Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000006452.b.b #7	ENSGT00950000183210.d.a.c.a.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26	ENSGT00940000154265 #31	ENSGT00940000162684 #28	ENSGT00940000162370 #29	ENSGT00940000156840.b #34	ENSGT00940000164799	ENSGT00940000155827 #35	ENSGT00390000006671 #37	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b #15	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b #15	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26	ENSGT00940000162684 #28	ENSGT00940000162370 #29	ENSGT00940000163522.A #33	ENSGT00940000154265 #31	ENSGT00940000156840.b #34	ENSGT00940000155827 #35	ENSGT00390000006671 #37	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b #15	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26	ENSGT00940000162684 #28	ENSGT00940000162370 #29	ENSGT00940000163522.A #33	ENSGT00940000154265 #31	ENSGT00940000156840.b #34	ENSGT00940000155827 #35	ENSGT00390000006671 #37	ENSGT00940000154339	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a
Long-tailed chinchilla	MODERN SPECIES	130	DIPK1A (ENSCLAG00000008376) #7	ENSCLAG00000008425 #8	EVI5 (ENSCLAG00000008558) #9	GFI1 (ENSCLAG00000005915) #10	RPAP2 (ENSCLAG00000006291) #11	GLMN (ENSCLAG00000006922) #12	C1orf146 (ENSCLAG00000008485) #13	BTBD8 (ENSCLAG00000005766) #14	ENSCLAG00000006057 #15	EPHX4 (ENSCLAG00000006155) #16	BRDT (ENSCLAG00000006404) #17	TGFBR3 (ENSCLAG00000007233) #18	CDC7 (ENSCLAG00000007469) #19	HFM1 (ENSCLAG00000005173) #20	ZNF644 (ENSCLAG00000006797) #21	BARHL2 (ENSCLAG00000004382) #22	ZNF326 (ENSCLAG00000004446) #23	LRRC8D (ENSCLAG00000017652) #24	LRRC8C (ENSCLAG00000004887) #25	LRRC8B (ENSCLAG00000004998) #26	ENSCLAG00000005124 #27	GBP5 (ENSCLAG00000004574) #28	ENSCLAG00000004762 #29	ENSCLAG00000006815 #30	ENSCLAG00000007012 #31	ENSCLAG00000007095 #32	ENSCLAG00000007669 #33	ENSCLAG00000009272 #34	KYAT3 (ENSCLAG00000009697) #35	ENSCLAG00000009967 #36	GTF2B (ENSCLAG00000003857) #37
Degu	MODERN SPECIES	115	BTBD8 (ENSODEG00000006488) #14	ENSODEG00000007844	ENSODEG00000005277	EPHX4 (ENSODEG00000005661) #16	BRDT (ENSODEG00000006335) #17	ENSODEG00000005197	ENSODEG00000019153	TGFBR3 (ENSODEG00000005656) #18	CDC7 (ENSODEG00000007352) #19	ENSODEG00000006243 #20	ENSODEG00000007491	ENSODEG00000007680	ZNF644 (ENSODEG00000007732) #21	ENSODEG00000019117	ENSODEG00000005537	BARHL2 (ENSODEG00000006385) #22	ENSODEG00000006466	ENSODEG00000006676	ENSODEG00000005953 #23	LRRC8D (ENSODEG00000006005) #24	ENSODEG00000005688	LRRC8C (ENSODEG00000006193) #25	LRRC8B (ENSODEG00000006259) #26	ENSODEG00000006443	ENSODEG00000005271 #34	ENSODEG00000005949 #31	ENSODEG00000005251	ENSODEG00000005694 #31	GBP5 (ENSODEG00000006465) #28
