Euarchontoglires_A ANCESTRAL SPECIES 3 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Glires ANCESTRAL SPECIES 12 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Rodentia ANCESTRAL SPECIES 3 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01050000245403.b ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Rodentia_B ANCESTRAL SPECIES 7 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01050000245403.b ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Myomorpha ANCESTRAL SPECIES 7 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01050000245403.b ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Lesser Egyptian jerboa MODERN SPECIES 41 Tnfaip2 (ENSJJAG00000010132) #7 Sipa1l1 (ENSJJAG00000023961) #8 Rgs6 (ENSJJAG00000022127) #9 Dpf3 (ENSJJAG00000014377) #10 Dcaf4 (ENSJJAG00000021188) #11 ENSJJAG00000018792 #12 ENSJJAG00000024002 #13 ENSJJAG00000022825 #14 Psen1 (ENSJJAG00000002135) #15 Papln (ENSJJAG00000000927) #16 Numb (ENSJJAG00000019014) #17 Riox1 (ENSJJAG00000019037) #18 Heatr4 (ENSJJAG00000018627) #19 ENSJJAG00000014618 #20 ENSJJAG00000011596 #21 Dnal1 (ENSJJAG00000017347) #22 Pnma1 (ENSJJAG00000002278) #23 Mideas (ENSJJAG00000012181) #24 Ptgr2 (ENSJJAG00000004075) #25 Zfp410 (ENSJJAG00000011182) #26 Fam161b (ENSJJAG00000010436) #27 Coq6 (ENSJJAG00000013225) #28 Entpd5 (ENSJJAG00000012303) #29 Bbof1 (ENSJJAG00000012977) #30 Aldh6a1 (ENSJJAG00000005519) #31 ENSJJAG00000015460 #32 Vsx2 (ENSJJAG00000011877) #33 Abcd4 (ENSJJAG00000014302) #34 Vrtn (ENSJJAG00000008057) #35 Syndig1l (ENSJJAG00000012505) #36 Npc2 (ENSJJAG00000017648) #37 Muroidea ANCESTRAL SPECIES 16 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Upper Galilee mountains blind mole rat MODERN SPECIES 1502 Rgs6 (ENSNGAG00000015965) #9 Dpf3 (ENSNGAG00000018079) #10 Dcaf4 (ENSNGAG00000012972) #11 Zfyve1 (ENSNGAG00000009405) #12 ENSNGAG00000019959 Rbm25 (ENSNGAG00000018465) Psen1 (ENSNGAG00000017181) #15 Papln (ENSNGAG00000019406) #16 ENSNGAG00000012297 #17 Riox1 (ENSNGAG00000003031) #18 ENSNGAG00000001266 ##20 ENSNGAG00000001269 ##20 Acot4 (ENSNGAG00000010998) #20 ENSNGAG00000016652 ##20 Acot6 (ENSNGAG00000015805) ##20 Dnal1 (ENSNGAG00000010152) #22 Pnma1 (ENSNGAG00000015203) #23 Mideas (ENSNGAG00000008541) #24 ENSNGAG00000000298 Ptgr2 (ENSNGAG00000016685) #25 Zfp410 (ENSNGAG00000000633) #26 Fam161b (ENSNGAG00000016812) #27 Coq6 (ENSNGAG00000015962) #28 Entpd5 (ENSNGAG00000011773) #29 Bbof1 (ENSNGAG00000013123) #30 Aldh6a1 (ENSNGAG00000000245) #31 Lin52 (ENSNGAG00000014697) #32 Vsx2 (ENSNGAG00000011608) #33 Abcd4 (ENSNGAG00000017662) #34 Syndig1l (ENSNGAG00000013742) #36 Npc2 (ENSNGAG00000012246) #37 Muroidea_A ANCESTRAL SPECIES 15 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##20 ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Murinae ANCESTRAL SPECIES 8 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##20 ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Mus ANCESTRAL SPECIES 10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##20 ENSGT00390000000083.a #18 ENSGT01010000222336.a.a.a.ob.a.a.c.b.c ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##20 ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Mus_A