Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Glires	ANCESTRAL SPECIES	9	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1609																Grin3a (ENSNGAG00000024185) #22	Rnf20 (ENSNGAG00000015384) #23	Pgap4 (ENSNGAG00000005598) #24	Aldob (ENSNGAG00000005557) #25	Zfp189 (ENSNGAG00000023741) #26	Mrpl50 (ENSNGAG00000021876) #27	Baat (ENSNGAG00000020940) #28	ENSNGAG00000002603 #29	Plppr1 (ENSNGAG00000023835) #30	Cavin4 (ENSNGAG00000006831) #31	Tmeff1 (ENSNGAG00000023810) #32	Msantd3 (ENSNGAG00000023802) #33	Tex10 (ENSNGAG00000023893) #34	Invs (ENSNGAG00000019886) #35	Erp44 (ENSNGAG00000021663) #36	Stx17 (ENSNGAG00000005082) #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00940000165130	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36
Chinese hamster chok1gshd	MODERN SPECIES	111	Abca1 (ENSCGRG00001017941)	Nipsnap3b (ENSCGRG00001021994)	Nipsnap3a (ENSCGRG00001022581)	Or13d1 (ENSCGRG00001005236)	ENSCGRG00001004875	ENSCGRG00001018517	ENSCGRG00001007159	ENSCGRG00001008686	ENSCGRG00001008579	ENSCGRG00001008527	ENSCGRG00001010069	Or13f5 (ENSCGRG00001012146)	Toporsl (ENSCGRG00001011956)	Smc2 (ENSCGRG00001015546)	ENSCGRG00001018551	Grin3a (ENSCGRG00001020666) #22	Rnf20 (ENSCGRG00001016760) #23	Pgap4 (ENSCGRG00001004180) #24	ENSCGRG00001022613	Aldob (ENSCGRG00001018754) #25	Zfp189 (ENSCGRG00001022874) #26	Mrpl50 (ENSCGRG00001023970) #27	Baat (ENSCGRG00001024533) #28	ENSCGRG00001001248 #29	Plppr1 (ENSCGRG00001022554) #30	ENSCGRG00001009406	Cavin4 (ENSCGRG00001018281) #31	Tmeff1 (ENSCGRG00001021081) #32	Msantd3 (ENSCGRG00001023156) #33	Tex10 (ENSCGRG00001023462) #34	Invs (ENSCGRG00001024651) #35
Golden Hamster	MODERN SPECIES	703																Grin3a (ENSMAUG00000021268) #22	Ppp3r2 (ENSMAUG00000002415)	Rnf20 (ENSMAUG00000010429) #23	Pgap4 (ENSMAUG00000017886) #24	Aldob (ENSMAUG00000012988) #25	Zfp189 (ENSMAUG00000014595) #26	Mrpl50 (ENSMAUG00000002882) #27	Baat (ENSMAUG00000009479) #28	ENSMAUG00000013363 #29	Plppr1 (ENSMAUG00000010325) #30	Cavin4 (ENSMAUG00000017883) #31	Tmeff1 (ENSMAUG00000021231) #32	Tex10 (ENSMAUG00000016306) #34	Invs (ENSMAUG00000015926) #35	Erp44 (ENSMAUG00000001134) #36	ENSMAUG00000010249
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000029455	Fktn (ENSPEMG00000026889)	Fsd1l (ENSPEMG00000017531)	Slc44a1 (ENSPEMG00000009580)	Abca1 (ENSPEMG00000008711)	Nipsnap3b (ENSPEMG00000013598)	Nipsnap3a (ENSPEMG00000009266)	Or13d1 (ENSPEMG00000008885)	ENSPEMG00000016440	Or13c25 (ENSPEMG00000010413)	Or13c3 (ENSPEMG00000007908)	Or13f5 (ENSPEMG00000026506)	Smc2 (ENSPEMG00000011010)	