Guinea pig	MODERN SPECIES	2	DIPK1A (ENSCPOG00000000700) #7	ENSCPOG00000032453 #8	EVI5 (ENSCPOG00000006917) #9	GFI1 (ENSCPOG00000011727) #10	RPAP2 (ENSCPOG00000007163) #11	GLMN (ENSCPOG00000007152) #12	C1orf146 (ENSCPOG00000007147) #13	BTBD8 (ENSCPOG00000008296) #14	ENSCPOG00000012159	EPHX4 (ENSCPOG00000001758) #16	ENSCPOG00000003841 #17	TGFBR3 (ENSCPOG00000007217) #18	CDC7 (ENSCPOG00000012756) #19	HFM1 (ENSCPOG00000007421) #20	ZNF644 (ENSCPOG00000035010) #21	BARHL2 (ENSCPOG00000019619) #22	ZNF326 (ENSCPOG00000007332) #23	LRRC8D (ENSCPOG00000008295) #24	LRRC8C (ENSCPOG00000033092) #25	LRRC8B (ENSCPOG00000006377) #26	ENSCPOG00000002143 #28	ENSCPOG00000036175 #29	GBP1 (ENSCPOG00000015020) #34	ENSCPOG00000039361	ENSCPOG00000040155	S100A9 (ENSCPOG00000001685)	PGLYRP3 (ENSCPOG00000001678)	ENSCPOG00000035053	ENSCPOG00000019349	ENSCPOG00000038583	ENSCPOG00000035710
Naked mole-rat female	MODERN SPECIES	10	RPAP2 (ENSHGLG00000009983) #11	ENSHGLG00000011940 #12	ENSHGLG00000012510 #13	ENSHGLG00000012851	BTBD8 (ENSHGLG00000008571) #14	ENSHGLG00000046149	ENSHGLG00000033060	ENSHGLG00000010230 #16	BRDT (ENSHGLG00000004317) #17	ENSHGLG00000046123	ENSHGLG00000004997 #18	CDC7 (ENSHGLG00000046565) #19	HFM1 (ENSHGLG00000007780) #20	ZNF644 (ENSHGLG00000008786) #21	ENSHGLG00000041803	ENSHGLG00000009126 #22	ENSHGLG00000032341	ENSHGLG00000040937	ZNF326 (ENSHGLG00000004782) #23	ENSHGLG00000033474	ENSHGLG00000036797 #25	ENSHGLG00000007352 #26	ENSHGLG00000031997	ENSHGLG00000004912 #28	ENSHGLG00000009330 #31	ENSHGLG00000007998 #28	ENSHGLG00000005453 #29	ENSHGLG00000006893 #33	GBP1 (ENSHGLG00000008509) #34	CCBL2 (ENSHGLG00000004456) #35	GTF2B (ENSHGLG00000045614) #37
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000006452.b.b #7	ENSGT00950000183210.d.a.c.a.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26
Marmotini	ANCESTRAL SPECIES	77	ENSGT00390000006452.b.b #7	ENSGT00950000183210.d.a.c.a.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26
Marmotini_b	ANCESTRAL SPECIES	116	ENSGT00390000006452.b.b #7	ENSGT00950000183210.d.a.c.a.a.b #8	ENSGT00940000153846.a.a #9	ENSGT00940000156166.a #10	ENSGT00390000017965 #11	ENSGT00390000018446 #12	ENSGT00390000008285 #13	ENSGT00940000154382.a.b #14	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #16	ENSGT00940000154549.a #17	ENSGT00530000063861.b.b #18	ENSGT00550000075011 #19	ENSGT00550000074822 #20	ENSGT00940000158258 #21	ENSGT00940000158611 #22	ENSGT00530000063777.b #23	ENSGT00940000154043.B #24	ENSGT00940000159250 #25	ENSGT00940000160703 #26
