Actinopterygii	ANCESTRAL SPECIES	73	ENSGT00940000165200	ENSGT00940000154902	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00940000167863	ENSGT00940000157865	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00940000164531	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000001216 #25
Neopterygii	ANCESTRAL SPECIES	81	ENSGT00940000165200	ENSGT00940000154902	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000157865	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00940000164531	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000001216 #25
Osteoglossocephalai	ANCESTRAL SPECIES	96	ENSGT00940000165200	ENSGT00940000154902	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000157865	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a
Clupeocephala	ANCESTRAL SPECIES	89	ENSGT01030000234573.B.c.b.a	ENSGT00940000159658.a ##8	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a
Otomorpha	ANCESTRAL SPECIES	32	ENSGT00990000203619.A.b.b.b.a.e.k #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000001094 #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33
Clupeiformes	ANCESTRAL SPECIES	35	ENSGT00990000203619.A.b.b.b.a.e.k #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000172304.a.a	ENSGT00390000001094.`b #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000167706
Atlantic herring	MODERN SPECIES	4	mtg1 (ENSCHAG00000004441)	ENSCHAG00000004535	ENSCHAG00000004549	ENSCHAG00000004594	ENSCHAG00000004687	ENSCHAG00000004778	prph2b (ENSCHAG00000004787) #13	UBR2 (ENSCHAG00000004826) #14	ENSCHAG00000008532 #15	prkn (ENSCHAG00000008587) #16	ENSCHAG00000008756 ##17	ENSCHAG00000008773	ENSCHAG00000008781 #19	ncoa4 (ENSCHAG00000008809) #20	yipf3 (ENSCHAG00000008825) #21	LRRC73 (ENSCHAG00000008886) #22	ENSCHAG00000008899 #23	DLK2 (ENSCHAG00000008913) #24	dnph1 (ENSCHAG00000009007) #25	mea1 (ENSCHAG00000009013) #26	ppp2r5d (ENSCHAG00000009027) #27	ENSCHAG00000009156 #28	PPP2R5D (ENSCHAG00000009221) #27	ENSCHAG00000009343 #29	CUL7 (ENSCHAG00000009408) #30	SYNDIG1 (ENSCHAG00000011053) #31	ENSCHAG00000011088 #32	apmap (ENSCHAG00000011098) #33	ENSCHAG00000011129	TMEM26 (ENSCHAG00000011144)	ENSCHAG00000011149
Denticle herring	MODERN SPECIES	18	supv3l1 (ENSDCDG00000030031)	ENSDCDG00000030054	tacr2 (ENSDCDG00000030348)	tspan15 (ENSDCDG00000030351)	rufy2 (ENSDCDG00000030356)	HNRNPH3 (ENSDCDG00000030423)	PBLD (ENSDCDG00000030428)	PBLD (ENSDCDG00000030430)	DNA2 (ENSDCDG00000030432)	ppm1g (ENSDCDG00000030437)	fam120b (ENSDCDG00000030440)	dld (ENSDCDG00000030444)	phf10 (ENSDCDG00000030542)	ncoa4 (ENSDCDG00000013967) #20	yipf3 (ENSDCDG00000013998) #21	LRRC73 (ENSDCDG00000014047) #22	ENSDCDG00000014063 #23	DLK2 (ENSDCDG00000014083) #24	dnph1 (ENSDCDG00000014098) #25	mea1 (ENSDCDG00000014117) #26	ppp2r5d (ENSDCDG00000014346) #27	ENSDCDG00000016753 #28	ENSDCDG00000016765 #29	fam135a (ENSDCDG00000016781)	ENSDCDG00000016803	mettl9 (ENSDCDG00000016807)	itgb3b (ENSDCDG00000016909)	ENSDCDG00000020528	hells (ENSDCDG00000020562)	vax1 (ENSDCDG00000021379)	atp6v1ba (ENSDCDG00000021445)
Otophysi	ANCESTRAL SPECIES		ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00730000112471	ENSGT00390000001094 #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290.c #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b	ENSGT00940000159781.a
Characiphysae	ANCESTRAL SPECIES	92	ENSGT00990000203619.A.b.b.b.a.e.k.b #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00730000112471	ENSGT00390000001094 #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290.c #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b	ENSGT00940000159781.a
Channel catfish	MODERN SPECIES	22	kcng3 (ENSIPUG00000010483) #8	COX7R (ENSIPUG00000010503) #9	ENSIPUG00000010529 #10	eml4 (ENSIPUG00000010577) #11	ENSIPUG00000010820	PKDCC (ENSIPUG00000010826) #12	prph2b (ENSIPUG00000010856) #13	UBR2 (ENSIPUG00000010872) #14	ENSIPUG00000010942 #15	prkn (ENSIPUG00000010969) #16	qki (ENSIPUG00000012637) #17	ENSIPUG00000012656	ENSIPUG00000012658 #19	ncoa4 (ENSIPUG00000012683) #20	yipf3 (ENSIPUG00000012701) #21	lrrc73 (ENSIPUG00000012719) #22	ENSIPUG00000012745 #23	dlk2 (ENSIPUG00000012767) #24	dnph1 (ENSIPUG00000012772) #25	dnph1 (ENSIPUG00000012781) #25	MEA1 (ENSIPUG00000012786) #26	ppp2r5d (ENSIPUG00000012800) #27	ENSIPUG00000012911 #28	ENSIPUG00000012933 #29	CUL7 (ENSIPUG00000012975) #30	syndig1 (ENSIPUG00000013034) #31	ENSIPUG00000013075 #32	apmap (ENSIPUG00000013146) #33	si:zfos-1056e6.1 (ENSIPUG00000013185)	ppm1g (ENSIPUG00000013217)	fam120b (ENSIPUG00000013252)
Characiphysae_b	ANCESTRAL SPECIES	91	ENSGT00990000203619.A.b.b.b.a.e.k.b #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00730000112471	ENSGT00390000001094 #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290.c #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b	ENSGT00940000159781.a
Electric eel	MODERN SPECIES	61	OXER1 (ENSEEEG00000010760) #7	OXER1 (ENSEEEG00000010762) #7	KCNG3 (ENSEEEG00000010765) #8	ENSEEEG00000010766 #10	EML4 (ENSEEEG00000010769) #11	pkdcca (ENSEEEG00000010780) #12	prph2b (ENSEEEG00000010783) #13	UBR2 (ENSEEEG00000010888) #14	prkn (ENSEEEG00000012670) #16	QKI (ENSEEEG00000012672) #17	ENSEEEG00000012674	ENSEEEG00000012676	ENSEEEG00000012679 #19	ncoa4 (ENSEEEG00000012695) #20	yipf3 (ENSEEEG00000012702) #21	LRRC73 (ENSEEEG00000012721) #22	ENSEEEG00000012740 #23	DLK2 (ENSEEEG00000012815) #24	dnph1 (ENSEEEG00000012816) #25	mea1 (ENSEEEG00000012817) #26	ppp2r5d (ENSEEEG00000012859) #27	ENSEEEG00000015045 #28	CUL7 (ENSEEEG00000015057) #30	SYNDIG1 (ENSEEEG00000015099) #31	ENSEEEG00000015101 #32	apmap (ENSEEEG00000015104) #33	ppm1g (ENSEEEG00000015107)	fam120b (ENSEEEG00000015112)	dld (ENSEEEG00000015115)	phf10 (ENSEEEG00000015121)	actr2b (ENSEEEG00000015125)
Characoidei	ANCESTRAL SPECIES	85	ENSGT00990000203619.A.b.b.b.a.e.k.b #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00730000112471	ENSGT00390000001094 #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290.c #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b	ENSGT00940000159781.a
Red-bellied piranha	MODERN SPECIES	15	KCNG3 (ENSPNAG00000004758) #8	COX7A2L (ENSPNAG00000002563) #9	ENSPNAG00000013111 #10	EML4 (ENSPNAG00000013082) #11	pkdcca (ENSPNAG00000002522) #12	prph2b (ENSPNAG00000013015) #13	UBR2 (ENSPNAG00000013002) #14	ENSPNAG00000002457 #15	prkn (ENSPNAG00000002443) #16	ENSPNAG00000012835	QKI (ENSPNAG00000002418) #17	ENSPNAG00000006947	ENSPNAG00000012795 #19	ncoa4 (ENSPNAG00000012778) #20	yipf3 (ENSPNAG00000012759) #21	LRRC73 (ENSPNAG00000012721) #22	ENSPNAG00000012692 #23	DLK2 (ENSPNAG00000012670) #24	dnph1 (ENSPNAG00000012654) #25	mea1 (ENSPNAG00000012647) #26	ppp2r5d (ENSPNAG00000012632) #27	ENSPNAG00000012550 #28	ENSPNAG00000012423	CUL7 (ENSPNAG00000002223) #30	SYNDIG1 (ENSPNAG00000012274) #31	ENSPNAG00000012252 #32	apmap (ENSPNAG00000002173) #33	si:zfos-1056e6.1 (ENSPNAG00000012232)	ppm1g (ENSPNAG00000012199)	fam120b (ENSPNAG00000012134)	dld (ENSPNAG00000007177)
Mexicana tetra	MODERN SPECIES	17	KCNG3 (ENSAMXG00000015014) #8	COX7A2L (ENSAMXG00000029555) #9	ENSAMXG00000043124 #10	EML4 (ENSAMXG00000005023) #11	ENSAMXG00000044011	pkdcca (ENSAMXG00000038060) #12	prph2b (ENSAMXG00000035606) #13	UBR2 (ENSAMXG00000015852) #14	ENSAMXG00000015836 #15	prkn (ENSAMXG00000015822) #16	ENSAMXG00000031914	QKI (ENSAMXG00000015808) #17	ENSAMXG00000041757 #19	ncoa4 (ENSAMXG00000015735) #20	yipf3 (ENSAMXG00000038727) #21	LRRC73 (ENSAMXG00000015706) #22	ENSAMXG00000015682 #23	DLK2 (ENSAMXG00000043523) #24	dnph1 (ENSAMXG00000015630) #25	mea1 (ENSAMXG00000015611) #26	ppp2r5d (ENSAMXG00000015584) #27	ENSAMXG00000043989 #28	ENSAMXG00000044073 #29	mrps6 (ENSAMXG00000026285)	psap (ENSAMXG00000015025)	abcg2c (ENSAMXG00000015075)	SLC29A3 (ENSAMXG00000034120)	c1d (ENSAMXG00000043212)	ENSAMXG00000039404	ENSAMXG00000036122	ENSAMXG00000001158
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e.k #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290.c #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b	ENSGT00940000159781.a
Cyprininae	ANCESTRAL SPECIES	175	ENSGT00390000010899.a.b.b.a.c	ENSGT00990000203619.A.b.b.b.a.e.k.c #7	ENSGT00940000159658.b.b.b #8	ENSGT00940000154815.b.b.g #9	ENSGT00970000193390.c.b.b.b.a.db	ENSGT00390000003039.a #10	ENSGT00940000158434.a #11	ENSGT00390000001205.a.a #12	ENSGT00940000157303.e.b #13	ENSGT00950000183075.a.a.a.a.t #14	ENSGT00910000144630.a #15	ENSGT00940000155310.a.b.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000008403.b #20	ENSGT00940000153766.A.d #21	ENSGT00390000003256 #22	ENSGT00940000164045.b #23	ENSGT00940000160761.g #24	ENSGT00390000001216 #25	ENSGT00390000016927.a #26	ENSGT01030000234620.a.a.a.b.r #27	ENSGT00390000000614.b #28	ENSGT00390000016950.mb.a	ENSGT00940000154457.b	ENSGT00940000160203.d	ENSGT00940000153954.p.b #30	ENSGT00950000183147.B.j #31	ENSGT00940000160277.h #32	ENSGT00440000039984.a.g #33	ENSGT00940000177578	ENSGT00940000158427.k