ENSPEMG00000020258	Ppp3r2 (ENSPEMG00000002128)	Grin3a (ENSPEMG00000000322) #22	ENSPEMG00000026167	Pgap4 (ENSPEMG00000008340) #24	Aldob (ENSPEMG00000009090) #25	Zfp189 (ENSPEMG00000009744) #26	Mrpl50 (ENSPEMG00000027685) #27	Baat (ENSPEMG00000010646) #28	ENSPEMG00000011383 #29	Plppr1 (ENSPEMG00000012426) #30	Cavin4 (ENSPEMG00000013106) #31	ENSPEMG00000012932	Tmeff1 (ENSPEMG00000009717) #32	Msantd3 (ENSPEMG00000010737) #33	Tex10 (ENSPEMG00000011547) #34	Invs (ENSPEMG00000014137) #35	Erp44 (ENSPEMG00000016094) #36
Prairie vole	MODERN SPECIES	355	Tmem38b (ENSMOCG00000017340)	Tal2 (ENSMOCG00000003929)	Fktn (ENSMOCG00000022995)	Fsd1l (ENSMOCG00000022827)	Slc44a1 (ENSMOCG00000010191)	Abca1 (ENSMOCG00000012458)	ENSMOCG00000011792	Nipsnap3a (ENSMOCG00000018651)	Or13d1 (ENSMOCG00000011253)	ENSMOCG00000003067	Or13c3 (ENSMOCG00000000485)	Toporsl (ENSMOCG00000002980)	Smc2 (ENSMOCG00000010061)	ENSMOCG00000014727	Ppp3r2 (ENSMOCG00000015134)	Grin3a (ENSMOCG00000021661) #22	Rnf20 (ENSMOCG00000012644) #23	Pgap4 (ENSMOCG00000000519) #24	Aldob (ENSMOCG00000018833) #25	Zfp189 (ENSMOCG00000020015) #26	Mrpl50 (ENSMOCG00000016919) #27	Baat (ENSMOCG00000017335) #28	ENSMOCG00000006911 #29	Plppr1 (ENSMOCG00000021681) #30	Cavin4 (ENSMOCG00000020875) #31	Tmeff1 (ENSMOCG00000013064) #32	Msantd3 (ENSMOCG00000019148) #33	Tex10 (ENSMOCG00000013713) #34	Invs (ENSMOCG00000000650) #35	Erp44 (ENSMOCG00000008817) #36	Stx17 (ENSMOCG00000016881) #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Mus	ANCESTRAL SPECIES	3	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Ryukyu mouse	MODERN SPECIES	13	Tal2 (MGP_CAROLIEiJ_G0026031)	Fktn (MGP_CAROLIEiJ_G0026030)	Fsd1l (MGP_CAROLIEiJ_G0026029)	Slc44a1 (MGP_CAROLIEiJ_G0026028)	Abca1 (MGP_CAROLIEiJ_G0026027)	Nipsnap3b (MGP_CAROLIEiJ_G0026026)	Nipsnap3a (MGP_CAROLIEiJ_G0026025)	Or13d1 (MGP_CAROLIEiJ_G0026024)	Or13c25 (MGP_CAROLIEiJ_G0026023)	Or13c3 (MGP_CAROLIEiJ_G0026022)	Or13f5 (MGP_CAROLIEiJ_G0026021)	Toporsl (MGP_CAROLIEiJ_G0026020)	Smc2 (MGP_CAROLIEiJ_G0026019)	MGP_CAROLIEiJ_G0026018	Ppp3r2 (MGP_CAROLIEiJ_G0026017)	Grin3a (MGP_CAROLIEiJ_G0026016) #22	Rnf20 (MGP_CAROLIEiJ_G0026015) #23	Pgap4 (MGP_CAROLIEiJ_G0026014) #24	Aldob (MGP_CAROLIEiJ_G0026013) #25	Zfp189 (MGP_CAROLIEiJ_G0026012) #26	Mrpl50 (MGP_CAROLIEiJ_G0026011) #27	MGP_CAROLIEiJ_G0026010 #28	MGP_CAROLIEiJ_G0026009 #29	MGP_CAROLIEiJ_G0026008 #29	Plppr1 (MGP_CAROLIEiJ_G0026007) #30	Cavin4 (MGP_CAROLIEiJ_G0026006) #31	Tmeff1 (MGP_CAROLIEiJ_G0026005) #32	Msantd3 (MGP_CAROLIEiJ_G0026004) #33	Tex10 (MGP_CAROLIEiJ_G0026003) #34	Invs (MGP_CAROLIEiJ_G0026002) #35	Erp44 (MGP_CAROLIEiJ_G0026001) #36
