Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.f ##7	ENSGT00950000183018.b.k.a.e #7	ENSGT01040000240406.A.b.a.b #8	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #9	ENSGT01040000240406.A.b.a.a.a.a.b #10	ENSGT01040000240406.A.b.a.a.b #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a #15	ENSGT00940000162868 #17	ENSGT00530000064170.f #18	ENSGT00550000074857 #19	ENSGT00730000111075.a #20	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #26	ENSGT00940000161823 #27	ENSGT00390000004279 #28	ENSGT01010000222336.a.a.b.a #29	ENSGT01010000222336.a.a.b.b #30	ENSGT00940000158875 #31	ENSGT00950000182910.a.b #33	ENSGT00940000160714 #34	ENSGT00390000007901	ENSGT00950000182992.a.a #35	ENSGT00940000157688 #36	ENSGT00930000151031 #37	ENSGT01000000214440.A.b
Eurasian red squirrel	MODERN SPECIES	6	NIPSNAP3A (ENSSVLG00005023053) #7	OR13D1 (ENSSVLG00005023029) #8	ENSSVLG00005023004 #9	ENSSVLG00005022990 #10	ENSSVLG00005022984 #11	ENSSVLG00005022968 #12	ENSSVLG00005022956 #13	ENSSVLG00005022940 #14	ENSSVLG00005022930 #15	ENSSVLG00005022901 #16	OR13F1 (ENSSVLG00005022886) #17	ENSSVLG00005022873 #18	SMC2 (ENSSVLG00005022706) #19	ENSSVLG00005022668 #20	ENSSVLG00005022639 #21	GRIN3A (ENSSVLG00005022487) #22	RNF20 (ENSSVLG00005022444) #23	PGAP4 (ENSSVLG00005022426) #24	ENSSVLG00005022415 #25	ALDOB (ENSSVLG00005022272) #26	ZNF189 (ENSSVLG00005022220) #27	ENSSVLG00005022189 #28	BAAT (ENSSVLG00005022141) #29	ENSSVLG00005022075 #30	PLPPR1 (ENSSVLG00005022005) #31	ENSSVLG00005021949 #32	CAVIN4 (ENSSVLG00005021929) #33	TMEFF1 (ENSSVLG00005021870) #34	TEX10 (ENSSVLG00005021757) #35	INVS (ENSSVLG00005021701) #36	ERP44 (ENSSVLG00005021657) #37
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.f ##7	ENSGT00950000183018.b.k.a.e #7	ENSGT01040000240406.A.b.a.b.s.a #8	ENSGT01040000240406.A.b.a.b.t.a #8	ENSGT01040000240406.A.b.a.b.t.b #8	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #9	ENSGT01040000240406.A.b.a.a.a.a.b #10	ENSGT01040000240406.A.b.a.a.b #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a #15	ENSGT00940000162868 #17	ENSGT00530000064170.f #18	ENSGT00550000074857 #19	ENSGT00730000111075.a #20	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #26	ENSGT00940000161823 #27	ENSGT00390000004279 #28	ENSGT01010000222336.a.a.b.a #29	ENSGT01010000222336.a.a.b.b #30	ENSGT00940000158875 #31	ENSGT00950000182910.a.b #33	ENSGT00940000160714 #34	ENSGT00390000007901	ENSGT00950000182992.a.a #35	ENSGT00940000157688 #36	ENSGT00930000151031 #37	ENSGT01000000214440.A.b