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	31	OXER1 (ENSCARG00000059790) #7	KCNG3 (ENSCARG00000059822) #8	COX7A2L (ENSCARG00000059836) #9	ENSCARG00000059866 #10	EML4 (ENSCARG00000060034) #11	ENSCARG00000061005	pkdcca (ENSCARG00000061017) #12	prph2b (ENSCARG00000061037) #13	UBR2 (ENSCARG00000061393) #14	prkn (ENSCARG00000063999) #16	QKI (ENSCARG00000064432) #17	ENSCARG00000064461	ENSCARG00000064475 #19	ncoa4 (ENSCARG00000064498) #20	yipf3 (ENSCARG00000064521) #21	LRRC73 (ENSCARG00000064574) #22	ENSCARG00000064608 #23	DLK2 (ENSCARG00000064613) #24	dnph1 (ENSCARG00000064617) #25	mea1 (ENSCARG00000064621) #26	ppp2r5d (ENSCARG00000064665) #27	ENSCARG00000065862 #28	ENSCARG00000065869	tuba4l (ENSCARG00000065884)	ENSCARG00000065953 #30	SYNDIG1 (ENSCARG00000066665) #31	ENSCARG00000066672 #32	apmap (ENSCARG00000066697) #33	ppm1g (ENSCARG00000066740)	fam120b (ENSCARG00000066832)	dld (ENSCARG00000066882)
Goldfish	MODERN SPECIES	4	COX7A2L (ENSCARG00000006474) #9	ENSCARG00000006488	ENSCARG00000006497 #10	EML4 (ENSCARG00000006561) #11	pkdcca (ENSCARG00000006984) #12	ENSCARG00000007009	prph2b (ENSCARG00000007020) #13	UBR2 (ENSCARG00000007195) #14	ENSCARG00000009731 #15	ENSCARG00000009737	ENSCARG00000009740	QKI (ENSCARG00000009745) #17	ENSCARG00000009754	ncoa4 (ENSCARG00000009756) #20	YIPF3 (ENSCARG00000009765) #21	LRRC73 (ENSCARG00000009783) #22	ENSCARG00000009795 #23	ENSCARG00000009797	DLK2 (ENSCARG00000009800) #24	ENSCARG00000009802	mea1 (ENSCARG00000009803) #26	ppp2r5d (ENSCARG00000009835) #27	ENSCARG00000010248 #28	ENSCARG00000010256	ENSCARG00000010295	ENSCARG00000010365 #30	SYNDIG1 (ENSCARG00000012249) #31	ENSCARG00000012253 #32	apmap (ENSCARG00000012259) #33	ppm1g (ENSCARG00000012296)	ENSCARG00000012381
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00390000013008.b	ENSGT00990000203619.A.b.b.b.a.e.k.d #7	ENSGT00940000159658.b.b.a #8	ENSGT00940000154815.b.b.h #9	ENSGT00390000003039.b #10	ENSGT00940000158434.b #11	ENSGT00390000001205.a.b #12	ENSGT00940000157303.e.a #13	ENSGT00950000183075.a.a.a.a.s #14	ENSGT00390000011034.jd #16	ENSGT00940000155310.a.b.a #17	ENSGT00940000172304.a.a	ENSGT00390000001094.cb #19	ENSGT00390000008403.a #20	ENSGT00940000153766.A.c.a #21	ENSGT00390000003256.k #22	ENSGT00940000164045.b #23	ENSGT00940000160761.g #24	ENSGT00390000001216 #25	ENSGT00390000016927.a #26	ENSGT01030000234620.a.a.a.b.r #27	ENSGT00390000000614.b #28	ENSGT00390000016950.mb.a	ENSGT00940000154457.b	ENSGT00940000160203.d	ENSGT00940000153954.p.b #30	ENSGT00950000183147.B.j #31	ENSGT00940000160277.h #32	ENSGT00440000039984.a.g #33	ENSGT00940000177578	ENSGT00940000158427.k
Common carp reference	MODERN SPECIES	48	ENSCCRG00000065973	ENSCCRG00000067672	KCNG3 (ENSCCRG00000069780) #8	COX7A2L (ENSCCRG00000024155) #9	ENSCCRG00000068640 #10	EML4 (ENSCCRG00000019370) #11	pkdcca (ENSCCRG00000053025) #12	prph2b (ENSCCRG00000008643) #13	ENSCCRG00000006695 #14	prkn (ENSCCRG00000048867) #16	ENSCCRG00000076786 #17	ENSCCRG00000072566	ENSCCRG00000076016 #19	ncoa4 (ENSCCRG00000043940) #20	yipf3 (ENSCCRG00000043721) #21	ENSCCRG00000014478 #22	ENSCCRG00000074224 #23	DLK2 (ENSCCRG00000014151) #24	dnph1 (ENSCCRG00000014149) #25	mea1 (ENSCCRG00000014142) #26	ppp2r5d (ENSCCRG00000017599) #27	ENSCCRG00000076445 #28	ENSCCRG00000041623	ENSCCRG00000064864	ENSCCRG00000032904	ENSCCRG00000006858 #30	SYNDIG1 (ENSCCRG00000009239) #31	ENSCCRG00000066381 #32	apmap (ENSCCRG00000078269) #33	si:zfos-1056e6.1 (ENSCCRG00000066192)	ppm1g (ENSCCRG00000038969)
Golden-line barbel	MODERN SPECIES	1008											QKI (ENSSGRG00000045239) #17	ENSSGRG00000045238	ENSSGRG00000045197 #19	ncoa4 (ENSSGRG00000045196) #20	yipf3 (ENSSGRG00000044869) #21	LRRC73 (ENSSGRG00000044851) #22	ENSSGRG00000044850 #23	dnph1 (ENSSGRG00000044849) #25	dnph1 (ENSSGRG00000044848) #25
Cyprininae_a	ANCESTRAL SPECIES	216	ENSGT00990000203619.A.b.b.b.a.e.k.c #7	ENSGT00940000159658.b.b.b #8	ENSGT00940000154815.b.b.g #9	ENSGT00970000193390.c.b.b.b.a.db	ENSGT00390000003039.a #10	ENSGT00940000158434.a #11	ENSGT00390000001205.a.a #12	ENSGT00940000157303.e.b #13	ENSGT00950000183075.a.a.a.a.t #14	ENSGT00910000144630.a #15	ENSGT00390000011034.kd #16	ENSGT00940000155310.a.b.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000008403.b #20	ENSGT00940000153766.A.d #21	ENSGT00390000003256.l #22	ENSGT00940000164045.a #23	ENSGT00940000160761.h #24	ENSGT00390000016927.b #26	ENSGT01030000234620.a.a.a.b.q #27	ENSGT00390000000614.a #28	ENSGT00940000168290.c #29	ENSGT00390000016950.mb.b	ENSGT00940000164832.e.b	ENSGT00940000153954.p.a #30	ENSGT00950000183147.B.i #31	ENSGT00940000160277.g #32	ENSGT00440000039984.a.h #33	ENSGT00940000158427.l
Golden-line barbel	MODERN SPECIES	696											QKI (ENSSGRG00000011011) #17	ENSSGRG00000011019	ENSSGRG00000011022	ncoa4 (ENSSGRG00000011026) #20	yipf3 (ENSSGRG00000011043) #21	ENSSGRG00000011124 #22	ENSSGRG00000011125 #23	DLK2 (ENSSGRG00000011126) #24	ENSSGRG00000011127	mea1 (ENSSGRG00000011128) #26	ppp2r5d (ENSSGRG00000011173) #27	ENSSGRG00000011621 #28	ENSSGRG00000011624 #29	tuba4l (ENSSGRG00000011625)	ENSSGRG00000011825 #30	ENSSGRG00000012347 #30	SYNDIG1 (ENSSGRG00000012348) #31	ENSSGRG00000012349 #32	apmap (ENSSGRG00000012350) #33	ppm1g (ENSSGRG00000012354)
Common carp reference	MODERN SPECIES	18	pkdcca (ENSCCRG00000053568) #12	prph2b (ENSCCRG00000066421) #13	ENSCCRG00000078898 #10	ENSCCRG00000027386 #14	ENSCCRG00000079610 #15	prkn (ENSCCRG00000034834) #16	ENSCCRG00000053169	ENSCCRG00000054522	ENSCCRG00000074474	ENSCCRG00000058357	ENSCCRG00000060502	ENSCCRG00000072209 #17	ENSCCRG00000043120 #18	ncoa4 (ENSCCRG00000025315) #20	yipf3 (ENSCCRG00000014201) #21	ENSCCRG00000025345 #22	ENSCCRG00000025346 #23	DLK2 (ENSCCRG00000075423) #24	mea1 (ENSCCRG00000032060) #26	ppp2r5d (ENSCCRG00000013598) #27	ENSCCRG00000053139 #28	ENSCCRG00000032909	ENSCCRG00000006806	ENSCCRG00000009151 #30	SYNDIG1 (ENSCCRG00000052830) #31	ENSCCRG00000043207 #32	APMAP (ENSCCRG00000044787) #33	ppm1g (ENSCCRG00000023864)	dld (ENSCCRG00000063931)	phf10 (ENSCCRG00000038504)	actr2b (ENSCCRG00000038495)
Zebrafish	MODERN SPECIES	4	ENSDARG00000074653	XPO5 (ENSDARG00000098868)	ENSDARG00000112522	wu:fj16a03 (ENSDARG00000100952) #10	EML4 (ENSDARG00000109443) #11	pkdcca (ENSDARG00000035161) #12	prph2b (ENSDARG00000014840) #13	UBR2 (ENSDARG00000070164) #14	ENSDARG00000031278 #15	prkn (ENSDARG00000021555) #16	QKI (ENSDARG00000002026) #17	ENSDARG00000104860	ENSDARG00000100375 #19	ncoa4 (ENSDARG00000021439) #20	yipf3 (ENSDARG00000020449) #21	LRRC73 (ENSDARG00000063411) #22	ENSDARG00000010681 #23	DLK2 (ENSDARG00000076247) #24	dnph1 (ENSDARG00000075730) #25	mea1 (ENSDARG00000039820) #26	ppp2r5d (ENSDARG00000014428) #27	ENSDARG00000090054 #28	ENSDARG00000089355	sft2d1 (ENSDARG00000007362)	PRR18 (ENSDARG00000093768)	ENSDARG00000094016	TBXT (ENSDARG00000039806)	pde10a (ENSDARG00000003449)	c1d (ENSDARG00000021112)	pla2g12b (ENSDARG00000015662)	OIT3 (ENSDARG00000087227)
Euteleosteomorpha	ANCESTRAL SPECIES	33	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e #7	ENSGT00940000159658.b.b #8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000172797	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Protacanthopterygii	ANCESTRAL SPECIES	39	ENSGT00390000010899.a.b.b.a	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000155965.a.b	ENSGT01030000234576.D.a.a.b.b #18	ENSGT00390000001094.z #19	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000172797	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	82											ENSGT00940000155310.a.b.c.a #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT01060000249975	ENSGT00390000008403.d #20	ENSGT00940000153766.A.j #21	ENSGT00390000003256.c #22	ENSGT00940000164045.e #23	ENSGT00940000160761.a #24	ENSGT00390000016927.c #26	ENSGT01030000234620.a.a.a.b.p #27	ENSGT00390000000614.d #28	ENSGT00940000168290.a #29	ENSGT00940000172797	ENSGT00940000153954.vb #30	ENSGT00950000183147.B.e.a #31	ENSGT00940000160277.d #32	ENSGT00440000039984.a.f #33	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT01000000220547
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00390000013008.g	ENSGT00990000203619.A.b.b.b.a.e.j #7	ENSGT00940000159658.b.b.d #8	ENSGT00940000154815.b.b.f.a.a #9	ENSGT00940000158434.d.a #11	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c #12	ENSGT00940000157303.e.g #13	ENSGT00950000183075.a.a.a.a.r #14	ENSGT00990000210314	ENSGT00940000155310.a.b.c.a #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT01060000249975	ENSGT00390000008403.d #20	ENSGT00940000153766.A.j #21	ENSGT00390000003256.c #22	ENSGT00940000164045.e #23	ENSGT00940000160761.a #24	ENSGT00390000016927.c #26	ENSGT01030000234620.a.a.a.b.p #27	ENSGT00390000000614.d #28	ENSGT00940000168290.a #29	ENSGT00940000153954.vb #30	ENSGT00950000183147.B.e.a #31	ENSGT00940000160277.d #32	ENSGT00440000039984.a.f #33	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT00660000095541.a.a.l	ENSGT01050000244965.a.b.g
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000154815.b.b.f.a.a #9	ENSGT00940000164656.b.b.a.a.a.a.`b.a	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039.f #10	ENSGT00940000158434.d.a #11	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c #12	ENSGT00940000157303.e.g #13	ENSGT00950000183075.a.a.a.a.r #14	ENSGT00990000210314	ENSGT01060000251565	ENSGT00940000155310.a.b.c.a #17	ENSGT01030000234576.D.a.a.b.b.g #18	ENSGT00390000008403.d #20	ENSGT00940000153766.A.j #21	ENSGT00390000003256.c #22	ENSGT00940000164045.e #23	ENSGT00940000160761.a #24	ENSGT00390000016927.c #26	ENSGT01030000234620.a.a.a.b.p #27	ENSGT00390000000614.d #28	ENSGT00940000168290.a #29	ENSGT00940000153954.vb #30	ENSGT00950000183147.B.e.a #31	ENSGT00940000160277.d #32	ENSGT00440000039984.a.f #33	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT00660000095541.a.a.l	ENSGT01050000244965.a.b.g
