Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000177451 #21	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000177451 #21	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00940000162556.A.a.b ##20	ENSGT00390000010440.h #22	ENSGT00940000177451 #21	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000177451 #21	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00940000177451 #21	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Platyfish	MODERN SPECIES	7	strada (ENSXMAG00000027127) #7	rnf113a (ENSXMAG00000008169) #8	RUNDC3A (ENSXMAG00000020987) #9	ENSXMAG00000021920 #10	ENSXMAG00000023789 #11	ENSXMAG00000025357 #12	ENSXMAG00000008192 #13	ENSXMAG00000026407 #14	slc35b1 (ENSXMAG00000025030) #15	ndufa4a (ENSXMAG00000022120) #16	ENSXMAG00000026283 #17	NXPH3 (ENSXMAG00000008203) #18	NGFR (ENSXMAG00000008204) #19	ENSXMAG00000008208 #20	ENSXMAG00000026489 #21	selenow2b (ENSXMAG00000025994) #22	slc4a1a (ENSXMAG00000008209) #23	ubtf (ENSXMAG00000008248) #24	atxn7l3a (ENSXMAG00000008271) #25	tmub2 (ENSXMAG00000008276) #26	asb16 (ENSXMAG00000008279) #27	ENSXMAG00000008282 #28	ENSXMAG00000019737 #29	asic2 (ENSXMAG00000008283) #30	MPP3 (ENSXMAG00000008287) #31	ENSXMAG00000008316 #32	ZNF281 (ENSXMAG00000008317) #33	ENSXMAG00000027401 #34	tmem98 (ENSXMAG00000008324) #35	ENSXMAG00000008332 #36	ENSXMAG00000008337 #37
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00940000177451 #21	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Guppy	MODERN SPECIES	460	ddx42 (ENSPREG00000009926)	strada (ENSPREG00000009916) #7	rnf113a (ENSPREG00000009900) #8	ENSPREG00000009896 #10	ENSPREG00000009889 #11	ENSPREG00000009881 #12	RUNDC3A (ENSPREG00000009836) #9	ENSPREG00000009824 #13	slc35b1 (ENSPREG00000009804) #15	ndufa4a (ENSPREG00000009800) #16	ENSPREG00000009786 #18	ENSPREG00000009778	NGFR (ENSPREG00000009763) #19	ENSPREG00000009756 #20	ENSPREG00000009746 #21	selenow2b (ENSPREG00000009740) #22	slc4a1a (ENSPREG00000009682) #23	ubtf (ENSPREG00000009616) #24	atxn7l3a (ENSPREG00000009586) #25	tmub2 (ENSPREG00000009572) #26	asb16 (ENSPREG00000009560) #27	ENSPREG00000009541 #28	ENSPREG00000009532 ##30	ENSPREG00000009467	EZH1 (ENSPREG00000009410)	ENSPREG00000009360	PLEKHH3 (ENSPREG00000009324)	tubg1 (ENSPREG00000009293)	ENSPREG00000009272	mlx (ENSPREG00000009240)	FMNL1 (ENSPREG00000009204)
NAME_6	ANCESTRAL SPECIES	18	ENSGT00940000165921	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00940000177451 #21	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Sailfin molly	MODERN SPECIES	2944														ENSPLAG00000018601 #20	ENSPLAG00000018629 #21	MIEN1 (ENSPLAG00000018638) #22	slc4a1a (ENSPLAG00000018685) #23
NAME_4	ANCESTRAL SPECIES	47	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000177451 #21	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30
Sheepshead minnow	MODERN SPECIES	506													ENSCVAG00000003046 #18	ENSCVAG00000003050 #19	ENSCVAG00000003054 #20	selenow2b (ENSCVAG00000003068) #22	axin1 (ENSCVAG00000003102)	ENSCVAG00000003112	zfand2a (ENSCVAG00000003118)	UNCX (ENSCVAG00000003123)	micall2a (ENSCVAG00000003138)	INTS1 (ENSCVAG00000003222)	mafk (ENSCVAG00000003229)	tmem184a (ENSCVAG00000003246)	psmg3 (ENSCVAG00000003251)	ENSCVAG00000000105
