Pecora	ANCESTRAL SPECIES	6	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00940000154170.A	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00950000183076.b #19	ENSGT01050000244840.A.b.b #18	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37	ENSGT00510000046704.b.a
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00940000154170.A	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00950000183076.b #19	ENSGT01050000244840.A.b.b #18	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37	ENSGT00510000046704.b.a
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00940000154170.A	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00950000183076.b #19	ENSGT01050000244840.A.b.b #18	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37	ENSGT00510000046704.b.a
Caprinae	ANCESTRAL SPECIES	30	ENSGT00950000182938.a	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT01050000244840.A.b.b #18	ENSGT00950000183076.b #19	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37	ENSGT00510000046704.b.a
Goat	MODERN SPECIES	1	SFXN1 (ENSCHIG00000022473) #7	DRD1 (ENSCHIG00000024371) #8	ENSCHIG00000015735 #9	GCNT4 (ENSCHIG00000008602) #10	ENSCHIG00000021264 #11	HMGCR (ENSCHIG00000015556) #12	CERT1 (ENSCHIG00000021950) #13	POLK (ENSCHIG00000008105) #14	ENSCHIG00000008486 #15	POC5 (ENSCHIG00000009080) #16	SV2C (ENSCHIG00000016655) #17	F2RL2 (ENSCHIG00000002096) #18	IQGAP2 (ENSCHIG00000020854) #19	F2R (ENSCHIG00000022474) #20	F2RL1 (ENSCHIG00000026366) #21	S100Z (ENSCHIG00000018486) #22	CRHBP (ENSCHIG00000024251) #23	AGGF1 (ENSCHIG00000012662) #24	ZBED3 (ENSCHIG00000004171) #25	PDE8B (ENSCHIG00000023152) #26	WDR41 (ENSCHIG00000023139) #27	OTP (ENSCHIG00000018904) #28	TBCA (ENSCHIG00000021233) #29	AP3B1 (ENSCHIG00000018755) #30	ENSCHIG00000026947 #31	SCAMP1 (ENSCHIG00000025008) #32	LHFPL2 (ENSCHIG00000014180) #33	ARSB (ENSCHIG00000001349) #34	DMGDH (ENSCHIG00000021924) #35	BHMT2 (ENSCHIG00000027021) #36	BHMT (ENSCHIG00000009078) #37
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	23	CPLX2 (ENSOARG00020020263)	HRH2 (ENSOARG00020020329)	SFXN1 (ENSOARG00020020382) #7	ENSOARG00020020572 #8	GCNT4 (ENSOARG00020020622) #10	ENSOARG00020020636 #11	HMGCR (ENSOARG00020020760) #12	CERT1 (ENSOARG00020020967) #13	POLK (ENSOARG00020021498) #14	POC5 (ENSOARG00020021712) #16	SV2C (ENSOARG00020021763) #17	IQGAP2 (ENSOARG00020021962) #19	F2RL2 (ENSOARG00020022973) #18	F2R (ENSOARG00020022990) #20	F2RL1 (ENSOARG00020023002) #21	S100Z (ENSOARG00020023021) #22	CRHBP (ENSOARG00020023047) #23	AGGF1 (ENSOARG00020023108) #24	ZBED3 (ENSOARG00020023150) #25	PDE8B (ENSOARG00020023251) #26	ENSOARG00020024389	WDR41 (ENSOARG00020024404) #27	OTP (ENSOARG00020024451) #28	TBCA (ENSOARG00020024464) #29	AP3B1 (ENSOARG00020024527) #30	ENSOARG00020024603 #31	SCAMP1 (ENSOARG00020024609) #32	ENSOARG00020024626 #22	LHFPL2 (ENSOARG00020024639) #33	ARSB (ENSOARG00020002992) #34	DMGDH (ENSOARG00020003036) #35
