Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a #15	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a #15	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26	ENSGT00940000162684 #27	ENSGT00940000162370 #28	ENSGT00940000163522.A	ENSGT00940000154265	ENSGT00940000156840.b #29	ENSGT00940000155827	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Guinea pig	MODERN SPECIES	2	DIPK1A (ENSCPOG00000000700) #7	ENSCPOG00000032453 #8	EVI5 (ENSCPOG00000006917) #9	GFI1 (ENSCPOG00000011727) #10	RPAP2 (ENSCPOG00000007163) #11	GLMN (ENSCPOG00000007152) #12	C1orf146 (ENSCPOG00000007147) #13	BTBD8 (ENSCPOG00000008296) #14	ENSCPOG00000012159 #15	EPHX4 (ENSCPOG00000001758) #16	ENSCPOG00000003841 #17	TGFBR3 (ENSCPOG00000007217) #18	CDC7 (ENSCPOG00000012756) #19	HFM1 (ENSCPOG00000007421) #20	ZNF644 (ENSCPOG00000035010) #21	BARHL2 (ENSCPOG00000019619) #22	ZNF326 (ENSCPOG00000007332) #23	LRRC8D (ENSCPOG00000008295) #24	LRRC8C (ENSCPOG00000033092) #25	LRRC8B (ENSCPOG00000006377) #26	ENSCPOG00000002143 #27	ENSCPOG00000036175 #28	GBP1 (ENSCPOG00000015020) #29	ENSCPOG00000039361 #30	ENSCPOG00000040155 #31	S100A9 (ENSCPOG00000001685) #32	PGLYRP3 (ENSCPOG00000001678) #33	ENSCPOG00000035053 #34	ENSCPOG00000019349 #35	ENSCPOG00000038583 #36	ENSCPOG00000035710 #37
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a #15	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26	ENSGT00940000162684 #27	ENSGT00940000162370 #28	ENSGT00940000163522.A	ENSGT00940000154265	ENSGT00940000156840.b #29	ENSGT00940000155827	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Long-tailed chinchilla	MODERN SPECIES	130	DIPK1A (ENSCLAG00000008376) #7	ENSCLAG00000008425 #8	EVI5 (ENSCLAG00000008558) #9	GFI1 (ENSCLAG00000005915) #10	RPAP2 (ENSCLAG00000006291) #11	GLMN (ENSCLAG00000006922) #12	C1orf146 (ENSCLAG00000008485) #13	BTBD8 (ENSCLAG00000005766) #14	ENSCLAG00000006057	EPHX4 (ENSCLAG00000006155) #16	BRDT (ENSCLAG00000006404) #17	TGFBR3 (ENSCLAG00000007233) #18	CDC7 (ENSCLAG00000007469) #19	HFM1 (ENSCLAG00000005173) #20	ZNF644 (ENSCLAG00000006797) #21	BARHL2 (ENSCLAG00000004382) #22	ZNF326 (ENSCLAG00000004446) #23	LRRC8D (ENSCLAG00000017652) #24	LRRC8C (ENSCLAG00000004887) #25	LRRC8B (ENSCLAG00000004998) #26	ENSCLAG00000005124	GBP5 (ENSCLAG00000004574) #27	ENSCLAG00000004762 #28	ENSCLAG00000006815	ENSCLAG00000007012	ENSCLAG00000007095 #29	ENSCLAG00000007669	ENSCLAG00000009272 #29	KYAT3 (ENSCLAG00000009697)	ENSCLAG00000009967	GTF2B (ENSCLAG00000003857)
Degu	MODERN SPECIES	115	BTBD8 (ENSODEG00000006488) #14	ENSODEG00000007844 #15	ENSODEG00000005277	EPHX4 (ENSODEG00000005661) #16	BRDT (ENSODEG00000006335) #17	ENSODEG00000005197	ENSODEG00000019153	TGFBR3 (ENSODEG00000005656) #18	CDC7 (ENSODEG00000007352) #19	ENSODEG00000006243 #20	ENSODEG00000007491	ENSODEG00000007680	ZNF644 (ENSODEG00000007732) #21	ENSODEG00000019117	ENSODEG00000005537	BARHL2 (ENSODEG00000006385) #22	ENSODEG00000006466	ENSODEG00000006676	ENSODEG00000005953 #23	LRRC8D (ENSODEG00000006005) #24	ENSODEG00000005688	LRRC8C (ENSODEG00000006193) #25	LRRC8B (ENSODEG00000006259) #26	ENSODEG00000006443	ENSODEG00000005271 #29	ENSODEG00000005949	ENSODEG00000005251	ENSODEG00000005694	GBP5 (ENSODEG00000006465) #27
Naked mole-rat female	MODERN SPECIES	10	RPAP2 (ENSHGLG00000009983) #11	ENSHGLG00000011940 #12	ENSHGLG00000012510 #13	ENSHGLG00000012851	BTBD8 (ENSHGLG00000008571) #14	ENSHGLG00000046149	ENSHGLG00000033060	ENSHGLG00000010230 #16	BRDT (ENSHGLG00000004317) #17	ENSHGLG00000046123	ENSHGLG00000004997 #18	CDC7 (ENSHGLG00000046565) #19	HFM1 (ENSHGLG00000007780) #20	ZNF644 (ENSHGLG00000008786) #21	ENSHGLG00000041803	ENSHGLG00000009126 #22	ENSHGLG00000032341	ENSHGLG00000040937	ZNF326 (ENSHGLG00000004782) #23	ENSHGLG00000033474	ENSHGLG00000036797 #25	ENSHGLG00000007352 #26	ENSHGLG00000031997	ENSHGLG00000004912 #27	ENSHGLG00000009330	ENSHGLG00000007998 #27	ENSHGLG00000005453 #28	ENSHGLG00000006893	GBP1 (ENSHGLG00000008509) #29	CCBL2 (ENSHGLG00000004456)	GTF2B (ENSHGLG00000045614)