Mus	ANCESTRAL SPECIES	3	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130 #21	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b ##28	ENSGT00940000158875	ENSGT00950000182910.a.b	ENSGT00940000160714	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130 #21	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b ##28	ENSGT00940000158875	ENSGT00950000182910.a.b	ENSGT00940000160714	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130 #21	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b.a ##28	ENSGT01010000222336.a.a.b.b.b ##28	ENSGT00940000158875	ENSGT00950000182910.a.b	ENSGT00940000160714	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a.a	ENSGT00950000183018.b.k.a.b	ENSGT01040000240406.A.b.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT00940000162868	ENSGT00530000064170.f	ENSGT00550000074857	ENSGT00730000111075.a	ENSGT00940000165130 #21	ENSGT00940000158571 #22	ENSGT00390000002866.b #23	ENSGT00500000045018 #24	ENSGT00950000182987.c.b #25	ENSGT00940000161823 #26	ENSGT00390000004279 #27	ENSGT01010000222336.a.a.b.a #28	ENSGT01010000222336.a.a.b.b.a ##28	ENSGT00950000182910.a.b	ENSGT00940000160714	ENSGT00390000007901	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a
Steppe mouse	MODERN SPECIES	3121															Ppp3r2 (ENSMSIG00000026790) #21	Grin3a (ENSMSIG00000026757) #22	Rnf20 (ENSMSIG00000026724) #23	Pgap4 (ENSMSIG00000026720) #24	Aldob (ENSMSIG00000026708) #25	Zfp189 (ENSMSIG00000026701) #26	Mrpl50 (ENSMSIG00000026695) #27	Baat (ENSMSIG00000026685) #28
spretus	MODERN SPECIES	13	Tal2 (MGP_SPRETEiJ_G0026994)	Fktn (MGP_SPRETEiJ_G0026993)	Fsd1l (MGP_SPRETEiJ_G0026992)	Slc44a1 (MGP_SPRETEiJ_G0026991)	Abca1 (MGP_SPRETEiJ_G0026990)	Nipsnap3b (MGP_SPRETEiJ_G0026989)	Nipsnap3a (MGP_SPRETEiJ_G0026988)	Or13d1 (MGP_SPRETEiJ_G0026987)	Or13c25 (MGP_SPRETEiJ_G0026986)	Or13c3 (MGP_SPRETEiJ_G0026985)	Or13f5 (MGP_SPRETEiJ_G0026984)	Toporsl (MGP_SPRETEiJ_G0026983)	Smc2 (MGP_SPRETEiJ_G0026982)	MGP_SPRETEiJ_G0026981	Ppp3r2 (MGP_SPRETEiJ_G0026980) #21	Grin3a (MGP_SPRETEiJ_G0026979) #22	Rnf20 (MGP_SPRETEiJ_G0026978) #23	Pgap4 (MGP_SPRETEiJ_G0026977) #24	Aldob (MGP_SPRETEiJ_G0026976) #25	Zfp189 (MGP_SPRETEiJ_G0026975) #26	Mrpl50 (MGP_SPRETEiJ_G0026974) #27	Baat (MGP_SPRETEiJ_G0026973) #28	MGP_SPRETEiJ_G0026972 ##28	MGP_SPRETEiJ_G0026971 ##28	Cavin4 (MGP_SPRETEiJ_G0026969)	Tmeff1 (MGP_SPRETEiJ_G0026968)	Msantd3 (MGP_SPRETEiJ_G0026967)	Tex10 (MGP_SPRETEiJ_G0026966)	Invs (MGP_SPRETEiJ_G0026965)	Erp44 (MGP_SPRETEiJ_G0026964)	Stx17 (MGP_SPRETEiJ_G0026963)
