Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A #16	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.a.a.b #26	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##25	ENSGT01030000234639.A.b.a.b.a.b.a.b ##25	ENSGT00940000159916	ENSGT00940000160123	ENSGT00390000007101.d.b	ENSGT00940000154133.A	ENSGT00970000193605	ENSGT00940000153903.a.b.b	ENSGT00940000153903.a.a	ENSGT00940000161479	ENSGT00940000153201.j.l.f.a.a.a	ENSGT00390000015066
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00390000001698	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A #16	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a #26	ENSGT01030000234639.A.b.a.b.a.b.b #25	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.b ##25	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##25	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##25	ENSGT01030000234639.A.b.a.b.a.b.a.b ##25	ENSGT00940000159916	ENSGT00940000160123	ENSGT00390000007101.d.b	ENSGT00940000154133.A	ENSGT00970000193605	ENSGT00940000153903.a.b.b	ENSGT00940000153903.a.a
Marmotini	ANCESTRAL SPECIES	22	ENSGT00390000001698	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A #16	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.b.t.a #25	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a.a.a #26	ENSGT01030000234639.A.b.a.b.a.b.b.t.b ##25	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.b ##25	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##25	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##25	ENSGT01030000234639.A.b.a.b.a.b.a.b ##25	ENSGT00940000159916	ENSGT00940000160123	ENSGT00390000007101.d.b	ENSGT00940000154133.A	ENSGT01040000242859	ENSGT00970000193605
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00390000001698	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A #16	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.b.t.a #25	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a.a.a #26
Arctic ground squirrel	MODERN SPECIES	316										ENSUPAG00010013688 #16	SLC6A5 (ENSUPAG00010013625) #17	PRMT3 (ENSUPAG00010013599) #18	HTATIP2 (ENSUPAG00010013589) #19	DBX1 (ENSUPAG00010013581) #20	NAV2 (ENSUPAG00010013293) #21	E2F8 (ENSUPAG00010013253) #22	CSRP3 (ENSUPAG00010013238) #23	ZDHHC13 (ENSUPAG00010013217) #24	ENSUPAG00010013207 #25	ENSUPAG00010013197 #26	ENSUPAG00010013162 #27	ENSUPAG00010013152 #28	ENSUPAG00010013113 #29
Squirrel	MODERN SPECIES	254				CCDC179 (ENSSTOG00000029735)	SVIP (ENSSTOG00000027870)	GAS2 (ENSSTOG00000019773)	SLC17A6 (ENSSTOG00000001387)	ANO5 (ENSSTOG00000015037)	ENSSTOG00000022492	NELL1 (ENSSTOG00000011270) #16	SLC6A5 (ENSSTOG00000011254) #17	PRMT3 (ENSSTOG00000011235) #18	HTATIP2 (ENSSTOG00000011216) #19	DBX1 (ENSSTOG00000015557) #20	NAV2 (ENSSTOG00000015535) #21	E2F8 (ENSSTOG00000008838) #22	CSRP3 (ENSSTOG00000008826) #23	ZDHHC13 (ENSSTOG00000008801) #24	ENSSTOG00000026362 #25	ENSSTOG00000029190 #26
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000006692	LUZP2 (ENSMMMG00000006650)	CCDC179 (ENSMMMG00000006624)	SVIP (ENSMMMG00000006618)	GAS2 (ENSMMMG00000006596)	FANCF (ENSMMMG00000006591)	SLC17A6 (ENSMMMG00000006549)	ANO5 (ENSMMMG00000006315)	ENSMMMG00000006289	NELL1 (ENSMMMG00000006243) #16	SLC6A5 (ENSMMMG00000006139) #17	PRMT3 (ENSMMMG00000006103) #18	HTATIP2 (ENSMMMG00000006085) #19	DBX1 (ENSMMMG00000006060) #20	NAV2 (ENSMMMG00000005729) #21	E2F8 (ENSMMMG00000005636) #22	CSRP3 (ENSMMMG00000005617) #23	ZDHHC13 (ENSMMMG00000005601) #24	ENSMMMG00000005582 #25	ENSMMMG00000005573 #26	ENSMMMG00000005563 ##25	ENSMMMG00000005501 ##25	ENSMMMG00000005493 ##25	ENSMMMG00000005471 ##25	ENSMMMG00000005461	ENSMMMG00000005438 ##25	ENSMMMG00000005434 ##25	PTPN5 (ENSMMMG00000005398)	TMEM86A (ENSMMMG00000005376)	SPTY2D1 (ENSMMMG00000005363)	ENSMMMG00000005356