Atlantic salmon	MODERN SPECIES		ENSSSAG00000001448 #10	EML4 (ENSSSAG00000040250) #11	ENSSSAG00000027035	ENSSSAG00000028365	pkdcc (ENSSSAG00000028618) #12	ENSSSAG00000109094	prph2b (ENSSSAG00000104476) #13	ENSSSAG00000032452 #14	ENSSSAG00000055884	ENSSSAG00000055889	ENSSSAG00000059951 #17	ENSSSAG00000094772	ENSSSAG00000107433 #18	ncoa4 (ENSSSAG00000055914) #20	yipf3 (ENSSSAG00000055922) #21	ENSSSAG00000121854 #22	ENSSSAG00000091674 #23	DLK2 (ENSSSAG00000106977) #24	mea1 (ENSSSAG00000055949) #26	ppp2r5d (ENSSSAG00000086741) #27	ENSSSAG00000100637	ENSSSAG00000112746 #28	ENSSSAG00000109034	ENSSSAG00000059158 #29	ENSSSAG00000059225 #30	ENSSSAG00000062430 #31	apmap (ENSSSAG00000062463) #33	ENSSSAG00000062552	VSX1 (ENSSSAG00000062565)	enp6 (ENSSSAG00000062635)	ENSSSAG00000062699
River trout	MODERN SPECIES	9	ENSSTUG00000012553	ENSSTUG00000012561	ENSSTUG00000012570 #10	EML4 (ENSSTUG00000012648) #11	ENSSTUG00000013848	pkdcca (ENSSTUG00000013852) #12	prph2b (ENSSTUG00000013857) #13	UBR2 (ENSSTUG00000013917) #14	ENSSTUG00000015192	ENSSTUG00000015210	ENSSTUG00000015213	QKI (ENSSTUG00000015221) #17	ENSSTUG00000015253 #18	ncoa4 (ENSSTUG00000015261) #20	yipf3 (ENSSTUG00000015288) #21	LRRC73 (ENSSTUG00000015414) #22	ENSSTUG00000024881 #23	DLK2 (ENSSTUG00000024891) #24	mea1 (ENSSTUG00000024902) #26	ppp2r5d (ENSSTUG00000024928) #27	ENSSTUG00000025492 #28	ENSSTUG00000025511 #29	ENSSTUG00000025613 #30	SYNDIG1 (ENSSTUG00000028413) #31	CST7 (ENSSTUG00000028429) #32	apmap (ENSSTUG00000028444) #33	ENSSTUG00000028481	vsx1 (ENSSTUG00000028490)	entpd6 (ENSSTUG00000028521)	ENSSTUG00000028578	ninl (ENSSTUG00000028594)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00390000003039.f #10	ENSGT00940000158434.d.b.b #11	ENSGT00940000158434.d.a #11	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c #12	ENSGT00940000157303.e.g #13	ENSGT00950000183075.a.a.a.a.r #14	ENSGT00390000011034.sc.a.b #16	ENSGT00940000155310.a.b.d #17	ENSGT00990000210314	ENSGT00940000155310.a.b.c.a #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT01060000249975	ENSGT00390000008403.d #20	ENSGT00940000153766.A.j #21	ENSGT00390000003256.c #22	ENSGT00940000164045.e #23	ENSGT00940000160761.a #24	ENSGT00390000016927.c #26	ENSGT01030000234620.a.a.a.b.p #27	ENSGT00970000196788.I	ENSGT00390000000614.d #28	ENSGT00940000168290.a #29	ENSGT00940000153954.vb #30	ENSGT00950000183147.B.e.a #31	ENSGT00940000160277.d #32	ENSGT00440000039984.a.f #33	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT01000000220547
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000159658.b.b.d #8	ENSGT00940000154815.b.b.f.b #9	ENSGT00390000003039.f #10	ENSGT00940000158434.d.b.b #11	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c #12	ENSGT00940000157303.e.g #13	ENSGT00950000183075.a.a.a.a.r #14	ENSGT00390000011034.sc.a.b #16	ENSGT00990000210314	ENSGT00940000155310.a.b.c.a #17	ENSGT01030000234576.D.a.a.b.b #18	ENSGT01060000249975	ENSGT00390000008403.d #20	ENSGT00940000153766.A.j #21	ENSGT00390000003256.c #22	ENSGT00940000164045.e #23	ENSGT00940000160761.a #24	ENSGT00390000016927.c #26	ENSGT01030000234620.a.a.a.b.p #27	ENSGT00970000196788.I	ENSGT00390000000614.d #28	ENSGT00940000168290.a #29	ENSGT00940000153954.vb #30	ENSGT00950000183147.B.e.a #31	ENSGT00940000160277.d #32	ENSGT00440000039984.a.f #33	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT00660000095541.a.a.l
Chinook salmon	MODERN SPECIES		haao (ENSOTSG00005027868)	OXER1 (ENSOTSG00005027870) #7	KCNG3 (ENSOTSG00005027871) #8	COX7A2L (ENSOTSG00005027872) #9	ENSOTSG00005027874	EML4 (ENSOTSG00005027887) #11	ENSOTSG00005028668	pkdcca (ENSOTSG00005028669) #12	prph2b (ENSOTSG00005028670) #13	UBR2 (ENSOTSG00005028752) #14	prkn (ENSOTSG00005037121) #16	ENSOTSG00005037122 #18	ENSOTSG00005037123	ncoa4 (ENSOTSG00005037124) #20	yipf3 (ENSOTSG00005000175) #21	LRRC73 (ENSOTSG00005000184) #22	ENSOTSG00005000186 #23	ENSOTSG00005000189	DLK2 (ENSOTSG00005000190) #24	mea1 (ENSOTSG00005000191) #26	ppp2r5d (ENSOTSG00005000200) #27	ENSOTSG00005000381	ENSOTSG00005000383 #28	ENSOTSG00005000388 #29	ENSOTSG00005000433 #30	SYNDIG1 (ENSOTSG00005001516) #31	CST7 (ENSOTSG00005001518) #32	apmap (ENSOTSG00005001520) #33	ENSOTSG00005001525	vsx1 (ENSOTSG00005001527)	entpd6 (ENSOTSG00005001534)
Coho salmon	MODERN SPECIES	2	COX7A2L (ENSOKIG00005004104) #9	ENSOKIG00005004093	ENSOKIG00005004086 #10	EML4 (ENSOKIG00005003765) #11	ENSOKIG00005003700	pkdcca (ENSOKIG00005003689) #12	prph2b (ENSOKIG00005003683) #13	UBR2 (ENSOKIG00005003086) #14	ENSOKIG00005002803 #15	ENSOKIG00005002790	QKI (ENSOKIG00005002772) #17	ENSOKIG00005002759 #18	ENSOKIG00005002735	ncoa4 (ENSOKIG00005002717) #20	yipf3 (ENSOKIG00005002612) #21	LRRC73 (ENSOKIG00005002574) #22	ENSOKIG00005002559 #23	DLK2 (ENSOKIG00005002543) #24	mea1 (ENSOKIG00005002530) #26	ppp2r5d (ENSOKIG00005002191) #27	ENSOKIG00005002026	ENSOKIG00005002009 #28	ENSOKIG00005001964 #29	ENSOKIG00005049278 #30	SYNDIG1 (ENSOKIG00005049150) #31	CST7 (ENSOKIG00005049146) #32	APMAP (ENSOKIG00005049139) #33	ENSOKIG00005049138	vsx1 (ENSOKIG00005049133)	entpd6 (ENSOKIG00005049122)	ENSOKIG00005049111
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000012449 #9	ENSOMYG00000012471	ENSOMYG00000012476	EML4 (ENSOMYG00000013339) #11	ENSOMYG00000064175	ENSOMYG00000064619	pkdcca (ENSOMYG00000025394) #12	prph2b (ENSOMYG00000025420) #13	ENSOMYG00000026458 #14	ENSOMYG00000031909 #16	ENSOMYG00000073233 #17	ENSOMYG00000031975 #18	ENSOMYG00000032001	ncoa4 (ENSOMYG00000032024) #20	yipf3 (ENSOMYG00000032086) #21	ENSOMYG00000032182 #22	ENSOMYG00000032186 #23	DLK2 (ENSOMYG00000032195) #24	ENSOMYG00000048363	mea1 (ENSOMYG00000032200) #26	ppp2r5d (ENSOMYG00000032657) #27	ENSOMYG00000035933	ENSOMYG00000056739 #28	ENSOMYG00000039523 #29	ENSOMYG00000063719	ENSOMYG00000036358 #30	SYNDIG1 (ENSOMYG00000039560) #31	CST7 (ENSOMYG00000039577) #32	APMAP (ENSOMYG00000039623) #33	ENSOMYG00000039660	VSX1 (ENSOMYG00000039674)
Huchen	MODERN SPECIES	122										QKI (ENSHHUG00000036308) #17	ENSHHUG00000036304 #18	ENSHHUG00000036238	ncoa4 (ENSHHUG00000036221) #20	ENSHHUG00000036220	yipf3 (ENSHHUG00000036178) #21	LRRC73 (ENSHHUG00000036163) #22	ENSHHUG00000036153 #23	DLK2 (ENSHHUG00000036147) #24	mea1 (ENSHHUG00000036141) #26	ppp2r5d (ENSHHUG00000034937) #27	ENSHHUG00000034918 #28	ENSHHUG00000034908 #29	ENSHHUG00000034903	ENSHHUG00000034867 #30	SYNDIG1 (ENSHHUG00000034857) #31	CST7 (ENSHHUG00000034852) #32	apmap (ENSHHUG00000034770) #33	ENSHHUG00000034749	vsx1 (ENSHHUG00000034739)	entpd6 (ENSHHUG00000034730)	ENSHHUG00000034726
Salmoninae	ANCESTRAL SPECIES	61	ENSGT00940000154815.b.b.e #9	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039 #10	ENSGT00940000158434.d.b.a.a #11	ENSGT00940000158434.c #11	ENSGT00390000001205.a.d #12	ENSGT00940000157303.e.h #13	ENSGT00950000183075.a.a.a.a.q #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b.c.b #17	ENSGT00940000155965.a.b	ENSGT00390000001094.z #19	ENSGT00390000008403.c #20	ENSGT00940000153766.A.i #21	ENSGT00390000003256.d #22	ENSGT00940000164045.f #23	ENSGT00940000160761.b #24	ENSGT00390000001216 #25	ENSGT00390000016927.d #26	ENSGT01030000234620.a.a.a.b.o #27	ENSGT00390000000614.c #28	ENSGT00940000168290.b #29	ENSGT00940000153954.wb #30	ENSGT00950000183147.B.e.b #31	ENSGT00940000160277.c #32	ENSGT00440000039984.a.e #33	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f	ENSGT00390000018613.a
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00970000193390.c.b.b.b.a.v	ENSGT00390000003039.e #10	ENSGT00940000158434.d.b.a.a #11	ENSGT00390000003738.b.d.a.c.b	ENSGT00940000158434.c #11	ENSGT00390000001205.a.d #12	ENSGT00940000157303.e.h #13	ENSGT00950000183075.a.a.a.a.q #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b.c.b #17	ENSGT00940000155965.a.b	ENSGT00390000001094.z #19	ENSGT00390000008403.c #20	ENSGT00940000153766.A.i #21	ENSGT00390000003256.d #22	ENSGT00940000164045.f #23	ENSGT00940000160761.b #24	ENSGT00390000001216 #25	ENSGT00390000016927.d #26	ENSGT01030000234620.a.a.a.b.o #27	ENSGT00390000000614.c #28	ENSGT00940000168290.b #29	ENSGT00940000153954.wb #30	ENSGT00950000183147.B.e.b #31	ENSGT00940000160277.c #32	ENSGT00440000039984.a.e #33	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f	ENSGT00390000018613.a
Salmo	ANCESTRAL SPECIES	29	ENSGT00940000154815.b.b.f.a.b #9	ENSGT00940000159658.b.b.c #8	ENSGT00390000003039.e #10	ENSGT00940000158434.d.b.a.a #11	ENSGT00390000003738.b.d.a.c.b	ENSGT00390000001205.a.d #12	ENSGT00940000157303.e.h #13	ENSGT00950000183075.a.a.a.a.q #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b.c.b #17	ENSGT00940000155965.a.b	ENSGT00390000001094.z #19	ENSGT00390000008403.c #20	ENSGT00940000153766.A.i #21	ENSGT00390000003256.d #22	ENSGT00940000164045.f #23	ENSGT00940000160761.b #24	ENSGT00390000001216 #25	ENSGT00390000016927.d #26	ENSGT01030000234620.a.a.a.b.o #27	ENSGT00390000000614.c #28	ENSGT00940000153954.wb #30	ENSGT00950000183147.B.e.b #31	ENSGT00940000160277.c #32	ENSGT00440000039984.a.e #33	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f	ENSGT00390000018613.a	ENSGT00950000183148.b.b