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00730000110974.a #19	ENSGT00950000182883.a.a.a #18	ENSGT00940000154268.k.a #16	ENSGT00940000157900 #15	ENSGT00950000183046.a.b.l #13	ENSGT00940000158922.d #9	ENSGT01100000263643	ENSGT01100000263610 #10	ENSGT00390000016292 #8	ENSGT00940000158827 #7	ENSGT00940000156559	ENSGT00940000158377.a	ENSGT00940000158767	ENSGT00940000159539	ENSGT00940000165921	ENSGT00390000010440.h #22	ENSGT00940000177451 #21	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT01050000245493	ENSGT00940000154991.a.b ##30	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35
Mangrove rivulus	MODERN SPECIES	47	NGFR (ENSKMAG00000009613) #19	ENSKMAG00000009635 #18	ndufa4a (ENSKMAG00000009645) #16	slc35b1 (ENSKMAG00000009665) #15	ENSKMAG00000009693 #13	RUNDC3A (ENSKMAG00000009741) #9	ENSKMAG00000009809	ENSKMAG00000009817 #10	rnf113a (ENSKMAG00000009830) #8	strada (ENSKMAG00000009851) #7	ddx42 (ENSKMAG00000009914)	limd2 (ENSKMAG00000009984)	ENSKMAG00000009996	gfap (ENSKMAG00000010022)	kcnh6a (ENSKMAG00000010062)	selenow2b (ENSKMAG00000010109) #22	ENSKMAG00000010144 #21	slc4a1a (ENSKMAG00000010157) #23	ubtf (ENSKMAG00000010213) #24	atxn7l3a (ENSKMAG00000010250) #25	tmub2 (ENSKMAG00000010272) #26	asb16 (ENSKMAG00000010286) #27	ENSKMAG00000010309 #28	ENSKMAG00000010331	asic2 (ENSKMAG00000010367) #30	MPP3 (ENSKMAG00000010453) #31	ENSKMAG00000010668	ENSKMAG00000010686 #33	ENSKMAG00000010705 #34	tmem98 (ENSKMAG00000010741) #35	ENSKMAG00000010789 #36
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015000858	ENSNFUG00015000861	NDUFA4 (ENSNFUG00015000864) #16	slc35b1 (ENSNFUG00015000882) #15	FAM117A (ENSNFUG00015000930) #13	RUNDC3A (ENSNFUG00015000950) #9	ENSNFUG00015000975	ENSNFUG00015000981 #10	RNF113A (ENSNFUG00015000993) #8	STRADA (ENSNFUG00015001034) #7	ddx42 (ENSNFUG00015001120)	limd2 (ENSNFUG00015001158)	MAP3K3 (ENSNFUG00015001184)	GFAP (ENSNFUG00015001229)	kcnh6a (ENSNFUG00015001250)	selenow2b (ENSNFUG00015001263) #22	slc4a1a (ENSNFUG00015001398) #23	ubtf (ENSNFUG00015002045) #24	atxn7l3a (ENSNFUG00015002321) #25	tmub2 (ENSNFUG00015002335) #26	ASB16 (ENSNFUG00015002348) #27	ENSNFUG00015002363 #28	ENSNFUG00015002373 #29	ENSNFUG00015002379 ##30	ENSNFUG00015002383 #32	ZNF281 (ENSNFUG00015002394) #33	Nfu_g_1_007551 (ENSNFUG00015002399) #34	ENSNFUG00015002404	TMEM98 (ENSNFUG00015002405) #35	ENSNFUG00015002410 #36	ENSNFUG00015002419
Oryzias	ANCESTRAL SPECIES		ENSGT00940000165921	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00940000162556.A.a.b ##20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00980000200496	ENSGT01100000264505	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000165535 #29	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Indian medaka	MODERN SPECIES	9	gfap (ENSOMEG00000019912)	MAP3K3 (ENSOMEG00000020000)	limd2 (ENSOMEG00000020039)	ddx42 (ENSOMEG00000020093)	strada (ENSOMEG00000020155) #7	rnf113a (ENSOMEG00000020197) #8	ENSOMEG00000020212	