ANCESTRAL SPECIES 17 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##20 ENSGT00390000000083.a #18 ENSGT01010000222336.a.a.a.ob.a.a.c.b.c ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##20 ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Mus_B ANCESTRAL SPECIES 17 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##20 ENSGT00390000000083.a #18 ENSGT00900000143211 ENSGT01010000222336.a.a.a.ob.a.a.c.b.c ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##20 ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Mouse MODERN SPECIES 3 Dcaf4 (ENSMUSG00000021222) #11 Zfyve1 (ENSMUSG00000042628) #12 Rbm25 (ENSMUSG00000010608) Psen1 (ENSMUSG00000019969) #15 Papln (ENSMUSG00000021223) #16 Numb (ENSMUSG00000021224) #17 Riox1 (ENSMUSG00000046791) #18 Heatr4 (ENSMUSG00000090843) #19 Acot2 (ENSMUSG00000021226) ##20 Acot1 (ENSMUSG00000072949) ##20 Acot4 (ENSMUSG00000052392) #20 Gm49366 (ENSMUSG00000113475) Acot3 (ENSMUSG00000021228) ##20 Acot5 (ENSMUSG00000042540) ##20 Acot6 (ENSMUSG00000043487) ##20 Dnal1 (ENSMUSG00000042523) #22 Pnma1 (ENSMUSG00000054383) #23 Mideas (ENSMUSG00000042507) #24 Ptgr2 (ENSMUSG00000072946) #25 Zfp410 (ENSMUSG00000042472) #26 Fam161b (ENSMUSG00000021234) #27 Coq6 (ENSMUSG00000021235) #28 Entpd5 (ENSMUSG00000021236) #29 Bbof1 (ENSMUSG00000057265) #30 Rnf113a2 (ENSMUSG00000098134) Aldh6a1 (ENSMUSG00000021238) #31 Lin52 (ENSMUSG00000085793) #32 Vsx2 (ENSMUSG00000021239) #33 Abcd4 (ENSMUSG00000021240) #34 Vrtn (ENSMUSG00000071235) #35 Syndig1l (ENSMUSG00000071234) #36 Mus_C ANCESTRAL SPECIES 11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##20 ENSGT00390000000083.a #18 ENSGT00900000143211 ENSGT01010000222336.a.a.a.ob.a.a.c.b.c ##20 ENSGT01050000245403.b ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##20 ENSGT01050000245403.a ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 spretus MODERN SPECIES 3 Dcaf4 (MGP_SPRETEiJ_G0018764) #11 Zfyve1 (MGP_SPRETEiJ_G0018765) #12 MGP_SPRETEiJ_G0018766 Psen1 (MGP_SPRETEiJ_G0018767) #15 Papln (MGP_SPRETEiJ_G0018768) #16 Numb (MGP_SPRETEiJ_G0018769) #17 Riox1 (MGP_SPRETEiJ_G0018770) #18 MGP_SPRETEiJ_G0018771 Heatr4 (MGP_SPRETEiJ_G0018772) #19 MGP_SPRETEiJ_G0018773 ##20 MGP_SPRETEiJ_G0018774 ##20 MGP_SPRETEiJ_G0018775 ##20 Acot3 (MGP_SPRETEiJ_G0018776) ##20 Acot5 (MGP_SPRETEiJ_G0018777) ##20 MGP_SPRETEiJ_G0018778 ##20 Dnal1 (MGP_SPRETEiJ_G0018779) #22 Pnma1 (MGP_SPRETEiJ_G0018780) #23 Mideas (MGP_SPRETEiJ_G0018781) #24 Ptgr2 (MGP_SPRETEiJ_G0018782) #25 Zfp410 (MGP_SPRETEiJ_G0018783) #26 Fam161b (MGP_SPRETEiJ_G0018784) #27 Coq6 (MGP_SPRETEiJ_G0018785) #28 Entpd5 (MGP_SPRETEiJ_G0018786) #29 Bbof1 (MGP_SPRETEiJ_G0018787) #30 Rnf113a2 (MGP_SPRETEiJ_G0018788) Aldh6a1 (MGP_SPRETEiJ_G0018789) #31 MGP_SPRETEiJ_G0018790 #32 Vsx2 (MGP_SPRETEiJ_G0018791) #33 Abcd4 (MGP_SPRETEiJ_G0018792) #34 Vrtn (MGP_SPRETEiJ_G0018793) #35 Syndig1l (MGP_SPRETEiJ_G0018794) #36 Steppe mouse MODERN SPECIES 3303 Dcaf4 (ENSMSIG00000001923) #11 Zfyve1 (ENSMSIG00000001995) #12 ENSMSIG00000002025 Rbm25 (ENSMSIG00000002048) Psen1 (ENSMSIG00000002158) #15 Papln (ENSMSIG00000002234) #16 ENSMSIG00000002517 #17 Heatr4 (ENSMSIG00000002642) #19 Riox1 (ENSMSIG00000002696) #18 Acot1 (ENSMSIG00000002711) ##20 Acot3 (ENSMSIG00000002760) ##20 ENSMSIG00000002815 ENSMSIG00000002825 Acot5 (ENSMSIG00000002856) ##20 Acot6 (ENSMSIG00000002911) ##20 Dnal1 (ENSMSIG00000002943) #22 Pnma1 (ENSMSIG00000003016) #23 Mideas (ENSMSIG00000003037) #24 Ptgr2 (ENSMSIG00000003090) #25 Zfp410 (ENSMSIG00000003181) #26 ENSMSIG00000003267 #27 Coq6 (ENSMSIG00000003335) #28 Entpd5 (ENSMSIG00000003494) #29 Bbof1 (ENSMSIG00000003750) #30 Aldh6a1 (ENSMSIG00000003829) #31 ENSMSIG00000003864 #32 Vsx2 (ENSMSIG00000003898) #33 Abcd4 (ENSMSIG00000003952) #34 Vrtn (ENSMSIG00000004123) #35 ENSMSIG00000004137 #36 Npc2 (ENSMSIG00000004195) #37 Ryukyu mouse MODERN SPECIES 3 Dcaf4 (MGP_CAROLIEiJ_G0017919) #11 Zfyve1 (MGP_CAROLIEiJ_G0017920) #12 Rbm25 (MGP_CAROLIEiJ_G0017921) Psen1 (MGP_CAROLIEiJ_G0017922) #15 Papln (MGP_CAROLIEiJ_G0017923) #16 Numb (MGP_CAROLIEiJ_G0017924) #17 Riox1 (MGP_CAROLIEiJ_G0017925) #18 MGP_CAROLIEiJ_G0017926 Heatr4 (MGP_CAROLIEiJ_G0017927) #19 Acot4 (MGP_CAROLIEiJ_G0017928) #20 MGP_CAROLIEiJ_G0017929 ##20 MGP_CAROLIEiJ_G0017930 ##20 Acot3 (MGP_CAROLIEiJ_G0017931) ##20 Acot5 (MGP_CAROLIEiJ_G0017932) ##20 Acot6 (MGP_CAROLIEiJ_G0017933) ##20 Dnal1 (MGP_CAROLIEiJ_G0017934) #22 Pnma1 (MGP_CAROLIEiJ_G0017935) #23 Mideas (MGP_CAROLIEiJ_G0017936) #24 Ptgr2 (MGP_CAROLIEiJ_G0017937) #25 Zfp410 (MGP_CAROLIEiJ_G0017938) #26 Fam161b (MGP_CAROLIEiJ_G0017939) #27 Coq6 (MGP_CAROLIEiJ_G0017940) #28 Entpd5 (MGP_CAROLIEiJ_G0017941) #29 Bbof1 (MGP_CAROLIEiJ_G0017942) #30 Rnf113a2 (MGP_CAROLIEiJ_G0017943) Aldh6a1 (MGP_CAROLIEiJ_G0017944) #31 MGP_CAROLIEiJ_G0017945 #32 Vsx2 (MGP_CAROLIEiJ_G0017946) #33 Abcd4 (MGP_CAROLIEiJ_G0017947) #34 Vrtn (MGP_CAROLIEiJ_G0017948) #35 Syndig1l (MGP_CAROLIEiJ_G0017949) #36 Shrew mouse MODERN SPECIES 20 Psen1 (MGP_PahariEiJ_G0029678) #15 Papln (MGP_PahariEiJ_G0029679) #16 Numb (MGP_PahariEiJ_G0029680) #17 Riox1 (MGP_PahariEiJ_G0029681) #18 MGP_PahariEiJ_G0029682 Heatr4 (MGP_PahariEiJ_G0029683) #19 Or8b47 (MGP_PahariEiJ_G0029684) MGP_PahariEiJ_G0029685 MGP_PahariEiJ_G0029686 MGP_PahariEiJ_G0029687 ##20 MGP_PahariEiJ_G0029688 ##20 Acot4 (MGP_PahariEiJ_G0029689) #20 MGP_PahariEiJ_G0029690 ##20 Acot5 (MGP_PahariEiJ_G0029691) ##20 Acot6 (MGP_PahariEiJ_G0029692) ##20 Dnal1 (MGP_PahariEiJ_G0029693) #22 Pnma1 (MGP_PahariEiJ_G0029694) #23 Mideas (MGP_PahariEiJ_G0029695) #24 Ptgr2 (MGP_PahariEiJ_G0029696) #25 Zfp410 (MGP_PahariEiJ_G0029697) #26 Fam161b (MGP_PahariEiJ_G0029698) #27 Coq6 (MGP_PahariEiJ_G0029699) #28 Entpd5 (MGP_PahariEiJ_G0029700) #29 Bbof1 (MGP_PahariEiJ_G0029701) #30 Rnf113a2 (MGP_PahariEiJ_G0029702) Aldh6a1 (MGP_PahariEiJ_G0029703) #31 MGP_PahariEiJ_G0029704 #32 Vsx2 (MGP_PahariEiJ_G0029705) #33 Abcd4 (MGP_PahariEiJ_G0029706) #34 Vrtn (MGP_PahariEiJ_G0029707) #35 Syndig1l (MGP_PahariEiJ_G0029708) #36 Rat MODERN SPECIES 16 Zfyve1 (ENSRNOG00000008614) #12 Rbm25 (ENSRNOG00000002874) Psen1 (ENSRNOG00000009110) #15 Papln (ENSRNOG00000009448) #16 Numb (ENSRNOG00000009653) #17 Heatr4 (ENSRNOG00000038183) #19 Riox1 (ENSRNOG00000010126) #18 Acot2 (ENSRNOG00000010134) ##20 Acot1 (ENSRNOG00000055221) ##20 Acot4 (ENSRNOG00000046864) #20 Acot3 (ENSRNOG00000027960) ##20 ENSRNOG00000067599 