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b.a #29	ENSGT01010000222336.a.a.b.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36
Mouse	MODERN SPECIES	13	Tal2 (ENSMUSG00000028417)	Fktn (ENSMUSG00000028414)	Fsd1l (ENSMUSG00000054752)	Slc44a1 (ENSMUSG00000028412)	Abca1 (ENSMUSG00000015243)	Nipsnap3b (ENSMUSG00000015247)	Nipsnap3a (ENSMUSG00000015242)	Or13d1 (ENSMUSG00000070983)	Or13c25 (ENSMUSG00000051593)	Or13c3 (ENSMUSG00000049648)	Or13f5 (ENSMUSG00000089717)	Toporsl (ENSMUSG00000028314)	Smc2 (ENSMUSG00000028312)	Cylc2 (ENSMUSG00000039555)	Ppp3r2 (ENSMUSG00000028310)	Grin3a (ENSMUSG00000039579) #22	Rnf20 (ENSMUSG00000028309) #23	Pgap4 (ENSMUSG00000039611) #24	Aldob (ENSMUSG00000028307) #25	Zfp189 (ENSMUSG00000039634) #26	Mrpl50 (ENSMUSG00000044018) #27	Baat (ENSMUSG00000039653) #28	Acnat1 (ENSMUSG00000070985) #29	Acnat2 (ENSMUSG00000060317) #29	Plppr1 (ENSMUSG00000063446) #30	Cavin4 (ENSMUSG00000028348) #31	Tmeff1 (ENSMUSG00000028347) #32	Msantd3 (ENSMUSG00000039693) #33	Tex10 (ENSMUSG00000028345) #34	Invs (ENSMUSG00000028344) #35	Erp44 (ENSMUSG00000028343) #36
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b.a #29	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37	ENSGT00950000183038.a.b.b.a
spretus	MODERN SPECIES	13	Tal2 (MGP_SPRETEiJ_G0026994)	Fktn (MGP_SPRETEiJ_G0026993)	Fsd1l (MGP_SPRETEiJ_G0026992)	Slc44a1 (MGP_SPRETEiJ_G0026991)	Abca1 (MGP_SPRETEiJ_G0026990)	Nipsnap3b (MGP_SPRETEiJ_G0026989)	Nipsnap3a (MGP_SPRETEiJ_G0026988)	Or13d1 (MGP_SPRETEiJ_G0026987)	Or13c25 (MGP_SPRETEiJ_G0026986)	Or13c3 (MGP_SPRETEiJ_G0026985)	Or13f5 (MGP_SPRETEiJ_G0026984)	Toporsl (MGP_SPRETEiJ_G0026983)	Smc2 (MGP_SPRETEiJ_G0026982)	MGP_SPRETEiJ_G0026981	Ppp3r2 (MGP_SPRETEiJ_G0026980)	Grin3a (MGP_SPRETEiJ_G0026979) #22	Rnf20 (MGP_SPRETEiJ_G0026978) #23	Pgap4 (MGP_SPRETEiJ_G0026977) #24	Aldob (MGP_SPRETEiJ_G0026976) #25	Zfp189 (MGP_SPRETEiJ_G0026975) #26	Mrpl50 (MGP_SPRETEiJ_G0026974) #27	Baat (MGP_SPRETEiJ_G0026973) #28	MGP_SPRETEiJ_G0026972 #29	MGP_SPRETEiJ_G0026971 #29	Cavin4 (MGP_SPRETEiJ_G0026969) #31	Tmeff1 (MGP_SPRETEiJ_G0026968) #32	Msantd3 (MGP_SPRETEiJ_G0026967) #33	Tex10 (MGP_SPRETEiJ_G0026966) #34	Invs (MGP_SPRETEiJ_G0026965) #35	Erp44 (MGP_SPRETEiJ_G0026964) #36	Stx17 (MGP_SPRETEiJ_G0026963) #37
Steppe mouse	MODERN SPECIES	3121															Ppp3r2 (ENSMSIG00000026790)	Grin3a (ENSMSIG00000026757) #22	Rnf20 (ENSMSIG00000026724) #23	Pgap4 (ENSMSIG00000026720) #24	Aldob (ENSMSIG00000026708) #25	Zfp189 (ENSMSIG00000026701) #26	Mrpl50 (ENSMSIG00000026695) #27	Baat (ENSMSIG00000026685) #28