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00940000154658.b	ENSGT00950000183018.b.k.b ##7	ENSGT01040000240406.A.b.a.b.s.b #8	ENSGT01040000240406.A.b.a.b.s.a #8	ENSGT01040000240406.A.b.a.b.t.a #8	ENSGT01040000240406.A.b.a.b.t.b #8	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #9	ENSGT01040000240406.A.b.a.a.a.a.b #10	ENSGT01040000240406.A.b.a.a.b #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a #15	ENSGT00940000162868 #17	ENSGT00530000064170.f #18	ENSGT00550000074857 #19	ENSGT00730000111075.a #20	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #26	ENSGT00940000161823 #27	ENSGT00390000004279 #28	ENSGT01010000222336.a.a.b.a #29	ENSGT01010000222336.a.a.b.b #30	ENSGT00940000158875 #31	ENSGT00950000182910.a.b #33	ENSGT00940000160714 #34	ENSGT00390000007901	ENSGT00950000182992.a.a #35	ENSGT00940000157688 #36	ENSGT00930000151031 #37	ENSGT01000000214440.A.b
Squirrel	MODERN SPECIES	124															ENSSTOG00000004766	GRIN3A (ENSSTOG00000002475) #22	RNF20 (ENSSTOG00000027656) #23	PGAP4 (ENSSTOG00000007055) #24	ALDOB (ENSSTOG00000007034) #26	ZNF189 (ENSSTOG00000024337) #27	MRPL50 (ENSSTOG00000026770) #28	BAAT (ENSSTOG00000020683) #29	ENSSTOG00000025846 #30	PLPPR1 (ENSSTOG00000001576) #31	CAVIN4 (ENSSTOG00000015661) #33	TMEFF1 (ENSSTOG00000015655) #34	MSANTD3 (ENSSTOG00000026763)	TEX10 (ENSSTOG00000010151) #35	INVS (ENSSTOG00000010139) #36	ERP44 (ENSSTOG00000010127) #37	STX17 (ENSSTOG00000010118)
Arctic ground squirrel	MODERN SPECIES	19	SLC44A1 (ENSUPAG00010014647)	ABCA1 (ENSUPAG00010014737)	NIPSNAP3B (ENSUPAG00010014783) ##7	ENSUPAG00010014870 #8	ENSUPAG00010014879 #8	ENSUPAG00010014882 #8	ENSUPAG00010014884 #8	ENSUPAG00010014889 #9	ENSUPAG00010014897 #10	ENSUPAG00010014902 #12	OR13C3 (ENSUPAG00010014917) #15	OR13F1 (ENSUPAG00010014923) #17	ENSUPAG00010014932 #18	SMC2 (ENSUPAG00010014939) #19	ENSUPAG00010015011 #20	GRIN3A (ENSUPAG00010015019) #22	RNF20 (ENSUPAG00010015055) #23	PGAP4 (ENSUPAG00010015128) #24	ALDOB (ENSUPAG00010015132) #26	ZNF189 (ENSUPAG00010015145) #27	MRPL50 (ENSUPAG00010015153) #28	BAAT (ENSUPAG00010015156) #29	ENSUPAG00010015161	PLPPR1 (ENSUPAG00010015166) #31	CAVIN4 (ENSUPAG00010015173) #33	TMEFF1 (ENSUPAG00010015180) #34	TEX10 (ENSUPAG00010015228) #35	INVS (ENSUPAG00010015254) #36	ERP44 (ENSUPAG00010015433) #37	STX17 (ENSUPAG00010015454)	NR4A3 (ENSUPAG00010015475)
Alpin marmot	MODERN SPECIES	30	ENSMMMG00000003848 ##7	ENSMMMG00000003883 #7	ENSMMMG00000003893 #8	ENSMMMG00000003902 #8	ENSMMMG00000003908 #8	ENSMMMG00000003910 #8	ENSMMMG00000003917 #9	ENSMMMG00000003927 #10	ENSMMMG00000003934 #10	ENSMMMG00000003935 #12	OR13C8 (ENSMMMG00000003941) #13	OR13C3 (ENSMMMG00000003944) #15	OR13F1 (ENSMMMG00000003956) #17	ENSMMMG00000003962 #18	SMC2 (ENSMMMG00000003971) #19	GRIN3A (ENSMMMG00000004037) #22	ENSMMMG00000004086	RNF20 (ENSMMMG00000004104) #23	PGAP4 (ENSMMMG00000004146) #24	ALDOB (ENSMMMG00000004150) #26	ZNF189 (ENSMMMG00000004162) #27	MRPL50 (ENSMMMG00000004177) #28	BAAT (ENSMMMG00000004181) #29	ENSMMMG00000004195 #30	PLPPR1 (ENSMMMG00000004212) #31	CAVIN4 (ENSMMMG00000004236) #33	ENSMMMG00000004244 #34	MSANTD3 (ENSMMMG00000004255)	TEX10 (ENSMMMG00000004278) #35	INVS (ENSMMMG00000004317) #36	ENSMMMG00000004415