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000092433	ENSSSAG00000040155 #10	ENSSSAG00000001809 #11	ENSSSAG00000042405	pkdcca (ENSSSAG00000042416) #12	ENSSSAG00000115091	prph2b (ENSSSAG00000042420) #13	ENSSSAG00000042694 #14	ENSSSAG00000059761 #15	prkn (ENSSSAG00000059829) #16	ENSSSAG00000104512 #17	ENSSSAG00000103008 #18	ENSSSAG00000060440	ncoa4 (ENSSSAG00000060369) #20	yipf3 (ENSSSAG00000060501) #21	lrrc73 (ENSSSAG00000060630) #22	ENSSSAG00000114068	ENSSSAG00000082235 #23	dnph1 (ENSSSAG00000088880) #25	ENSSSAG00000060738 #24	mea1 (ENSSSAG00000105859) #26	ppp2r5d (ENSSSAG00000104067) #27	ENSSSAG00000064135 #29	ENSSSAG00000064201 #30	ENSSSAG00000066860	ENSSSAG00000108668	SYNDIG1 (ENSSSAG00000100580) #31	cst7 (ENSSSAG00000066883) #32	apmap (ENSSSAG00000066899) #33	ACS2L (ENSSSAG00000066956)	vsx1 (ENSSSAG00000067122)
River trout	MODERN SPECIES	35	ENSSTUG00000000529	ENSSTUG00000000521	ENSSTUG00000000518	ENSSTUG00000000515	ENSSTUG00000000360 #11	pkdcca (ENSSTUG00000000338) #12	prph2b (ENSSTUG00000000327) #13	UBR2 (ENSSTUG00000000249) #14	ENSSTUG00000015199 #15	prkn (ENSSTUG00000015138) #16	QKI (ENSSTUG00000015110) #17	ENSSTUG00000015102	ENSSTUG00000015061 #19	ncoa4 (ENSSTUG00000015035) #20	yipf3 (ENSSTUG00000014906) #21	LRRC73 (ENSSTUG00000014884) #22	ENSSTUG00000014877 #23	DLK2 (ENSSTUG00000014856) #24	dnph1 (ENSSTUG00000014832) #25	mea1 (ENSSTUG00000014812) #26	ppp2r5d (ENSSTUG00000011009) #27	ENSSTUG00000010904 #28	ENSSTUG00000010014 #30	SYNDIG1 (ENSSTUG00000009973) #31	CST7 (ENSSTUG00000009955) #32	apmap (ENSSTUG00000009921) #33	acss1 (ENSSTUG00000009719)	vsx1 (ENSSTUG00000009691)	entpd6 (ENSSTUG00000009629)	ENSSTUG00000009617	pygb (ENSSTUG00000009517)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00390000003039.e #10	ENSGT00940000158434.d.b.a.a #11	ENSGT00390000003738.b.d.a.c.b	ENSGT00940000158434.c #11	ENSGT00390000001205.a.d #12	ENSGT00940000157303.e.h #13	ENSGT00950000183075.a.a.a.a.q #14	ENSGT00910000144630.a.c #15	ENSGT00390000011034.sc.b #16	ENSGT00390000011034.sc.a.a #16	ENSGT00940000155310.a.b.c.b #17	ENSGT00940000155965.a.b	ENSGT01060000250178	ENSGT00390000008403.c #20	ENSGT00940000153766.A.i #21	ENSGT00390000003256.d #22	ENSGT00940000164045.f #23	ENSGT00940000160761.b #24	ENSGT00390000001216 #25	ENSGT00390000016927.d #26	ENSGT01030000234620.a.a.a.b.o #27	ENSGT00390000000614.c #28	ENSGT00940000168290.b #29	ENSGT00940000153954.wb #30	ENSGT00950000183147.B.e.b #31	ENSGT00940000160277.c #32	ENSGT00440000039984.a.e #33	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f	ENSGT00390000018613.a
Rainbow trout	MODERN SPECIES		wu:fj16a03 (ENSOMYG00000026703) #10	EML4 (ENSOMYG00000027209) #11	ENSOMYG00000028021	pkdcca (ENSOMYG00000028029) #12	ENSOMYG00000076493	prph2b (ENSOMYG00000028036) #13	ENSOMYG00000029138 #14	ENSOMYG00000032251 #15	ENSOMYG00000057207 #16	ENSOMYG00000032282 #16	ENSOMYG00000032319 #17	ENSOMYG00000032332	ENSOMYG00000032351	ncoa4 (ENSOMYG00000032388) #20	yipf3 (ENSOMYG00000032419) #21	ENSOMYG00000032454 #22	ENSOMYG00000032553 #23	DLK2 (ENSOMYG00000032836) #24	dnph1 (ENSOMYG00000032849) #25	mea1 (ENSOMYG00000032857) #26	ppp2r5d (ENSOMYG00000033264) #27	ENSOMYG00000075196 #28	ENSOMYG00000034284 #29	ENSOMYG00000034589 #30	ENSOMYG00000069213	SYNDIG1 (ENSOMYG00000035879) #31	cytf (ENSOMYG00000035889) #32	APMAP (ENSOMYG00000035908) #33	ENSOMYG00000069041	ACSS1 (ENSOMYG00000000284)	vsx1 (ENSOMYG00000000318)
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000166093.e.a	ENSGT01000000220187	ENSGT00940000154649.A.q	ENSGT00390000003039.e #10	ENSGT00940000158434.c #11	ENSGT00390000001205.a.d #12	ENSGT00940000157303.e.h #13	ENSGT00950000183075.a.a.a.a.q #14	ENSGT00910000144630.a.c #15	ENSGT00390000011034.sc.a.a #16	ENSGT00940000155310.a.b.c.b #17	ENSGT00940000155965.a.b	ENSGT01060000250178	ENSGT00390000008403.c #20	ENSGT00940000153766.A.i #21	ENSGT00390000003256.d #22	ENSGT00940000164045.f #23	ENSGT00940000160761.b #24	ENSGT00390000001216 #25	ENSGT00390000016927.d #26	ENSGT01030000234620.a.a.a.b.o #27	ENSGT00390000000614.c #28	ENSGT00940000168290.b #29	ENSGT00940000153954.wb #30	ENSGT00950000183147.B.e.b #31	ENSGT00940000160277.c #32	ENSGT00440000039984.a.e #33	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f	ENSGT00390000018613.a
Coho salmon	MODERN SPECIES	24	ENSOKIG00005000087	ENSOKIG00005000101 #10	EML4 (ENSOKIG00005000244) #11	ENSOKIG00005000342	pkdcca (ENSOKIG00005000349) #12	prph2b (ENSOKIG00005000362) #13	ENSOKIG00005000365	UBR2 (ENSOKIG00005000936) #14	ENSOKIG00005002657 #15	prkn (ENSOKIG00005002719) #16	QKI (ENSOKIG00005002819) #17	ENSOKIG00005002833	ENSOKIG00005002837	ncoa4 (ENSOKIG00005002858) #20	yipf3 (ENSOKIG00005002897) #21	LRRC73 (ENSOKIG00005002943) #22	ENSOKIG00005002951 #23	DLK2 (ENSOKIG00005002962) #24	dnph1 (ENSOKIG00005002975) #25	mea1 (ENSOKIG00005002986) #26	ppp2r5d (ENSOKIG00005003028) #27	ENSOKIG00005003258 #28	ENSOKIG00005003279 #29	ENSOKIG00005003399 #30	SYNDIG1 (ENSOKIG00005003890) #31	CST7 (ENSOKIG00005003894) #32	apmap (ENSOKIG00005003908) #33	acss1 (ENSOKIG00005003938)	ENSOKIG00005003992	vsx1 (ENSOKIG00005003996)	pygb (ENSOKIG00005004087)
Chinook salmon	MODERN SPECIES	30	COX7A2L (ENSOTSG00005020402) #9	ENSOTSG00005020403	ENSOTSG00005020404	ENSOTSG00005020407 #10	EML4 (ENSOTSG00005020413) #11	pkdcca (ENSOTSG00005023311) #12	prph2b (ENSOTSG00005023332) #13	UBR2 (ENSOTSG00005023403) #14	ENSOTSG00005028091 #15	prkn (ENSOTSG00005028093) #16	QKI (ENSOTSG00005028098) #17	ENSOTSG00005028105	ENSOTSG00005028107	ncoa4 (ENSOTSG00005028108) #20	yipf3 (ENSOTSG00005028110) #21	LRRC73 (ENSOTSG00005028111) #22	ENSOTSG00005028115 #23	DLK2 (ENSOTSG00005028150) #24	dnph1 (ENSOTSG00005028160) #25	mea1 (ENSOTSG00005028161) #26	ppp2r5d (ENSOTSG00005028181) #27	ENSOTSG00005031664 #28	ENSOTSG00005031666 #29	ENSOTSG00005031669 #30	SYNDIG1 (ENSOTSG00005031693) #31	CST7 (ENSOTSG00005031696) #32	apmap (ENSOTSG00005031698) #33	acss1 (ENSOTSG00005031722)	vsx1 (ENSOTSG00005031958)	entpd6 (ENSOTSG00005031959)	ENSOTSG00005031961
Huchen	MODERN SPECIES	84				EML4 (ENSHHUG00000035368) #11	pkdcca (ENSHHUG00000035361) #12	prph2b (ENSHHUG00000035358) #13	UBR2 (ENSHHUG00000035325) #14	ENSHHUG00000035310 #15	ENSHHUG00000035307 #15	prkn (ENSHHUG00000035262) #16	QKI (ENSHHUG00000035243) #17	ENSHHUG00000035238	ENSHHUG00000035223 #19	ncoa4 (ENSHHUG00000035199) #20	yipf3 (ENSHHUG00000035164) #21	LRRC73 (ENSHHUG00000035148) #22	ENSHHUG00000035141 #23	DLK2 (ENSHHUG00000035130) #24	dnph1 (ENSHHUG00000035121) #25	mea1 (ENSHHUG00000035117) #26	ppp2r5d (ENSHHUG00000034977) #27	ENSHHUG00000034949 #28	ENSHHUG00000034792 #30	SYNDIG1 (ENSHHUG00000034791) #31	CST7 (ENSHHUG00000034784) #32	acss1 (ENSHHUG00000034737)	vsx1 (ENSHHUG00000034724)	entpd6 (ENSHHUG00000034722)	ENSHHUG00000034720	pygb (ENSHHUG00000033286)	abhd12 (ENSHHUG00000033222)
Northern pike	MODERN SPECIES	5	EML4 (ENSELUG00000016121) #11	ENSELUG00000016176	ENSELUG00000000614	ENSELUG00000033040	pkdcca (ENSELUG00000016230) #12	ENSELUG00000029784	prph2b (ENSELUG00000016256) #13	UBR2 (ENSELUG00000016522) #14	ENSELUG00000016617 #15	prkn (ENSELUG00000016662) #16	QKI (ENSELUG00000016698) #17	ENSELUG00000016707 #18	ENSELUG00000016738 #19	ncoa4 (ENSELUG00000016764) #20	yipf3 (ENSELUG00000016794) #21	LRRC73 (ENSELUG00000016819) #22	ENSELUG00000016871 #23	DLK2 (ENSELUG00000016914) #24	dnph1 (ENSELUG00000016938) #25	mea1 (ENSELUG00000016957) #26	ppp2r5d (ENSELUG00000017007) #27	ENSELUG00000017055 #28	ENSELUG00000017093 #29	CUL7 (ENSELUG00000017179) #30	SYNDIG1 (ENSELUG00000017206) #31	cst7 (ENSELUG00000017246) #32	apmap (ENSELUG00000017302) #33	ENSELUG00000017463	acss1 (ENSELUG00000017505)	ENSELUG00000032087	vsx1 (ENSELUG00000017514)
Acanthomorphata	ANCESTRAL SPECIES	93				ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00390000001205.a #12	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00390000008403 #20	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000172797	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a
Euacanthomorphacea	ANCESTRAL SPECIES	60	ENSGT00940000166409	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00390000001205.a #12	ENSGT00390000003039 #10	ENSGT00940000158434 #11
Percomorphaceae	ANCESTRAL SPECIES	45	ENSGT00940000166409	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00940000154411	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Atherinomorphae	ANCESTRAL SPECIES	41	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000157776.d	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01040000241272	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT01030000236263	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Cyprinodontiformes	ANCESTRAL SPECIES	37	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT01030000236263	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01040000241272	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000157776.d	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01050000244965.a.b	ENSGT00940000155061.a.b.k.a
Cyprinodontoidei	ANCESTRAL SPECIES	40	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT01030000236263	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01040000241272	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000157776.d	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01050000244965.a.b	ENSGT00940000155061.a.b.k.a
