Rodentia_A	ANCESTRAL SPECIES	12	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT01100000263477.B.d.b	ENSGT00940000163382	ENSGT00940000163928 #17	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619 #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27	ENSGT01020000230614	ENSGT00940000161777.b	ENSGT00730000111212	ENSGT00940000158293	ENSGT00940000158567	ENSGT00880000138051.a	ENSGT00940000159231	ENSGT00390000000873.a.b	ENSGT00950000183119.a.e.b	ENSGT00940000158022
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT01100000263477.B.d.b	ENSGT00940000163382	ENSGT00940000163928 #17	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619.l #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27	ENSGT00730000111212	ENSGT00940000158293	ENSGT00940000158567	ENSGT00880000138051.a	ENSGT00940000159231	ENSGT00390000000873.a.b	ENSGT00950000183119.a.e.b	ENSGT00940000158022	ENSGT00950000183006.B.f.b.a	ENSGT00950000183006.A.b
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT01020000230364.a.a.b.a #8	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT01100000263477.B.d.b	ENSGT00940000163928 #17	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619.l #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27	ENSGT00730000111212	ENSGT00940000158293	ENSGT00940000158567	ENSGT00880000138051.a	ENSGT00940000159231	ENSGT00390000000873.a.b	ENSGT00950000183119.a.e.b	ENSGT00940000158022	ENSGT00950000183006.B.f.b.a	ENSGT00840000131243
Hystricomorpha_b	ANCESTRAL SPECIES	85	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #8	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT00940000163928 #17	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619.l #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27
Long-tailed chinchilla	MODERN SPECIES	186	GPR37 (ENSCLAG00000004210) #7	SPAM1 (ENSCLAG00000004068) #8	HYAL4 (ENSCLAG00000004024) #9	ENSCLAG00000003732 #10	WASL (ENSCLAG00000003691) #11	LMOD2 (ENSCLAG00000003580) #12	ASB15 (ENSCLAG00000007102) #13	NDUFA5 (ENSCLAG00000006860) #14	IQUB (ENSCLAG00000006424) #15	SLC13A1 (ENSCLAG00000011173) #16	RNF133 (ENSCLAG00000016991) #17	CADPS2 (ENSCLAG00000008518) #18	FEZF1 (ENSCLAG00000007477) #19	AASS (ENSCLAG00000008604) #20	PTPRZ1 (ENSCLAG00000007614) #21	FAM3C (ENSCLAG00000006898) #22	WNT16 (ENSCLAG00000006294) #23	CPED1 (ENSCLAG00000005090) #24	ING3 (ENSCLAG00000004878) #25	TSPAN12 (ENSCLAG00000004712) #26	KCND2 (ENSCLAG00000004173) #27	ENSCLAG00000004090 #28
Degu	MODERN SPECIES	211	HYAL4 (ENSODEG00000013266) #9	WASL (ENSODEG00000012985) #11	LMOD2 (ENSODEG00000011500) #12	ASB15 (ENSODEG00000012356) #13	ENSODEG00000011877 #14	IQUB (ENSODEG00000012185) #15	SLC13A1 (ENSODEG00000012195) #16	ENSODEG00000011569	RNF133 (ENSODEG00000011427) #17	CADPS2 (ENSODEG00000011793) #18	FEZF1 (ENSODEG00000011539) #19	AASS (ENSODEG00000011908) #20	PTPRZ1 (ENSODEG00000015174) #21	ENSODEG00000011725	ENSODEG00000013194	FAM3C (ENSODEG00000010369) #22	WNT16 (ENSODEG00000010930) #23	CPED1 (ENSODEG00000011686) #24	ING3 (ENSODEG00000012244) #25	TSPAN12 (ENSODEG00000012176) #26	KCND2 (ENSODEG00000011671) #27	ENSODEG00000010823	ENSODEG00000019823
