Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000002793 #7	ENSGT00940000156039 #8	ENSGT00390000007747 #9	ENSGT00940000161014 #10	ENSGT00950000182839.B.a.a #11	ENSGT00950000182825.B #12	ENSGT00910000144343 #13	ENSGT00940000155871 #14	ENSGT00390000001810 #15	ENSGT00390000004708 #16	ENSGT00530000063722.a #17	ENSGT00390000009532.A.d.a #18	ENSGT00940000156122 #19	ENSGT00950000182939.b.a.b #20	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00390000018612.a.b #28	ENSGT00390000012501 #29	ENSGT00390000014507.a #30	ENSGT00940000157013 #31	ENSGT00390000014894 #32	ENSGT00510000048671 #33	ENSGT01080000257336.b.e.b.a.b.b.e.b.a #34	ENSGT01080000257336.b.e.b.a.b.b.e.a.b ##34	ENSGT01080000257336.b.e.b.a.b.b.e.a.a #36	ENSGT01080000257336.b.e.b.a.b.b.e.b.b #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000018003.b	ENSGT00390000002793 #7	ENSGT00940000156039 #8	ENSGT00390000007747 #9	ENSGT00940000161014 #10	ENSGT00950000182839.B.a.a #11	ENSGT00910000144343 #13	ENSGT00940000155871 #14	ENSGT00390000001810 #15	ENSGT00390000004708 #16	ENSGT00530000063722.a #17	ENSGT00390000009532.A.d.a #18	ENSGT00940000156122 #19	ENSGT00950000182939.b.a.b #20	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00390000018612.a.b #28	ENSGT00390000012501 #29	ENSGT00390000014507.a #30	ENSGT00940000157013 #31	ENSGT00390000014894 #32	ENSGT00510000048671 #33	ENSGT01080000257336.b.e.b.a.b.b.e.b.a #34	ENSGT01080000257336.b.e.b.a.b.b.e.a.b ##34	ENSGT01080000257336.b.e.b.a.b.b.e.a.a #36	ENSGT01080000257336.b.e.b.a.b.b.e.b.b #37
Mus_C	ANCESTRAL SPECIES	29	ENSGT00390000018003.b	ENSGT00390000002793 #7	ENSGT00940000156039 #8	ENSGT00390000007747 #9	ENSGT00940000161014 #10	ENSGT00950000182839.B.a.a #11	ENSGT00910000144343 #13	ENSGT00940000155871 #14	ENSGT00390000001810 #15	ENSGT00390000004708 #16	ENSGT00530000063722.a #17	ENSGT00390000009532.A.d.a #18	ENSGT00940000156122 #19	ENSGT00950000182939.b.a.b #20	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00390000018612.a.b #28	ENSGT00390000012501 #29	ENSGT00390000014507.a #30	ENSGT00940000157013 #31	ENSGT00390000014894 #32	ENSGT00510000048671 #33	ENSGT01080000257336.b.e.b.a.b.b.e.b.a #34	ENSGT01080000257336.b.e.b.a.b.b.e.a.b ##34	ENSGT01080000257336.b.e.b.a.b.b.e.a.a #36	ENSGT01080000257336.b.e.b.a.b.b.e.b.b #37
spretus	MODERN SPECIES	15	Ints13 (MGP_SPRETEiJ_G0030109) #7	Itpr2 (MGP_SPRETEiJ_G0030108) #8	Sspn (MGP_SPRETEiJ_G0030107) #9	Bhlhe41 (MGP_SPRETEiJ_G0030106) #10	Rassf8 (MGP_SPRETEiJ_G0030105) #11	MGP_SPRETEiJ_G0030104 #12	Lmntd1 (MGP_SPRETEiJ_G0030103) #13	Kras (MGP_SPRETEiJ_G0030102) #14	Etfrf1 (MGP_SPRETEiJ_G0030101) #15	Casc1 (MGP_SPRETEiJ_G0030100) #16	Irag2 (MGP_SPRETEiJ_G0030099) #17	Bcat1 (MGP_SPRETEiJ_G0030098) #18	Sox5 (MGP_SPRETEiJ_G0030097) #19	Etnk1 (MGP_SPRETEiJ_G0030096) #20	C2cd5 (MGP_SPRETEiJ_G0030095) #21	St8sia1 (MGP_SPRETEiJ_G0030094) #22	Sult6b2 (MGP_SPRETEiJ_G0030093) #23	Cmas (MGP_SPRETEiJ_G0030092) #24	Abcc9 (MGP_SPRETEiJ_G0030091) #25	Kcnj8 (MGP_SPRETEiJ_G0030090) #26	Ldhb (MGP_SPRETEiJ_G0030089) #27	Gys2 (MGP_SPRETEiJ_G0030088) #28	Spx (MGP_SPRETEiJ_G0030087) #29	Golt1b (MGP_SPRETEiJ_G0030086) #30	Recql (MGP_SPRETEiJ_G0030085) #31	Pyroxd1 (MGP_SPRETEiJ_G0030084) #32	Iapp (MGP_SPRETEiJ_G0030083) #33	MGP_SPRETEiJ_G0030082 #34	MGP_SPRETEiJ_G0030081 #35	MGP_SPRETEiJ_G0030080 #36	Slco1a1 (MGP_SPRETEiJ_G0030079) #37