NAME_4	ANCESTRAL SPECIES	385												ENSGT00390000000614 #28	ENSGT01040000241272	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1316									ENSCVAG00000019343	ENSCVAG00000019327	ENSCVAG00000019297	ENSCVAG00000019274 #28	ENSCVAG00000019261	ppp2r5d (ENSCVAG00000019255) #27	mea1 (ENSCVAG00000019233) #26	LRRC73 (ENSCVAG00000019226) #22	DLK2 (ENSCVAG00000019189) #24	ENSCVAG00000019146 #23	ENSCVAG00000019122
Sheepshead minnow	MODERN SPECIES	2299																LRRC73 (ENSCVAG00000009730) #22	DLK2 (ENSCVAG00000009744) #24
Mummichog	MODERN SPECIES	1291													ENSFHEG00000010734	ENSFHEG00000010746	ENSFHEG00000010757	LRRC73 (ENSFHEG00000010794) #22	DLK2 (ENSFHEG00000010810) #24
Poeciliinae	ANCESTRAL SPECIES	36	ENSGT00440000039984.a #33	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT01030000236263	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000157776.d	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01050000244965.a.b	ENSGT00940000155061.a.b.k.a	ENSGT00940000164992
Poecilia	ANCESTRAL SPECIES	59	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT01030000236263	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00950000183147.B #31	ENSGT00940000153954.qb.a #30	ENSGT00940000153954.qb.b #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000157776.d	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01050000244965.a.b	ENSGT00940000155061.a.b.k.a	ENSGT00940000164992	ENSGT00390000000854.c.b
NAME_6	ANCESTRAL SPECIES	205	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT01030000236263	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00950000183147.B #31	ENSGT00940000153954.qb.a #30	ENSGT00940000153954.qb.b #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000157776.d	ENSGT01100000263540.A.a	ENSGT00940000167655	ENSGT00940000166409
Amazon molly	MODERN SPECIES	987														ppp2r5d (ENSPFOG00000019057) #27	mea1 (ENSPFOG00000019052) #26	LRRC73 (ENSPFOG00000019048) #22	ENSPFOG00000019044 #24	ENSPFOG00000019035 #23	ACSS1 (ENSPFOG00000023286)	ENSPFOG00000024398	ENSPFOG00000019027	entpd6 (ENSPFOG00000019002)	ENSPFOG00000018993	abhd12 (ENSPFOG00000018983)
Sailfin molly	MODERN SPECIES	2219											ENSPLAG00000004835 #30	ENSPLAG00000004850 #29	ENSPLAG00000004861 #28	ENSPLAG00000004879 #27	mea1 (ENSPLAG00000004890) #26	LRRC73 (ENSPLAG00000004907) #22	ENSPLAG00000004936 #24
Guppy	MODERN SPECIES	445	yipf3 (ENSPREG00000013751) #21	ncoa4 (ENSPREG00000013735) #20	ENSPREG00000013726 #16	ENSPREG00000013710 #15	ENSPREG00000013695 #14	ENSPREG00000013668 #14	prph2b (ENSPREG00000013649) #13	ENSPREG00000013633 #31	ENSPREG00000013619 #30	ENSPREG00000013602 #30	ENSPREG00000013579 #29	ENSPREG00000013569	ENSPREG00000013514 #28	ENSPREG00000013474 #27	mea1 (ENSPREG00000013461) #26	LRRC73 (ENSPREG00000013444) #22	ENSPREG00000013436 #24	ENSPREG00000013417 #23	ENSPREG00000013404	ENSPREG00000013326	entpd6 (ENSPREG00000013227)	ENSPREG00000013155	abhd12 (ENSPREG00000013100)	gins1 (ENSPREG00000012975)	ENSPREG00000012935	AIFM2 (ENSPREG00000012910)	elovl6l (ENSPREG00000012840)	PSD (ENSPREG00000012811)	nfkb2 (ENSPREG00000012699)	glud1a (ENSPREG00000012659)	shld2 (ENSPREG00000012638)
Platyfish	MODERN SPECIES	14	ENSXMAG00000028741	ENSXMAG00000028431	prkn (ENSXMAG00000003878) #16	ENSXMAG00000021413 #15	UBR2 (ENSXMAG00000016386) #14	ENSXMAG00000029313 #14	prph2b (ENSXMAG00000016497) #13	ENSXMAG00000023176 #31	ENSXMAG00000022911 #30	ENSXMAG00000025290 #30	ENSXMAG00000027816	ENSXMAG00000029387 #28	ppp2r5d (ENSXMAG00000016157) #27	ENSXMAG00000027241 #27	mea1 (ENSXMAG00000016153) #26	LRRC73 (ENSXMAG00000029484) #22	DLK2 (ENSXMAG00000024822) #24	ENSXMAG00000016136 #23	ENSXMAG00000029065	vsx1 (ENSXMAG00000016135)	entpd6 (ENSXMAG00000016104)	ENSXMAG00000016102	abhd12 (ENSXMAG00000016077)	gins1 (ENSXMAG00000028009)	ENSXMAG00000027487	AIFM2 (ENSXMAG00000016046)	elovl6l (ENSXMAG00000016034)	ENSXMAG00000022281	ENSXMAG00000014896	nfkb2 (ENSXMAG00000000193)	glud1a (ENSXMAG00000015941)
Aplocheiloidei	ANCESTRAL SPECIES	128	ENSGT00940000178738	ENSGT00440000039984.a #33	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23
Mangrove rivulus	MODERN SPECIES	233			ENSKMAG00000002435	ENSKMAG00000002418 #16	ENSKMAG00000002394 #16	ENSKMAG00000002373 #15	UBR2 (ENSKMAG00000002216) #14	prph2b (ENSKMAG00000002178) #13	ENSKMAG00000002154 #31	CUL7 (ENSKMAG00000000592) #30	ENSKMAG00000000458	ENSKMAG00000000435 #29	ENSKMAG00000000414 #28	ppp2r5d (ENSKMAG00000000343) #27	ENSKMAG00000000323	LRRC73 (ENSKMAG00000000283) #22	ENSKMAG00000000253	ENSKMAG00000000236 #24	ENSKMAG00000000227 #23
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015018999	PRPSAP1 (ENSNFUG00015018893)	grapa (ENSNFUG00015018879)	ENSNFUG00015018876	ENSNFUG00015018875	b9d1 (ENSNFUG00015018872)	ENSNFUG00015018869	ENSNFUG00015018868	ENSNFUG00015018794	ENSNFUG00015018790	GRIN2A (ENSNFUG00015017841)	ENSNFUG00015017798	ENSNFUG00015017758 #29	ENSNFUG00015017747	MEA1 (ENSNFUG00015017739) #26	LRRC73 (ENSNFUG00015017734) #22	DLK2 (ENSNFUG00015017731) #24	ENSNFUG00015017382	KIF20B (ENSNFUG00015017345)	ANKRD1A (ENSNFUG00015017340)	abhd12 (ENSNFUG00015017192)	elovl6l (ENSNFUG00015017173)	gja5b (ENSNFUG00015017168)	ENSNFUG00015017165	EPAS1 (ENSNFUG00015015277)	ENSNFUG00015015105	gfra1a (ENSNFUG00015015093)	ENSNFUG00015015071	si:ch1073-126c3.2 (ENSNFUG00015015052)	ENSNFUG00015015043	ENSNFUG00015015036
Oryzias	ANCESTRAL SPECIES	6	ENSGT00940000164992	ENSGT00390000003133	ENSGT00390000004582.h	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01040000241272	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10	ENSGT00940000156754.a.a
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00940000155061.a.b.k.a	ENSGT00940000164992	ENSGT00390000003133	ENSGT00390000004582.g.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00390000000614 #28	ENSGT01040000241272	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10	ENSGT00940000156754.a.a
Indian medaka	MODERN SPECIES	27	PSD (ENSOMEG00000022477)	nfkb2 (ENSOMEG00000022445)	shld2 (ENSOMEG00000022412)	ENSOMEG00000022382	entpd6 (ENSOMEG00000022360)	vsx1 (ENSOMEG00000022331)	apmap (ENSOMEG00000022324) #33	CST7 (ENSOMEG00000022297) #32	SYNDIG1 (ENSOMEG00000022278) #31	CUL7 (ENSOMEG00000022216) #30	ENSOMEG00000022031	ENSOMEG00000021957 #28	ENSOMEG00000021912	ppp2r5d (ENSOMEG00000021899) #27	mea1 (ENSOMEG00000021885) #26	LRRC73 (ENSOMEG00000021865) #22	DLK2 (ENSOMEG00000021843) #24	ENSOMEG00000021792 #23	dnph1 (ENSOMEG00000021767) #25	yipf3 (ENSOMEG00000021759) #21	ncoa4 (ENSOMEG00000021751) #20	ENSOMEG00000021741	prkn (ENSOMEG00000021728) #16	ENSOMEG00000021681 #15	UBR2 (ENSOMEG00000020662) #14	prph2b (ENSOMEG00000017960) #13	KCNG3 (ENSOMEG00000017940) ##8	tspan14 (ENSOMEG00000017924)	EML4 (ENSOMEG00000017876) #11	ENSOMEG00000017755 #10	ENSOMEG00000017741
Javanese ricefish	MODERN SPECIES	6	ENSOJAG00000006208	ENSOJAG00000007025	ENSOJAG00000007075	AIFM2 (ENSOJAG00000007118)	AIFM2 (ENSOJAG00000007164)	vsx1 (ENSOJAG00000007405)	ENSOJAG00000007450	ENSOJAG00000007489	apmap (ENSOJAG00000007500) #33	CST7 (ENSOJAG00000007531) #32	SYNDIG1 (ENSOJAG00000007544) #31	ENSOJAG00000009229	ENSOJAG00000009253 #28	ppp2r5d (ENSOJAG00000009323) #27	mea1 (ENSOJAG00000009565) #26	LRRC73 (ENSOJAG00000009578) #22	ENSOJAG00000009601 #24	ENSOJAG00000009635 #23	dnph1 (ENSOJAG00000009647) #25	yipf3 (ENSOJAG00000009663) #21	ncoa4 (ENSOJAG00000009677) #20	ENSOJAG00000009756	prkn (ENSOJAG00000009769) #16	ENSOJAG00000009844 #15	prph2b (ENSOJAG00000009923) #13	KCNG3 (ENSOJAG00000009932) ##8	tspan14 (ENSOJAG00000009951)	EML4 (ENSOJAG00000010190) #11	ENSOJAG00000012745 #10	ENSOJAG00000012753	ENSOJAG00000012768
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT01050000244965.a.b	ENSGT00940000155061.a.b.k.a	ENSGT00940000164992	ENSGT00390000003133	ENSGT00390000004582.h	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10	ENSGT00940000156754.a.a	ENSGT00390000005203
Japanese Medaka HdrR	MODERN SPECIES	6	shld2 (ENSORLG00000002947)	ENSORLG00000022188	ENSORLG00000027267	AIFM2 (ENSORLG00000002975)	entpd6 (ENSORLG00000002995)	vsx1 (ENSORLG00000002999)	apmap (ENSORLG00000003030) #33	CST7 (ENSORLG00000024898) #32	SYNDIG1 (ENSORLG00000003047) #31	CUL7 (ENSORLG00000003116) #30	ENSORLG00000023888	ENSORLG00000003131 #29	ENSORLG00000026208 #28	ppp2r5d (ENSORLG00000003171) #27	mea1 (ENSORLG00000003180) #26	LRRC73 (ENSORLG00000003187) #22	ENSORLG00000003193 #24	ENSORLG00000003209 #23	dnph1 (ENSORLG00000003216) #25	ENSORLG00000026021	ENSORLG00000029764	yipf3 (ENSORLG00000003250) #21	ncoa4 (ENSORLG00000003269) #20	ENSORLG00000026680	prkn (ENSORLG00000029510) #16	ENSORLG00000025354 #15	UBR2 (ENSORLG00000003350) #14	ENSORLG00000003361 #13	KCNG3 (ENSORLG00000003367) ##8	tspan14 (ENSORLG00000003423)	EML4 (ENSORLG00000003456) #11
Chinese medaka	MODERN SPECIES	1044													ENSOSIG00000008482 #28	ppp2r5d (ENSOSIG00000006572) #27	mea1 (ENSOSIG00000006519) #26	LRRC73 (ENSOSIG00000006518) #22	DLK2 (ENSOSIG00000006516) #24	ENSOSIG00000006515 #23	ncoa4 (ENSOSIG00000006459) #20	prkn (ENSOSIG00000006343) #16	ENSOSIG00000006337 #15	prph2b (ENSOSIG00000006223) #13	KCNG3 (ENSOSIG00000006217) ##8	tspan14 (ENSOSIG00000006216)	EML4 (ENSOSIG00000005332) #11	ENSOSIG00000005322 #10	ENSOSIG00000005321