Guinea pig	MODERN SPECIES	11	SPAM1 (ENSCPOG00000001716) #8	HYAL4 (ENSCPOG00000013594) #9	ENSCPOG00000027329 #10	WASL (ENSCPOG00000003284) #11	LMOD2 (ENSCPOG00000034650) #12	ASB15 (ENSCPOG00000025748) #13	NDUFA5 (ENSCPOG00000030629) #14	IQUB (ENSCPOG00000006286) #15	SLC13A1 (ENSCPOG00000006440) #16	TAS2R16 (ENSCPOG00000007419)	RNF133 (ENSCPOG00000035136) #17	CADPS2 (ENSCPOG00000005875) #18	FEZF1 (ENSCPOG00000013096) #19	AASS (ENSCPOG00000007522) #20	PTPRZ1 (ENSCPOG00000039416) #21	FAM3C (ENSCPOG00000005639) #22	WNT16 (ENSCPOG00000005635) #23	CPED1 (ENSCPOG00000007693) #24	ING3 (ENSCPOG00000023225) #25	TSPAN12 (ENSCPOG00000011851) #26	KCND2 (ENSCPOG00000011847) #27	LSM8 (ENSCPOG00000035673)	CTTNBP2 (ENSCPOG00000004194)	CFTR (ENSCPOG00000012767)	ASZ1 (ENSCPOG00000009750)	WNT2 (ENSCPOG00000033615)	ST7 (ENSCPOG00000015621)	CAPZA2 (ENSCPOG00000007677)	MET (ENSCPOG00000013525)	CAV1 (ENSCPOG00000002524)	ENSCPOG00000031628
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5	SPAM1 (ENSHGLG00000006133) #8	ENSHGLG00000007516 #10	WASL (ENSHGLG00000008493) #11	LMOD2 (ENSHGLG00000003814) #12	ASB15 (ENSHGLG00000004129) #13	NDUFA5 (ENSHGLG00000042692) #14	IQUB (ENSHGLG00000007200) #15	SLC13A1 (ENSHGLG00000019390) #16	ENSHGLG00000048989	TAS2R16 (ENSHGLG00000044095)	RNF148 (ENSHGLG00000033439)	CADPS2 (ENSHGLG00000017751) #18	FEZF1 (ENSHGLG00000006102) #19	AASS (ENSHGLG00000006193) #20	PTPRZ1 (ENSHGLG00000007675) #21	ENSHGLG00000019063 #22	WNT16 (ENSHGLG00000040512) #23	CPED1 (ENSHGLG00000007984) #24	ING3 (ENSHGLG00000008632) #25	TSPAN12 (ENSHGLG00000009931) #26	ENSHGLG00000010555 #27	ENSHGLG00000010919	ENSHGLG00000006757	ENSHGLG00000038825	NAA38 (ENSHGLG00000043821)	ENSHGLG00000037153	ENSHGLG00000002151	ENSHGLG00000041588	ASZ1 (ENSHGLG00000002226)	WNT2 (ENSHGLG00000036817)	ENSHGLG00000003310
Naked mole-rat female	MODERN SPECIES	7	ZNF622 (ENSHGLG00000040123)	ENSHGLG00000042572	ENSHGLG00000047002	ENSHGLG00000005413	FBXL7 (ENSHGLG00000039624)	ENSHGLG00000049744	ANKH (ENSHGLG00000009005)	OTULIN (ENSHGLG00000008326)	ENSHGLG00000040674	OTULINL (ENSHGLG00000007364)	ENSHGLG00000004346	ENSHGLG00000004104	ENSHGLG00000034661	ENSHGLG00000017230	ENSHGLG00000034637	ENSHGLG00000032946 #22	ENSHGLG00000007547	ENSHGLG00000015867	ANKRD33B (ENSHGLG00000036584)	ENSHGLG00000004654	MARCHF6 (ENSHGLG00000003823)	CMBL (ENSHGLG00000044949)	CCT5 (ENSHGLG00000015664)	ATPSCKMT (ENSHGLG00000033623)	ENSHGLG00000036712	ENSHGLG00000039033	ENSHGLG00000039099	ENSHGLG00000035254	ENSHGLG00000049198	ENSHGLG00000045152	SEMA5A (ENSHGLG00000017629)
