Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00390000017840 #7	ENSGT00950000182905.a.a.b #8	ENSGT00940000158208 #11	ENSGT00940000154770 #10	ENSGT00940000160351 #9	ENSGT00940000158956 #12	ENSGT00530000063603.A #13	ENSGT00390000006679.a #14	ENSGT01070000253775.a.d.b #15	ENSGT00940000160422 #16	ENSGT00940000161404 #17	ENSGT00940000156890.a.a #18	ENSGT00940000159439 #19	ENSGT00390000003427 #20	ENSGT00530000064137.a.a #21	ENSGT00390000006305 #22	ENSGT00550000075017 #23	ENSGT00950000182860.a.b.a #24	ENSGT00940000160235 #25	ENSGT00940000162107 #26	ENSGT00940000160065 #27	ENSGT00940000155609 #28	ENSGT00950000183092.a #29	ENSGT00940000161040 #30	ENSGT00390000002762.a.a #31	ENSGT00950000182883.b.a.b #32	ENSGT00940000157899.b #33	ENSGT01080000257420.C.b.a #34	ENSGT00390000006330.a.b #35	ENSGT00390000002174.a #36	ENSGT00940000160660 #37
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00390000017840 #7	ENSGT00950000182905.a.a.b #8	ENSGT00940000158208 #11	ENSGT00940000154770 #10	ENSGT00940000160351 #9	ENSGT00940000158956 #12	ENSGT00530000063603.A #13	ENSGT00390000006679.a #14	ENSGT01070000253775.a.d.b #15	ENSGT00940000160422 #16	ENSGT00940000161404 #17	ENSGT00940000156890.a.a #18	ENSGT00940000159439 #19	ENSGT00390000003427 #20	ENSGT00530000064137.a.a #21	ENSGT00390000006305 #22	ENSGT00550000075017 #23	ENSGT00950000182860.a.b.a #24	ENSGT00940000160235 #25	ENSGT00940000162107 #26	ENSGT00940000160065 #27	ENSGT00940000155609 #28	ENSGT00950000183092.a #29	ENSGT00940000161040 #30	ENSGT00390000002762.a.a #31	ENSGT00950000182883.b.a.b #32	ENSGT00940000157899.b #33	ENSGT01080000257420.C.b.a #34	ENSGT00390000006330.a.b #35	ENSGT00390000002174.a #36	ENSGT00940000160660 #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00390000017840 #7	ENSGT00950000182905.a.a.b #8	ENSGT00940000158208 #11	ENSGT00940000154770 #10	ENSGT00940000160351 #9	ENSGT00940000158956 #12	ENSGT00530000063603.A #13	ENSGT00390000006679.a #14	ENSGT01070000253775.a.d.b #15	ENSGT00940000160422 #16	ENSGT00940000161404 #17	ENSGT00940000156890.a.a #18	ENSGT00940000159439 #19	ENSGT00390000003427 #20	ENSGT00530000064137.a.a #21	ENSGT00390000006305 #22	ENSGT00550000075017 #23	ENSGT00950000182860.a.b.a #24	ENSGT00940000160235 #25	ENSGT00940000162107 #26	ENSGT00940000160065 #27	ENSGT00940000155609 #28	ENSGT00950000183092.a #29	ENSGT00940000161040 #30	ENSGT00390000002762.a.a #31	ENSGT00950000182883.b.a.b #32	ENSGT00940000157899.b #33	ENSGT01080000257420.C.b.a #34	ENSGT00390000006330.a.b #35	ENSGT00390000002174.a #36	ENSGT00940000160660 #37
Long-tailed chinchilla	MODERN SPECIES	165	METTL1 (ENSCLAG00000014968) #7	CYP27B1 (ENSCLAG00000013845) #8	TSPAN31 (ENSCLAG00000013511) #9	CDK4 (ENSCLAG00000012995) #10	MARCHF9 (ENSCLAG00000012609) #11	AGAP2 (ENSCLAG00000009332) #12	OS9 (ENSCLAG00000010151) #13	B4GALNT1 (ENSCLAG00000009160) #14	ENSCLAG00000011703 #15	ARHGEF25 (ENSCLAG00000010120) #16	DTX3 (ENSCLAG00000008560) #17	PIP4K2C (ENSCLAG00000012549) #18	KIF5A (ENSCLAG00000011917) #19	DCTN2 (ENSCLAG00000010761) #20	MBD6 (ENSCLAG00000010083) #21	DDIT3 (ENSCLAG00000009376) #22	MARS1 (ENSCLAG00000012164) #23	ARHGAP9 (ENSCLAG00000015213) #24	GLI1 (ENSCLAG00000010833) #25	INHBE (ENSCLAG00000013199) #26	INHBC (ENSCLAG00000015051) #27	R3HDM2 (ENSCLAG00000011997) #28	STAC3 (ENSCLAG00000017371) #29	NDUFA4L2 (ENSCLAG00000017351) #30	SHMT2 (ENSCLAG00000014378) #31	NXPH4 (ENSCLAG00000016280) #32	LRP1 (ENSCLAG00000011741) #33	STAT6 (ENSCLAG00000011587) #34	NAB2 (ENSCLAG00000009310) #35	NEMP1 (ENSCLAG00000011169) #36	MYO1A (ENSCLAG00000009254) #37