Acot5 (ENSRNOG00000032508) ##20 Acot3 (ENSRNOG00000053460) ##20 Acot6 (ENSRNOG00000029637) ##20 Dnal1 (ENSRNOG00000042333) #22 Pnma1 (ENSRNOG00000010553) #23 Mideas (ENSRNOG00000010653) #24 Ptgr2 (ENSRNOG00000038166) #25 Zfp410 (ENSRNOG00000010985) #26 Fam161b (ENSRNOG00000011112) #27 Coq6 (ENSRNOG00000011164) #28 Entpd5 (ENSRNOG00000033206) #29 Bbof1 (ENSRNOG00000011376) #30 Rnf113a2 (ENSRNOG00000067995) Aldh6a1 (ENSRNOG00000011419) #31 Lin52 (ENSRNOG00000043441) #32 Vsx2 (ENSRNOG00000011918) #33 Abcd4 (ENSRNOG00000011964) #34 Vrtn (ENSRNOG00000048378) #35 Syndig1l (ENSRNOG00000027645) #36 Cricetidae ANCESTRAL SPECIES 17 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.a ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.b.b ##20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Cricetinae ANCESTRAL SPECIES 11 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00900000143211 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.a ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.b.b ##20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Golden Hamster MODERN SPECIES 835 Acot4 (ENSMAUG00000012492) #20 ENSMAUG00000020834 ##20 Acot5 (ENSMAUG00000020838) ##20 Acot6 (ENSMAUG00000019222) ##20 Dnal1 (ENSMAUG00000017147) #22 Pnma1 (ENSMAUG00000017335) #23 Mideas (ENSMAUG00000018194) #24 Ptgr2 (ENSMAUG00000010550) #25 Zfp410 (ENSMAUG00000018652) #26 Fam161b (ENSMAUG00000001201) #27 Coq6 (ENSMAUG00000011130) #28 Entpd5 (ENSMAUG00000014342) #29 Bbof1 (ENSMAUG00000012362) #30 Aldh6a1 (ENSMAUG00000016891) #31 Lin52 (ENSMAUG00000011456) #32 Vsx2 (ENSMAUG00000017695) #33 Abcd4 (ENSMAUG00000011789) #34 ENSMAUG00000017258 #35 Syndig1l (ENSMAUG00000013945) #36 Npc2 (ENSMAUG00000020689) #37 Chinese hamster chok1gshd MODERN SPECIES 2 Papln (ENSCGRG00001003202) #16 ENSCGRG00001000963 Numb (ENSCGRG00001016054) #17 ENSCGRG00001014450 ENSCGRG00001010571 ENSCGRG00001011878 Riox1 (ENSCGRG00001010518) #18 Heatr4 (ENSCGRG00001008018) #19 ENSCGRG00001005504 ##20 ENSCGRG00001000843 ##20 Acot4 (ENSCGRG00001007771) #20 ENSCGRG00001011559 ##20 ENSCGRG00001023275 ##20 ENSCGRG00001020145 ##20 Acot6 (ENSCGRG00001019681) ##20 Dnal1 (ENSCGRG00001016988) #22 Pnma1 (ENSCGRG00001010465) #23 Mideas (ENSCGRG00001021773) #24 Ptgr2 (ENSCGRG00001015947) #25 Zfp410 (ENSCGRG00001014072) #26 Fam161b (ENSCGRG00001024553) #27 Coq6 (ENSCGRG00001024043) #28 Entpd5 (ENSCGRG00001021581) #29 Bbof1 (ENSCGRG00001001301) #30 Aldh6a1 (ENSCGRG00001024154) #31 Lin52 (ENSCGRG00001023668) #32 Vsx2 (ENSCGRG00001023191) #33 Abcd4 (ENSCGRG00001022187) #34 Vrtn (ENSCGRG00001013127) #35 Syndig1l (ENSCGRG00001013830) #36 Npc2 (ENSCGRG00001012790) #37 Cricetidae_B ANCESTRAL SPECIES 18 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.a ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.a.a.c.b.b ##20 ENSGT01010000222336.a.a.a.ob.a.a.c.a.a ##20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Prairie vole MODERN SPECIES Rbm25 (ENSMOCG00000001935) ENSMOCG00000005921 Psen1 (ENSMOCG00000009775) #15 ENSMOCG00000005015 Papln (ENSMOCG00000001461) #16 Numb (ENSMOCG00000022280) #17 Riox1 (ENSMOCG00000007570) #18 Heatr4 (ENSMOCG00000015139) #19 ENSMOCG00000005730 ##20 