ENSOMEG00000020221	RUNDC3A (ENSOMEG00000020257) #9	ENSOMEG00000020276 #13	slc35b1 (ENSOMEG00000020317) #15	ndufa4a (ENSOMEG00000020343) #16	NXPH3 (ENSOMEG00000020355) #18	ENSOMEG00000020420 #19	ENSOMEG00000020433 #20	selenow2b (ENSOMEG00000020458) #22	slc4a1a (ENSOMEG00000020519) #23	ubtf (ENSOMEG00000020580) #24	tmub2 (ENSOMEG00000020595) #26	ENSOMEG00000020693	asb16 (ENSOMEG00000020735) #27	ENSOMEG00000020806 #28	ENSOMEG00000020825 #29	asic2 (ENSOMEG00000020866) #30	MPP3 (ENSOMEG00000020973) #31	ENSOMEG00000021099 #32	ENSOMEG00000000555 #33	ENSOMEG00000021172 #34	tmem98 (ENSOMEG00000021183) #35	ENSOMEG00000021196 #36	ENSOMEG00000021242 #36
Javanese ricefish	MODERN SPECIES	22	gfap (ENSOJAG00000014458)	MAP3K3 (ENSOJAG00000014122)	limd2 (ENSOJAG00000014089)	ddx42 (ENSOJAG00000013862)	strada (ENSOJAG00000013385) #7	rnf113a (ENSOJAG00000013338) #8	ENSOJAG00000013331	ENSOJAG00000013328	RUNDC3A (ENSOJAG00000013280) #9	ENSOJAG00000013271 #13	slc35b1 (ENSOJAG00000013159) #15	ndufa4a (ENSOJAG00000013130) #16	NXPH3 (ENSOJAG00000013124) #18	NGFR (ENSOJAG00000013065) #19	ENSOJAG00000013060 #20	selenow2b (ENSOJAG00000013038) #22	slc4a1a (ENSOJAG00000012115) #23	ubtf (ENSOJAG00000012079) #24	ENSOJAG00000012046	ENSOJAG00000012037	asb16 (ENSOJAG00000012029) #27	ENSOJAG00000012006 #28	ENSOJAG00000012000	ENSOJAG00000011985	asic2 (ENSOJAG00000011839) #30	MPP3 (ENSOJAG00000011690) #31	ENSOJAG00000011658 #32	ZNF281 (ENSOJAG00000011655) #33	ENSOJAG00000011641 #34	tmem98 (ENSOJAG00000011625) #35	ENSOJAG00000011602 #36
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT01100000263610 #10	ENSGT01100000264505	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00940000162556.A.a.b ##20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Japanese Medaka HdrR	MODERN SPECIES	22	gfap (ENSORLG00000002346)	MAP3K3 (ENSORLG00000002357)	limd2 (ENSORLG00000023454)	ddx42 (ENSORLG00000002395)	strada (ENSORLG00000002426) #7	rnf113a (ENSORLG00000002442) #8	RUNDC3A (ENSORLG00000002487) #9	ENSORLG00000022546 #10	ENSORLG00000024605	ENSORLG00000002499 #13	slc35b1 (ENSORLG00000002514) #15	ndufa4a (ENSORLG00000002522) #16	NXPH3 (ENSORLG00000027745) #18	ENSORLG00000002533 #19	ENSORLG00000002537 #20	selenow2b (ENSORLG00000022585) #22	slc4a1a (ENSORLG00000002557) #23	ubtf (ENSORLG00000002593) #24	ENSORLG00000002605	tmub2 (ENSORLG00000002612) #26	asb16 (ENSORLG00000002620) #27	ENSORLG00000029612 #28	ENSORLG00000002626 ##30	asic2 (ENSORLG00000002768) #30	MPP3 (ENSORLG00000002793) #31	ENSORLG00000024122 #32	ZNF281 (ENSORLG00000002799) #33	ENSORLG00000029022	tmem98 (ENSORLG00000002812) #35	ENSORLG00000002829 #36	ENSORLG00000023248 #37
Chinese medaka	MODERN SPECIES	503												NXPH3 (ENSOSIG00000019097) #18	NGFR (ENSOSIG00000019109) #19	ENSOSIG00000019112 #20	ENSOSIG00000019113 ##20	selenow2b (ENSOSIG00000019115) #22	slc4a1a (ENSOSIG00000019123) #23	ubtf (ENSOSIG00000019158) #24	ENSOSIG00000019251	tmub2 (ENSOSIG00000019254) #26	asb16 (ENSOSIG00000019255) #27	ENSOSIG00000019262 #28	asic2 (ENSOSIG00000019279) #30	MPP3 (ENSOSIG00000019411) #31	ENSOSIG00000019472 #33	ENSOSIG00000019475 #34	tmem98 (ENSOSIG00000019478) #35	ENSOSIG00000019486 #36	ENSOSIG00000000171 #37	retsat.2 (ENSOSIG00000000177)	nmt1a (ENSOSIG00000000226)
