Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00940000154170.A	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT00950000183076.b #18	ENSGT01050000244840.A.b.b #17	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00390000001362	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37	ENSGT00510000046704.b.a
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00940000154170.A	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT00950000183076.b #18	ENSGT01050000244840.A.b.b #17	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00390000001362	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37	ENSGT00510000046704.b.a
Bovinae	ANCESTRAL SPECIES	33	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00940000154170.A	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT00910000147370 #16	ENSGT00950000183076.b #18	ENSGT01050000244840.A.b.b #17	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00390000001362	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.j ##30	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37
Bos	ANCESTRAL SPECIES	31	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT00910000147370 #16	ENSGT00950000183076.b #18	ENSGT01050000244840.A.b.b #17	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00390000001362	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.i.a.a.b #30	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT00910000147370 #16	ENSGT01050000244840.A.b.b #17	ENSGT00950000183076.b #18	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00730000111121 #24	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.i.a.a.b #30	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37	ENSGT00510000046704.b.a	ENSGT00940000156354
Domestic yak	MODERN SPECIES	2	DRD1 (ENSBGRG00000011292) #7	GCNT4 (ENSBGRG00000011247) #8	ENSBGRG00000011228 #9	ANKRD31 (ENSBGRG00000010828) #10	HMGCR (ENSBGRG00000010597) #11	CERT1 (ENSBGRG00000009779) #12	POLK (ENSBGRG00000009306) #13	POC5 (ENSBGRG00000008737) #14	SV2C (ENSBGRG00000008621) #15	ENSBGRG00000008593 #16	F2RL2 (ENSBGRG00000008567) #17	IQGAP2 (ENSBGRG00000007931) #18	F2R (ENSBGRG00000007892) #19	F2RL1 (ENSBGRG00000007822) #20	ENSBGRG00000007803 #21	S100Z (ENSBGRG00000007761) #22	ENSBGRG00000007739 #23	AGGF1 (ENSBGRG00000007412) #24	ZBED3 (ENSBGRG00000007380) #25	PDE8B (ENSBGRG00000006555) #26	WDR41 (ENSBGRG00000006363) #27	OTP (ENSBGRG00000006298) #28	TBCA (ENSBGRG00000006236) #29	ENSBGRG00000006222 #30	AP3B1 (ENSBGRG00000006021) #31	SCAMP1 (ENSBGRG00000005900) #32	LHFPL2 (ENSBGRG00000005875) #33	ENSBGRG00000005848 #34	ARSB (ENSBGRG00000005773) #35	DMGDH (ENSBGRG00000005663) #36	ENSBGRG00000005598 #37
Wild yak	MODERN SPECIES	297				GCNT4 (ENSBMUG00000012260) #8	ANKRD31 (ENSBMUG00000012237) #10	HMGCR (ENSBMUG00000012171) #11	CERT1 (ENSBMUG00000011873) #12	POLK (ENSBMUG00000011634) #13	POC5 (ENSBMUG00000011568) #14	SV2C (ENSBMUG00000011496) #15	ENSBMUG00000011462 #16	F2RL2 (ENSBMUG00000011445) #17	IQGAP2 (ENSBMUG00000011350) #18	F2R (ENSBMUG00000011164) #19	F2RL1 (ENSBMUG00000011152) #20	S100Z (ENSBMUG00000011148) #22	AGGF1 (ENSBMUG00000011125) #24	PDE8B (ENSBMUG00000011054) #26	WDR41 (ENSBMUG00000010747) #27	OTP (ENSBMUG00000010682) #28	TBCA (ENSBMUG00000010673) #29	ENSBMUG00000010660 ##30	ENSBMUG00000010637
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT00910000147370 #16	ENSGT00950000183076.b #18	ENSGT01050000244840.A.b.b #17	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00390000001362	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.i.a.a.b #30	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37