ENSMOCG00000021013 ENSMOCG00000005600 ##20 Acot4 (ENSMOCG00000013343) #20 ENSMOCG00000018416 ##20 Acot5 (ENSMOCG00000000977) ##20 Acot6 (ENSMOCG00000004025) ##20 Dnal1 (ENSMOCG00000022267) #22 Pnma1 (ENSMOCG00000006996) #23 Mideas (ENSMOCG00000019740) #24 Ptgr2 (ENSMOCG00000010724) #25 Zfp410 (ENSMOCG00000017363) #26 Fam161b (ENSMOCG00000001828) #27 Coq6 (ENSMOCG00000006495) #28 Entpd5 (ENSMOCG00000020144) #29 Bbof1 (ENSMOCG00000001378) #30 Aldh6a1 (ENSMOCG00000018307) #31 Lin52 (ENSMOCG00000017855) #32 Vsx2 (ENSMOCG00000020119) #33 Abcd4 (ENSMOCG00000022046) #34 Vrtn (ENSMOCG00000011795) #35 Syndig1l (ENSMOCG00000013518) #36 Npc2 (ENSMOCG00000013949) #37 Northern American deer mouse MODERN SPECIES 5 Dcaf4 (ENSPEMG00000009925) #11 Zfyve1 (ENSPEMG00000008691) #12 Rbm25 (ENSPEMG00000008001) Psen1 (ENSPEMG00000006667) #15 Papln (ENSPEMG00000000670) #16 Numb (ENSPEMG00000018950) #17 Riox1 (ENSPEMG00000018431) #18 Heatr4 (ENSPEMG00000010857) #19 ENSPEMG00000011640 ##20 ENSPEMG00000007692 ##20 Acot4 (ENSPEMG00000024969) #20 ENSPEMG00000009464 ##20 ENSPEMG00000007003 ##20 Acot6 (ENSPEMG00000020726) ##20 ENSPEMG00000027213 ENSPEMG00000030670 #22 ENSPEMG00000025553 Pnma1 (ENSPEMG00000001767) #23 Mideas (ENSPEMG00000020623) #24 Ptgr2 (ENSPEMG00000020776) #25 Zfp410 (ENSPEMG00000022416) #26 Fam161b (ENSPEMG00000021215) #27 Coq6 (ENSPEMG00000020368) #28 Entpd5 (ENSPEMG00000023217) #29 Bbof1 (ENSPEMG00000020680) #30 Aldh6a1 (ENSPEMG00000021209) #31 Lin52 (ENSPEMG00000016158) #32 Vsx2 (ENSPEMG00000014515) #33 Abcd4 (ENSPEMG00000021386) #34 Vrtn (ENSPEMG00000020660) #35 Syndig1l (ENSPEMG00000030499) #36 Kangaroo rat MODERN SPECIES 321 ENSDORG00000023931 Rgs6 (ENSDORG00000015367) #9 Dpf3 (ENSDORG00000007820) #10 Dcaf4 (ENSDORG00000002888) #11 Zfyve1 (ENSDORG00000015230) #12 Rbm25 (ENSDORG00000013247) Psen1 (ENSDORG00000001780) #15 Papln (ENSDORG00000007325) #16 Numb (ENSDORG00000007326) #17 Riox1 (ENSDORG00000028870) #18 Heatr4 (ENSDORG00000005873) #19 ENSDORG00000013571 ##20 ENSDORG00000005537 ##20 ENSDORG00000013097 ##20 ENSDORG00000000064 ##20 Dnal1 (ENSDORG00000015187) #22 ENSDORG00000025611 ##23 Mideas (ENSDORG00000015681) #24 Ptgr2 (ENSDORG00000024075) #25 Zfp410 (ENSDORG00000009293) #26 Fam161b (ENSDORG00000009295) #27 Coq6 (ENSDORG00000009297) #28 ENSDORG00000001878 #29 Rnf113a2 (ENSDORG00000027624) ENSDORG00000005218 #30 Aldh6a1 (ENSDORG00000005224) #31 Lin52 (ENSDORG00000025156) #32 Vsx2 (ENSDORG00000010911) #33 Abcd4 (ENSDORG00000010912) #34 Vrtn (ENSDORG00000010914) #35 Syndig1l (ENSDORG00000014474) #36 Rodentia_A ANCESTRAL SPECIES 2 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.b #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Sciuridae ANCESTRAL SPECIES 8 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.b #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402.f #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Marmotini ANCESTRAL SPECIES 27 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.b #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.m ##20 ENSGT01010000222336.a.a.a.ob.a.a.c.b.n ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402.f #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Alpin