Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00940000153525.g.a ##27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT01080000257336.b.e.b.a.b.a #34	ENSGT01080000257336.b.e.b.a.a ##36
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00970000193562	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT01080000257336.b.e.b.a.b.a.d #34	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.a.c ##36	ENSGT01080000257336.b.e.b.a.a ##36
Naked mole-rat female	MODERN SPECIES	24	BHLHE41 (ENSHGLG00000036794) #7	RASSF8 (ENSHGLG00000036200) #8	ENSHGLG00000034920 #9	LMNTD1 (ENSHGLG00000005502) #10	KRAS (ENSHGLG00000008775) #11	ENSHGLG00000042649 #12	DNAI7 (ENSHGLG00000017827) #13	LRMP (ENSHGLG00000017644) #14	ENSHGLG00000044797 #15	SOX5 (ENSHGLG00000016643) #16	ENSHGLG00000039682 #17	ENSHGLG00000040973 #18	ETNK1 (ENSHGLG00000011566) #19	ENSHGLG00000034168 #20	C2CD5 (ENSHGLG00000016366) #21	ST8SIA1 (ENSHGLG00000009621) #22	ENSHGLG00000010665 #23	CMAS (ENSHGLG00000006107) #24	ABCC9 (ENSHGLG00000014958) #25	KCNJ8 (ENSHGLG00000015650) #26	Ldhb (ENSHGLG00000044218) #27	ENSHGLG00000034958 #28	GYS2 (ENSHGLG00000016654) #29	ENSHGLG00000034379 #30	GOLT1B (ENSHGLG00000048680) #31	RECQL (ENSHGLG00000009712) #32	ENSHGLG00000010013 #33	ENSHGLG00000048919 #34	ENSHGLG00000017581 #35	ENSHGLG00000011711 #36	ENSHGLG00000013677 #37
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT01080000257336.b.e.b.a.b.a.d #34	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT01080000257336.b.e.b.a.b.a.c ##36	ENSGT01080000257336.b.e.b.a.a ##36
Guinea pig	MODERN SPECIES	28	FGFR1OP2 (ENSCPOG00000030323)	INTS13 (ENSCPOG00000014999)	ENSCPOG00000021778	ITPR2 (ENSCPOG00000012462)	SSPN (ENSCPOG00000033259)	ENSCPOG00000025122 #7	RASSF8 (ENSCPOG00000033532) #8	KRAS (ENSCPOG00000030290) #11	ETFRF1 (ENSCPOG00000010713) #12	DNAI7 (ENSCPOG00000005699) #13	IRAG2 (ENSCPOG00000005690) #14	BCAT1 (ENSCPOG00000003203) #15	SOX5 (ENSCPOG00000015686) #16	ETNK1 (ENSCPOG00000007574) #19	C2CD5 (ENSCPOG00000002611) #21	ST8SIA1 (ENSCPOG00000037768) #22	ENSCPOG00000027285 #23	CMAS (ENSCPOG00000000988) #24	ABCC9 (ENSCPOG00000011536) #25	KCNJ8 (ENSCPOG00000011535) #26	LDHB (ENSCPOG00000034968) #27	GYS2 (ENSCPOG00000014642) #29	SPX (ENSCPOG00000014641) #30	GOLT1B (ENSCPOG00000034137) #31	RECQL (ENSCPOG00000024644) #32	PYROXD1 (ENSCPOG00000010730) #33	ENSCPOG00000007480 #34	ENSCPOG00000011248 #34	ENSCPOG00000009706	IAPP (ENSCPOG00000009711) #37	ENSCPOG00000030932
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.h #27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT01080000257336.b.e.b.a.b.a.d #34	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT01080000257336.b.e.b.a.b.a.c ##36	ENSGT01080000257336.b.e.b.a.a ##36