Naked mole-rat female	MODERN SPECIES	9	C18orf25 (ENSHGLG00000041108)	ENSHGLG00000036445	ENSHGLG00000036850	ENSHGLG00000009522	PSTPIP2 (ENSHGLG00000005740)	SLC14A1 (ENSHGLG00000007316)	ENSHGLG00000005880	ENSHGLG00000046959	ENSHGLG00000033588	ENSHGLG00000040364	ENSHGLG00000001864	ENSHGLG00000041163	ENSHGLG00000043125	ENSHGLG00000002070	ENSHGLG00000039994	ENSHGLG00000048003 #22	ENSHGLG00000048589	RIT2 (ENSHGLG00000002499)	ENSHGLG00000037189	ENSHGLG00000001588	PIK3C3 (ENSHGLG00000002317)	ENSHGLG00000049729	ENSHGLG00000040708	ENSHGLG00000003144	ENSHGLG00000049047	CELF4 (ENSHGLG00000003130)	KIAA1328 (ENSHGLG00000044346)	ENSHGLG00000035997	FHOD3 (ENSHGLG00000000428)	MOCOS (ENSHGLG00000001785)	ELP2 (ENSHGLG00000001838)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT01020000230364.a.a.b.a #8	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT01100000263477.B.d.b	ENSGT00940000163382	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619 #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27	ENSGT01020000230614	ENSGT00940000161777.b	ENSGT00730000111212	ENSGT00940000158293	ENSGT00940000158567	ENSGT00880000138051.a	ENSGT00940000159231	ENSGT00390000000873.a.b	ENSGT00950000183119.a.e.b	ENSGT00940000182222
Marmotini	ANCESTRAL SPECIES	35	ENSGT01020000230364.a.a.b.a #8	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT01100000263477.B.d.b	ENSGT00940000163382	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619 #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27	ENSGT01020000230614	ENSGT00940000161777.b	ENSGT00730000111212.y	ENSGT00940000158293	ENSGT00940000158567	ENSGT00880000138051.a	ENSGT00940000159231	ENSGT00390000000873.a.b	ENSGT00950000183119.a.e.b	ENSGT00940000158022
Marmotini_b	ANCESTRAL SPECIES	175	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #8	ENSGT01020000230364.a.a.b.b #9	ENSGT01020000230364.a.b #10	ENSGT00730000110895.b.a #11	ENSGT00940000156567 #12	ENSGT00940000157073 #13	ENSGT00390000008099 #14	ENSGT00390000014326 #15	ENSGT01030000234550.a.a.d.a.a #16	ENSGT01100000263477.B.d.b	ENSGT00590000083094.a.b #18	ENSGT00940000159477 #19	ENSGT00390000013249 #20	ENSGT00940000155529.C #21	ENSGT00950000183004.a.b.a.a #22	ENSGT00940000157480 #23	ENSGT00390000015216 #24	ENSGT00940000156619 #25	ENSGT00510000047764 #26	ENSGT00940000155472.a.a #27	ENSGT01020000230614
Arctic ground squirrel	MODERN SPECIES	62	TMEM229A (ENSUPAG00010017518)	SPAM1 (ENSUPAG00010017450) #8	HYAL4 (ENSUPAG00010017443) #9	ENSUPAG00010017312 #10	WASL (ENSUPAG00010017300) #11	LMOD2 (ENSUPAG00010017292) #12	ASB15 (ENSUPAG00010017255) #13	ENSUPAG00010017244 #14	IQUB (ENSUPAG00010017217) #15	SLC13A1 (ENSUPAG00010017198) #16	TAS2R16 (ENSUPAG00010017195)	CADPS2 (ENSUPAG00010016014) #18	FEZF1 (ENSUPAG00010015995) #19	AASS (ENSUPAG00010015951) #20	PTPRZ1 (ENSUPAG00010015800) #21	FAM3C (ENSUPAG00010015781) #22	WNT16 (ENSUPAG00010015755) #23	CPED1 (ENSUPAG00010015735) #24	ING3 (ENSUPAG00010015709) #25	TSPAN12 (ENSUPAG00010015684) #26	KCND2 (ENSUPAG00010015672) #27	ENSUPAG00010015665