Shrew mouse	MODERN SPECIES	19	Tal2 (MGP_PahariEiJ_G0028367)	Fktn (MGP_PahariEiJ_G0028366)	Fsd1l (MGP_PahariEiJ_G0028365)	Slc44a1 (MGP_PahariEiJ_G0028364)	Abca1 (MGP_PahariEiJ_G0028363)	Nipsnap3b (MGP_PahariEiJ_G0028362)	Nipsnap3a (MGP_PahariEiJ_G0028361)	Or13d1 (MGP_PahariEiJ_G0028360)	Or13c25 (MGP_PahariEiJ_G0028359)	Or13c3 (MGP_PahariEiJ_G0028358)	Or13f5 (MGP_PahariEiJ_G0028357)	Toporsl (MGP_PahariEiJ_G0028356)	Smc2 (MGP_PahariEiJ_G0028355)	MGP_PahariEiJ_G0028354	Ppp3r2 (MGP_PahariEiJ_G0028353)	Grin3a (MGP_PahariEiJ_G0028352) #22	Rnf20 (MGP_PahariEiJ_G0028351) #23	Pgap4 (MGP_PahariEiJ_G0028350) #24	Aldob (MGP_PahariEiJ_G0028349) #25	Zfp189 (MGP_PahariEiJ_G0028348) #26	Mrpl50 (MGP_PahariEiJ_G0028347) #27	Baat (MGP_PahariEiJ_G0028346) #28	MGP_PahariEiJ_G0028345 #29	MGP_PahariEiJ_G0028344 #29	Plppr1 (MGP_PahariEiJ_G0028343) #30	Cavin4 (MGP_PahariEiJ_G0028342) #31	Tmeff1 (MGP_PahariEiJ_G0028341) #32	Msantd3 (MGP_PahariEiJ_G0028340) #33	Tex10 (MGP_PahariEiJ_G0028339) #34	Invs (MGP_PahariEiJ_G0028338) #35	Erp44 (MGP_PahariEiJ_G0028337) #36
Rat	MODERN SPECIES	15	Or13c25 (ENSRNOG00000052071)	Or13c3 (ENSRNOG00000070860)	LOC120103150 (ENSRNOG00000067730)	Or13c3f (ENSRNOG00000063372)	Or13c3b (ENSRNOG00000071075)	Or13c3g (ENSRNOG00000068215)	Or13c3c (ENSRNOG00000069301)	Or13c3 (ENSRNOG00000064661)	LOC500460 (ENSRNOG00000005666)	Or13f5 (ENSRNOG00000049788)	Toporsl (ENSRNOG00000005721)	Smc2 (ENSRNOG00000022325)	Rps6 (ENSRNOG00000049025)	Cylc2 (ENSRNOG00000022406)	Ppp3r2 (ENSRNOG00000065066)	Grin3a (ENSRNOG00000005723) #22	Rnf20 (ENSRNOG00000006087) #23	Pgap4 (ENSRNOG00000006800) #24	Aldob (ENSRNOG00000006807) #25	Zfp189 (ENSRNOG00000006972) #26	ENSRNOG00000068816 #27	Baat (ENSRNOG00000007395) #28	Acnat1 (ENSRNOG00000065119) #29	Acnat1 (ENSRNOG00000056688) #29	Acnat2 (ENSRNOG00000051912) #29	Plppr1 (ENSRNOG00000007575) #30	Cavin4 (ENSRNOG00000008027) #31	Tmeff1 (ENSRNOG00000008034) #32	Msantd3 (ENSRNOG00000008159) #33	Tex10 (ENSRNOG00000008618) #34	Invs (ENSRNOG00000008632) #35
Lesser Egyptian jerboa	MODERN SPECIES	61	Zfp462 (ENSJJAG00000017478)	Tmem38b (ENSJJAG00000017610)	ENSJJAG00000012167	Tal2 (ENSJJAG00000007872)	Fktn (ENSJJAG00000018854)	Fsd1l (ENSJJAG00000020333)	Slc44a1 (ENSJJAG00000012770)	ENSJJAG00000007650	Abca1 (ENSJJAG00000021124)	ENSJJAG00000011734	ENSJJAG00000014078	ENSJJAG00000014352	Smc2 (ENSJJAG00000024156)	ENSJJAG00000009857	ENSJJAG00000023304	Grin3a (ENSJJAG00000023914) #22	Rnf20 (ENSJJAG00000022147) #23	Aldob (ENSJJAG00000017193) #25	Zfp189 (ENSJJAG00000017677) #26	Mrpl50 (ENSJJAG00000015402) #27	Baat (ENSJJAG00000015081) #28	ENSJJAG00000022423 #29	ENSJJAG00000023201	Plppr1 (ENSJJAG00000014625) #30	ENSJJAG00000018538	Cavin4 (ENSJJAG00000013719) #31	ENSJJAG00000011421	ENSJJAG00000016219 #32	Msantd3 (ENSJJAG00000019733) #33	Tex10 (ENSJJAG00000017725) #34	Invs (ENSJJAG00000020388) #35