Degu	MODERN SPECIES	105	ENSODEG00000010321	ENSODEG00000010077	SSPN (ENSODEG00000009793)	BHLHE41 (ENSODEG00000013113) #7	RASSF8 (ENSODEG00000010575) #8	LMNTD1 (ENSODEG00000009925) #10	KRAS (ENSODEG00000010412) #11	DNAI7 (ENSODEG00000009672) #13	IRAG2 (ENSODEG00000010644) #14	BCAT1 (ENSODEG00000009501) #15	ENSODEG00000010044	SOX5 (ENSODEG00000011773) #16	ETNK1 (ENSODEG00000011182) #19	ENSODEG00000010526	C2CD5 (ENSODEG00000010826) #21	ST8SIA1 (ENSODEG00000011649) #22	ENSODEG00000010288 #23	ENSODEG00000019754 #24	ABCC9 (ENSODEG00000011228) #25	KCNJ8 (ENSODEG00000011130) #26	ENSODEG00000010887 ##27	GYS2 (ENSODEG00000012769) #29	SPX (ENSODEG00000010257) #30	ENSODEG00000009224 #31	RECQL (ENSODEG00000010240) #32	PYROXD1 (ENSODEG00000009681) #33	ENSODEG00000009060	Iapp (ENSODEG00000008908) #37	ENSODEG00000009392 ##36	SLCO1C1 (ENSODEG00000009335) ##36	PDE3A (ENSODEG00000009924)
Long-tailed chinchilla	MODERN SPECIES	120	FGFR1OP2 (ENSCLAG00000016939)	INTS13 (ENSCLAG00000015765)	ENSCLAG00000016175	ITPR2 (ENSCLAG00000017155)	SSPN (ENSCLAG00000015681)	ENSCLAG00000015603 #7	RASSF8 (ENSCLAG00000015615) #8	KRAS (ENSCLAG00000016519) #11	ETFRF1 (ENSCLAG00000016238) #12	DNAI7 (ENSCLAG00000017034) #13	IRAG2 (ENSCLAG00000015233) #14	BCAT1 (ENSCLAG00000016654) #15	SOX5 (ENSCLAG00000014641) #16	ETNK1 (ENSCLAG00000015907) #19	C2CD5 (ENSCLAG00000016952) #21	ST8SIA1 (ENSCLAG00000016736) #22	ENSCLAG00000015890 #23	CMAS (ENSCLAG00000016228) #24	ABCC9 (ENSCLAG00000017154) #25	KCNJ8 (ENSCLAG00000016808) #26	LDHB (ENSCLAG00000016258) #27	GYS2 (ENSCLAG00000016640) #29	SPX (ENSCLAG00000015491) #30	GOLT1B (ENSCLAG00000016474) #31	RECQL (ENSCLAG00000014618) #32	PYROXD1 (ENSCLAG00000014373) #33	ENSCLAG00000016286 #34	IAPP (ENSCLAG00000015413) #37	SLCO1A2 (ENSCLAG00000016340) #36	ENSCLAG00000016555 ##36	SLCO1C1 (ENSCLAG00000016483) ##36
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b.f #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.g.a ##27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT01080000257336.b.e.b.a.b.a #34	ENSGT01080000257336.b.e.b.a.a ##36	ENSGT00940000156628
Marmotini	ANCESTRAL SPECIES	19	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b.f #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.g.a ##27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT01080000257336.b.e.b.a.b.a #34	ENSGT01080000257336.b.e.b.a.a ##36	ENSGT00940000156628
Marmotini_b	ANCESTRAL SPECIES	57	ENSGT00970000193562	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014 #7	ENSGT00950000182839.B.a.a #8	ENSGT00910000144343 #10	ENSGT00940000155871 #11	ENSGT00390000001810 #12	ENSGT00390000004708 #13	ENSGT00530000063722.a #14	ENSGT00390000009532.A.d.a #15	ENSGT00940000156122 #16	ENSGT00950000182939.b.a.b.f #19	ENSGT00390000000212 #21	ENSGT01030000234535.D #22	ENSGT00940000163137 #23	ENSGT00390000004237 #24	ENSGT00940000156680.b.b #25	ENSGT00990000203615.a.a.b #26	ENSGT00940000153525.g.a ##27	ENSGT00390000018612.a.b #29	ENSGT00390000012501 #30	ENSGT00390000014507.a #31	ENSGT00940000157013 #32	ENSGT00390000014894 #33	ENSGT00510000048671 #37	ENSGT01080000257336.b.e.b.a.b.b #36	ENSGT01080000257336.b.e.b.a.b.a #34	ENSGT01080000257336.b.e.b.a.a ##36	ENSGT00940000156628