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Pomacentridae	ANCESTRAL SPECIES	24	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Pomacentridae_A	ANCESTRAL SPECIES	15	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Amphiprion	ANCESTRAL SPECIES	9	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT01100000263981 #12	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Clown anemonefish	MODERN SPECIES	3408	ddx42 (ENSAOCG00000003520)	strada (ENSAOCG00000003498) #7	rnf113a (ENSAOCG00000003485) #8	RUNDC3A (ENSAOCG00000003476) #9	ENSAOCG00000003474 #10	ENSAOCG00000003470 #12	FAM117A (ENSAOCG00000002296) #13	slc35b1 (ENSAOCG00000003459) #15	ndufa4a (ENSAOCG00000003450) #16	spop (ENSAOCG00000003449)	NXPH3 (ENSAOCG00000003444) #18	ENSAOCG00000003439	NGFR (ENSAOCG00000003435) #19	ENSAOCG00000003427 #20	ENSAOCG00000003425 ##20	selenow2b (ENSAOCG00000003420) #22	slc4a1a (ENSAOCG00000003417) #23	ubtf (ENSAOCG00000003404) #24	atxn7l3a (ENSAOCG00000003384) #25	tmub2 (ENSAOCG00000003373) #26	asb16 (ENSAOCG00000003372) #27	ENSAOCG00000003365 #28	ENSAOCG00000003359 ##30	asic2 (ENSAOCG00000003355) #30
Orange clownfish	MODERN SPECIES	5	MAP3K3 (ENSAPEG00000000898)	limd2 (ENSAPEG00000000969)	ddx42 (ENSAPEG00000000984)	strada (ENSAPEG00000001041) #7	rnf113a (ENSAPEG00000001084) #8	RUNDC3A (ENSAPEG00000001102) #9	ENSAPEG00000001279 #10	ENSAPEG00000001288 #12	FAM117A (ENSAPEG00000001298) #13	slc35b1 (ENSAPEG00000001343) #15	ndufa4a (ENSAPEG00000001384) #16	spop (ENSAPEG00000001406)	NXPH3 (ENSAPEG00000001445) #18	NGFR (ENSAPEG00000001456) #19	ENSAPEG00000001491 #20	selenow2b (ENSAPEG00000001497) #22	slc4a1a (ENSAPEG00000001508) #23	ubtf (ENSAPEG00000001545) #24	atxn7l3a (ENSAPEG00000001614) #25	tmub2 (ENSAPEG00000001658) #26	asb16 (ENSAPEG00000001675) #27	ENSAPEG00000001708 #28	ENSAPEG00000001787 ##30	asic2 (ENSAPEG00000001805) #30	MPP3 (ENSAPEG00000001839) #31	ENSAPEG00000001915 #32	ZNF281 (ENSAPEG00000001948) #33	ENSAPEG00000002028 #34	tmem98 (ENSAPEG00000002035) #35	ENSAPEG00000002073 #36	ENSAPEG00000002146 #37
Spiny chromis	MODERN SPECIES	248														NGFR (ENSAPOG00000019180) #19	ENSAPOG00000019154 #20	selenow2b (ENSAPOG00000019146) #22	slc4a1a (ENSAPOG00000019116) #23	ubtf (ENSAPOG00000019015) #24	ENSAPOG00000018932	tmub2 (ENSAPOG00000018865) #26	asb16 (ENSAPOG00000018859) #27	ENSAPOG00000018810 #28	ENSAPOG00000018800 ##30	ENSAPOG00000018788	asic2 (ENSAPOG00000018769) #30
Bicolor damselfish	MODERN SPECIES	561															ENSSPAG00000017616 #20	selenow2b (ENSSPAG00000017621) #22	slc4a1a (ENSSPAG00000017645) #23	ubtf (ENSSPAG00000017777) #24	ENSSPAG00000017999	tmub2 (ENSSPAG00000018091) #26	ENSSPAG00000018104	asb16 (ENSSPAG00000018127) #27	ENSSPAG00000018139 #28	ENSSPAG00000018154 ##30	ENSSPAG00000018162 ##30