Rambouillet Sheep	MODERN SPECIES	23	F2RL2 (ENSOARG00020022973) #18	F2R (ENSOARG00020022990) #20	F2RL1 (ENSOARG00020023002) #21	S100Z (ENSOARG00020023021) #22	CRHBP (ENSOARG00020023047) #23	AGGF1 (ENSOARG00020023108) #24	ZBED3 (ENSOARG00020023150) #25	PDE8B (ENSOARG00020023251) #26	ENSOARG00020024389	WDR41 (ENSOARG00020024404) #27	OTP (ENSOARG00020024451) #28	TBCA (ENSOARG00020024464) #29	AP3B1 (ENSOARG00020024527) #30	ENSOARG00020024603 #31	SCAMP1 (ENSOARG00020024609) #32	ENSOARG00020024626 #22	LHFPL2 (ENSOARG00020024639) #33	ARSB (ENSOARG00020002992) #34	DMGDH (ENSOARG00020003036) #35	BHMT (ENSOARG00020003124) #37	JMY (ENSOARG00020003148)	HOMER1 (ENSOARG00020003237)	TENT2 (ENSOARG00020003488)	CMYA5 (ENSOARG00020003611)	MTX3 (ENSOARG00020004194)	THBS4 (ENSOARG00020004359)	SERINC5 (ENSOARG00020004451)	GNPNAT1 (ENSOARG00020004685)	STYX (ENSOARG00020004723)	ENSOARG00020004750	PSMC6 (ENSOARG00020004771)
Bovinae	ANCESTRAL SPECIES	33	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00940000154170.A	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00910000147370	ENSGT00950000183076.b #19	ENSGT01050000244840.A.b.b #18	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.j	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37
Bos	ANCESTRAL SPECIES	31	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00910000147370	ENSGT00950000183076.b #19	ENSGT01050000244840.A.b.b #18	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.i.a.a.b	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00910000147370	ENSGT00950000183076.b #19	ENSGT01050000244840.A.b.b #18	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00390000001362 #23	ENSGT00730000111121 #24	ENSGT00940000164103 #25	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.i.a.a.b	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37
Hybrid Bos Indicus	MODERN SPECIES	1					GCNT4 (ENSBIXG00005011458) #10	ANKRD31 (ENSBIXG00005011423) #11	HMGCR (ENSBIXG00005011318) #12	CERT1 (ENSBIXG00005011247) #13	POLK (ENSBIXG00005011147) #14	POC5 (ENSBIXG00005010780) #16	SV2C (ENSBIXG00005010694) #17	ENSBIXG00005007521	IQGAP2 (ENSBIXG00005010623) #19	F2RL2 (ENSBIXG00005010387) #18	F2R (ENSBIXG00005000862) #20	S100Z (ENSBIXG00005010347) #22	CRHBP (ENSBIXG00005000840) #23	AGGF1 (ENSBIXG00005010286) #24	ENSBIXG00005010267	PDE8B (ENSBIXG00005010189) #26	ENSBIXG00005000677	WDR41 (ENSBIXG00005009893) #27	OTP (ENSBIXG00005009799) #28	TBCA (ENSBIXG00005000599) #29	ENSBIXG00005009736	AP3B1 (ENSBIXG00005009658) #30	ENSBIXG00005009460	SCAMP1 (ENSBIXG00005009438) #32	ARSB (ENSBIXG00005009357) #34	ENSBIXG00005009344	DMGDH (ENSBIXG00005009320) #35