Hybrid Bos Indicus	MODERN SPECIES	1					GCNT4 (ENSBIXG00005011458) #8	ANKRD31 (ENSBIXG00005011423) #10	HMGCR (ENSBIXG00005011318) #11	CERT1 (ENSBIXG00005011247) #12	POLK (ENSBIXG00005011147) #13	POC5 (ENSBIXG00005010780) #14	SV2C (ENSBIXG00005010694) #15	ENSBIXG00005007521 #16	IQGAP2 (ENSBIXG00005010623) #18	F2RL2 (ENSBIXG00005010387) #17	F2R (ENSBIXG00005000862) #19	S100Z (ENSBIXG00005010347) #22	CRHBP (ENSBIXG00005000840)	AGGF1 (ENSBIXG00005010286) #24	ENSBIXG00005010267 #23	PDE8B (ENSBIXG00005010189) #26	ENSBIXG00005000677 ##21	WDR41 (ENSBIXG00005009893) #27	OTP (ENSBIXG00005009799) #28	TBCA (ENSBIXG00005000599) #29	ENSBIXG00005009736 #30	AP3B1 (ENSBIXG00005009658) #31	ENSBIXG00005009460	SCAMP1 (ENSBIXG00005009438) #32	ARSB (ENSBIXG00005009357) #35	ENSBIXG00005009344 #34	DMGDH (ENSBIXG00005009320) #36
Cow	MODERN SPECIES	1	HRH2 (ENSBTAG00000044071)	SFXN1 (ENSBTAG00000014536)	DRD1 (ENSBTAG00000047719) #7	GCNT4 (ENSBTAG00000050091) #8	ANKRD31 (ENSBTAG00000024878) #10	HMGCR (ENSBTAG00000007840) #11	CERT1 (ENSBTAG00000000081) #12	POLK (ENSBTAG00000004028) #13	POC5 (ENSBTAG00000007114) #14	SV2C (ENSBTAG00000017507) #15	ENSBTAG00000052974 #16	IQGAP2 (ENSBTAG00000000897) #18	F2RL2 (ENSBTAG00000000898) #17	F2R (ENSBTAG00000020199) #19	F2RL1 (ENSBTAG00000034848) #20	S100Z (ENSBTAG00000020201) #22	CRHBP (ENSBTAG00000020202)	AGGF1 (ENSBTAG00000034823) #24	ZBED3 (ENSBTAG00000052845) #25	PDE8B (ENSBTAG00000020205) #26	WDR41 (ENSBTAG00000020212) #27	OTP (ENSBTAG00000009249) #28	TBCA (ENSBTAG00000003263) #29	ENSBTAG00000052130 #30	AP3B1 (ENSBTAG00000005016) #31	SCAMP1 (ENSBTAG00000007371) #32	LHFPL2 (ENSBTAG00000007374) #33	ARSB (ENSBTAG00000008341) #35	DMGDH (ENSBTAG00000002110) #36	BHMT2 (ENSBTAG00000038234) #37	BHMT (ENSBTAG00000002255) ##37
American bison	MODERN SPECIES	3169	ENSBBBG00000005945	ENSBBBG00000022510	GCNT4 (ENSBBBG00000005939) #8	ANKRD31 (ENSBBBG00000022499) #10	HMGCR (ENSBBBG00000005907) #11	CERT1 (ENSBBBG00000022291) #12	POLK (ENSBBBG00000021965) #13	ANKDD1B (ENSBBBG00000008030)	POC5 (ENSBBBG00000021773) #14	SV2C (ENSBBBG00000006918) #15	ENSBBBG00000021689 #16	IQGAP2 (ENSBBBG00000021677) #18	F2RL2 (ENSBBBG00000021481) #17	F2R (ENSBBBG00000021478) #19	F2RL1 (ENSBBBG00000021471) #20	S100Z (ENSBBBG00000021469) #22	CRHBP (ENSBBBG00000021464)	AGGF1 (ENSBBBG00000021443) #24	PDE8B (ENSBBBG00000021396) #26	WDR41 (ENSBBBG00000021018) #27	TBCA (ENSBBBG00000005639) #29	ENSBBBG00000005636 ##30	AP3B1 (ENSBBBG00000005629) #31	SCAMP1 (ENSBBBG00000020857) #32	LHFPL2 (ENSBBBG00000020821) #33	ARSB (ENSBBBG00000020814) #35
Caprinae	ANCESTRAL SPECIES	30	ENSGT00950000182938.a	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857 #7	ENSGT00940000159721 #8	ENSGT00940000162618 #10	ENSGT00940000155305 #11	ENSGT00940000155123.b #12	ENSGT00940000156667 #13	ENSGT00390000004454 #14	ENSGT00950000182940.b.b #15	ENSGT01050000244840.A.b.b #17	ENSGT00950000183076.b #18	ENSGT01050000244840.A.a.b #19	ENSGT01050000244840.A.a.a #20	ENSGT00940000161125 #22	ENSGT00390000001362	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #31	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #35	ENSGT00940000158176 #36	ENSGT00390000003122.c.b #37	ENSGT00390000003122.c.a ##37	ENSGT00510000046704.b.a
