Murinae	ANCESTRAL SPECIES		ENSGT00940000160125	ENSGT00940000160988 #7	ENSGT01030000234598.b.b #8	ENSGT00950000186001	ENSGT00390000010028 #9	ENSGT00390000009753 #10	ENSGT00530000064783 #11	ENSGT00390000001738 #13	ENSGT00390000000417.a.a.b.a.a.b #14	ENSGT00390000017147 #15	ENSGT00390000007479.y.a #16	ENSGT00390000017253 #18	ENSGT00940000157743 #19	ENSGT00940000159147 #20	ENSGT00940000162438 #21	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Mus	ANCESTRAL SPECIES		ENSGT00940000160988 #7	ENSGT01030000234598.b.b #8	ENSGT00950000186001	ENSGT00390000010028 #9	ENSGT00390000009753 #10	ENSGT00530000064783 #11	ENSGT01070000255287 #12	ENSGT00390000001738 #13	ENSGT00390000000417.a.a.b.a.a.b #14	ENSGT00390000017147 #15	ENSGT00390000007479.y.a #16	ENSGT00390000017253 #18	ENSGT00940000157743 #19	ENSGT00940000159147 #20	ENSGT00940000162438 #21	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT01030000234598.b.b #8	ENSGT00950000186001	ENSGT00390000010028 #9	ENSGT00390000009753 #10	ENSGT00530000064783 #11	ENSGT01070000255287 #12	ENSGT00390000001738 #13	ENSGT00390000000417.a.a.b.a.a.b #14	ENSGT00390000017147 #15	ENSGT00390000007479.y.a.g.a #17	ENSGT00390000007479.y.a.g.b #16	ENSGT00390000017253 #18	ENSGT00940000157743 #19	ENSGT00940000159147 #20	ENSGT00940000162438 #21	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00950000186001	ENSGT00390000010028 #9	ENSGT00390000009753 #10	ENSGT00530000064783 #11	ENSGT01070000255287 #12	ENSGT00390000001738 #13	ENSGT00390000000417.a.a.b.a.a.b #14	ENSGT00390000017147 #15	ENSGT00390000007479.y.a.g.a #17	ENSGT00390000007479.y.a.g.b #16	ENSGT00390000007479.y.a.h ##16	ENSGT00390000017253 #18	ENSGT00940000157743 #19	ENSGT00940000159147 #20	ENSGT00940000162438 #21	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000160988 #7	ENSGT01030000234598.b.b #8	ENSGT00390000010028 #9	ENSGT00390000009753 #10	ENSGT00530000064783 #11	ENSGT01070000255287 #12	ENSGT00390000001738 #13	ENSGT00390000000417.a.a.b.a.a.b #14	ENSGT00390000017147 #15	ENSGT00390000007479.y.a.g.a #17	ENSGT00390000007479.y.a.g.b #16	ENSGT00390000017253 #18	ENSGT00940000157743 #19	ENSGT00940000159147 #20	ENSGT00940000162438 #21	ENSGT00390000016784 #22	ENSGT00940000161776 #23	ENSGT00940000155070 #24	ENSGT00940000162651 #25	ENSGT00940000161002 #26	ENSGT00530000063721.B #27	ENSGT00930000151054 #28	ENSGT00940000160285 #29	ENSGT00390000013169 #30	ENSGT00940000153370.a.a #31	ENSGT00940000161027 #32	ENSGT00940000161992 #33	ENSGT00940000161064 #34	ENSGT00940000158735 #35	ENSGT00940000160644 #36	ENSGT00940000159867 #37