Squirrel	MODERN SPECIES	205	GPR37 (ENSSTOG00000008778) #7	TMEM229A (ENSSTOG00000028439)	SPAM1 (ENSSTOG00000002602) #8	HYAL4 (ENSSTOG00000002598) #9	ENSSTOG00000026435 #10	WASL (ENSSTOG00000001892) #11	LMOD2 (ENSSTOG00000026603) #12	ASB15 (ENSSTOG00000001877) #13	NDUFA5 (ENSSTOG00000027404) #14	IQUB (ENSSTOG00000008080) #15	SLC13A1 (ENSSTOG00000012086) #16	CADPS2 (ENSSTOG00000008633) #18	FEZF1 (ENSSTOG00000022201) #19	AASS (ENSSTOG00000015486) #20	PTPRZ1 (ENSSTOG00000025909) #21	FAM3C (ENSSTOG00000006608) #22	WNT16 (ENSSTOG00000006593) #23	CPED1 (ENSSTOG00000006527) #24	ING3 (ENSSTOG00000004039) #25	TSPAN12 (ENSSTOG00000000209) #26	KCND2 (ENSSTOG00000030945) #27
Alpin marmot	MODERN SPECIES	22	SPAM1 (ENSMMMG00000015253) #8	HYAL4 (ENSMMMG00000015235) #9	ENSMMMG00000015187 #10	WASL (ENSMMMG00000015176) #11	LMOD2 (ENSMMMG00000015170) #12	ASB15 (ENSMMMG00000015148) #13	NDUFA5 (ENSMMMG00000015124) #14	IQUB (ENSMMMG00000015110) #15	SLC13A1 (ENSMMMG00000015090) #16	TAS2R16 (ENSMMMG00000015086)	RNF148 (ENSMMMG00000015069)	CADPS2 (ENSMMMG00000015032) #18	FEZF1 (ENSMMMG00000015014) #19	AASS (ENSMMMG00000014988) #20	PTPRZ1 (ENSMMMG00000014884) #21	FAM3C (ENSMMMG00000014872) #22	WNT16 (ENSMMMG00000014850) #23	CPED1 (ENSMMMG00000014806) #24	ING3 (ENSMMMG00000014787) #25	TSPAN12 (ENSMMMG00000014770) #26	KCND2 (ENSMMMG00000014763) #27	ENSMMMG00000014759	ENSMMMG00000014735	ENSMMMG00000014734	CTTNBP2 (ENSMMMG00000014680)	ENSMMMG00000014643	ASZ1 (ENSMMMG00000014625)	WNT2 (ENSMMMG00000014617)	ST7 (ENSMMMG00000014467)	CAPZA2 (ENSMMMG00000014429)	MET (ENSMMMG00000014368)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	SPAM1 (ENSSVLG00005007942) #8	HYAL4 (ENSSVLG00005008218) #9	ENSSVLG00005008265 #10	WASL (ENSSVLG00005008370) #11	LMOD2 (ENSSVLG00005008381) #12	ASB15 (ENSSVLG00005008414) #13	ENSSVLG00005008480 #14	ENSSVLG00005008606 #15	SLC13A1 (ENSSVLG00005008725) #16	TAS2R16 (ENSSVLG00005008847)	CADPS2 (ENSSVLG00005008973) #18	FEZF1 (ENSSVLG00005009793) #19	AASS (ENSSVLG00005009890) #20	PTPRZ1 (ENSSVLG00005010362) #21	ENSSVLG00005013132	FAM3C (ENSSVLG00005013224) #22	WNT16 (ENSSVLG00005013269) #23	CPED1 (ENSSVLG00005013406) #24	ING3 (ENSSVLG00005013543) #25	TSPAN12 (ENSSVLG00005013639) #26	KCND2 (ENSSVLG00005013713) #27	ENSSVLG00005013739	ENSSVLG00005013879	LSM8 (ENSSVLG00005014022)	CTTNBP2 (ENSSVLG00005014155)	CFTR (ENSSVLG00005014470)	ENSSVLG00005015363	WNT2 (ENSSVLG00005015494)	ST7 (ENSSVLG00005015943)	CAPZA2 (ENSSVLG00005017995)	ENSSVLG00005018122
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005024377	LDOC1 (ENSSVLG00005024361)	ENSSVLG00005024344	ENSSVLG00005024337	ENSSVLG00005024311	ENSSVLG00005024281	ENSSVLG00005024259	SLITRK4 (ENSSVLG00005024239)	ENSSVLG00005024221	ENSSVLG00005024178	ENSSVLG00005024153	ENSSVLG00005024138	SLITRK2 (ENSSVLG00005024126)	ENSSVLG00005024095	ENSSVLG00005024085	ENSSVLG00005024061 #22	FMR1 (ENSSVLG00005023968)	FMR1NB (ENSSVLG00005023923)	AFF2 (ENSSVLG00005023603)	IDS (ENSSVLG00005023489)	ENSSVLG00005023440	ENSSVLG00005023405	ENSSVLG00005023391	TMEM185A (ENSSVLG00005023306)	ENSSVLG00005023272	ENSSVLG00005023222	ENSSVLG00005023183	ENSSVLG00005023146	MTM1 (ENSSVLG00005023047)	MTMR1 (ENSSVLG00005022934)	CD99L2 (ENSSVLG00005022834)