Kangaroo rat	MODERN SPECIES	386	Actl7a (ENSDORG00000008612)	Actl7b (ENSDORG00000008610)	ENSDORG00000026534	Rad23b (ENSDORG00000006946)	Zfp462 (ENSDORG00000025368)	Tmem38b (ENSDORG00000011779)	Tal2 (ENSDORG00000012882)	Fktn (ENSDORG00000012880)	Fsd1l (ENSDORG00000012878)	Slc44a1 (ENSDORG00000009386)	Abca1 (ENSDORG00000000957)	ENSDORG00000000955	ENSDORG00000004991	Or13c3 (ENSDORG00000008584)	Smc2 (ENSDORG00000008581)	Grin3a (ENSDORG00000011973) #22	Rnf20 (ENSDORG00000011964) #23	Pgap4 (ENSDORG00000029820) #24	Aldob (ENSDORG00000012832) #25	Zfp189 (ENSDORG00000012830) #26	Mrpl50 (ENSDORG00000012829) #27	Baat (ENSDORG00000012828) #28	Plppr1 (ENSDORG00000012237) #30	Cavin4 (ENSDORG00000015263) #31	Tmeff1 (ENSDORG00000015260) #32	Msantd3 (ENSDORG00000029544) #33	Tex10 (ENSDORG00000016151) #34	Invs (ENSDORG00000016150) #35	Erp44 (ENSDORG00000016149) #36	ENSDORG00000028611	Nr4a3 (ENSDORG00000011146)
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.c	ENSGT00950000183018.b.k.a.d	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37	ENSGT00950000183038.a.b.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.c	ENSGT00950000183018.b.k.a.d	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868	ENSGT00550000074857	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37	ENSGT00950000183038.a.b.b.a
Guinea pig	MODERN SPECIES	27	FKTN (ENSCPOG00000036881)	FSD1L (ENSCPOG00000007088)	SLC44A1 (ENSCPOG00000015289)	ABCA1 (ENSCPOG00000009387)	ENSCPOG00000038625	ENSCPOG00000009373	OR13D1 (ENSCPOG00000005936)	ENSCPOG00000019951	ENSCPOG00000039329	ENSCPOG00000037364	ENSCPOG00000031883	ENSCPOG00000013656	ENSCPOG00000007377	OR13C4 (ENSCPOG00000031054)	SMC2 (ENSCPOG00000008189)	GRIN3A (ENSCPOG00000006667) #22	RNF20 (ENSCPOG00000012903) #23	PGAP4 (ENSCPOG00000015138) #24	ALDOB (ENSCPOG00000012385) #25	ZNF189 (ENSCPOG00000015555) #26	MRPL50 (ENSCPOG00000034033) #27	BAAT (ENSCPOG00000038785) #28	ENSCPOG00000031580	PLPPR1 (ENSCPOG00000006791) #30	CAVIN4 (ENSCPOG00000005674) #31	TMEFF1 (ENSCPOG00000005669) #32	TEX10 (ENSCPOG00000008514) #34	INVS (ENSCPOG00000008363) #35	ERP44 (ENSCPOG00000040125) #36	STX17 (ENSCPOG00000037367) #37	NR4A3 (ENSCPOG00000008346)