Degu	MODERN SPECIES	327	CYP27B1 (ENSODEG00000001745) #8	MARCHF9 (ENSODEG00000001713) #11	ENSODEG00000001702 #10	TSPAN31 (ENSODEG00000001691) #9	AGAP2 (ENSODEG00000001675) #12	OS9 (ENSODEG00000001586) #13	B4GALNT1 (ENSODEG00000002156) #14	ENSODEG00000002108 #15	ARHGEF25 (ENSODEG00000002032) #16	DTX3 (ENSODEG00000001975) #17	PIP4K2C (ENSODEG00000001958) #18	KIF5A (ENSODEG00000001884) #19	DCTN2 (ENSODEG00000001844) #20	ENSODEG00000001830 #21	ENSODEG00000001814 #21	DDIT3 (ENSODEG00000001801) #22	MARS1 (ENSODEG00000001752) #23	ARHGAP9 (ENSODEG00000001619) #24	GLI1 (ENSODEG00000001558) #25	INHBE (ENSODEG00000001543) #26	INHBC (ENSODEG00000001532) #27	ENSODEG00000001520 #28	ENSODEG00000001512	ENSODEG00000001494 #28	ENSODEG00000001478	STAC3 (ENSODEG00000001424) #29	NDUFA4L2 (ENSODEG00000002560) #30	ENSODEG00000002538 #31	NXPH4 (ENSODEG00000002515) #32	LRP1 (ENSODEG00000002173) #33	STAT6 (ENSODEG00000001929) #34
Guinea pig	MODERN SPECIES	9	EEF1AKMT3 (ENSCPOG00000011497)	METTL1 (ENSCPOG00000000066) #7	CYP27B1 (ENSCPOG00000019603) #8	MARCHF9 (ENSCPOG00000002671) #11	CDK4 (ENSCPOG00000033131) #10	TSPAN31 (ENSCPOG00000011494) #9	AGAP2 (ENSCPOG00000022267) #12	OS9 (ENSCPOG00000002667) #13	B4GALNT1 (ENSCPOG00000003202) #14	ENSCPOG00000033620 #15	ARHGEF25 (ENSCPOG00000020097) #16	PIP4K2C (ENSCPOG00000022071) #18	KIF5A (ENSCPOG00000012882) #19	DCTN2 (ENSCPOG00000012879) #20	MBD6 (ENSCPOG00000012873) #21	DDIT3 (ENSCPOG00000012871) #22	MARS1 (ENSCPOG00000012866) #23	ARHGAP9 (ENSCPOG00000014343) #24	GLI1 (ENSCPOG00000005414) #25	INHBE (ENSCPOG00000031115) #26	INHBC (ENSCPOG00000033593) #27	R3HDM2 (ENSCPOG00000009217) #28	STAC3 (ENSCPOG00000006200) #29	NDUFA4L2 (ENSCPOG00000035802) #30	SHMT2 (ENSCPOG00000012840) #31	LRP1 (ENSCPOG00000031730) #33	STAT6 (ENSCPOG00000012941) #34	NAB2 (ENSCPOG00000012940) #35	NEMP1 (ENSCPOG00000034078) #36	MYO1A (ENSCPOG00000012927) #37	TAC3 (ENSCPOG00000012924)
Naked mole-rat female	MODERN SPECIES	26	CBLN1 (ENSHGLG00000039996)	ENSHGLG00000008302	ZNF423 (ENSHGLG00000007674)	ENSHGLG00000021434	CNEP1R1 (ENSHGLG00000046645)	HEATR3 (ENSHGLG00000004488)	TENT4B (ENSHGLG00000004206)	ADCY7 (ENSHGLG00000006152)	BRD7 (ENSHGLG00000005800)	NKD1 (ENSHGLG00000041852)	SNX20 (ENSHGLG00000004254)	NOD2 (ENSHGLG00000003967)	ENSHGLG00000005762	ENSHGLG00000004288	ENSHGLG00000046400	ENSHGLG00000003699 #22	ENSHGLG00000003522	ENSHGLG00000003452	ENSHGLG00000014938	RBL2 (ENSHGLG00000012893)	AKTIP (ENSHGLG00000008426)	RPGRIP1L (ENSHGLG00000008154)	ENSHGLG00000050695	FTO (ENSHGLG00000005386)	IRX3 (ENSHGLG00000004630)	IRX5 (ENSHGLG00000004006)	IRX6 (ENSHGLG00000003805)	MMP2 (ENSHGLG00000003708)	LPCAT2 (ENSHGLG00000006950)	SLC6A2 (ENSHGLG00000006203)	ENSHGLG00000005501