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	23	CPLX2 (ENSOARG00020020263)	HRH2 (ENSOARG00020020329)	SFXN1 (ENSOARG00020020382)	ENSOARG00020020572 #7	GCNT4 (ENSOARG00020020622) #8	ENSOARG00020020636 #10	HMGCR (ENSOARG00020020760) #11	CERT1 (ENSOARG00020020967) #12	POLK (ENSOARG00020021498) #13	POC5 (ENSOARG00020021712) #14	SV2C (ENSOARG00020021763) #15	IQGAP2 (ENSOARG00020021962) #18	F2RL2 (ENSOARG00020022973) #17	F2R (ENSOARG00020022990) #19	F2RL1 (ENSOARG00020023002) #20	S100Z (ENSOARG00020023021) #22	CRHBP (ENSOARG00020023047)	AGGF1 (ENSOARG00020023108) #24	ZBED3 (ENSOARG00020023150) #25	PDE8B (ENSOARG00020023251) #26	ENSOARG00020024389	WDR41 (ENSOARG00020024404) #27	OTP (ENSOARG00020024451) #28	TBCA (ENSOARG00020024464) #29	AP3B1 (ENSOARG00020024527) #31	ENSOARG00020024603	SCAMP1 (ENSOARG00020024609) #32	ENSOARG00020024626 #22	LHFPL2 (ENSOARG00020024639) #33	ARSB (ENSOARG00020002992) #35	DMGDH (ENSOARG00020003036) #36
Rambouillet Sheep	MODERN SPECIES	23	F2RL2 (ENSOARG00020022973) #17	F2R (ENSOARG00020022990) #19	F2RL1 (ENSOARG00020023002) #20	S100Z (ENSOARG00020023021) #22	CRHBP (ENSOARG00020023047)	AGGF1 (ENSOARG00020023108) #24	ZBED3 (ENSOARG00020023150) #25	PDE8B (ENSOARG00020023251) #26	ENSOARG00020024389	WDR41 (ENSOARG00020024404) #27	OTP (ENSOARG00020024451) #28	TBCA (ENSOARG00020024464) #29	AP3B1 (ENSOARG00020024527) #31	ENSOARG00020024603	SCAMP1 (ENSOARG00020024609) #32	ENSOARG00020024626 #22	LHFPL2 (ENSOARG00020024639) #33	ARSB (ENSOARG00020002992) #35	DMGDH (ENSOARG00020003036) #36	BHMT (ENSOARG00020003124) ##37	JMY (ENSOARG00020003148)	HOMER1 (ENSOARG00020003237)	TENT2 (ENSOARG00020003488)	CMYA5 (ENSOARG00020003611)	MTX3 (ENSOARG00020004194)	THBS4 (ENSOARG00020004359)	SERINC5 (ENSOARG00020004451)	GNPNAT1 (ENSOARG00020004685)	STYX (ENSOARG00020004723)	ENSOARG00020004750	PSMC6 (ENSOARG00020004771)
Goat	MODERN SPECIES	1	SFXN1 (ENSCHIG00000022473)	DRD1 (ENSCHIG00000024371) #7	ENSCHIG00000015735	GCNT4 (ENSCHIG00000008602) #8	ENSCHIG00000021264 #10	HMGCR (ENSCHIG00000015556) #11	CERT1 (ENSCHIG00000021950) #12	POLK (ENSCHIG00000008105) #13	ENSCHIG00000008486	POC5 (ENSCHIG00000009080) #14	SV2C (ENSCHIG00000016655) #15	F2RL2 (ENSCHIG00000002096) #17	IQGAP2 (ENSCHIG00000020854) #18	F2R (ENSCHIG00000022474) #19	F2RL1 (ENSCHIG00000026366) #20	S100Z (ENSCHIG00000018486) #22	CRHBP (ENSCHIG00000024251)	AGGF1 (ENSCHIG00000012662) #24	ZBED3 (ENSCHIG00000004171) #25	PDE8B (ENSCHIG00000023152) #26	WDR41 (ENSCHIG00000023139) #27	OTP (ENSCHIG00000018904) #28	TBCA (ENSCHIG00000021233) #29	AP3B1 (ENSCHIG00000018755) #31	ENSCHIG00000026947	SCAMP1 (ENSCHIG00000025008) #32	LHFPL2 (ENSCHIG00000014180) #33	ARSB (ENSCHIG00000001349) #35	DMGDH (ENSCHIG00000021924) #36	BHMT2 (ENSCHIG00000027021) #37	BHMT (ENSCHIG00000009078) ##37
Siberian musk deer	MODERN SPECIES	69	SFXN1 (ENSMMSG00000014529)	DRD1 (ENSMMSG00000014544) #7	ENSMMSG00000014552	ENSMMSG00000014567	GCNT4 (ENSMMSG00000014582) #8	ANKRD31 (ENSMMSG00000014614) #10	HMGCR (ENSMMSG00000014812) #11	CERT1 (ENSMMSG00000014921) #12	POLK (ENSMMSG00000015182) #13	POC5 (ENSMMSG00000015294) #14	SV2C (ENSMMSG00000015327) #15	IQGAP2 (ENSMMSG00000015431) #18	F2RL2 (ENSMMSG00000015650) #17	F2R (ENSMMSG00000015666) #19	F2RL1 (ENSMMSG00000015677) #20	S100Z (ENSMMSG00000015687) #22	CRHBP (ENSMMSG00000015697)	ENSMMSG00000015737	AGGF1 (ENSMMSG00000015751) #24	ZBED3 (ENSMMSG00000015777) #25	PDE8B (ENSMMSG00000015917) #26	WDR41 (ENSMMSG00000017180) #27	OTP (ENSMMSG00000017274) #28	ENSMMSG00000017301	ENSMMSG00000017442	AP3B1 (ENSMMSG00000017470) #31	SCAMP1 (ENSMMSG00000017674) #32	LHFPL2 (ENSMMSG00000017736) #33	ARSB (ENSMMSG00000017759) #35	DMGDH (ENSMMSG00000017858) #36	BHMT2 (ENSMMSG00000017965) #37