Cow	MODERN SPECIES	1	HRH2 (ENSBTAG00000044071)	SFXN1 (ENSBTAG00000014536) #7	DRD1 (ENSBTAG00000047719) #8	GCNT4 (ENSBTAG00000050091) #10	ANKRD31 (ENSBTAG00000024878) #11	HMGCR (ENSBTAG00000007840) #12	CERT1 (ENSBTAG00000000081) #13	POLK (ENSBTAG00000004028) #14	POC5 (ENSBTAG00000007114) #16	SV2C (ENSBTAG00000017507) #17	ENSBTAG00000052974	IQGAP2 (ENSBTAG00000000897) #19	F2RL2 (ENSBTAG00000000898) #18	F2R (ENSBTAG00000020199) #20	F2RL1 (ENSBTAG00000034848) #21	S100Z (ENSBTAG00000020201) #22	CRHBP (ENSBTAG00000020202) #23	AGGF1 (ENSBTAG00000034823) #24	ZBED3 (ENSBTAG00000052845) #25	PDE8B (ENSBTAG00000020205) #26	WDR41 (ENSBTAG00000020212) #27	OTP (ENSBTAG00000009249) #28	TBCA (ENSBTAG00000003263) #29	ENSBTAG00000052130	AP3B1 (ENSBTAG00000005016) #30	SCAMP1 (ENSBTAG00000007371) #32	LHFPL2 (ENSBTAG00000007374) #33	ARSB (ENSBTAG00000008341) #34	DMGDH (ENSBTAG00000002110) #35	BHMT2 (ENSBTAG00000038234) #36	BHMT (ENSBTAG00000002255) #37
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b #7	ENSGT00940000155857 #8	ENSGT00940000159721 #10	ENSGT00940000162618 #11	ENSGT00940000155305 #12	ENSGT00940000155123.b #13	ENSGT00940000156667 #14	ENSGT00390000004454 #16	ENSGT00950000182940.b.b #17	ENSGT00910000147370	ENSGT01050000244840.A.b.b #18	ENSGT00950000183076.b #19	ENSGT01050000244840.A.a.b #20	ENSGT01050000244840.A.a.a #21	ENSGT00940000161125 #22	ENSGT00730000111121 #24	ENSGT00940000157817 #26	ENSGT00390000017026 #27	ENSGT00940000159952 #28	ENSGT00390000009710 #29	ENSGT00390000001830.i.a.a.b	ENSGT00940000157603 #30	ENSGT00940000157310 #32	ENSGT00990000203589.b.b #33	ENSGT00940000158270 #34	ENSGT00940000158176 #35	ENSGT00390000003122.c.b #36	ENSGT00390000003122.c.a #37	ENSGT00510000046704.b.a	ENSGT00940000156354
Domestic yak	MODERN SPECIES	2	DRD1 (ENSBGRG00000011292) #8	GCNT4 (ENSBGRG00000011247) #10	ENSBGRG00000011228	ANKRD31 (ENSBGRG00000010828) #11	HMGCR (ENSBGRG00000010597) #12	CERT1 (ENSBGRG00000009779) #13	POLK (ENSBGRG00000009306) #14	POC5 (ENSBGRG00000008737) #16	SV2C (ENSBGRG00000008621) #17	ENSBGRG00000008593	F2RL2 (ENSBGRG00000008567) #18	IQGAP2 (ENSBGRG00000007931) #19	F2R (ENSBGRG00000007892) #20	F2RL1 (ENSBGRG00000007822) #21	ENSBGRG00000007803	S100Z (ENSBGRG00000007761) #22	ENSBGRG00000007739	AGGF1 (ENSBGRG00000007412) #24	ZBED3 (ENSBGRG00000007380) #25	PDE8B (ENSBGRG00000006555) #26	WDR41 (ENSBGRG00000006363) #27	OTP (ENSBGRG00000006298) #28	TBCA (ENSBGRG00000006236) #29	ENSBGRG00000006222	AP3B1 (ENSBGRG00000006021) #30	SCAMP1 (ENSBGRG00000005900) #32	LHFPL2 (ENSBGRG00000005875) #33	ENSBGRG00000005848	ARSB (ENSBGRG00000005773) #34	DMGDH (ENSBGRG00000005663) #35	ENSBGRG00000005598 #36
Wild yak	MODERN SPECIES	297				GCNT4 (ENSBMUG00000012260) #10	ANKRD31 (ENSBMUG00000012237) #11	HMGCR (ENSBMUG00000012171) #12	CERT1 (ENSBMUG00000011873) #13	POLK (ENSBMUG00000011634) #14	POC5 (ENSBMUG00000011568) #16	SV2C (ENSBMUG00000011496) #17	ENSBMUG00000011462	F2RL2 (ENSBMUG00000011445) #18	IQGAP2 (ENSBMUG00000011350) #19	F2R (ENSBMUG00000011164) #20	F2RL1 (ENSBMUG00000011152) #21	S100Z (ENSBMUG00000011148) #22	AGGF1 (ENSBMUG00000011125) #24	PDE8B (ENSBMUG00000011054) #26	WDR41 (ENSBMUG00000010747) #27	OTP (ENSBMUG00000010682) #28	TBCA (ENSBMUG00000010673) #29	ENSBMUG00000010660	ENSBMUG00000010637
