Mus_A	ANCESTRAL SPECIES	16	ENSGT01030000234598.b.b	ENSGT00950000186001	ENSGT00390000010028	ENSGT00390000009753 #7	ENSGT00530000064783 #8	ENSGT01070000255287 #9	ENSGT00390000001738 #10	ENSGT00390000000417.a.a.b.a.a.b #11	ENSGT00390000017147 #12	ENSGT00390000007479.y.a.g.a #14	ENSGT00390000007479.y.a.g.b #13	ENSGT00390000017253 #15	ENSGT00940000157743 #16	ENSGT00940000159147 #17	ENSGT00940000162438 #18	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Ryukyu mouse	MODERN SPECIES	10	Zfpl1 (MGP_CAROLIEiJ_G0022592) #7	Tmem262 (MGP_CAROLIEiJ_G0022591) #8	MGP_CAROLIEiJ_G0022590 #9	Vps51 (MGP_CAROLIEiJ_G0022589) #10	Tm7sf2 (MGP_CAROLIEiJ_G0022588) #11	Znhit2 (MGP_CAROLIEiJ_G0022587) #12	MGP_CAROLIEiJ_G0022586 #13	MGP_CAROLIEiJ_G0022585 #14	Mrpl49 (MGP_CAROLIEiJ_G0022584) #15	Syvn1 (MGP_CAROLIEiJ_G0022583) #16	Capn1 (MGP_CAROLIEiJ_G0022582) #17	Slc22a20 (MGP_CAROLIEiJ_G0022581) #18	MGP_CAROLIEiJ_G0022580 #19	MGP_CAROLIEiJ_G0022579 #20	MGP_CAROLIEiJ_G0022578 #21	Pola2 (MGP_CAROLIEiJ_G0022577) #22	Cdc42ep2 (MGP_CAROLIEiJ_G0022576) #23	Dpf2 (MGP_CAROLIEiJ_G0022575) #24	Tigd3 (MGP_CAROLIEiJ_G0022574) #25	Slc25a45 (MGP_CAROLIEiJ_G0022573) #26	Frmd8 (MGP_CAROLIEiJ_G0022572) #27	Scyl1 (MGP_CAROLIEiJ_G0022571) #28	Ltbp3 (MGP_CAROLIEiJ_G0022570) #29	Znrd2 (MGP_CAROLIEiJ_G0022569) #30	Fam89b (MGP_CAROLIEiJ_G0022568) #31	Ehbp1l1 (MGP_CAROLIEiJ_G0022567) #32	Kcnk7 (MGP_CAROLIEiJ_G0022566) #33	Map3k11 (MGP_CAROLIEiJ_G0022565) #34	Pcnx3 (MGP_CAROLIEiJ_G0022564) #35	Sipa1 (MGP_CAROLIEiJ_G0022563) #36	Rela (MGP_CAROLIEiJ_G0022562) #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00950000186001	ENSGT00390000010028	ENSGT00390000009753 #7	ENSGT00530000064783 #8	ENSGT01070000255287 #9	ENSGT00390000001738 #10	ENSGT00390000000417.a.a.b.a.a.b #11	ENSGT00390000017147 #12	ENSGT00390000007479.y.a.g.a #14	ENSGT00390000007479.y.a.g.b #13	ENSGT00390000007479.y.a.h ##13	ENSGT00390000017253 #15	ENSGT00940000157743 #16	ENSGT00940000159147 #17	ENSGT00940000162438 #18	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000160988	ENSGT01030000234598.b.b	ENSGT00390000010028	ENSGT00390000009753 #7	ENSGT00530000064783 #8	ENSGT01070000255287 #9	ENSGT00390000001738 #10	ENSGT00390000000417.a.a.b.a.a.b #11	ENSGT00390000017147 #12	ENSGT00390000007479.y.a.g.a #14	ENSGT00390000007479.y.a.g.b #13	ENSGT00390000017253 #15	ENSGT00940000157743 #16	ENSGT00940000159147 #17	ENSGT00940000162438 #18	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Steppe mouse	MODERN SPECIES	3175	Sac3d1 (ENSMSIG00000030215)	Naaladl1 (ENSMSIG00000030219)	ENSMSIG00000030228	Zfpl1 (ENSMSIG00000030236) #7	Tmem262 (ENSMSIG00000030241) #8	Vps51 (ENSMSIG00000030243) #10	Tm7sf2 (ENSMSIG00000030251) #11	Znhit2 (ENSMSIG00000030268) #12	Fau (ENSMSIG00000030270) ##13	Mrpl49 (ENSMSIG00000030271) #15	Syvn1 (ENSMSIG00000030275) #16	ENSMSIG00000030289	ENSMSIG00000030290	Capn1 (ENSMSIG00000030291) #17	Slc22a20 (ENSMSIG00000030294) #18	Pola2 (ENSMSIG00000030297) #22	Cdc42ep2 (ENSMSIG00000030305) #23	Dpf2 (ENSMSIG00000030307) #24	Tigd3 (ENSMSIG00000030313) #25	Slc25a45 (ENSMSIG00000030315) #26	Frmd8 (ENSMSIG00000030316) #27	ENSMSIG00000030318	Scyl1 (ENSMSIG00000000177) #28	Ltbp3 (ENSMSIG00000000265) #29	ENSMSIG00000000454 #30	Fam89b (ENSMSIG00000000508) #31	Ehbp1l1 (ENSMSIG00000000552) #32	Kcnk7 (ENSMSIG00000000729) #33	Map3k11 (ENSMSIG00000000749) #34	Pcnx3 (ENSMSIG00000000821) #35	Sipa1 (ENSMSIG00000001174) #36
spretus	MODERN SPECIES	10	MGP_SPRETEiJ_G0023506	Naaladl1 (MGP_SPRETEiJ_G0023505)	Cdca5 (MGP_SPRETEiJ_G0023504)	Zfpl1 (MGP_SPRETEiJ_G0023503) #7	Tmem262 (MGP_SPRETEiJ_G0023502) #8	MGP_SPRETEiJ_G0023501 #9	Vps51 (MGP_SPRETEiJ_G0023500) #10	Tm7sf2 (MGP_SPRETEiJ_G0023499) #11	Znhit2 (MGP_SPRETEiJ_G0023498) #12	MGP_SPRETEiJ_G0023497 #13	MGP_SPRETEiJ_G0023496 #14	Mrpl49 (MGP_SPRETEiJ_G0023495) #15	Syvn1 (MGP_SPRETEiJ_G0023494) #16	Capn1 (MGP_SPRETEiJ_G0023493) #17	Slc22a20 (MGP_SPRETEiJ_G0023492) #18	Pola2 (MGP_SPRETEiJ_G0023491) #22	Cdc42ep2 (MGP_SPRETEiJ_G0023490) #23	Dpf2 (MGP_SPRETEiJ_G0023489) #24	Tigd3 (MGP_SPRETEiJ_G0023488) #25	Slc25a45 (MGP_SPRETEiJ_G0023487) #26	Frmd8 (MGP_SPRETEiJ_G0023486) #27	Scyl1 (MGP_SPRETEiJ_G0023485) #28	Ltbp3 (MGP_SPRETEiJ_G0023484) #29	Znrd2 (MGP_SPRETEiJ_G0023483) #30	Fam89b (MGP_SPRETEiJ_G0023482) #31	Ehbp1l1 (MGP_SPRETEiJ_G0023481) #32	Kcnk7 (MGP_SPRETEiJ_G0023480) #33	Map3k11 (MGP_SPRETEiJ_G0023479) #34	Pcnx3 (MGP_SPRETEiJ_G0023478) #35	Sipa1 (MGP_SPRETEiJ_G0023477) #36	Rela (MGP_SPRETEiJ_G0023476) #37
Mouse	MODERN SPECIES	10	Sac3d1 (ENSMUSG00000024790)	Naaladl1 (ENSMUSG00000054999)	Gm550 (ENSMUSG00000117666)	Cdca5 (ENSMUSG00000024791)	Zfpl1 (ENSMUSG00000024792) #7	Tmem262 (ENSMUSG00000047733) #8	Gm28374 (ENSMUSG00000100621)	Vps51 (ENSMUSG00000024797) #10	Tm7sf2 (ENSMUSG00000024799) #11	Znhit2 (ENSMUSG00000075227) #12	Fau (ENSMUSG00000038274) ##13	Mrpl49 (ENSMUSG00000007338) #15	Syvn1 (ENSMUSG00000024807) #16	Capn1 (ENSMUSG00000024942) #17	Slc22a20 (ENSMUSG00000037451) #18	Pola2 (ENSMUSG00000024833) #22	Cdc42ep2 (ENSMUSG00000045664) #23	Dpf2 (ENSMUSG00000024826) #24	Tigd3 (ENSMUSG00000044390) #25	Slc25a45 (ENSMUSG00000024818) #26	Frmd8 (ENSMUSG00000024816) #27	Scyl1 (ENSMUSG00000024941) #28	Ltbp3 (ENSMUSG00000024940) #29	Znrd2 (ENSMUSG00000079478) #30	Fam89b (ENSMUSG00000024939) #31	Ehbp1l1 (ENSMUSG00000024937) #32	Kcnk7 (ENSMUSG00000024936) #33	Map3k11 (ENSMUSG00000004054) #34	Pcnx3 (ENSMUSG00000054874) #35	Sipa1 (ENSMUSG00000056917) #36	Rela (ENSMUSG00000024927) #37