Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000157979 #8	ENSGT00940000157174 #9	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.a #11	ENSGT01040000240406.A.b.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #14	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT01040000240406.A.b.a.a.b ##13	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a #17	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b #20	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857 #21	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b ##28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000157979 #8	ENSGT00940000157174 #9	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.a.c #11	ENSGT00950000183018.b.k.a.d #12	ENSGT01040000240406.A.b.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #14	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a #17	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b #20	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857 #21	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36	ENSGT00950000183038.a.b.b.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00390000014471 #7	ENSGT00940000157979 #8	ENSGT00940000157174 #9	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.a.c #11	ENSGT00950000183018.b.k.a.d #12	ENSGT01040000240406.A.b.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #14	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a #17	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b #20	ENSGT00940000162868	ENSGT00550000074857 #21	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36	ENSGT00950000183038.a.b.b.a #37
Guinea pig	MODERN SPECIES	27	FKTN (ENSCPOG00000036881) #7	FSD1L (ENSCPOG00000007088) #8	SLC44A1 (ENSCPOG00000015289) #9	ABCA1 (ENSCPOG00000009387) #10	ENSCPOG00000038625 #11	ENSCPOG00000009373 #12	OR13D1 (ENSCPOG00000005936) #13	ENSCPOG00000019951 #14	ENSCPOG00000039329 #15	ENSCPOG00000037364 #16	ENSCPOG00000031883 #17	ENSCPOG00000013656 #18	ENSCPOG00000007377 #19	OR13C4 (ENSCPOG00000031054) #20	SMC2 (ENSCPOG00000008189) #21	GRIN3A (ENSCPOG00000006667) #22	RNF20 (ENSCPOG00000012903) #23	PGAP4 (ENSCPOG00000015138) #24	ALDOB (ENSCPOG00000012385) #25	ZNF189 (ENSCPOG00000015555) #26	MRPL50 (ENSCPOG00000034033) #27	BAAT (ENSCPOG00000038785) #28	ENSCPOG00000031580 #29	PLPPR1 (ENSCPOG00000006791) #30	CAVIN4 (ENSCPOG00000005674) #31	TMEFF1 (ENSCPOG00000005669) #32	TEX10 (ENSCPOG00000008514) #33	INVS (ENSCPOG00000008363) #34	ERP44 (ENSCPOG00000040125) #35	STX17 (ENSCPOG00000037367) #36	NR4A3 (ENSCPOG00000008346) #37
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000162158	ENSGT00940000162582	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000160867	ENSGT00390000014471 #7	ENSGT00940000157979 #8	ENSGT00940000157174 #9	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.a.d #12	ENSGT01040000240406.A.b.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT00940000162868	ENSGT00550000074857 #21	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36	ENSGT00950000183038.a.b.b.a #37