American bison	MODERN SPECIES	3169	ENSBBBG00000005945	ENSBBBG00000022510	GCNT4 (ENSBBBG00000005939) #10	ANKRD31 (ENSBBBG00000022499) #11	HMGCR (ENSBBBG00000005907) #12	CERT1 (ENSBBBG00000022291) #13	POLK (ENSBBBG00000021965) #14	ANKDD1B (ENSBBBG00000008030)	POC5 (ENSBBBG00000021773) #16	SV2C (ENSBBBG00000006918) #17	ENSBBBG00000021689	IQGAP2 (ENSBBBG00000021677) #19	F2RL2 (ENSBBBG00000021481) #18	F2R (ENSBBBG00000021478) #20	F2RL1 (ENSBBBG00000021471) #21	S100Z (ENSBBBG00000021469) #22	CRHBP (ENSBBBG00000021464) #23	AGGF1 (ENSBBBG00000021443) #24	PDE8B (ENSBBBG00000021396) #26	WDR41 (ENSBBBG00000021018) #27	TBCA (ENSBBBG00000005639) #29	ENSBBBG00000005636	AP3B1 (ENSBBBG00000005629) #30	SCAMP1 (ENSBBBG00000020857) #32	LHFPL2 (ENSBBBG00000020821) #33	ARSB (ENSBBBG00000020814) #34
Siberian musk deer	MODERN SPECIES	69	SFXN1 (ENSMMSG00000014529) #7	DRD1 (ENSMMSG00000014544) #8	ENSMMSG00000014552	ENSMMSG00000014567	GCNT4 (ENSMMSG00000014582) #10	ANKRD31 (ENSMMSG00000014614) #11	HMGCR (ENSMMSG00000014812) #12	CERT1 (ENSMMSG00000014921) #13	POLK (ENSMMSG00000015182) #14	POC5 (ENSMMSG00000015294) #16	SV2C (ENSMMSG00000015327) #17	IQGAP2 (ENSMMSG00000015431) #19	F2RL2 (ENSMMSG00000015650) #18	F2R (ENSMMSG00000015666) #20	F2RL1 (ENSMMSG00000015677) #21	S100Z (ENSMMSG00000015687) #22	CRHBP (ENSMMSG00000015697) #23	ENSMMSG00000015737	AGGF1 (ENSMMSG00000015751) #24	ZBED3 (ENSMMSG00000015777) #25	PDE8B (ENSMMSG00000015917) #26	WDR41 (ENSMMSG00000017180) #27	OTP (ENSMMSG00000017274) #28	ENSMMSG00000017301	ENSMMSG00000017442	AP3B1 (ENSMMSG00000017470) #30	SCAMP1 (ENSMMSG00000017674) #32	LHFPL2 (ENSMMSG00000017736) #33	ARSB (ENSMMSG00000017759) #34	DMGDH (ENSMMSG00000017858) #35	BHMT2 (ENSMMSG00000017965) #36
Yarkand deer	MODERN SPECIES	3	HRH2 (ENSCHYG00000005212)	SFXN1 (ENSCHYG00000005262) #7	DRD1 (ENSCHYG00000005319) #8	GCNT4 (ENSCHYG00000005367) #10	ANKRD31 (ENSCHYG00000005425) #11	HMGCR (ENSCHYG00000005715) #12	CERT1 (ENSCHYG00000005851) #13	POLK (ENSCHYG00000006041) #14	POC5 (ENSCHYG00000006247) #16	SV2C (ENSCHYG00000006307) #17	IQGAP2 (ENSCHYG00000006385) #19	F2RL2 (ENSCHYG00000006675) #18	F2R (ENSCHYG00000006697) #20	ENSCHYG00000006719	F2RL1 (ENSCHYG00000006741) #21	S100Z (ENSCHYG00000006771) #22	CRHBP (ENSCHYG00000006799) #23	AGGF1 (ENSCHYG00000006866) #24	ZBED3 (ENSCHYG00000006906) #25	ENSCHYG00000006937	ENSCHYG00000006952	ENSCHYG00000006962 #26	ENSCHYG00000007028 #26	WDR41 (ENSCHYG00000007090) #27	OTP (ENSCHYG00000007305) #28	TBCA (ENSCHYG00000007320) #29	ENSCHYG00000007338	ENSCHYG00000007344	ENSCHYG00000007356	AP3B1 (ENSCHYG00000007402) #30	SCAMP1 (ENSCHYG00000007687) #32