spretus	MODERN SPECIES	10	MGP_SPRETEiJ_G0023506 #7	Naaladl1 (MGP_SPRETEiJ_G0023505) #8	Cdca5 (MGP_SPRETEiJ_G0023504) #9	Zfpl1 (MGP_SPRETEiJ_G0023503) #10	Tmem262 (MGP_SPRETEiJ_G0023502) #11	MGP_SPRETEiJ_G0023501 #12	Vps51 (MGP_SPRETEiJ_G0023500) #13	Tm7sf2 (MGP_SPRETEiJ_G0023499) #14	Znhit2 (MGP_SPRETEiJ_G0023498) #15	MGP_SPRETEiJ_G0023497 #16	MGP_SPRETEiJ_G0023496 #17	Mrpl49 (MGP_SPRETEiJ_G0023495) #18	Syvn1 (MGP_SPRETEiJ_G0023494) #19	Capn1 (MGP_SPRETEiJ_G0023493) #20	Slc22a20 (MGP_SPRETEiJ_G0023492) #21	Pola2 (MGP_SPRETEiJ_G0023491) #22	Cdc42ep2 (MGP_SPRETEiJ_G0023490) #23	Dpf2 (MGP_SPRETEiJ_G0023489) #24	Tigd3 (MGP_SPRETEiJ_G0023488) #25	Slc25a45 (MGP_SPRETEiJ_G0023487) #26	Frmd8 (MGP_SPRETEiJ_G0023486) #27	Scyl1 (MGP_SPRETEiJ_G0023485) #28	Ltbp3 (MGP_SPRETEiJ_G0023484) #29	Znrd2 (MGP_SPRETEiJ_G0023483) #30	Fam89b (MGP_SPRETEiJ_G0023482) #31	Ehbp1l1 (MGP_SPRETEiJ_G0023481) #32	Kcnk7 (MGP_SPRETEiJ_G0023480) #33	Map3k11 (MGP_SPRETEiJ_G0023479) #34	Pcnx3 (MGP_SPRETEiJ_G0023478) #35	Sipa1 (MGP_SPRETEiJ_G0023477) #36	Rela (MGP_SPRETEiJ_G0023476) #37
Steppe mouse	MODERN SPECIES	3175	Sac3d1 (ENSMSIG00000030215) #7	Naaladl1 (ENSMSIG00000030219) #8	ENSMSIG00000030228 #9	Zfpl1 (ENSMSIG00000030236) #10	Tmem262 (ENSMSIG00000030241) #11	Vps51 (ENSMSIG00000030243) #13	Tm7sf2 (ENSMSIG00000030251) #14	Znhit2 (ENSMSIG00000030268) #15	Fau (ENSMSIG00000030270) ##16	Mrpl49 (ENSMSIG00000030271) #18	Syvn1 (ENSMSIG00000030275) #19	ENSMSIG00000030289	ENSMSIG00000030290	Capn1 (ENSMSIG00000030291) #20	Slc22a20 (ENSMSIG00000030294) #21	Pola2 (ENSMSIG00000030297) #22	Cdc42ep2 (ENSMSIG00000030305) #23	Dpf2 (ENSMSIG00000030307) #24	Tigd3 (ENSMSIG00000030313) #25	Slc25a45 (ENSMSIG00000030315) #26	Frmd8 (ENSMSIG00000030316) #27	ENSMSIG00000030318	Scyl1 (ENSMSIG00000000177) #28	Ltbp3 (ENSMSIG00000000265) #29	ENSMSIG00000000454 #30	Fam89b (ENSMSIG00000000508) #31	Ehbp1l1 (ENSMSIG00000000552) #32	Kcnk7 (ENSMSIG00000000729) #33	Map3k11 (ENSMSIG00000000749) #34	Pcnx3 (ENSMSIG00000000821) #35	Sipa1 (ENSMSIG00000001174) #36
Mouse	MODERN SPECIES	10	Sac3d1 (ENSMUSG00000024790) #7	Naaladl1 (ENSMUSG00000054999) #8	Gm550 (ENSMUSG00000117666)	Cdca5 (ENSMUSG00000024791) #9	Zfpl1 (ENSMUSG00000024792) #10	Tmem262 (ENSMUSG00000047733) #11	Gm28374 (ENSMUSG00000100621)	Vps51 (ENSMUSG00000024797) #13	Tm7sf2 (ENSMUSG00000024799) #14	Znhit2 (ENSMUSG00000075227) #15	Fau (ENSMUSG00000038274) ##16	Mrpl49 (ENSMUSG00000007338) #18	Syvn1 (ENSMUSG00000024807) #19	Capn1 (ENSMUSG00000024942) #20	Slc22a20 (ENSMUSG00000037451) #21	Pola2 (ENSMUSG00000024833) #22	Cdc42ep2 (ENSMUSG00000045664) #23	Dpf2 (ENSMUSG00000024826) #24	Tigd3 (ENSMUSG00000044390) #25	Slc25a45 (ENSMUSG00000024818) #26	Frmd8 (ENSMUSG00000024816) #27	Scyl1 (ENSMUSG00000024941) #28	Ltbp3 (ENSMUSG00000024940) #29	Znrd2 (ENSMUSG00000079478) #30	Fam89b (ENSMUSG00000024939) #31	Ehbp1l1 (ENSMUSG00000024937) #32	Kcnk7 (ENSMUSG00000024936) #33	Map3k11 (ENSMUSG00000004054) #34	Pcnx3 (ENSMUSG00000054874) #35	Sipa1 (ENSMUSG00000056917) #36	Rela (ENSMUSG00000024927) #37
