Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000183210.d.a.c.a.a.b.w.a.b	ENSGT00940000153846.a.a	ENSGT00940000156166.a	ENSGT00390000017965	ENSGT00390000018446	ENSGT00390000008285	ENSGT00940000154382.a.b #7	ENSGT00950000182892.a.b.a.b.a #8	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #10	ENSGT00940000154549.a #11	ENSGT00530000063861.b.b #14	ENSGT00550000075011 #15	ENSGT00550000074822 #16	ENSGT00940000158258 #19	ENSGT00940000158611 #22	ENSGT00530000063777.b #25	ENSGT00940000154043.B #26	ENSGT00940000159250 #28	ENSGT00940000160703 #29	ENSGT00940000162684 #35	ENSGT00940000162370	ENSGT00940000163522.A	ENSGT00940000154265 #34	ENSGT00940000156840.b #31	ENSGT00940000155827	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000183210.d.a.c.a.a.b.w.a.b	ENSGT00940000153846.a.a	ENSGT00940000156166.a	ENSGT00390000017965	ENSGT00390000018446	ENSGT00390000008285	ENSGT00940000154382.a.b #7	ENSGT00950000182892.a.b.a.b.a #8	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #10	ENSGT00940000154549.a #11	ENSGT00530000063861.b.b #14	ENSGT00550000075011 #15	ENSGT00550000074822 #16	ENSGT00940000158258 #19	ENSGT00940000158611 #22	ENSGT00530000063777.b #25	ENSGT00940000154043.B #26	ENSGT00940000159250 #28	ENSGT00940000160703 #29	ENSGT00940000162684 #35	ENSGT00940000162370	ENSGT00940000163522.A	ENSGT00940000154265 #34	ENSGT00940000156840.b #31	ENSGT00940000155827	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Degu	MODERN SPECIES	115	BTBD8 (ENSODEG00000006488) #7	ENSODEG00000007844 #8	ENSODEG00000005277 #9	EPHX4 (ENSODEG00000005661) #10	BRDT (ENSODEG00000006335) #11	ENSODEG00000005197 #12	ENSODEG00000019153 #13	TGFBR3 (ENSODEG00000005656) #14	CDC7 (ENSODEG00000007352) #15	ENSODEG00000006243 #16	ENSODEG00000007491 #17	ENSODEG00000007680 #18	ZNF644 (ENSODEG00000007732) #19	ENSODEG00000019117 #20	ENSODEG00000005537 #21	BARHL2 (ENSODEG00000006385) #22	ENSODEG00000006466 #23	ENSODEG00000006676 #24	ENSODEG00000005953 #25	LRRC8D (ENSODEG00000006005) #26	ENSODEG00000005688 #27	LRRC8C (ENSODEG00000006193) #28	LRRC8B (ENSODEG00000006259) #29	ENSODEG00000006443 #30	ENSODEG00000005271 #31	ENSODEG00000005949 #32	ENSODEG00000005251 #33	ENSODEG00000005694 #34	GBP5 (ENSODEG00000006465) #35
Long-tailed chinchilla	MODERN SPECIES	130	DIPK1A (ENSCLAG00000008376)	ENSCLAG00000008425	EVI5 (ENSCLAG00000008558)	GFI1 (ENSCLAG00000005915)	RPAP2 (ENSCLAG00000006291)	GLMN (ENSCLAG00000006922)	C1orf146 (ENSCLAG00000008485)	BTBD8 (ENSCLAG00000005766) #7	ENSCLAG00000006057	EPHX4 (ENSCLAG00000006155) #10	BRDT (ENSCLAG00000006404) #11	TGFBR3 (ENSCLAG00000007233) #14	CDC7 (ENSCLAG00000007469) #15	HFM1 (ENSCLAG00000005173) #16	ZNF644 (ENSCLAG00000006797) #19	BARHL2 (ENSCLAG00000004382) #22	ZNF326 (ENSCLAG00000004446) #25	LRRC8D (ENSCLAG00000017652) #26	LRRC8C (ENSCLAG00000004887) #28	LRRC8B (ENSCLAG00000004998) #29	ENSCLAG00000005124 #34	GBP5 (ENSCLAG00000004574) #35	ENSCLAG00000004762	ENSCLAG00000006815	ENSCLAG00000007012 #34	ENSCLAG00000007095 #31	ENSCLAG00000007669	ENSCLAG00000009272 #31	KYAT3 (ENSCLAG00000009697)	ENSCLAG00000009967	GTF2B (ENSCLAG00000003857)
Guinea pig	MODERN SPECIES	2	DIPK1A (ENSCPOG00000000700)	ENSCPOG00000032453	EVI5 (ENSCPOG00000006917)	GFI1 (ENSCPOG00000011727)	RPAP2 (ENSCPOG00000007163)	GLMN (ENSCPOG00000007152)	C1orf146 (ENSCPOG00000007147)	BTBD8 (ENSCPOG00000008296) #7	ENSCPOG00000012159 #8	EPHX4 (ENSCPOG00000001758) #10	ENSCPOG00000003841 #11	TGFBR3 (ENSCPOG00000007217) #14	CDC7 (ENSCPOG00000012756) #15	HFM1 (ENSCPOG00000007421) #16	ZNF644 (ENSCPOG00000035010) #19	BARHL2 (ENSCPOG00000019619) #22	ZNF326 (ENSCPOG00000007332) #25	LRRC8D (ENSCPOG00000008295) #26	LRRC8C (ENSCPOG00000033092) #28	LRRC8B (ENSCPOG00000006377) #29	ENSCPOG00000002143 #35	ENSCPOG00000036175	GBP1 (ENSCPOG00000015020) #31	ENSCPOG00000039361	ENSCPOG00000040155	S100A9 (ENSCPOG00000001685)	PGLYRP3 (ENSCPOG00000001678)	ENSCPOG00000035053	ENSCPOG00000019349	ENSCPOG00000038583	ENSCPOG00000035710