4 (ENSLOCG00000004814)	PTCD1 (ENSLOCG00000004833)	bud31 (ENSLOCG00000004858)	pdap1b (ENSLOCG00000004873)	shmt1 (ENSLOCG00000004890)	ENSLOCG00000004911	smcr8a (ENSLOCG00000004927)	TOP3A (ENSLOCG00000004935)	flii (ENSLOCG00000004957)	LLGL1 (ENSLOCG00000004976)	alkbh5 (ENSLOCG00000005006)	MYO15A (ENSLOCG00000005025)	ENSLOCG00000005049	MEIOB (ENSLOCG00000005071) #22	fahd1 (ENSLOCG00000005085) #23	hagh (ENSLOCG00000005110) #24	HAGHL (ENSLOCG00000005131)	narfl (ENSLOCG00000005181)	zgc:113333 (ENSLOCG00000005196)	mlst8 (ENSLOCG00000005213)	bricd5 (ENSLOCG00000005225)	pgp (ENSLOCG00000005241)	e4f1 (ENSLOCG00000005261)	zdhhc4 (ENSLOCG00000005276)	GRID2IP (ENSLOCG00000005293)	ENSLOCG00000005317	slc5a11 (ENSLOCG00000005342)	arhgap17b (ENSLOCG00000005365)	lcmt1 (ENSLOCG00000005381)
Reedfish	MODERN SPECIES	2	SBK1 (ENSECRG00000010806)	ENSECRG00000010792	ENSECRG00000010779	ENSECRG00000010746	NLRC3 (ENSECRG00000010696)	ABCA3 (ENSECRG00000010674)	ccnf (ENSECRG00000010660)	ENSECRG00000010645	ENSECRG00000010638	cluap1 (ENSECRG00000010628)	WDR90 (ENSECRG00000010593)	rhot2 (ENSECRG00000010576)	ENSECRG00000010554	msrb1b (ENSECRG00000010542) #20	ENSECRG00000010537	MEIOB (ENSECRG00000010379) #22	fahd1 (ENSECRG00000010357) #23	hagh (ENSECRG00000010343) #24	HAGHL (ENSECRG00000010332)	narfl (ENSECRG00000010320)	zgc:113333 (ENSECRG00000010307)	mlst8 (ENSECRG00000010292)	bricd5 (ENSECRG00000010277)	pgp (ENSECRG00000010270)	e4f1 (ENSECRG00000010244)	zdhhc4 (ENSECRG00000010222)	grid2ipb (ENSECRG00000010203)	slc5a11 (ENSECRG00000010006)	arhgap17b (ENSECRG00000009950)	gng13b (ENSECRG00000009929)	traf7 (ENSECRG00000009881)
Elephant shark	MODERN SPECIES	1639	ENSCMIG00000017250	eif3ba (ENSCMIG00000017317)	BRAT1 (ENSCMIG00000017402)	znf598 (ENSCMIG00000017407) #11	syngr3a (ENSCMIG00000017413) #12	ENSCMIG00000017415 #14	ENSCMIG00000017418	tbl3 (ENSCMIG00000017424) #15	ENSCMIG00000017436 #16	ENSCMIG00000017438	rps2 (ENSCMIG00000017457) #17	ndufb10 (ENSCMIG00000017491) #18	ENSCMIG00000017501	msrb1b (ENSCMIG00000017516) #20	ENSCMIG00000017518 #21	MEIOB (ENSCMIG00000017536) #22	hagh (ENSCMIG00000017556) #24	narfl (ENSCMIG00000017571)	ENSCMIG00000017592	ENSCMIG00000017600	rpusd1 (ENSCMIG00000017602)	chtf18 (ENSCMIG00000017631)	ENSCMIG00000017681	gng13b (ENSCMIG00000017685)	ENSCMIG00000017687	bud31 (ENSCMIG00000017693)	prkrip1 (ENSCMIG00000017699)	PTCD1 (ENSCMIG00000017705)	cpsf4 (ENSCMIG00000017708)	ENSCMIG00000017710	slc29a4a (ENSCMIG00000017711)
Cyclostomata	ANCESTRAL SPECIES	645															ENSGT00950000182958	ENSGT00390000001723 #22
Lamprey	MODERN SPECIES	1484															ENSPMAG00000000058	ENSPMAG00000000059 #22
Hagfish	MODERN SPECIES	494										ndufb10 (ENSEBUG00000004394) #18	eef1g (ENSEBUG00000015009)	ALKBH2 (ENSEBUG00000006927)	ENSEBUG00000002011	ENSEBUG00000008411	ENSEBUG00000006671	ENSEBUG00000007178 #22	ENSEBUG00000011929	ENSEBUG00000003990	ENSEBUG00000010572