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00390000004582	ENSGT01050000244965.a.b	ENSGT00940000167655	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Pomacentridae	ANCESTRAL SPECIES	131				ENSGT00940000167655	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00940000154411	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00730000112471	ENSGT00390000008403 #20	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Pomacentridae_A	ANCESTRAL SPECIES	135							ENSGT00940000154411	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10	ENSGT00940000167655
Amphiprion	ANCESTRAL SPECIES	255								ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954.lb #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21
Clown anemonefish	MODERN SPECIES	3573											ENSAOCG00000018323 #30	ENSAOCG00000018337 #29	ENSAOCG00000018356 #28	ppp2r5d (ENSAOCG00000018429) #27	mea1 (ENSAOCG00000018446) #26	LRRC73 (ENSAOCG00000018478) #22	DLK2 (ENSAOCG00000018512) #24	ENSAOCG00000018541 #23
Orange clownfish	MODERN SPECIES	12	vsx1 (ENSAPEG00000016477)	ENSAPEG00000016517	acss1 (ENSAPEG00000016540)	ENSAPEG00000016601	apmap (ENSAPEG00000016615) #33	ENSAPEG00000016731	SYNDIG1 (ENSAPEG00000016767) #31	ENSAPEG00000016787 #30	ENSAPEG00000016804	ENSAPEG00000016822 #30	ENSAPEG00000016851 #29	ENSAPEG00000016872 #28	ppp2r5d (ENSAPEG00000016905) #27	ENSAPEG00000016985	mea1 (ENSAPEG00000016996) #26	LRRC73 (ENSAPEG00000017025) #22	ENSAPEG00000017052	DLK2 (ENSAPEG00000017072) #24	ENSAPEG00000017111 #23	dnph1 (ENSAPEG00000017152) #25	yipf3 (ENSAPEG00000017176) #21	serpine3 (ENSAPEG00000017283)
Spiny chromis	MODERN SPECIES	2590												ENSAPOG00000003780 #28	ENSAPOG00000003792	ppp2r5d (ENSAPOG00000003841) #27	mea1 (ENSAPOG00000003878) #26	LRRC73 (ENSAPOG00000003906) #22
Bicolor damselfish	MODERN SPECIES	1520				entpd6 (ENSSPAG00000009160)	vsx1 (ENSSPAG00000009106)	acss1 (ENSSPAG00000009069)	ENSSPAG00000008958	ENSSPAG00000008891	SYNDIG1 (ENSSPAG00000008877) #31	ENSSPAG00000008852 #30	ENSSPAG00000008837	ENSSPAG00000008816 #30	ENSSPAG00000008785 #29	ENSSPAG00000008750 #28	ppp2r5d (ENSSPAG00000008716) #27	LRRC73 (ENSSPAG00000008700) #22	ENSSPAG00000008678	ENSSPAG00000008660 #23
Cichlidae	ANCESTRAL SPECIES	38	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Pseudocrenilabrinae	ANCESTRAL SPECIES	32	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000181480	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000181480	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Lyretail cichlid	MODERN SPECIES	462	gins1 (ENSNBRG00000009908)	ENSNBRG00000009874	AIFM2 (ENSNBRG00000009855)	entpd6 (ENSNBRG00000009827)	vsx1 (ENSNBRG00000009816)	ENSNBRG00000009811	ENSNBRG00000009802	apmap (ENSNBRG00000009783) #33	SYNDIG1 (ENSNBRG00000009766) #31	ENSNBRG00000009758 #30	ENSNBRG00000009651 #30	ENSNBRG00000009626	ENSNBRG00000009553 #28	ppp2r5d (ENSNBRG00000009510) #27	mea1 (ENSNBRG00000009492) #26	LRRC73 (ENSNBRG00000009473) #22	ENSNBRG00000009456 #24	ENSNBRG00000009416 #23	ENSNBRG00000009389	yipf3 (ENSNBRG00000009353) #21	ncoa4 (ENSNBRG00000009323) #20	ENSNBRG00000009304	ENSNBRG00000009287	prkn (ENSNBRG00000009234) #16	ENSNBRG00000009196 #15	UBR2 (ENSNBRG00000009106) #14	prph2b (ENSNBRG00000009087) #13	KCNG3 (ENSNBRG00000009076) ##8	tspan14 (ENSNBRG00000009050)	EML4 (ENSNBRG00000008919) #11	ENSNBRG00000008878 #10
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20
Burton s mouthbrooder	MODERN SPECIES	1230																LRRC73 (ENSHBUG00000009616) #22	ENSHBUG00000009580 #24	ENSHBUG00000009566 #23	dnph1 (ENSHBUG00000009546) #25	yipf3 (ENSHBUG00000009530) #21	ncoa4 (ENSHBUG00000009500) #20
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00390000004582	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00940000170622	ENSGT00940000172797	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b.k #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00390000005029	ENSGT00940000159518.a	ENSGT00940000164095.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT00940000153566.b
P. nyererei	MODERN SPECIES	492															mea1 (ENSPNYG00000001966) #26	LRRC73 (ENSPNYG00000002011) #22	ENSPNYG00000002039 #24	ENSPNYG00000002070 #23	dnph1 (ENSPNYG00000002105) #25	yipf3 (ENSPNYG00000002133) #21	ncoa4 (ENSPNYG00000002178) #20	ENSPNYG00000002257	fbxw4 (ENSPNYG00000002264)	fgf8a (ENSPNYG00000002299)	ENSPNYG00000002573	nt5c2a (ENSPNYG00000002605)	borcs7 (ENSPNYG00000002686)	cyp17a1 (ENSPNYG00000002693)	RNF166 (ENSPNYG00000002749)	ctu2 (ENSPNYG00000002790)	cdk1 (ENSPNYG00000002812)
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00390000004582	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00940000170622	ENSGT00940000172797	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b.k #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00490000044642.a.a.a.a.a.a.d.a.b.b.d.b.d.b	ENSGT00390000005029	ENSGT00940000159518.a	ENSGT00940000164095.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b	ENSGT00390000008797.g	ENSGT00940000153335.a.b
Eastern happy	MODERN SPECIES	4	AIFM2 (ENSACLG00000003628)	entpd6 (ENSACLG00000003640)	vsx1 (ENSACLG00000003666)	ENSACLG00000003679	acss1 (ENSACLG00000003692)	apmap (ENSACLG00000004058) #33	CST7 (ENSACLG00000004075) #32	SYNDIG1 (ENSACLG00000004089) #31	ENSACLG00000004108 #30	ENSACLG00000004118 #30	ENSACLG00000004135	ENSACLG00000004157 #28	ENSACLG00000004195	ppp2r5d (ENSACLG00000004203) #27	mea1 (ENSACLG00000004254) #26	LRRC73 (ENSACLG00000004272) #22	ENSACLG00000004297 #24	ENSACLG00000004316	ENSACLG00000004450 #23	dnph1 (ENSACLG00000004498) #25	yipf3 (ENSACLG00000004518) #21	ncoa4 (ENSACLG00000004547) #20	ENSACLG00000004598	ENSACLG00000004624	fbxw4 (ENSACLG00000004635)	fgf8a (ENSACLG00000004676)	ENSACLG00000004709	slc2a15a (ENSACLG00000004729)	nt5c2a (ENSACLG00000004818)	borcs7 (ENSACLG00000004855)	cyp17a1 (ENSACLG00000004868)
Zebra mbuna	MODERN SPECIES	1095	ENSMZEG00005002746	ACYP2 (ENSMZEG00005002734)	ENSMZEG00005002725	SPTBN1 (ENSMZEG00005002647)	ENSMZEG00005002638	ENSMZEG00005002604	ENSMZEG00005002581	apmap (ENSMZEG00005002551) #33	ENSMZEG00005002540 #32	SYNDIG1 (ENSMZEG00005002508) #31	CUL7 (ENSMZEG00005002437) #30	ENSMZEG00005002401 #29	ENSMZEG00005002385	ppp2r5d (ENSMZEG00005002344) #27	mea1 (ENSMZEG00005002338) #26	LRRC73 (ENSMZEG00005002318) #22	ENSMZEG00005002281 #24	ENSMZEG00005002273 #23	dnph1 (ENSMZEG00005002254) #25	yipf3 (ENSMZEG00005002205) #21	ncoa4 (ENSMZEG00005002183) #20	ENSMZEG00005002175
Nile tilapia	MODERN SPECIES	4	gins1 (ENSONIG00000007057)	AIFM2 (ENSONIG00000007065)	entpd6 (ENSONIG00000028512)	vsx1 (ENSONIG00000007081)	ENSONIG00000007088	acss1 (ENSONIG00000007083)	ENSONIG00000030606	apmap (ENSONIG00000007089) #33	CST7 (ENSONIG00000007095) #32	SYNDIG1 (ENSONIG00000007096) #31	CUL7 (ENSONIG00000007097) #30	ENSONIG00000025397 #29	ENSONIG00000039687 #28	ppp2r5d (ENSONIG00000007102) #27	mea1 (ENSONIG00000039258) #26	LRRC73 (ENSONIG00000007112) #22	ENSONIG00000007116 #24	ENSONIG00000007118 #23	ENSONIG00000038571	yipf3 (ENSONIG00000007123) #21	ncoa4 (ENSONIG00000007129) #20	ENSONIG00000038915	ENSONIG00000007133 #17	prkn (ENSONIG00000007137) #16	UBR2 (ENSONIG00000007141) #14	ENSONIG00000039968	prph2b (ENSONIG00000032901) #13	KCNG3 (ENSONIG00000038229) ##8	ENSONIG00000040039	tspan14 (ENSONIG00000006961)	ENSONIG00000006963 #11
Midas cichlid	MODERN SPECIES	9	rps27a (ENSACIG00000003269)	AIFM2 (ENSACIG00000003288)	entpd6 (ENSACIG00000003387)	vsx1 (ENSACIG00000003497)	ENSACIG00000003515	acss1 (ENSACIG00000003543)	apmap (ENSACIG00000003569) #33	CST7 (ENSACIG00000003585) #32	SYNDIG1 (ENSACIG00000003603) #31	ENSACIG00000003621 #30	ENSACIG00000003653 #30	ENSACIG00000003738 #28	ENSACIG00000003759	ppp2r5d (ENSACIG00000003769) #27	mea1 (ENSACIG00000003821) #26	LRRC73 (ENSACIG00000003832) #22	ENSACIG00000003848 #24	ENSACIG00000003876 #23	dnph1 (ENSACIG00000003905) #25	yipf3 (ENSACIG00000003945) #21	ncoa4 (ENSACIG00000003970) #20	QKI (ENSACIG00000004082) #17
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Percomorphaceae_D	ANCESTRAL SPECIES	26	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT01100000263507.E.a.a.a.a	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Carangaria	ANCESTRAL SPECIES	33	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00940000154411	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Pleuronectoidei	ANCESTRAL SPECIES	73	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00390000011034 #16	ENSGT00940000159658.a.a ##8	ENSGT00390000003039 #10	ENSGT00940000158434 #11	ENSGT00940000159235
Turbot	MODERN SPECIES	6	ENSSMAG00000023273	ENSSMAG00000007740	ENSSMAG00000007690	gins1 (ENSSMAG00000007654)	abhd12 (ENSSMAG00000007585)	ENSSMAG00000007617	ENTPD6 (ENSSMAG00000007560)	vsx1 (ENSSMAG00000007488)	ACSS1 (ENSSMAG00000007425)	APMAP (ENSSMAG00000007388) #33	CST7 (ENSSMAG00000007379) #32	ENSSMAG00000007361 #31	ENSSMAG00000037461 #28	ENSSMAG00000007248 #27	mea1 (ENSSMAG00000007230) #26	ENSSMAG00000007204 #22	ENSSMAG00000007190 #24	ENSSMAG00000007149 #23	ENSSMAG00000007129 #25	yipf3 (ENSSMAG00000007107) #21	ncoa4 (ENSSMAG00000007072) #20	ENSSMAG00000007047 #13	ENSSMAG00000006806 #14	ENSSMAG00000006759	ENSSMAG00000006576 #11	ENSSMAG00000033407 #10