Arctic ground squirrel	MODERN SPECIES	438															ZNF644 (ENSUPAG00010000656) #21	BARHL2 (ENSUPAG00010000739) #22	ZNF326 (ENSUPAG00010000766) #23	LRRC8D (ENSUPAG00010000796) #24	LRRC8C (ENSUPAG00010000800) #25	LRRC8B (ENSUPAG00010000818) #26
Squirrel	MODERN SPECIES	137	DIPK1A (ENSSTOG00000023846) #7	ENSSTOG00000010256 #8	EVI5 (ENSSTOG00000015190) #9	GFI1 (ENSSTOG00000014583) #10	ENSSTOG00000030075 #11	GLMN (ENSSTOG00000022944) #12	C1orf146 (ENSSTOG00000012506) #13	BTBD8 (ENSSTOG00000027118) #14	ENSSTOG00000012470	EPHX4 (ENSSTOG00000022582) #16	ENSSTOG00000003060 #17	TGFBR3 (ENSSTOG00000011061) #18	CDC7 (ENSSTOG00000002130) #19	ENSSTOG00000008477 #20	ZNF644 (ENSSTOG00000027631) #21	BARHL2 (ENSSTOG00000025888) #22	ZNF326 (ENSSTOG00000005176) #23	LRRC8D (ENSSTOG00000005165) #24	LRRC8C (ENSSTOG00000010193) #25
Alpin marmot	MODERN SPECIES	70	EVI5 (ENSMMMG00000024020) #9	GFI1 (ENSMMMG00000024023) #10	RPAP2 (ENSMMMG00000024024) #11	GLMN (ENSMMMG00000024029) #12	C1orf146 (ENSMMMG00000024030) #13	BTBD8 (ENSMMMG00000024032) #14	ENSMMMG00000024033	EPHX4 (ENSMMMG00000024034) #16	ENSMMMG00000024035 #17	ENSMMMG00000024036	ENSMMMG00000024037 #17	TGFBR3 (ENSMMMG00000024040) #18	CDC7 (ENSMMMG00000024042) #19	HFM1 (ENSMMMG00000024043) #20	ZNF644 (ENSMMMG00000024044) #21	BARHL2 (ENSMMMG00000024045) #22	ZNF326 (ENSMMMG00000024046) #23	LRRC8D (ENSMMMG00000024047) #24	LRRC8C (ENSMMMG00000024049) #25	LRRC8B (ENSMMMG00000024050) #26	GBP6 (ENSMMMG00000024051) #31	ENSMMMG00000024052 #31	ENSMMMG00000024054 #28	ENSMMMG00000024061 #28	ENSMMMG00000024063 #28	ENSMMMG00000024064 #29
Eurasian red squirrel	MODERN SPECIES		EVI5 (ENSSVLG00005004175) #9	GFI1 (ENSSVLG00005004132) #10	ENSSVLG00005004104	RPAP2 (ENSSVLG00005004082) #11	GLMN (ENSSVLG00005004063) #12	C1orf146 (ENSSVLG00005004047) #13	BTBD8 (ENSSVLG00005003975) #14	EPHX4 (ENSSVLG00005003946) #16	BRDT (ENSSVLG00005003821) #17	TGFBR3 (ENSSVLG00005003738) #18	CDC7 (ENSSVLG00005003704) #19	ENSSVLG00005003691	ENSSVLG00005003666 #20	ENSSVLG00005003646	ZNF644 (ENSSVLG00005003587) #21	BARHL2 (ENSSVLG00005003545) #22	ZNF326 (ENSSVLG00005003520) #23	LRRC8D (ENSSVLG00005003504) #24	LRRC8C (ENSSVLG00005003487) #25	LRRC8B (ENSSVLG00005003471) #26	ENSSVLG00005003180 #31	ENSSVLG00005002842 #31	ENSSVLG00005002699 #28	ENSSVLG00005002652 #28	ENSSVLG00005002479 #29	ENSSVLG00005002378 #31	ENSSVLG00005002359	ENSSVLG00005002262 #33	ENSSVLG00005002213 #34	ENSSVLG00005002172 #33	ENSSVLG00005002126 #28