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000162158	ENSGT00940000162582	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.d	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT00940000162868	ENSGT00550000074857	ENSGT00940000165130	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37	ENSGT00950000183038.a.b.b.a
Long-tailed chinchilla	MODERN SPECIES	126	RAD23B (ENSCLAG00000010897)	ENSCLAG00000011424	ZNF462 (ENSCLAG00000016925)	TMEM38B (ENSCLAG00000014738)	TAL2 (ENSCLAG00000012271)	FKTN (ENSCLAG00000010039)	FSD1L (ENSCLAG00000010824)	SLC44A1 (ENSCLAG00000015036)	ABCA1 (ENSCLAG00000015148)	ENSCLAG00000012516	ENSCLAG00000013135	OR13D1 (ENSCLAG00000017813)	ENSCLAG00000018070	OR13F1 (ENSCLAG00000017722)	SMC2 (ENSCLAG00000010498)	GRIN3A (ENSCLAG00000009983) #22	ENSCLAG00000012103	RNF20 (ENSCLAG00000013001) #23	PGAP4 (ENSCLAG00000010478) #24	ALDOB (ENSCLAG00000013299) #25	ZNF189 (ENSCLAG00000013678) #26	MRPL50 (ENSCLAG00000010221) #27	BAAT (ENSCLAG00000013825) #28	PLPPR1 (ENSCLAG00000014192) #30	CAVIN4 (ENSCLAG00000014331) #31	TMEFF1 (ENSCLAG00000010573) #32	TEX10 (ENSCLAG00000011567) #34	INVS (ENSCLAG00000012495) #35	ERP44 (ENSCLAG00000014199) #36	STX17 (ENSCLAG00000013623) #37	NR4A3 (ENSCLAG00000011240)
Degu	MODERN SPECIES	135	SLC44A1 (ENSODEG00000004590)	ENSODEG00000004309	ABCA1 (ENSODEG00000005925)	ENSODEG00000004959	ENSODEG00000004904	ENSODEG00000019193	ENSODEG00000004859	OR13C4 (ENSODEG00000004667)	ENSODEG00000004581	ENSODEG00000004541	SMC2 (ENSODEG00000004258)	ENSODEG00000019030	ENSODEG00000004824	ENSODEG00000004804	PPP3R2 (ENSODEG00000004786)	GRIN3A (ENSODEG00000004363) #22	ENSODEG00000004153 #23	ENSODEG00000019053 #24	ENSODEG00000004110	ALDOB (ENSODEG00000004052) #25	ZNF189 (ENSODEG00000005286) #26	MRPL50 (ENSODEG00000005275) #27	BAAT (ENSODEG00000005191) #28	PLPPR1 (ENSODEG00000005164) #30
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000034042	OR13D1 (ENSHGLG00000020669)	ENSHGLG00000004704	ENSHGLG00000049175	OR13C3 (ENSHGLG00000020079)	OR13C4 (ENSHGLG00000047893)	OR13F1 (ENSHGLG00000005682)	ENSHGLG00000032079	ENSHGLG00000049812	SMC2 (ENSHGLG00000007747)	ENSHGLG00000049087	ENSHGLG00000012037	ENSHGLG00000041020	ENSHGLG00000008760	ENSHGLG00000032676	GRIN3A (ENSHGLG00000014346) #22	RNF20 (ENSHGLG00000016128) #23	PGAP4 (ENSHGLG00000008776) #24	ALDOB (ENSHGLG00000010812) #25	ZNF189 (ENSHGLG00000011643) #26	MRPL50 (ENSHGLG00000004483) #27	ENSHGLG00000042541	BAAT (ENSHGLG00000006846) #28	ENSHGLG00000037623	PLPPR1 (ENSHGLG00000008477) #30	MURC (ENSHGLG00000035685) #31	TMEFF1 (ENSHGLG00000003019) #32	MSANTD3 (ENSHGLG00000004426) #33	TEX10 (ENSHGLG00000004561) #34	INVS (ENSHGLG00000005116) #35	ENSHGLG00000032583