Steppe mouse	MODERN SPECIES	3152													Etnk1 (ENSMSIG00000021958) #20	C2cd5 (ENSMSIG00000020817) #21	ENSMSIG00000020782	St8sia1 (ENSMSIG00000020772) #22	Sult6b2 (ENSMSIG00000020758) #23	Cmas (ENSMSIG00000020738) #24	Abcc9 (ENSMSIG00000019881) #25	Kcnj8 (ENSMSIG00000019868) #26	Ldhb (ENSMSIG00000019827) #27	Gys2 (ENSMSIG00000019806) #28	ENSMSIG00000019767 #29	Golt1b (ENSMSIG00000019749) #30	Recql (ENSMSIG00000019632) #31	Pyroxd1 (ENSMSIG00000019613) #32	Iapp (ENSMSIG00000019607) #33	Slco1a5 (ENSMSIG00000019548) #34	Slco1a6 (ENSMSIG00000019523) ##34	Gm6614 (ENSMSIG00000019429) #36	Slco1a1 (ENSMSIG00000019360) #37
Mouse	MODERN SPECIES	15	Ints13 (ENSMUSG00000040250) #7	Itpr2 (ENSMUSG00000030287) #8	Sspn (ENSMUSG00000030255) #9	Bhlhe41 (ENSMUSG00000030256) #10	Rassf8 (ENSMUSG00000030259) #11	Tuba3b (ENSMUSG00000067338) #12	Lmntd1 (ENSMUSG00000054966) #13	Kras (ENSMUSG00000030265) #14	Etfrf1 (ENSMUSG00000040370) #15	Casc1 (ENSMUSG00000043541) #16	Irag2 (ENSMUSG00000030263) #17	Bcat1 (ENSMUSG00000030268) #18	Sox5 (ENSMUSG00000041540) #19	Etnk1 (ENSMUSG00000030275) #20	C2cd5 (ENSMUSG00000030279) #21	St8sia1 (ENSMUSG00000030283) #22	Sult6b2 (ENSMUSG00000048473) #23	Cmas (ENSMUSG00000030282) #24	Abcc9 (ENSMUSG00000030249) #25	Kcnj8 (ENSMUSG00000030247) #26	Ldhb (ENSMUSG00000030246) #27	Gys2 (ENSMUSG00000030244) #28	Spx (ENSMUSG00000071112) #29	Golt1b (ENSMUSG00000030245) #30	Recql (ENSMUSG00000030243) #31	Pyroxd1 (ENSMUSG00000041671) #32	Iapp (ENSMUSG00000041681) #33	Slco1a5 (ENSMUSG00000063975) #34	Slco1a6 (ENSMUSG00000079262) ##34	Gm6614 (ENSMUSG00000079263) #36	Slco1a1 (ENSMUSG00000041698) #37
Ryukyu mouse	MODERN SPECIES	15	Ints13 (MGP_CAROLIEiJ_G0029054) #7	Itpr2 (MGP_CAROLIEiJ_G0029053) #8	Sspn (MGP_CAROLIEiJ_G0029052) #9	Bhlhe41 (MGP_CAROLIEiJ_G0029051) #10	Rassf8 (MGP_CAROLIEiJ_G0029050) #11	MGP_CAROLIEiJ_G0029049 #12	Lmntd1 (MGP_CAROLIEiJ_G0029048) #13	Kras (MGP_CAROLIEiJ_G0029047) #14	Etfrf1 (MGP_CAROLIEiJ_G0029046) #15	Casc1 (MGP_CAROLIEiJ_G0029045) #16	Irag2 (MGP_CAROLIEiJ_G0029044) #17	Bcat1 (MGP_CAROLIEiJ_G0029043) #18	Sox5 (MGP_CAROLIEiJ_G0029042) #19	Etnk1 (MGP_CAROLIEiJ_G0029041) #20	C2cd5 (MGP_CAROLIEiJ_G0029040) #21	St8sia1 (MGP_CAROLIEiJ_G0029039) #22	Sult6b2 (MGP_CAROLIEiJ_G0029038) #23	Cmas (MGP_CAROLIEiJ_G0029037) #24	Abcc9 (MGP_CAROLIEiJ_G0029036) #25	Kcnj8 (MGP_CAROLIEiJ_G0029035) #26	Ldhb (MGP_CAROLIEiJ_G0029034) #27	Gys2 (MGP_CAROLIEiJ_G0029033) #28	Spx (MGP_CAROLIEiJ_G0029032) #29	Golt1b (MGP_CAROLIEiJ_G0029031) #30	Recql (MGP_CAROLIEiJ_G0029030) #31	Pyroxd1 (MGP_CAROLIEiJ_G0029029) #32	Iapp (MGP_CAROLIEiJ_G0029028) #33	Slco1a5 (MGP_CAROLIEiJ_G0029027) #34	Slco1c1 (MGP_CAROLIEiJ_G0029026) ##34	Pde3a (MGP_CAROLIEiJ_G0029025)	MGP_CAROLIEiJ_G0029024