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005009036	CCDC179 (ENSSVLG00005009068)	SVIP (ENSSVLG00005009105)	GAS2 (ENSSVLG00005009154)	FANCF (ENSSVLG00005009225)	SLC17A6 (ENSSVLG00005009243)	ANO5 (ENSSVLG00005009328)	NELL1 (ENSSVLG00005009524) #16	ENSSVLG00005010068	SLC6A5 (ENSSVLG00005010114) #17	PRMT3 (ENSSVLG00005010215) #18	HTATIP2 (ENSSVLG00005010416) #19	ENSSVLG00005010464	DBX1 (ENSSVLG00005010496) #20	NAV2 (ENSSVLG00005010849) #21	E2F8 (ENSSVLG00005013111) #22	CSRP3 (ENSSVLG00005013306) #23	ZDHHC13 (ENSSVLG00005013400) #24	ENSSVLG00005013527 #26	ENSSVLG00005013618	ENSSVLG00005013656 ##25	ENSSVLG00005013725	ENSSVLG00005013794 ##25	ENSSVLG00005013852 ##25	ENSSVLG00005013891 ##25	ENSSVLG00005013942 ##25	ENSSVLG00005014019	ENSSVLG00005014064 ##25	PTPN5 (ENSSVLG00005014173)	IGSF22 (ENSSVLG00005014642)	TMEM86A (ENSSVLG00005014883)
Hystricomorpha	ANCESTRAL SPECIES	50	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A #16	ENSGT00950000182989.D.a.a.g.b	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##25
Hystricomorpha_a	ANCESTRAL SPECIES	57	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A #16	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##25
Hystricomorpha_b	ANCESTRAL SPECIES	69	ENSGT00390000013180	ENSGT00660000097475	ENSGT00390000007067	ENSGT00940000155755	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A #16	ENSGT00940000154963 #17	ENSGT00940000156825 #18	ENSGT00390000008184 #19	ENSGT00950000183093.B #20	ENSGT00940000155663 #21	ENSGT00940000158651 #22	ENSGT00940000159533 #23	ENSGT00530000063074.b.a #24	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##25
Long-tailed chinchilla	MODERN SPECIES	183	LUZP2 (ENSCLAG00000002837)	CCDC179 (ENSCLAG00000002769)	ENSCLAG00000002736	GAS2 (ENSCLAG00000002702)	FANCF (ENSCLAG00000002545)	SLC17A6 (ENSCLAG00000002517)	ANO5 (ENSCLAG00000002451)	ENSCLAG00000002401	ENSCLAG00000002387	NELL1 (ENSCLAG00000001714) #16	SLC6A5 (ENSCLAG00000001544) #17	PRMT3 (ENSCLAG00000001520) #18	HTATIP2 (ENSCLAG00000001494) #19	DBX1 (ENSCLAG00000001428) #20	NAV2 (ENSCLAG00000001837) #21	E2F8 (ENSCLAG00000001357) #22	CSRP3 (ENSCLAG00000001304) #23	ZDHHC13 (ENSCLAG00000001261) #24	ENSCLAG00000001226 ##25
Degu	MODERN SPECIES	200	ENSODEG00000000771	ENSODEG00000000779	FANCF (ENSODEG00000000786)	SLC17A6 (ENSODEG00000000829)	ANO5 (ENSODEG00000000906)	ENSODEG00000000998	NELL1 (ENSODEG00000000600) #16	ENSODEG00000018648	SLC6A5 (ENSODEG00000000719) #17	PRMT3 (ENSODEG00000000824) #18	ENSODEG00000000894	HTATIP2 (ENSODEG00000000910) #19	DBX1 (ENSODEG00000000930) #20	NAV2 (ENSODEG00000001086) #21	ENSODEG00000001265	E2F8 (ENSODEG00000001309) #22	CSRP3 (ENSODEG00000001395) #23	ZDHHC13 (ENSODEG00000001434) #24	ENSODEG00000001474	ENSODEG00000001487 ##25
Guinea pig	MODERN SPECIES	131								NELL1 (ENSCPOG00000012897) #16	ENSCPOG00000020492	ENSCPOG00000019709	SLC6A5 (ENSCPOG00000022201) #17	PRMT3 (ENSCPOG00000034377) #18	HTATIP2 (ENSCPOG00000039427) #19	DBX1 (ENSCPOG00000019811) #20	NAV2 (ENSCPOG00000002933) #21	E2F8 (ENSCPOG00000013766) #22	CSRP3 (ENSCPOG00000034626) #23	ZDHHC13 (ENSCPOG00000013760) #24	ENSCPOG00000022242 ##25
Naked mole-rat female	MODERN SPECIES	24	SVIP (ENSHGLG00000045445)	GAS2 (ENSHGLG00000005611)	FANCF (ENSHGLG00000005261)	ENSHGLG00000040458	SLC17A6 (ENSHGLG00000004814)	ANO5 (ENSHGLG00000004675)	ENSHGLG00000043519	NELL1 (ENSHGLG00000008681) #16	ENSHGLG00000044110	SLC6A5 (ENSHGLG00000005789) #17	ENSHGLG00000008724 #18	ENSHGLG00000043469 #19	DBX1 (ENSHGLG00000006330) #20	NAV2 (ENSHGLG00000004620) #21	ENSHGLG00000047857	E2F8 (ENSHGLG00000008627) #22	CSRP3 (ENSHGLG00000007338) #23	ZDHHC13 (ENSHGLG00000005577) #24	ENSHGLG00000048993	ENSHGLG00000049388 ##25	ENSHGLG00000043200 #25	ENSHGLG00000040637	ENSHGLG00000048127 #25	ENSHGLG00000041424 #25	ENSHGLG00000046737 #25	ENSHGLG00000035050 ##25	ENSHGLG00000004153	ENSHGLG00000039941 ##25	ENSHGLG00000038400	ENSHGLG00000009118	ENSHGLG00000008779