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.f	ENSGT00950000183018.b.k.a.e	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.f	ENSGT00950000183018.b.k.a.e	ENSGT01040000240406.A.b.a.b.s.a	ENSGT01040000240406.A.b.a.b.t.a	ENSGT01040000240406.A.b.a.b.t.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00940000154658.b	ENSGT00950000183018.b.k.b	ENSGT01040000240406.A.b.a.b.s.b	ENSGT01040000240406.A.b.a.b.s.a	ENSGT01040000240406.A.b.a.b.t.a	ENSGT01040000240406.A.b.a.b.t.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00390000007901 #33	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37
Squirrel	MODERN SPECIES	124															ENSSTOG00000004766	GRIN3A (ENSSTOG00000002475) #22	RNF20 (ENSSTOG00000027656) #23	PGAP4 (ENSSTOG00000007055) #24	ALDOB (ENSSTOG00000007034) #25	ZNF189 (ENSSTOG00000024337) #26	MRPL50 (ENSSTOG00000026770) #27	BAAT (ENSSTOG00000020683) #28	ENSSTOG00000025846 #29	PLPPR1 (ENSSTOG00000001576) #30	CAVIN4 (ENSSTOG00000015661) #31	TMEFF1 (ENSSTOG00000015655) #32	MSANTD3 (ENSSTOG00000026763) #33	TEX10 (ENSSTOG00000010151) #34	INVS (ENSSTOG00000010139) #35	ERP44 (ENSSTOG00000010127) #36	STX17 (ENSSTOG00000010118) #37
Arctic ground squirrel	MODERN SPECIES	19	SLC44A1 (ENSUPAG00010014647)	ABCA1 (ENSUPAG00010014737)	NIPSNAP3B (ENSUPAG00010014783)	ENSUPAG00010014870	ENSUPAG00010014879	ENSUPAG00010014882	ENSUPAG00010014884	ENSUPAG00010014889	ENSUPAG00010014897	ENSUPAG00010014902	OR13C3 (ENSUPAG00010014917)	OR13F1 (ENSUPAG00010014923)	ENSUPAG00010014932	SMC2 (ENSUPAG00010014939)	ENSUPAG00010015011	GRIN3A (ENSUPAG00010015019) #22	RNF20 (ENSUPAG00010015055) #23	PGAP4 (ENSUPAG00010015128) #24	ALDOB (ENSUPAG00010015132) #25	ZNF189 (ENSUPAG00010015145) #26	MRPL50 (ENSUPAG00010015153) #27	BAAT (ENSUPAG00010015156) #28	ENSUPAG00010015161	PLPPR1 (ENSUPAG00010015166) #30	CAVIN4 (ENSUPAG00010015173) #31	TMEFF1 (ENSUPAG00010015180) #32	TEX10 (ENSUPAG00010015228) #34	INVS (ENSUPAG00010015254) #35	ERP44 (ENSUPAG00010015433) #36	STX17 (ENSUPAG00010015454) #37	NR4A3 (ENSUPAG00010015475)
Alpin marmot	MODERN SPECIES	30	ENSMMMG00000003848	ENSMMMG00000003883	ENSMMMG00000003893	ENSMMMG00000003902	ENSMMMG00000003908	ENSMMMG00000003910	ENSMMMG00000003917	ENSMMMG00000003927	ENSMMMG00000003934	ENSMMMG00000003935	OR13C8 (ENSMMMG00000003941)	OR13C3 (ENSMMMG00000003944)	OR13F1 (ENSMMMG00000003956)	ENSMMMG00000003962	SMC2 (ENSMMMG00000003971)	GRIN3A (ENSMMMG00000004037) #22	ENSMMMG00000004086	RNF20 (ENSMMMG00000004104) #23	PGAP4 (ENSMMMG00000004146) #24	ALDOB (ENSMMMG00000004150) #25	ZNF189 (ENSMMMG00000004162) #26	MRPL50 (ENSMMMG00000004177) #27	BAAT (ENSMMMG00000004181) #28	ENSMMMG00000004195 #29	PLPPR1 (ENSMMMG00000004212) #30	CAVIN4 (ENSMMMG00000004236) #31	ENSMMMG00000004244 #32	MSANTD3 (ENSMMMG00000004255) #33	TEX10 (ENSMMMG00000004278) #34	INVS (ENSMMMG00000004317) #35	ENSMMMG00000004415