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000174710	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Midas cichlid	MODERN SPECIES	550	ddx42 (ENSACIG00000007376)	ENSACIG00000007408	strada (ENSACIG00000007423) #7	rnf113a (ENSACIG00000007458) #8	RUNDC3A (ENSACIG00000007483) #9	ENSACIG00000007506 #10	ENSACIG00000007510	FAM117A (ENSACIG00000007517) #13	slc35b1 (ENSACIG00000007536) #15	ndufa4a (ENSACIG00000007557) #16	spop (ENSACIG00000007656)	NXPH3 (ENSACIG00000007686) #18	NGFR (ENSACIG00000007695) #19	ENSACIG00000007725 #20	ENSACIG00000007737 ##20	selenow2b (ENSACIG00000007747) #22	slc4a1a (ENSACIG00000007777) #23	ubtf (ENSACIG00000007826) #24	atxn7l3a (ENSACIG00000007998) #25	tmub2 (ENSACIG00000008030) #26	asb16 (ENSACIG00000008051) #27	ENSACIG00000008083 #28	ENSACIG00000008095 ##30	asic2 (ENSACIG00000008109) #30	MPP3 (ENSACIG00000008139) #31	ENSACIG00000008218	ZNF281 (ENSACIG00000008230) #33	ENSACIG00000008252 #34	tmem98 (ENSACIG00000008272) #35	ENSACIG00000008286 #36	ENSACIG00000008308 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000174710	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Nile tilapia	MODERN SPECIES	16	strada (ENSONIG00000000738) #7	rnf113a (ENSONIG00000042350) #8	ENSONIG00000037829 #10	ENSONIG00000027590 #11	ENSONIG00000037074	RUNDC3A (ENSONIG00000000748) #9	FAM117A (ENSONIG00000000757) #13	slc35b1 (ENSONIG00000000758) #15	NDUFA4 (ENSONIG00000042265) #16	spop (ENSONIG00000000767)	NXPH3 (ENSONIG00000034515) #18	NGFR (ENSONIG00000028321) #19	ENSONIG00000027117	ENSONIG00000032741 #20	ENSONIG00000000776 #20	selenow2b (ENSONIG00000039635) #22	slc4a1a (ENSONIG00000000778) #23	ubtf (ENSONIG00000000796) #24	atxn7l3a (ENSONIG00000000812) #25	tmub2 (ENSONIG00000000814) #26	asb16 (ENSONIG00000000816) #27	ENSONIG00000000821 #28	ENSONIG00000030325 ##30	ENSONIG00000035362	asic2 (ENSONIG00000000822) #30	MPP3 (ENSONIG00000000827) #31	ENSONIG00000042435 #32	ZNF281 (ENSONIG00000000839) #33	ENSONIG00000000844 #34	tmem98 (ENSONIG00000031048) #35	ENSONIG00000000847 #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000174710	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000174710	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Burton s mouthbrooder	MODERN SPECIES	314	ddx42 (ENSHBUG00000008705)	strada (ENSHBUG00000008691) #7	rnf113a (ENSHBUG00000008626) #8	RUNDC3A (ENSHBUG00000008611) #9	ENSHBUG00000008602 #10	ENSHBUG00000008593 #11	ENSHBUG00000008586	FAM117A (ENSHBUG00000008573) #13	slc35b1 (ENSHBUG00000008561) #15	ndufa4a (ENSHBUG00000008529) #16	ENSHBUG00000008421	spop (ENSHBUG00000008411)	NXPH3 (ENSHBUG00000008374) #18	NGFR (ENSHBUG00000008364) #19	ENSHBUG00000008326 #20	selenow2b (ENSHBUG00000008305) #22	slc4a1a (ENSHBUG00000008288) #23	ubtf (ENSHBUG00000008228) #24	ENSHBUG00000008136	tmub2 (ENSHBUG00000008032) #26	asb16 (ENSHBUG00000008023) #27	ENSHBUG00000008014 #28	ENSHBUG00000008005 ##30	asic2 (ENSHBUG00000007991) #30	MPP3 (ENSHBUG00000007938) #31	ENSHBUG00000007768 #32	ZNF281 (ENSHBUG00000007749) #33	ENSHBUG00000007690 #34	tmem98 (ENSHBUG00000007681) #35	ENSHBUG00000007647 #36	ENSHBUG00000007590 #37
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000174710	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00950000182812.B.a.a.o.a.b	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36