Arctic ground squirrel	MODERN SPECIES	100	INTS13 (ENSUPAG00010015517)	ITPR2 (ENSUPAG00010015598)	SSPN (ENSUPAG00010015841)	BHLHE41 (ENSUPAG00010015854) #7	RASSF8 (ENSUPAG00010015858) #8	ENSUPAG00010015875 #10	KRAS (ENSUPAG00010015896) #11	ETFRF1 (ENSUPAG00010015915) #12	DNAI7 (ENSUPAG00010015919) #13	IRAG2 (ENSUPAG00010016042) #14	BCAT1 (ENSUPAG00010016309) #15	SOX5 (ENSUPAG00010016337) #16	ETNK1 (ENSUPAG00010016592) #19	ENSUPAG00010016617	C2CD5 (ENSUPAG00010016638) #21	ST8SIA1 (ENSUPAG00010017820) #22	ENSUPAG00010017832 #23	CMAS (ENSUPAG00010017844) #24	ABCC9 (ENSUPAG00010017855) #25	KCNJ8 (ENSUPAG00010018390) #26
Squirrel	MODERN SPECIES	148	ENSSTOG00000025972	ITPR2 (ENSSTOG00000015423)	SSPN (ENSSTOG00000021227)	ENSSTOG00000021007 #7	RASSF8 (ENSSTOG00000022027) #8	LMNTD1 (ENSSTOG00000005098) #10	ENSSTOG00000026226	KRAS (ENSSTOG00000009530) #11	ETFRF1 (ENSSTOG00000024945) #12	DNAI7 (ENSSTOG00000009509) #13	IRAG2 (ENSSTOG00000026727) #14	ENSSTOG00000004938 #15	SOX5 (ENSSTOG00000000100) #16	ETNK1 (ENSSTOG00000008379) #19	C2CD5 (ENSSTOG00000004906) #21	ST8SIA1 (ENSSTOG00000009654) #22	ENSSTOG00000022477 #23	CMAS (ENSSTOG00000010303) #24	ABCC9 (ENSSTOG00000001507) #25	KCNJ8 (ENSSTOG00000001502) #26	ENSSTOG00000022058 ##27	GYS2 (ENSSTOG00000006383) #29	SPX (ENSSTOG00000006364) #30	GOLT1B (ENSSTOG00000006352) #31	RECQL (ENSSTOG00000006328) #32	PYROXD1 (ENSSTOG00000023758) #33	IAPP (ENSSTOG00000027273) #37	ENSSTOG00000003535 #36	ENSSTOG00000031927 #34	SLCO1C1 (ENSSTOG00000002270) ##36	PDE3A (ENSSTOG00000002257)
Alpin marmot	MODERN SPECIES	52	INTS13 (ENSMMMG00000018473)	ITPR2 (ENSMMMG00000018276)	SSPN (ENSMMMG00000018260)	ENSMMMG00000018244 #8	ENSMMMG00000018222	LMNTD1 (ENSMMMG00000018217) #10	KRAS (ENSMMMG00000018194) #11	ETFRF1 (ENSMMMG00000018182) #12	DNAI7 (ENSMMMG00000018140) #13	IRAG2 (ENSMMMG00000018125) #14	BCAT1 (ENSMMMG00000018101) #15	SOX5 (ENSMMMG00000018035) #16	ENSMMMG00000018020	ETNK1 (ENSMMMG00000017995) #19	C2CD5 (ENSMMMG00000017591) #21	ST8SIA1 (ENSMMMG00000017575) #22	ENSMMMG00000017562 #23	CMAS (ENSMMMG00000017554) #24	ABCC9 (ENSMMMG00000016950) #25	KCNJ8 (ENSMMMG00000016941) #26	ENSMMMG00000016940	ENSMMMG00000016937 ##27	GYS2 (ENSMMMG00000016925) #29	SPX (ENSMMMG00000016909) #30	GOLT1B (ENSMMMG00000016903) #31	RECQL (ENSMMMG00000016879) #32	PYROXD1 (ENSMMMG00000016869) #33	IAPP (ENSMMMG00000016866) #37	SLCO1A2 (ENSMMMG00000016821) #36	ENSMMMG00000016797 #34	SLCO1C1 (ENSMMMG00000016753) ##36
Eurasian red squirrel	MODERN SPECIES	14	ITPR2 (ENSSVLG00005014004)	SSPN (ENSSVLG00005013638)	BHLHE41 (ENSSVLG00005013568) #7	ENSSVLG00005013521	RASSF8 (ENSSVLG00005013368) #8	LMNTD1 (ENSSVLG00005013266) #10	KRAS (ENSSVLG00005013177) #11	ETFRF1 (ENSSVLG00005013055) #12	DNAI7 (ENSSVLG00005012568) #13	ENSSVLG00005012187 #14	BCAT1 (ENSSVLG00005012012) #15	SOX5 (ENSSVLG00005011483) #16	ENSSVLG00005011366	ETNK1 (ENSSVLG00005011233) #19	C2CD5 (ENSSVLG00005011062) #21	ST8SIA1 (ENSSVLG00005010944) #22	ENSSVLG00005010892 #23	CMAS (ENSSVLG00005010853) #24	ABCC9 (ENSSVLG00005022831) #25	KCNJ8 (ENSSVLG00005022746) #26	ENSSVLG00005022718 ##27	GYS2 (ENSSVLG00005022607) #29	SPX (ENSSVLG00005022543) #30	GOLT1B (ENSSVLG00005022464) #31	RECQL (ENSSVLG00005022407) #32	PYROXD1 (ENSSVLG00005022365) #33	ENSSVLG00005022328	SLCO1A2 (ENSSVLG00005022163) #36	ENSSVLG00005021498 #34	SLCO1C1 (ENSSVLG00005021232) ##36	ENSSVLG00005021192