Eurasian red squirrel	MODERN SPECIES	6	NIPSNAP3A (ENSSVLG00005023053)	OR13D1 (ENSSVLG00005023029)	ENSSVLG00005023004	ENSSVLG00005022990	ENSSVLG00005022984	ENSSVLG00005022968	ENSSVLG00005022956	ENSSVLG00005022940	ENSSVLG00005022930	ENSSVLG00005022901	OR13F1 (ENSSVLG00005022886)	ENSSVLG00005022873	SMC2 (ENSSVLG00005022706)	ENSSVLG00005022668	ENSSVLG00005022639	GRIN3A (ENSSVLG00005022487) #22	RNF20 (ENSSVLG00005022444) #23	PGAP4 (ENSSVLG00005022426) #24	ENSSVLG00005022415	ALDOB (ENSSVLG00005022272) #25	ZNF189 (ENSSVLG00005022220) #26	ENSSVLG00005022189 #27	BAAT (ENSSVLG00005022141) #28	ENSSVLG00005022075 #29	PLPPR1 (ENSSVLG00005022005) #30	ENSSVLG00005021949	CAVIN4 (ENSSVLG00005021929) #31	TMEFF1 (ENSSVLG00005021870) #32	TEX10 (ENSSVLG00005021757) #34	INVS (ENSSVLG00005021701) #35	ERP44 (ENSSVLG00005021657) #36
Lagomorpha	ANCESTRAL SPECIES	23													ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b #29	ENSGT00940000158875 #30	ENSGT00950000182910.a.b #31	ENSGT00940000160714 #32	ENSGT00950000182992.a.a #34	ENSGT00940000157688 #35	ENSGT00930000151031 #36	ENSGT01000000214440.A.b #37	ENSGT00950000183038.a.b.b.a
Rabbit	MODERN SPECIES		ABCA1 (ENSOCUG00000009279)	OR13D1 (ENSOCUG00000021309)	ENSOCUG00000036047	OR13C8 (ENSOCUG00000016379)	ENSOCUG00000016376	OR13F1 (ENSOCUG00000006906)	ENSOCUG00000026615	ENSOCUG00000030738	SMC2 (ENSOCUG00000005655)	ENSOCUG00000012947	ENSOCUG00000029631	ENSOCUG00000030222	ENSOCUG00000009135	ENSOCUG00000035956	ENSOCUG00000033013	GRIN3A (ENSOCUG00000016738) #22	RNF20 (ENSOCUG00000012019) #23	ALDOB (ENSOCUG00000014944) #25	ZNF189 (ENSOCUG00000014941) #26	MRPL50 (ENSOCUG00000006340) #27	ENSOCUG00000039388 #28	ENSOCUG00000009723 #28	ENSOCUG00000038477	ENSOCUG00000026800 #29	PLPPR1 (ENSOCUG00000013668) #30	ENSOCUG00000022518	ENSOCUG00000030214	ENSOCUG00000025109	CAVIN4 (ENSOCUG00000022294) #31	ENSOCUG00000006373	TEX10 (ENSOCUG00000004242) #34
Pika	MODERN SPECIES	1447															ENSOPRG00000015639	GRIN3A (ENSOPRG00000015609) #22	RNF20 (ENSOPRG00000015586) #23	PGAP4 (ENSOPRG00000015583) #24	ALDOB (ENSOPRG00000015572) #25	ZNF189 (ENSOPRG00000015563) #26	ENSOPRG00000015557 #27
Tree shrew	MODERN SPECIES	2733																ENSTBEG00000004285 #22	ENSTBEG00000004018 #23