marmot MODERN SPECIES 1 PCNX1 (ENSMMMG00000015257) SIPA1L1 (ENSMMMG00000015319) #8 RGS6 (ENSMMMG00000015497) #9 DPF3 (ENSMMMG00000015579) #10 ENSMMMG00000015602 #11 ZFYVE1 (ENSMMMG00000015623) #12 RBM25 (ENSMMMG00000015650) PSEN1 (ENSMMMG00000015676) #15 PAPLN (ENSMMMG00000015699) #16 NUMB (ENSMMMG00000015813) #17 RIOX1 (ENSMMMG00000015975) #18 ENSMMMG00000015982 ##20 ENSMMMG00000015989 ##20 ENSMMMG00000015998 ##20 ENSMMMG00000016020 ##20 DNAL1 (ENSMMMG00000016024) #22 PNMA1 (ENSMMMG00000016038) #23 MIDEAS (ENSMMMG00000016040) #24 PTGR2 (ENSMMMG00000016067) #25 ENSMMMG00000016079 ZNF410 (ENSMMMG00000016081) #26 FAM161B (ENSMMMG00000016102) #27 COQ6 (ENSMMMG00000016120) #28 ENTPD5 (ENSMMMG00000016134) #29 BBOF1 (ENSMMMG00000016213) #30 ALDH6A1 (ENSMMMG00000016229) #31 LIN52 (ENSMMMG00000016244) #32 VSX2 (ENSMMMG00000016247) #33 ABCD4 (ENSMMMG00000016264) #34 VRTN (ENSMMMG00000016304) #35 SYNDIG1L (ENSMMMG00000016305) #36 Marmotini_b ANCESTRAL SPECIES 31 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.b #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b.m ##20 ENSGT01010000222336.a.a.a.ob.a.a.c.b.n ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402.f #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 Squirrel MODERN SPECIES 88 SIPA1L1 (ENSSTOG00000010105) #8 RGS6 (ENSSTOG00000013412) #9 DPF3 (ENSSTOG00000011091) #10 ENSSTOG00000020210 #11 ZFYVE1 (ENSSTOG00000011109) #12 RBM25 (ENSSTOG00000011117) PSEN1 (ENSSTOG00000003845) #15 PAPLN (ENSSTOG00000003857) #16 ENSSTOG00000003900 #17 RIOX1 (ENSSTOG00000024278) #18 HEATR4 (ENSSTOG00000007745) #19 ENSSTOG00000032187 ##20 ENSSTOG00000003345 ##20 ACOT4 (ENSSTOG00000003338) #20 ACOT6 (ENSSTOG00000003091) ##20 DNAL1 (ENSSTOG00000000420) #22 ENSSTOG00000029464 PNMA1 (ENSSTOG00000000422) #23 MIDEAS (ENSSTOG00000000423) #24 PTGR2 (ENSSTOG00000008590) #25 ZNF410 (ENSSTOG00000024235) #26 FAM161B (ENSSTOG00000029202) #27 COQ6 (ENSSTOG00000016439) #28 ENTPD5 (ENSSTOG00000008069) #29 ENSSTOG00000008087 #30 ALDH6A1 (ENSSTOG00000028534) #31 LIN52 (ENSSTOG00000029773) #32 VSX2 (ENSSTOG00000008114) #33 ABCD4 (ENSSTOG00000009827) #34 VRTN (ENSSTOG00000021434) #35 SYNDIG1L (ENSSTOG00000007981) #36 Arctic ground squirrel MODERN SPECIES 8 PCNX1 (ENSUPAG00010015898) SIPA1L1 (ENSUPAG00010015844) #8 RGS6 (ENSUPAG00010015605) #9 DPF3 (ENSUPAG00010015555) #10 ENSUPAG00010015527 #11 ZFYVE1 (ENSUPAG00010015501) #12 RBM25 (ENSUPAG00010015461) PSEN1 (ENSUPAG00010015426) #15 PAPLN (ENSUPAG00010015337) #16 NUMB (ENSUPAG00010015200) #17 RIOX1 (ENSUPAG00010015192) #18 ENSUPAG00010015167 #19 ENSUPAG00010015131 ##20 ACOT4 (ENSUPAG00010015117) #20 ACOT6 (ENSUPAG00010015106) ##20 DNAL1 (ENSUPAG00010015067) #22 PNMA1 (ENSUPAG00010015061) #23 MIDEAS (ENSUPAG00010014994) #24 ENSUPAG00010014987 PTGR2 (ENSUPAG00010014963) #25 ZNF410 (ENSUPAG00010014867) #26 FAM161B (ENSUPAG00010014838) #27 COQ6 (ENSUPAG00010014809) #28 ENTPD5 (ENSUPAG00010014644) #29 BBOF1 (ENSUPAG00010014608) #30 ALDH6A1 (ENSUPAG00010014582) #31 LIN52 (ENSUPAG00010014569) #32 VSX2 (ENSUPAG00010014562) #33 ABCD4 (ENSUPAG00010014503) #34 VRTN (ENSUPAG00010014491) #35 SYNDIG1L (ENSUPAG00010014486) #36 Eurasian