Tongue sole	MODERN SPECIES	3	ENSCSEG00000004265	HECTD2 (ENSCSEG00000004270)	ppp1r3ca (ENSCSEG00000004280)	ENSCSEG00000004282	cyp26c1 (ENSCSEG00000004291)	ENSCSEG00000004329	slc22a15 (ENSCSEG00000004341)	ENSCSEG00000004348	apmap (ENSCSEG00000004354) #33	ENSCSEG00000004377 #32	ENSCSEG00000004386 #30	ENSCSEG00000004417	ENSCSEG00000004425 #28	ppp2r5d (ENSCSEG00000004428) #27	mea1 (ENSCSEG00000004434) #26	LRRC73 (ENSCSEG00000004438) #22	DLK2 (ENSCSEG00000004449) #24	ENSCSEG00000004465 #23	dnph1 (ENSCSEG00000004477) #25	ENSCSEG00000004479	selenou1a (ENSCSEG00000004484)	sfxn3 (ENSCSEG00000004493)	pdzd7a (ENSCSEG00000004504)	lzts2a (ENSCSEG00000004518)	SEMA4G (ENSCSEG00000004522)	tp53bp2a (ENSCSEG00000004564)	XPO5 (ENSCSEG00000004593)	ENSCSEG00000004603	EFEMP1 (ENSCSEG00000004612)	MARK1 (ENSCSEG00000004622)	lgi1a (ENSCSEG00000004645)
Carangaria_A	ANCESTRAL SPECIES	76	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT01100000263507.E.a.a.a.a	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Barramundi perch	MODERN SPECIES	646														ENSLCAG00010006350 #27	mea1 (ENSLCAG00010006346) #26	LRRC73 (ENSLCAG00010006343) #22	DLK2 (ENSLCAG00010006331) #24	ENSLCAG00010006320 #23	dnph1 (ENSLCAG00010006316) #25	yipf3 (ENSLCAG00010006306) #21	ncoa4 (ENSLCAG00010006292) #20	ENSLCAG00010006277	KCNG3 (ENSLCAG00010006272) ##8
Seriola	ANCESTRAL SPECIES	98	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00940000154411	ENSGT00940000157467.v	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21
Greater amberjack	MODERN SPECIES	55	ENSSDUG00000003935	pygb (ENSSDUG00000003969)	ENSSDUG00000004053	entpd6 (ENSSDUG00000004060)	vsx1 (ENSSDUG00000004078)	ENSSDUG00000004089	acss1 (ENSSDUG00000004130)	apmap (ENSSDUG00000004176) #33	CST7 (ENSSDUG00000004191) #32	SYNDIG1 (ENSSDUG00000004206) #31	CUL7 (ENSSDUG00000004222) #30	ENSSDUG00000004331 #29	ENSSDUG00000004358 #28	ppp2r5d (ENSSDUG00000004373) #27	mea1 (ENSSDUG00000004418) #26	LRRC73 (ENSSDUG00000004427) #22	ENSSDUG00000004452 #24	ENSSDUG00000004501 #23	dnph1 (ENSSDUG00000004542) #25	yipf3 (ENSSDUG00000004560) #21	ARFGEF3 (ENSSDUG00000004588)	HTR7 (ENSSDUG00000004660)	ENSSDUG00000004734	ENSSDUG00000005097	ANKRD1 (ENSSDUG00000005146)	ENSSDUG00000005170	pcgf5a (ENSSDUG00000005188)	ENSSDUG00000005211	HECTD2 (ENSSDUG00000005226)	ppp1r3ca (ENSSDUG00000005259)	ENSSDUG00000005267
Yellowtail amberjack	MODERN SPECIES	3254	ENSSLDG00000017435	entpd6 (ENSSLDG00000017445)	vsx1 (ENSSLDG00000017478)	acss1 (ENSSLDG00000017494)	ENSSLDG00000017537	ENSSLDG00000017546	ENSSLDG00000017553	apmap (ENSSLDG00000017561) #33	CST7 (ENSSLDG00000017575) #32	SYNDIG1 (ENSSLDG00000017584) #31	CUL7 (ENSSLDG00000017639) #30	ENSSLDG00000017751 #29	ENSSLDG00000017789 #28	ppp2r5d (ENSSLDG00000017882) #27	mea1 (ENSSLDG00000017918) #26	LRRC73 (ENSSLDG00000017925) #22	ENSSLDG00000017940 #24	ENSSLDG00000017955 #23
Anabantaria	ANCESTRAL SPECIES	38	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00940000154411	ENSGT01100000263533.b.a.a.b	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Zig-zag eel	MODERN SPECIES	6	GINS1 (ENSMAMG00000022524)	abhd12 (ENSMAMG00000022521)	ENSMAMG00000027221	ENTPD6 (ENSMAMG00000022517)	vsx1 (ENSMAMG00000022512)	ACSS1 (ENSMAMG00000022509)	ENSMAMG00000022502	APMAP (ENSMAMG00000022493) #33	CST7 (ENSMAMG00000022492) #32	SYNDIG1 (ENSMAMG00000022489) #31	ENSMAMG00000022485 #29	ENSMAMG00000022480 #28	ppp2r5d (ENSMAMG00000022474) #27	mea1 (ENSMAMG00000022473) #26	ENSMAMG00000022469 #24	ENSMAMG00000022467 #22	ENSMAMG00000022464 #23	ENSMAMG00000022460 #25	yipf3 (ENSMAMG00000022454) #21	ncoa4 (ENSMAMG00000022452) #20	ENSMAMG00000026062	ENSMAMG00000027318 #17	prkn (ENSMAMG00000022445) #16	ENSMAMG00000028121 #15	ENSMAMG00000022444 #14	ENSMAMG00000022441 #13	ENSMAMG00000022439 ##8	ENSMAMG00000026809 #9	ENSMAMG00000022435	ENSMAMG00000022431 #11	ENSMAMG00000025279 #10
Anabantoidei	ANCESTRAL SPECIES	35	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00940000154411	ENSGT01100000263491.a.a.c.b	ENSGT01100000263533.b.a.a.b	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000168290 #29	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Climbing perch	MODERN SPECIES	6	ENSATEG00000006825	ENSATEG00000021917	ENSATEG00000021922	ENSATEG00000021937	gins1 (ENSATEG00000021979)	VSX1 (ENSATEG00000021999)	ENSATEG00000022064	ACSS1 (ENSATEG00000022038)	APMAP (ENSATEG00000022167) #33	CST7 (ENSATEG00000022225) #32	SYNDIG1 (ENSATEG00000022241) #31	ENSATEG00000022253 #30	ENSATEG00000022319 #29	ENSATEG00000022337 #27	mea1 (ENSATEG00000022363) #26	ENSATEG00000022373 #22	ENSATEG00000022394	ENSATEG00000022427 #24	ENSATEG00000022466 #23	ENSATEG00000025538	ENSATEG00000022504 #25	yipf3 (ENSATEG00000022524) #21	ncoa4 (ENSATEG00000022558) #20	ENSATEG00000022584 #17	ENSATEG00000028192	prkn (ENSATEG00000022611) #16	ENSATEG00000022672 #14	ENSATEG00000022722 #13	ENSATEG00000022728 ##8	ENSATEG00000022738	ENSATEG00000022754 #11
Siamese fighting fish	MODERN SPECIES	6	gins1 (ENSBSLG00000016768)	ENSBSLG00000016803	ENSBSLG00000016939	entpd6 (ENSBSLG00000016958)	vsx1 (ENSBSLG00000017100)	ENSBSLG00000017229	acss1 (ENSBSLG00000017444)	ENSBSLG00000018771	apmap (ENSBSLG00000018848) #33	CST7 (ENSBSLG00000018971) #32	SYNDIG1 (ENSBSLG00000019001) #31	CUL7 (ENSBSLG00000019049) #30	ENSBSLG00000019795 #29	ppp2r5d (ENSBSLG00000019953) #27	mea1 (ENSBSLG00000020540) #26	LRRC73 (ENSBSLG00000020944) #22	ENSBSLG00000020988 #24	ENSBSLG00000021094 #23	dnph1 (ENSBSLG00000021180) #25	yipf3 (ENSBSLG00000021247) #21	ncoa4 (ENSBSLG00000021399) #20	prkn (ENSBSLG00000021447) #16	prph2b (ENSBSLG00000021704) #13	tspan14 (ENSBSLG00000021784)	ENSBSLG00000021853 #11	ENSBSLG00000022324 #10	EML4 (ENSBSLG00000022446) #11	tspan14 (ENSBSLG00000022977)	KCNG3 (ENSBSLG00000023011) ##8	prph2b (ENSBSLG00000023017) #13
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00390000011034 #16	ENSGT00940000159658.a.a ##8	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10	ENSGT00530000064150	ENSGT01010000222287.B.a.a.a.a.a.a
Fugu	MODERN SPECIES	16	ninl (ENSTRUG00000006138)	gins1 (ENSTRUG00000006354)	abhd12 (ENSTRUG00000006368)	pygb (ENSTRUG00000006615)	ENSTRUG00000030656	entpd6 (ENSTRUG00000007946)	vsx1 (ENSTRUG00000004377)	acss1 (ENSTRUG00000004153)	apmap (ENSTRUG00000003885) #33	CST7 (ENSTRUG00000027365) #32	SYNDIG1 (ENSTRUG00000003768) #31	CUL7 (ENSTRUG00000001875) #30	ENSTRUG00000031439 #28	ENSTRUG00000020191 #29	mea1 (ENSTRUG00000002736) #26	LRRC73 (ENSTRUG00000003016) #22	ENSTRUG00000003130 #24	ENSTRUG00000003134 #23	dnph1 (ENSTRUG00000003415) #25	yipf3 (ENSTRUG00000003502) #21	ncoa4 (ENSTRUG00000003924) #20	ENSTRUG00000024222	prph2b (ENSTRUG00000004626) #13	UBR2 (ENSTRUG00000004807) #14	prkn (ENSTRUG00000006244) #16	KCNG3 (ENSTRUG00000006356) ##8	tspan14 (ENSTRUG00000006403)	EML4 (ENSTRUG00000006655) #11	ENSTRUG00000022034 #10	ARFGEF3 (ENSTRUG00000007336)	HTR7 (ENSTRUG00000007675)
Tetraodon	MODERN SPECIES	9	gins1 (ENSTNIG00000013364)	abhd12 (ENSTNIG00000013365)	pygb (ENSTNIG00000013366)	ENSTNIG00000013367	entpd6 (ENSTNIG00000013368)	vsx1 (ENSTNIG00000013369)	ENSTNIG00000013370	acss1 (ENSTNIG00000013371)	apmap (ENSTNIG00000013372) #33	CST7 (ENSTNIG00000013373) #32	CUL7 (ENSTNIG00000013374) #30	ENSTNIG00000013375 #28	ENSTNIG00000013376	ppp2r5d (ENSTNIG00000013377) #27	mea1 (ENSTNIG00000013378) #26	LRRC73 (ENSTNIG00000013379) #22	DLK2 (ENSTNIG00000013380) #24	ENSTNIG00000013381 #23	dnph1 (ENSTNIG00000013382) #25	yipf3 (ENSTNIG00000013383) #21	ncoa4 (ENSTNIG00000013384) #20	ENSTNIG00000013385	prph2b (ENSTNIG00000013386) #13	UBR2 (ENSTNIG00000013387) #14	prkn (ENSTNIG00000013388) #16	KCNG3 (ENSTNIG00000013389) ##8	tspan14 (ENSTNIG00000013390)	EML4 (ENSTNIG00000013391) #11	ARFGEF3 (ENSTNIG00000013392)	HTR7 (ENSTNIG00000013393)	ENSTNIG00000013394
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00950000183147.B #31	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Ballan wrasse	MODERN SPECIES	290	FAM98A (ENSLBEG00000025346)	DNAH2 (ENSLBEG00000025185)	ENSLBEG00000025100	rasgrp3 (ENSLBEG00000025000)	LTBP1 (ENSLBEG00000024891)	ttc27 (ENSLBEG00000024787)	ENSLBEG00000024757	BIRC6 (ENSLBEG00000024531)	yipf4 (ENSLBEG00000024453)	exo1 (ENSLBEG00000024405)	ENSLBEG00000024364	ENSLBEG00000024344	CALHM3 (ENSLBEG00000024328)	ncapd3 (ENSLBEG00000024293)	calhm2.1 (ENSLBEG00000024277)	LRRC73 (ENSLBEG00000024245) #22	DLK2 (ENSLBEG00000024196) #24
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00940000170622	ENSGT00950000183147.B #31	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Eupecaria_C	ANCESTRAL SPECIES	49	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00940000160277 #32	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000162367.f	ENSGT00940000154815.b.b #9	ENSGT00940000159658.a.a ##8	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000159235	ENSGT00940000158434 #11
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	58	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #33	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000162367.f	ENSGT00940000155310.a.b #17	ENSGT00390000011034 #16	ENSGT00910000144630.a #15	ENSGT00950000183075.a.a.a.a #14	ENSGT00940000157303.e #13	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
European seabass	MODERN SPECIES	159	ENSDLAG00005030496	ENSDLAG00005027959	ENSDLAG00005027384	vsx1 (ENSDLAG00005018343)	ACSS1 (ENSDLAG00005026852)	ENSDLAG00005003094	ENSDLAG00005003047	entpd6 (ENSDLAG00005027027)	APMAP (ENSDLAG00005017079) #33	ENSDLAG00005032921 #30	ENSDLAG00005029760 #28	ENSDLAG00005002963 #29	ENSDLAG00005032648 #26	ENSDLAG00005034134	ENSDLAG00005029419 #27	ENSDLAG00005020168 #22	ENSDLAG00005032278	ENSDLAG00005030669 #24	ENSDLAG00005031153	ENSDLAG00005026380 #23	ENSDLAG00005032869	ENSDLAG00005029291 #25	yipf3 (ENSDLAG00005029699) #21	ncoa4 (ENSDLAG00005019204) #20	ENSDLAG00005019223	ENSDLAG00005034910 #17	ENSDLAG00005014533	ENSDLAG00005027265	ENSDLAG00005028826	ENSDLAG00005026771 #15	ENSDLAG00005033924 #14