Long-tailed chinchilla	MODERN SPECIES	126	RAD23B (ENSCLAG00000010897)	ENSCLAG00000011424	ZNF462 (ENSCLAG00000016925)	TMEM38B (ENSCLAG00000014738)	TAL2 (ENSCLAG00000012271)	FKTN (ENSCLAG00000010039) #7	FSD1L (ENSCLAG00000010824) #8	SLC44A1 (ENSCLAG00000015036) #9	ABCA1 (ENSCLAG00000015148) #10	ENSCLAG00000012516 #12	ENSCLAG00000013135 #12	OR13D1 (ENSCLAG00000017813) #13	ENSCLAG00000018070 #15	OR13F1 (ENSCLAG00000017722)	SMC2 (ENSCLAG00000010498) #21	GRIN3A (ENSCLAG00000009983) #22	ENSCLAG00000012103	RNF20 (ENSCLAG00000013001) #23	PGAP4 (ENSCLAG00000010478) #24	ALDOB (ENSCLAG00000013299) #25	ZNF189 (ENSCLAG00000013678) #26	MRPL50 (ENSCLAG00000010221) #27	BAAT (ENSCLAG00000013825) #28	PLPPR1 (ENSCLAG00000014192) #30	CAVIN4 (ENSCLAG00000014331) #31	TMEFF1 (ENSCLAG00000010573) #32	TEX10 (ENSCLAG00000011567) #33	INVS (ENSCLAG00000012495) #34	ERP44 (ENSCLAG00000014199) #35	STX17 (ENSCLAG00000013623) #36	NR4A3 (ENSCLAG00000011240) #37
Degu	MODERN SPECIES	135	SLC44A1 (ENSODEG00000004590) #9	ENSODEG00000004309	ABCA1 (ENSODEG00000005925) #10	ENSODEG00000004959 #12	ENSODEG00000004904 #12	ENSODEG00000019193 #15	ENSODEG00000004859	OR13C4 (ENSODEG00000004667) #20	ENSODEG00000004581	ENSODEG00000004541	SMC2 (ENSODEG00000004258) #21	ENSODEG00000019030	ENSODEG00000004824	ENSODEG00000004804	PPP3R2 (ENSODEG00000004786)	GRIN3A (ENSODEG00000004363) #22	ENSODEG00000004153 #23	ENSODEG00000019053 #24	ENSODEG00000004110	ALDOB (ENSODEG00000004052) #25	ZNF189 (ENSODEG00000005286) #26	MRPL50 (ENSODEG00000005275) #27	BAAT (ENSODEG00000005191) #28	PLPPR1 (ENSODEG00000005164) #30
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000034042 #12	OR13D1 (ENSHGLG00000020669) #13	ENSHGLG00000004704 #15	ENSHGLG00000049175	OR13C3 (ENSHGLG00000020079) #17	OR13C4 (ENSHGLG00000047893) #20	OR13F1 (ENSHGLG00000005682)	ENSHGLG00000032079	ENSHGLG00000049812	SMC2 (ENSHGLG00000007747) #21	ENSHGLG00000049087	ENSHGLG00000012037	ENSHGLG00000041020	ENSHGLG00000008760	ENSHGLG00000032676	GRIN3A (ENSHGLG00000014346) #22	RNF20 (ENSHGLG00000016128) #23	PGAP4 (ENSHGLG00000008776) #24	ALDOB (ENSHGLG00000010812) #25	ZNF189 (ENSHGLG00000011643) #26	MRPL50 (ENSHGLG00000004483) #27	ENSHGLG00000042541	BAAT (ENSHGLG00000006846) #28	ENSHGLG00000037623	PLPPR1 (ENSHGLG00000008477) #30	MURC (ENSHGLG00000035685) #31	TMEFF1 (ENSHGLG00000003019) #32	MSANTD3 (ENSHGLG00000004426)	TEX10 (ENSHGLG00000004561) #33	INVS (ENSHGLG00000005116) #34	ENSHGLG00000032583
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000157979 #8	ENSGT00940000157174 #9	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.a.f #11	ENSGT00950000183018.b.k.a.e #11	ENSGT01040000240406.A.b.a.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #14	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT01040000240406.A.b.a.a.b ##13	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a #17	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857 #21	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b ##28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.a.f #11	ENSGT00950000183018.b.k.a.e #11	ENSGT01040000240406.A.b.a.b.s.a #13	ENSGT01040000240406.A.b.a.b.t.a #13	ENSGT01040000240406.A.b.a.b.t.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #14	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT01040000240406.A.b.a.a.b ##13	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a #17	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857 #21	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b ##28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00940000154658.b #10	ENSGT00950000183018.b.k.b ##11	ENSGT01040000240406.A.b.a.b.s.b #13	ENSGT01040000240406.A.b.a.b.s.a #13	ENSGT01040000240406.A.b.a.b.t.a #13	ENSGT01040000240406.A.b.a.b.t.b #13	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b #14	ENSGT01040000240406.A.b.a.a.a.a.b #15	ENSGT01040000240406.A.b.a.a.b ##13	ENSGT01040000240406.A.b.a.a.a.a.a.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a #17	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857 #21	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b ##28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901	ENSGT00950000182992.a.a #33	ENSGT00940000157688 #34	ENSGT00930000151031 #35	ENSGT01000000214440.A.b #36