Ryukyu mouse	MODERN SPECIES	10	Zfpl1 (MGP_CAROLIEiJ_G0022592) #10	Tmem262 (MGP_CAROLIEiJ_G0022591) #11	MGP_CAROLIEiJ_G0022590 #12	Vps51 (MGP_CAROLIEiJ_G0022589) #13	Tm7sf2 (MGP_CAROLIEiJ_G0022588) #14	Znhit2 (MGP_CAROLIEiJ_G0022587) #15	MGP_CAROLIEiJ_G0022586 #16	MGP_CAROLIEiJ_G0022585 #17	Mrpl49 (MGP_CAROLIEiJ_G0022584) #18	Syvn1 (MGP_CAROLIEiJ_G0022583) #19	Capn1 (MGP_CAROLIEiJ_G0022582) #20	Slc22a20 (MGP_CAROLIEiJ_G0022581) #21	MGP_CAROLIEiJ_G0022580	MGP_CAROLIEiJ_G0022579	MGP_CAROLIEiJ_G0022578	Pola2 (MGP_CAROLIEiJ_G0022577) #22	Cdc42ep2 (MGP_CAROLIEiJ_G0022576) #23	Dpf2 (MGP_CAROLIEiJ_G0022575) #24	Tigd3 (MGP_CAROLIEiJ_G0022574) #25	Slc25a45 (MGP_CAROLIEiJ_G0022573) #26	Frmd8 (MGP_CAROLIEiJ_G0022572) #27	Scyl1 (MGP_CAROLIEiJ_G0022571) #28	Ltbp3 (MGP_CAROLIEiJ_G0022570) #29	Znrd2 (MGP_CAROLIEiJ_G0022569) #30	Fam89b (MGP_CAROLIEiJ_G0022568) #31	Ehbp1l1 (MGP_CAROLIEiJ_G0022567) #32	Kcnk7 (MGP_CAROLIEiJ_G0022566) #33	Map3k11 (MGP_CAROLIEiJ_G0022565) #34	Pcnx3 (MGP_CAROLIEiJ_G0022564) #35	Sipa1 (MGP_CAROLIEiJ_G0022563) #36	Rela (MGP_CAROLIEiJ_G0022562) #37
Shrew mouse	MODERN SPECIES		Sac3d1 (MGP_PahariEiJ_G0014089) #7	Naaladl1 (MGP_PahariEiJ_G0014088) #8	Cdca5 (MGP_PahariEiJ_G0014087) #9	Zfpl1 (MGP_PahariEiJ_G0014086) #10	Tmem262 (MGP_PahariEiJ_G0014085) #11	MGP_PahariEiJ_G0014084 #12	Vps51 (MGP_PahariEiJ_G0014083) #13	Tm7sf2 (MGP_PahariEiJ_G0014082) #14	Znhit2 (MGP_PahariEiJ_G0014081) #15	MGP_PahariEiJ_G0014080 #16	MGP_PahariEiJ_G0014079 #16	Mrpl49 (MGP_PahariEiJ_G0014078) #18	Syvn1 (MGP_PahariEiJ_G0014077) #19	Capn1 (MGP_PahariEiJ_G0014076) #20	Slc22a20 (MGP_PahariEiJ_G0014075) #21	Pola2 (MGP_PahariEiJ_G0014074) #22	Cdc42ep2 (MGP_PahariEiJ_G0014073) #23	Dpf2 (MGP_PahariEiJ_G0014072) #24	Tigd3 (MGP_PahariEiJ_G0014071) #25	Slc25a45 (MGP_PahariEiJ_G0014070) #26	Frmd8 (MGP_PahariEiJ_G0014069) #27	Scyl1 (MGP_PahariEiJ_G0014068) #28	Ltbp3 (MGP_PahariEiJ_G0014067) #29	Znrd2 (MGP_PahariEiJ_G0014066) #30	Fam89b (MGP_PahariEiJ_G0014065) #31	Ehbp1l1 (MGP_PahariEiJ_G0014064) #32	Kcnk7 (MGP_PahariEiJ_G0014063) #33	Map3k11 (MGP_PahariEiJ_G0014062) #34	Pcnx3 (MGP_PahariEiJ_G0014061) #35	Sipa1 (MGP_PahariEiJ_G0014060) #36	Rela (MGP_PahariEiJ_G0014059) #37
Rat	MODERN SPECIES		Arl2 (ENSRNOG00000021010)	Snx15 (ENSRNOG00000021007)	Sac3d1 (ENSRNOG00000021003) #7	Naaladl1 (ENSRNOG00000021000) #8	Cdca5 (ENSRNOG00000046635) #9	Zfpl1 (ENSRNOG00000050180) #10	Tmem262 (ENSRNOG00000047431) #11	Vps51 (ENSRNOG00000020996) #13	Tm7sf2 (ENSRNOG00000020989) #14	Znhit2 (ENSRNOG00000021794) #15	LOC687780 (ENSRNOG00000020982) #16	Syvn1 (ENSRNOG00000020950) #19	Mrpl49 (ENSRNOG00000020975) #18	Capn1 (ENSRNOG00000020935) #20	Slc22a20 (ENSRNOG00000022673) #21	Pola2 (ENSRNOG00000020906) #22	Cdc42ep2 (ENSRNOG00000020904) #23	Dpf2 (ENSRNOG00000020892) #24	Tigd3 (ENSRNOG00000023318) #25	Slc25a45 (ENSRNOG00000030616) #26	Frmd8 (ENSRNOG00000020881) #27	Scyl1 (ENSRNOG00000023668) #28	Ltbp3 (ENSRNOG00000020813) #29	Znrd2 (ENSRNOG00000012736) #30	Fam89b (ENSRNOG00000024239) #31	Ehbp1l1 (ENSRNOG00000056038) #32	Kcnk7 (ENSRNOG00000020784) #33	Map3k11 (ENSRNOG00000020773) #34	Pcnx3 (ENSRNOG00000020742) #35	Sipa1 (ENSRNOG00000020726) #36	Rela (ENSRNOG00000030888) #37