red squirrel MODERN SPECIES 11 DPF3 (ENSSVLG00005008293) #10 ENSSVLG00005008049 #11 ZFYVE1 (ENSSVLG00005007958) #12 RBM25 (ENSSVLG00005007885) PSEN1 (ENSSVLG00005007728) #15 PAPLN (ENSSVLG00005007348) #16 NUMB (ENSSVLG00005007168) #17 RIOX1 (ENSSVLG00005007089) #18 ENSSVLG00005007042 #19 ENSSVLG00005007000 ##20 ENSSVLG00005006975 ENSSVLG00005006698 ##20 ENSSVLG00005006583 ACOT4 (ENSSVLG00005006548) #20 ENSSVLG00005006522 ##20 DNAL1 (ENSSVLG00005006438) #22 PNMA1 (ENSSVLG00005006415) #23 MIDEAS (ENSSVLG00005006379) #24 PTGR2 (ENSSVLG00005006327) #25 ZNF410 (ENSSVLG00005006231) #26 FAM161B (ENSSVLG00005006140) #27 COQ6 (ENSSVLG00005006026) #28 ENTPD5 (ENSSVLG00005005845) #29 BBOF1 (ENSSVLG00005005756) #30 ALDH6A1 (ENSSVLG00005005600) #31 ENSSVLG00005005569 ENSSVLG00005005534 #32 VSX2 (ENSSVLG00005005496) #33 ABCD4 (ENSSVLG00005005450) #34 VRTN (ENSSVLG00005005435) #35 SYNDIG1L (ENSSVLG00005005404) #36 Hystricomorpha ANCESTRAL SPECIES 33 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.a #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Hystricomorpha_a ANCESTRAL SPECIES 27 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.a #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT01030000234522.C.b.e.b.a.a.a #23 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00390000016292.g.a.b ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 Guinea pig MODERN SPECIES 20 ENSCPOG00000033708 SIPA1L1 (ENSCPOG00000013071) #8 RGS6 (ENSCPOG00000007309) #9 DPF3 (ENSCPOG00000007322) #10 ENSCPOG00000013878 #11 ZFYVE1 (ENSCPOG00000013880) #12 RBM25 (ENSCPOG00000002479) PSEN1 (ENSCPOG00000035027) #15 PAPLN (ENSCPOG00000019279) #16 NUMB (ENSCPOG00000034984) #17 RIOX1 (ENSCPOG00000024797) #18 ENSCPOG00000038505 ##20 HEATR4 (ENSCPOG00000001833) #19 ACOT4 (ENSCPOG00000036993) #20 ACOT6 (ENSCPOG00000032534) ##20 DNAL1 (ENSCPOG00000010655) #22 PNMA1 (ENSCPOG00000010657) #23 MIDEAS (ENSCPOG00000010659) #24 PTGR2 (ENSCPOG00000027073) #25 ZNF410 (ENSCPOG00000009601) #26 FAM161B (ENSCPOG00000040022) #27 COQ6 (ENSCPOG00000009610) #28 ENTPD5 (ENSCPOG00000009621) #29 ENSCPOG00000015588 #30 RNF113A (ENSCPOG00000038517) ALDH6A1 (ENSCPOG00000000015) #31 LIN52 (ENSCPOG00000003170) #32 VSX2 (ENSCPOG00000003172) #33 ABCD4 (ENSCPOG00000004776) #34 VRTN (ENSCPOG00000038635) #35 SYNDIG1L (ENSCPOG00000012367) #36 Hystricomorpha_b ANCESTRAL SPECIES 46 ENSGT00940000157417 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005.a #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a.c.b ##20 ENSGT01010000222336.a.a.a.ob.a.b #20 ENSGT01010000222336.a.a.a.ob.b ##20 ENSGT00390000016904 #22 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 ENSGT00390000005700 Long-tailed chinchilla MODERN SPECIES 230 RGS6 (ENSCLAG00000004860) #9 DPF3 (ENSCLAG00000004345) #10 ENSCLAG00000004165 #11 ZFYVE1 (ENSCLAG00000004097) #12 RBM25 (ENSCLAG00000003977) PSEN1 (ENSCLAG00000005284) #15 PAPLN (ENSCLAG00000004775) #16 ENSCLAG00000004464 #17 ENSCLAG00000004315 RIOX1 (ENSCLAG00000004260) #18 HEATR4 (ENSCLAG00000004180) #19 ENSCLAG00000004124 ##20 ACOT4 (ENSCLAG00000004063) #20 ENSCLAG00000004019 ##20 ENSCLAG00000003947 ##20 DNAL1 (ENSCLAG00000003917) #22 MIDEAS (ENSCLAG00000003802) #24 PTGR2 (ENSCLAG00000003701) #25 ZNF410 (ENSCLAG00000003640) #26 FAM161B (ENSCLAG00000003575) #27 COQ6 (ENSCLAG00000003521) #28 ENTPD5 (ENSCLAG00000003418) #29 ENSCLAG00000003357 #30 ALDH6A1 (ENSCLAG00000003304) #31 LIN52 (ENSCLAG00000003236) #32 VSX2 (ENSCLAG00000006640) #33 ABCD4 (ENSCLAG00000006557) #34 VRTN (ENSCLAG00000006514) #35 SYNDIG1L (ENSCLAG00000006492) #36 NPC2 (ENSCLAG00000006435) #37 ISCA2 (ENSCLAG00000006410) Naked mole-rat female MODERN SPECIES 18 ENSHGLG00000047889 ZFYVE1 (ENSHGLG00000015923) #12 ENSHGLG00000035871 ENSHGLG00000014745 PSEN1 (ENSHGLG00000044979) #15 PAPLN (ENSHGLG00000013495) #16 ENSHGLG00000017752 #17 ENSHGLG00000039431 ENSHGLG00000039363 ENSHGLG00000049066 #19 RIOX1 (ENSHGLG00000034391) #18 ENSHGLG00000047596 ##20 ENSHGLG00000048609 ACOT6 (ENSHGLG00000040633) ##20 ENSHGLG00000013635 DNAL1 (ENSHGLG00000013059) #22 PNMA1 (ENSHGLG00000050390) #23 MIDEAS (ENSHGLG00000012075) #24 PTGR2 (ENSHGLG00000009670) #25 ZNF410 (ENSHGLG00000008562) #26 FAM161B (ENSHGLG00000007604) #27 COQ6 (ENSHGLG00000006532) #28 ENTPD5 (ENSHGLG00000044767) #29 ENSHGLG00000045022 ALDH6A1 (ENSHGLG00000008121) #31 LIN52 (ENSHGLG00000045214) #32 VSX2 (ENSHGLG00000010609) #33 ABCD4 (ENSHGLG00000019040) #34 SYNDIG1L (ENSHGLG00000013920) #36 NPC2 (ENSHGLG00000013107) #37 ISCA2 (ENSHGLG00000049377) Lagomorpha ANCESTRAL SPECIES 25 ENSGT00940000155944 #8 ENSGT00940000157159 #9 ENSGT00940000159153 #10 ENSGT00390000009546 #11 ENSGT00390000016097 #12 ENSGT00730000111019 ENSGT00940000158751 #15 ENSGT00940000156891 #16 ENSGT00940000156005 #17 ENSGT00390000000083.a #18 ENSGT00390000013207 #19 ENSGT01010000222336.a.a.a.ob.a.a ##20 ENSGT00390000016904 #22 ENSGT00940000157459 #24 ENSGT00940000156793 #25 ENSGT00940000158098 #26 ENSGT00940000159998 #27 ENSGT00390000015152 #28 ENSGT01100000263540.A.b #29 ENSGT00940000154427.A #30 ENSGT00940000156110 #31 ENSGT00390000008402 #32 ENSGT00940000157776 #33 ENSGT00950000182955.a.a.b #34 ENSGT00390000007874 #35 ENSGT00950000183147.A.a #36 ENSGT00390000006223 #37 ENSGT00390000005700 Rabbit MODERN SPECIES 12 RGS6 (ENSOCUG00000000341) #9 ENSOCUG00000031853 DPF3 (ENSOCUG00000016740) #10 ENSOCUG00000009405 #11 ZFYVE1 (ENSOCUG00000008398) #12 RBM25 (ENSOCUG00000013737) PSEN1 (ENSOCUG00000014545) #15 PAPLN (ENSOCUG00000010681) #16 NUMB (ENSOCUG00000010702) #17 ENSOCUG00000031673 RIOX1 (ENSOCUG00000021858) #18 HEATR4 (ENSOCUG00000005994) #19 ENSOCUG00000030890 ENSOCUG00000022543 #20 ENSOCUG00000029229 ##20 DNAL1 (ENSOCUG00000007284) #22 MIDEAS (ENSOCUG00000007290) #24 PTGR2 (ENSOCUG00000006785) #25 ZNF410 (ENSOCUG00000006787) #26 FAM161B (ENSOCUG00000006791) #27 COQ6 (ENSOCUG00000006799) #28 ENSOCUG00000006803 #29 BBOF1 (ENSOCUG00000017487) #30 ALDH6A1 (ENSOCUG00000025121) #31 LIN52 (ENSOCUG00000017491) #32 VSX2 (ENSOCUG00000017496) #33 ABCD4 (ENSOCUG00000003484) #34 VRTN (ENSOCUG00000027081) #35 SYNDIG1L (ENSOCUG00000015989) #36 ENSOCUG00000035144 NPC2 (ENSOCUG00000014067) #37 Pika MODERN SPECIES 595 DNAL1 (ENSOPRG00000010636) #22 ENSOPRG00000010648 Tree shrew MODERN SPECIES 4705 HEATR4 (ENSTBEG00000009463) #19 ENSTBEG00000002703 ##20 DNAL1 (ENSTBEG00000003484) #22 ENSTBEG00000004924