Squirrel	MODERN SPECIES	124															ENSSTOG00000004766	GRIN3A (ENSSTOG00000002475) #22	RNF20 (ENSSTOG00000027656) #23	PGAP4 (ENSSTOG00000007055) #24	ALDOB (ENSSTOG00000007034) #25	ZNF189 (ENSSTOG00000024337) #26	MRPL50 (ENSSTOG00000026770) #27	BAAT (ENSSTOG00000020683) #28	ENSSTOG00000025846 ##28	PLPPR1 (ENSSTOG00000001576) #30	CAVIN4 (ENSSTOG00000015661) #31	TMEFF1 (ENSSTOG00000015655) #32	MSANTD3 (ENSSTOG00000026763)	TEX10 (ENSSTOG00000010151) #33	INVS (ENSSTOG00000010139) #34	ERP44 (ENSSTOG00000010127) #35	STX17 (ENSSTOG00000010118) #36
Arctic ground squirrel	MODERN SPECIES	19	SLC44A1 (ENSUPAG00010014647) #9	ABCA1 (ENSUPAG00010014737) #10	NIPSNAP3B (ENSUPAG00010014783) ##11	ENSUPAG00010014870 #13	ENSUPAG00010014879 #13	ENSUPAG00010014882 #13	ENSUPAG00010014884 #13	ENSUPAG00010014889 #14	ENSUPAG00010014897 #15	ENSUPAG00010014902 ##13	OR13C3 (ENSUPAG00010014917) #17	OR13F1 (ENSUPAG00010014923)	ENSUPAG00010014932	SMC2 (ENSUPAG00010014939) #21	ENSUPAG00010015011	GRIN3A (ENSUPAG00010015019) #22	RNF20 (ENSUPAG00010015055) #23	PGAP4 (ENSUPAG00010015128) #24	ALDOB (ENSUPAG00010015132) #25	ZNF189 (ENSUPAG00010015145) #26	MRPL50 (ENSUPAG00010015153) #27	BAAT (ENSUPAG00010015156) #28	ENSUPAG00010015161	PLPPR1 (ENSUPAG00010015166) #30	CAVIN4 (ENSUPAG00010015173) #31	TMEFF1 (ENSUPAG00010015180) #32	TEX10 (ENSUPAG00010015228) #33	INVS (ENSUPAG00010015254) #34	ERP44 (ENSUPAG00010015433) #35	STX17 (ENSUPAG00010015454) #36	NR4A3 (ENSUPAG00010015475) #37
Alpin marmot	MODERN SPECIES	30	ENSMMMG00000003848 #11	ENSMMMG00000003883 #11	ENSMMMG00000003893 #13	ENSMMMG00000003902 #13	ENSMMMG00000003908 #13	ENSMMMG00000003910 #13	ENSMMMG00000003917 #14	ENSMMMG00000003927 #15	ENSMMMG00000003934 #15	ENSMMMG00000003935 ##13	OR13C8 (ENSMMMG00000003941) #16	OR13C3 (ENSMMMG00000003944) #17	OR13F1 (ENSMMMG00000003956)	ENSMMMG00000003962	SMC2 (ENSMMMG00000003971) #21	GRIN3A (ENSMMMG00000004037) #22	ENSMMMG00000004086	RNF20 (ENSMMMG00000004104) #23	PGAP4 (ENSMMMG00000004146) #24	ALDOB (ENSMMMG00000004150) #25	ZNF189 (ENSMMMG00000004162) #26	MRPL50 (ENSMMMG00000004177) #27	BAAT (ENSMMMG00000004181) #28	ENSMMMG00000004195 ##28	PLPPR1 (ENSMMMG00000004212) #30	CAVIN4 (ENSMMMG00000004236) #31	ENSMMMG00000004244 #32	MSANTD3 (ENSMMMG00000004255)	TEX10 (ENSMMMG00000004278) #33	INVS (ENSMMMG00000004317) #34	ENSMMMG00000004415
Eurasian red squirrel	MODERN SPECIES	6	NIPSNAP3A (ENSSVLG00005023053) #11	OR13D1 (ENSSVLG00005023029) #13	ENSSVLG00005023004 #14	ENSSVLG00005022990 #15	ENSSVLG00005022984 #15	ENSSVLG00005022968 ##13	ENSSVLG00005022956 #16	ENSSVLG00005022940 #16	ENSSVLG00005022930 #17	ENSSVLG00005022901 #17	OR13F1 (ENSSVLG00005022886)	ENSSVLG00005022873	SMC2 (ENSSVLG00005022706) #21	ENSSVLG00005022668	ENSSVLG00005022639	GRIN3A (ENSSVLG00005022487) #22	RNF20 (ENSSVLG00005022444) #23	PGAP4 (ENSSVLG00005022426) #24	ENSSVLG00005022415	ALDOB (ENSSVLG00005022272) #25	ZNF189 (ENSSVLG00005022220) #26	ENSSVLG00005022189 #27	BAAT (ENSSVLG00005022141) #28	ENSSVLG00005022075 ##28	PLPPR1 (ENSSVLG00005022005) #30	ENSSVLG00005021949	CAVIN4 (ENSSVLG00005021929) #31	TMEFF1 (ENSSVLG00005021870) #32	TEX10 (ENSSVLG00005021757) #33	INVS (ENSSVLG00005021701) #34	ERP44 (ENSSVLG00005021657) #35