Mouse	MODERN SPECIES	13	Tal2 (ENSMUSG00000028417)	Fktn (ENSMUSG00000028414)	Fsd1l (ENSMUSG00000054752)	Slc44a1 (ENSMUSG00000028412)	Abca1 (ENSMUSG00000015243)	Nipsnap3b (ENSMUSG00000015247)	Nipsnap3a (ENSMUSG00000015242)	Or13d1 (ENSMUSG00000070983)	Or13c25 (ENSMUSG00000051593)	Or13c3 (ENSMUSG00000049648)	Or13f5 (ENSMUSG00000089717)	Toporsl (ENSMUSG00000028314)	Smc2 (ENSMUSG00000028312)	Cylc2 (ENSMUSG00000039555)	Ppp3r2 (ENSMUSG00000028310) #21	Grin3a (ENSMUSG00000039579) #22	Rnf20 (ENSMUSG00000028309) #23	Pgap4 (ENSMUSG00000039611) #24	Aldob (ENSMUSG00000028307) #25	Zfp189 (ENSMUSG00000039634) #26	Mrpl50 (ENSMUSG00000044018) #27	Baat (ENSMUSG00000039653) #28	Acnat1 (ENSMUSG00000070985) ##28	Acnat2 (ENSMUSG00000060317) ##28	Plppr1 (ENSMUSG00000063446)	Cavin4 (ENSMUSG00000028348)	Tmeff1 (ENSMUSG00000028347)	Msantd3 (ENSMUSG00000039693)	Tex10 (ENSMUSG00000028345)	Invs (ENSMUSG00000028344)	Erp44 (ENSMUSG00000028343)
Ryukyu mouse	MODERN SPECIES	13	Tal2 (MGP_CAROLIEiJ_G0026031)	Fktn (MGP_CAROLIEiJ_G0026030)	Fsd1l (MGP_CAROLIEiJ_G0026029)	Slc44a1 (MGP_CAROLIEiJ_G0026028)	Abca1 (MGP_CAROLIEiJ_G0026027)	Nipsnap3b (MGP_CAROLIEiJ_G0026026)	Nipsnap3a (MGP_CAROLIEiJ_G0026025)	Or13d1 (MGP_CAROLIEiJ_G0026024)	Or13c25 (MGP_CAROLIEiJ_G0026023)	Or13c3 (MGP_CAROLIEiJ_G0026022)	Or13f5 (MGP_CAROLIEiJ_G0026021)	Toporsl (MGP_CAROLIEiJ_G0026020)	Smc2 (MGP_CAROLIEiJ_G0026019)	MGP_CAROLIEiJ_G0026018	Ppp3r2 (MGP_CAROLIEiJ_G0026017) #21	Grin3a (MGP_CAROLIEiJ_G0026016) #22	Rnf20 (MGP_CAROLIEiJ_G0026015) #23	Pgap4 (MGP_CAROLIEiJ_G0026014) #24	Aldob (MGP_CAROLIEiJ_G0026013) #25	Zfp189 (MGP_CAROLIEiJ_G0026012) #26	Mrpl50 (MGP_CAROLIEiJ_G0026011) #27	MGP_CAROLIEiJ_G0026010 #28	MGP_CAROLIEiJ_G0026009 ##28	MGP_CAROLIEiJ_G0026008 ##28	Plppr1 (MGP_CAROLIEiJ_G0026007)	Cavin4 (MGP_CAROLIEiJ_G0026006)	Tmeff1 (MGP_CAROLIEiJ_G0026005)	Msantd3 (MGP_CAROLIEiJ_G0026004)	Tex10 (MGP_CAROLIEiJ_G0026003)	Invs (MGP_CAROLIEiJ_G0026002)	Erp44 (MGP_CAROLIEiJ_G0026001)
Shrew mouse	MODERN SPECIES	19	Tal2 (MGP_PahariEiJ_G0028367)	Fktn (MGP_PahariEiJ_G0028366)	Fsd1l (MGP_PahariEiJ_G0028365)	Slc44a1 (MGP_PahariEiJ_G0028364)	Abca1 (MGP_PahariEiJ_G0028363)	Nipsnap3b (MGP_PahariEiJ_G0028362)	Nipsnap3a (MGP_PahariEiJ_G0028361)	Or13d1 (MGP_PahariEiJ_G0028360)	Or13c25 (MGP_PahariEiJ_G0028359)	Or13c3 (MGP_PahariEiJ_G0028358)	Or13f5 (MGP_PahariEiJ_G0028357)	Toporsl (MGP_PahariEiJ_G0028356)	Smc2 (MGP_PahariEiJ_G0028355)	MGP_PahariEiJ_G0028354	Ppp3r2 (MGP_PahariEiJ_G0028353) #21	Grin3a (MGP_PahariEiJ_G0028352) #22	Rnf20 (MGP_PahariEiJ_G0028351) #23	Pgap4 (MGP_PahariEiJ_G0028350) #24	Aldob (MGP_PahariEiJ_G0028349) #25	Zfp189 (MGP_PahariEiJ_G0028348) #26	Mrpl50 (MGP_PahariEiJ_G0028347) #27	Baat (MGP_PahariEiJ_G0028346) #28	MGP_PahariEiJ_G0028345 ##28	MGP_PahariEiJ_G0028344 ##28	Plppr1 (MGP_PahariEiJ_G0028343)	Cavin4 (MGP_PahariEiJ_G0028342)	Tmeff1 (MGP_PahariEiJ_G0028341)	Msantd3 (MGP_PahariEiJ_G0028340)	Tex10 (MGP_PahariEiJ_G0028339)	Invs (MGP_PahariEiJ_G0028338)	Erp44 (MGP_PahariEiJ_G0028337)