Large yellow croaker	MODERN SPECIES	27														ppp2r5d (ENSLCRG00005014764) #27	mea1 (ENSLCRG00005015156) #26	LRRC73 (ENSLCRG00005015158) #22	ENSLCRG00005015160	ENSLCRG00005015161 #24	ENSLCRG00005015162 #23	yipf3 (ENSLCRG00005015165) #21	ncoa4 (ENSLCRG00005015185) #20	ENSLCRG00005015187	ENSLCRG00005015188	QKI (ENSLCRG00005015189) #17	prkn (ENSLCRG00005015190) #16	UBR2 (ENSLCRG00005015223) #14	prph2b (ENSLCRG00005017510) #13	KCNG3 (ENSLCRG00005017511) ##8	tspan14 (ENSLCRG00005017512)	EML4 (ENSLCRG00005017526) #11	apmap (ENSLCRG00005018792) #33
Perciformes	ANCESTRAL SPECIES	49									ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00940000170622	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00730000112471	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000155310.a.b #17	ENSGT00940000159658.a.a ##8	ENSGT00940000154815.b.b #9	ENSGT00940000159235	ENSGT00940000158434 #11
Perciformes_a	ANCESTRAL SPECIES	129													ENSGT00940000168290 #29	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	357									ENSSLUG00000005267	ENSSLUG00000005280	ENSSLUG00000005287	ENSSLUG00000005307	ENSSLUG00000005326	PPP2R5D (ENSSLUG00000005383) #27	mea1 (ENSSLUG00000005492) #26	LRRC73 (ENSSLUG00000005514) #22	DLK2 (ENSSLUG00000005555) #24
Pike perch	MODERN SPECIES	634																LRRC73 (ENSSLUG00000003907) #22	ENSSLUG00000003901	DLK2 (ENSSLUG00000003877) #24	ENSSLUG00000003870
Cottioidei	ANCESTRAL SPECIES	59	ENSGT00940000176919	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00940000153954 #30	ENSGT00940000172797	ENSGT00940000168290 #29	ENSGT00940000170622	ENSGT00390000000614 #28	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000016927 #26	ENSGT00390000003256 #22	ENSGT00940000160761 #24	ENSGT00940000164045 #23	ENSGT00390000001216 #25	ENSGT00940000153766.A #21	ENSGT00390000008403 #20	ENSGT00940000162367.f	ENSGT00940000157303.e #13	ENSGT00950000183075.a.a.a.a #14	ENSGT00910000144630.a #15	ENSGT00390000011034 #16	ENSGT00940000159235	ENSGT00940000158434 #11	ENSGT00390000003039 #10
Stickleback	MODERN SPECIES	6	ENSGACG00000012136	vsx1 (ENSGACG00000012138)	entpd6 (ENSGACG00000012144)	ENSGACG00000012158	abhd12 (ENSGACG00000012160)	gins1 (ENSGACG00000012166)	ninl (ENSGACG00000012168)	ENSGACG00000012187 #30	ENSGACG00000012200 #30	ENSGACG00000012205	ENSGACG00000012206 #29	ENSGACG00000012211	ENSGACG00000012217 #28	ppp2r5d (ENSGACG00000012222) #27	mea1 (ENSGACG00000012242) #26	LRRC73 (ENSGACG00000012246) #22	DLK2 (ENSGACG00000012250) #24	ENSGACG00000012257 #23	DNPH1 (ENSGACG00000012262) #25	yipf3 (ENSGACG00000012266) #21	ncoa4 (ENSGACG00000012317) #20	ENSGACG00000012324	prph2b (ENSGACG00000012325) #13	UBR2 (ENSGACG00000012336) #14	prkn (ENSGACG00000012371) #16	tspan14 (ENSGACG00000012392)	EML4 (ENSGACG00000012405) #11	ENSGACG00000012414 #10
Lumpfish	MODERN SPECIES	6	CST7 (ENSCLMG00005002279) #32	apmap (ENSCLMG00005002277) #33	ENSCLMG00005002274	ENSCLMG00005002273	ACSS1 (ENSCLMG00005002247)	ENSCLMG00005002223	vsx1 (ENSCLMG00005002206)	ENSCLMG00005002203	entpd6 (ENSCLMG00005002190)	ENSCLMG00005002189	abhd12 (ENSCLMG00005002188)	gins1 (ENSCLMG00005002187)	ENSCLMG00005002006 #29	PPP2R5D (ENSCLMG00005001730) #27	mea1 (ENSCLMG00005001543) #26	LRRC73 (ENSCLMG00005001519) #22	DLK2 (ENSCLMG00005001504) #24	ENSCLMG00005001490 #23	dnph1 (ENSCLMG00005001477) #25	yipf3 (ENSCLMG00005001411) #21	ncoa4 (ENSCLMG00005001362) #20	ENSCLMG00005015603	PRPH2 (ENSCLMG00005015602) #13	UBR2 (ENSCLMG00005014234) #14	ENSCLMG00005014205 #15	ENSCLMG00005014204 #16	prkn (ENSCLMG00005014203) #16	ENSCLMG00005014202	tspan14 (ENSCLMG00005014200)	ENSCLMG00005014199 #11	ENSCLMG00005014198 #11
Pinecone sodierfish	MODERN SPECIES	6	ENSMMDG00005018575	ENSMMDG00005018577	ENSMMDG00005018580	entpd6 (ENSMMDG00005018585)	vsx1 (ENSMMDG00005018600)	ENSMMDG00005018606	acss1 (ENSMMDG00005018619)	ENSMMDG00005018653	apmap (ENSMMDG00005018655) #33	CST7 (ENSMMDG00005018660) #32	SYNDIG1 (ENSMMDG00005018663) #31	CUL7 (ENSMMDG00005018677) #30	ENSMMDG00005018716 #28	ppp2r5d (ENSMMDG00005018729) #27	ENSMMDG00005018825	LRRC73 (ENSMMDG00005005537) #22	DLK2 (ENSMMDG00005005539) #24	ENSMMDG00005005545	ENSMMDG00005005548 #23	dnph1 (ENSMMDG00005005552) #25	yipf3 (ENSMMDG00005005553) #21	ncoa4 (ENSMMDG00005005929) #20	ENSMMDG00005005935	QKI (ENSMMDG00005005941) #17	ENSMMDG00005005947 ##17	prkn (ENSMMDG00005005950) #16	ENSMMDG00005005952	ENSMMDG00005005955 #15	ENSMMDG00005005958	UBR2 (ENSMMDG00005006039) #14	prph2b (ENSMMDG00005008020) #13
Cod	MODERN SPECIES	6	ENSGMOG00000000145	tm9sf2 (ENSGMOG00000014604)	ENSGMOG00000012517	ENSGMOG00000012518	ENSGMOG00000008461	ENSGMOG00000002285	ENSGMOG00000029540	ENSGMOG00000026771	prkn (ENSGMOG00000003551) #16	ENSGMOG00000028673	ENSGMOG00000022579	ENSGMOG00000035953	ENSGMOG00000025515 #17	ncoa4 (ENSGMOG00000034572) #20	yipf3 (ENSGMOG00000004630) #21	ENSGMOG00000018195 #22	ENSGMOG00000027899	ENSGMOG00000035678	mea1 (ENSGMOG00000018532) #26	ppp2r5d (ENSGMOG00000018505) #27	ENSGMOG00000023065 #28	ENSGMOG00000033739 #29	ENSGMOG00000018369 #30	ENSGMOG00000008795 #31	ENSGMOG00000000635 #33	ENSGMOG00000024652	ENSGMOG00000036705	ENSGMOG00000018575	ENSGMOG00000024561	ENSGMOG00000005151	ENSGMOG00000014811
Osteoglossiformes	ANCESTRAL SPECIES	46	ENSGT00940000155061.a.b.l	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B	ENSGT00940000153766.A #21	ENSGT00390000003256 #22	ENSGT00940000164045 #23	ENSGT00940000160761 #24	ENSGT00390000001216 #25	ENSGT00390000016927 #26	ENSGT01030000234620.a.a.a.b #27	ENSGT00390000000614 #28	ENSGT00940000168290 #29	ENSGT00940000153954 #30	ENSGT00950000183147.B #31	ENSGT00940000160277 #32	ENSGT00440000039984.a #33	ENSGT01100000263520.a.a.a.a.b.b.b.b	ENSGT00940000157865	ENSGT00440000037341.a	ENSGT00940000158843
Asian bonytongue	MODERN SPECIES	23	PSD (ENSSFOG00015020339)	ENSSFOG00015020243	AIFM2 (ENSSFOG00015020205)	ninl (ENSSFOG00015020152)	gins1 (ENSSFOG00015025088)	abhd12 (ENSSFOG00015027870)	pygb (ENSSFOG00015020040)	ENSSFOG00015019993	entpd6 (ENSSFOG00015019960)	vsx1 (ENSSFOG00015019941)	acss1 (ENSSFOG00015019908)	degs1 (ENSSFOG00015026332)	fbxo28 (ENSSFOG00015032127)	polr1c (ENSSFOG00015019860)	yipf3 (ENSSFOG00015019808) #21	LRRC73 (ENSSFOG00015019790) #22	ENSSFOG00015019742 #23	DLK2 (ENSSFOG00015033158) #24	dnph1 (ENSSFOG00015019717) #25	mea1 (ENSSFOG00015027564) #26	ppp2r5d (ENSSFOG00015019640) #27	ENSSFOG00015019616 #28	ENSSFOG00015019586 #29	CUL7 (ENSSFOG00015019507) #30	ENSSFOG00015024873	SYNDIG1 (ENSSFOG00015031745) #31	ENSSFOG00015019486 #32	apmap (ENSSFOG00015019473) #33	ENSSFOG00015019461	ENSSFOG00015019432	FAM98A (ENSSFOG00015019413)
P. kingsleyae	MODERN SPECIES	188		ninl (ENSPKIG00000010435)	gins1 (ENSPKIG00000010392)	abhd12 (ENSPKIG00000010364)	pygb (ENSPKIG00000010308)	ENSPKIG00000010258	entpd6 (ENSPKIG00000010184)	vsx1 (ENSPKIG00000010156)	ENSPKIG00000010145	acss1 (ENSPKIG00000010107)	nvl (ENSPKIG00000009967)	degs1 (ENSPKIG00000009914)	fbxo28 (ENSPKIG00000009895)	polr1c (ENSPKIG00000009858)	yipf3 (ENSPKIG00000009819) #21	LRRC73 (ENSPKIG00000009786) #22	ENSPKIG00000009733 #23	DLK2 (ENSPKIG00000009706) #24	dnph1 (ENSPKIG00000009695) #25	mea1 (ENSPKIG00000009678) #26	ppp2r5d (ENSPKIG00000009600) #27	ENSPKIG00000009562 #28	ENSPKIG00000009537 #29	CUL7 (ENSPKIG00000009345) #30	SYNDIG1 (ENSPKIG00000009263) #31	ENSPKIG00000009194 #32	apmap (ENSPKIG00000009133) #33	ENSPKIG00000009111	ENSPKIG00000009072	FAM98A (ENSPKIG00000009038)	rasgrp3 (ENSPKIG00000008983)
Spotted gar	MODERN SPECIES	654	ENSLOCG00000016636	ENSLOCG00000016638	exo1 (ENSLOCG00000016639)	yipf4 (ENSLOCG00000016640)	BIRC6 (ENSLOCG00000016644)	ttc27 (ENSLOCG00000016680)	LTBP1 (ENSLOCG00000016686)	rasgrp3 (ENSLOCG00000016689)	FAM98A (ENSLOCG00000016699)	ENSLOCG00000016701	nvl (ENSLOCG00000016706)	degs1 (ENSLOCG00000016708)	fbxo28 (ENSLOCG00000016709)	polr1c (ENSLOCG00000016710)	yipf3 (ENSLOCG00000016712) #21	LRRC73 (ENSLOCG00000016718) #22	ENSLOCG00000016719 #23	DLK2 (ENSLOCG00000016721) #24	ENSLOCG00000016723	ENSLOCG00000016729	ENSLOCG00000016733 #28	ppp2r5d (ENSLOCG00000016734) #27	mea1 (ENSLOCG00000016738) #26	dnph1 (ENSLOCG00000016740) #25	CUL7 (ENSLOCG00000016743) #30	ninl (ENSLOCG00000016750)	gins1 (ENSLOCG00000016757)	abhd12 (ENSLOCG00000016763)	pygb (ENSLOCG00000016769)	ENSLOCG00000016781	entpd6 (ENSLOCG00000016784)
Reedfish	MODERN SPECIES	6	exo1 (ENSECRG00000017500)	yipf4 (ENSECRG00000017405)	COX6A1 (ENSECRG00000017354)	ENSECRG00000017334	BIRC6 (ENSECRG00000016833)	ENSECRG00000016583	LTBP1 (ENSECRG00000016077)	rasgrp3 (ENSECRG00000015885)	FAM98A (ENSECRG00000015851)	ENSECRG00000015791	nvl (ENSECRG00000015733)	degs1 (ENSECRG00000015517)	fbxo28 (ENSECRG00000015463)	polr1c (ENSECRG00000015427)	yipf3 (ENSECRG00000015119) #21	LRRC73 (ENSECRG00000015041) #22	ENSECRG00000014952 #23	DLK2 (ENSECRG00000014915) #24	ENSECRG00000014840	ENSECRG00000014708 #28	ppp2r5d (ENSECRG00000014657) #27	mea1 (ENSECRG00000020885) #26	dnph1 (ENSECRG00000020864) #25	CUL7 (ENSECRG00000020812) #30	srfb (ENSECRG00000020770)	ptk7a (ENSECRG00000020679)	soul4 (ENSECRG00000020641)	ENSECRG00000020591	mrpl2 (ENSECRG00000020564)	ENSECRG00000020556	ENSECRG00000020479