P. nyererei	MODERN SPECIES	313	ddx42 (ENSPNYG00000013954)	ENSPNYG00000013940	strada (ENSPNYG00000013907) #7	rnf113a (ENSPNYG00000013863) #8	ENSPNYG00000013843 #10	ENSPNYG00000013835 #11	ENSPNYG00000013828	RUNDC3A (ENSPNYG00000013759) #9	FAM117A (ENSPNYG00000013696) #13	slc35b1 (ENSPNYG00000013642) #15	ndufa4a (ENSPNYG00000013603) #16	spop (ENSPNYG00000013554)	NXPH3 (ENSPNYG00000013519) #18	NGFR (ENSPNYG00000013507) #19	ENSPNYG00000013502 #20	selenow2b (ENSPNYG00000013474) #22	slc4a1a (ENSPNYG00000013439) #23	ubtf (ENSPNYG00000013380) #24	ENSPNYG00000013327	tmub2 (ENSPNYG00000013305) #26	asb16 (ENSPNYG00000013298) #27	ENSPNYG00000013279 #28	ENSPNYG00000013269 ##30	ENSPNYG00000013257	asic2 (ENSPNYG00000013229) #30	MPP3 (ENSPNYG00000013196) #31	ZNF281 (ENSPNYG00000013174) #33	ENSPNYG00000013167 #34	ENSPNYG00000013156 #34	tmem98 (ENSPNYG00000013142) #35	ENSPNYG00000013071 #36
Haplochromini_B	ANCESTRAL SPECIES	21	ENSGT00940000165921	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00950000182812.B.a.a.o.a.b	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36
Eastern happy	MODERN SPECIES	16	ddx42 (ENSACLG00000025113)	strada (ENSACLG00000025184) #7	rnf113a (ENSACLG00000025256) #8	RUNDC3A (ENSACLG00000025385) #9	ENSACLG00000025400 #10	ENSACLG00000025402 #11	ENSACLG00000025403	FAM117A (ENSACLG00000025413) #13	slc35b1 (ENSACLG00000025420) #15	ndufa4a (ENSACLG00000025435) #16	spop (ENSACLG00000025444)	NXPH3 (ENSACLG00000025484) #18	NGFR (ENSACLG00000025495) #19	ENSACLG00000025507 #20	ENSACLG00000025511 #20	selenow2b (ENSACLG00000025513) #22	slc4a1a (ENSACLG00000025519) #23	ubtf (ENSACLG00000025572) #24	ENSACLG00000025625	tmub2 (ENSACLG00000025653) #26	asb16 (ENSACLG00000025656) #27	ENSACLG00000025662 #28	ENSACLG00000025668 ##30	ENSACLG00000025677	asic2 (ENSACLG00000000027) #30	MPP3 (ENSACLG00000000062) #31	ENSACLG00000000105 #32	ZNF281 (ENSACLG00000000130) #33	ENSACLG00000000182	ENSACLG00000000189 #34	ENSACLG00000000213
Zebra mbuna	MODERN SPECIES	1107	MAP3K3 (ENSMZEG00005023117)	limd2 (ENSMZEG00005023112)	ddx42 (ENSMZEG00005023103)	strada (ENSMZEG00005023094) #7	rnf113a (ENSMZEG00005023086) #8	ENSMZEG00005023082 #10	ENSMZEG00005023079	RUNDC3A (ENSMZEG00005023078) #9	FAM117A (ENSMZEG00005023074) #13	slc35b1 (ENSMZEG00005023070) #15	ndufa4a (ENSMZEG00005023067) #16	spop (ENSMZEG00005023062)	NXPH3 (ENSMZEG00005023056) #18	NGFR (ENSMZEG00005023052) #19	ENSMZEG00005023049 #20	selenow2b (ENSMZEG00005023047) #22	slc4a1a (ENSMZEG00005023040) #23	ubtf (ENSMZEG00005023031) #24	ENSMZEG00005023025	tmub2 (ENSMZEG00005023020) #26	asb16 (ENSMZEG00005023018) #27	ENSMZEG00005023016 #28	ENSMZEG00005023014 ##30	ENSMZEG00005023010	asic2 (ENSMZEG00005023005) #30	MPP3 (ENSMZEG00005023002) #31	ENSMZEG00005022999 #32	ZNF281 (ENSMZEG00005022997) #33	ENSMZEG00005022996 #34	tmem98 (ENSMZEG00005022995) #35	ENSMZEG00005022983 #36
Lyretail cichlid	MODERN SPECIES	387	limd2 (ENSNBRG00000004508)	ddx42 (ENSNBRG00000004466)	strada (ENSNBRG00000004338) #7	rnf113a (ENSNBRG00000004314) #8	ENSNBRG00000004305 #10	ENSNBRG00000004298 #11	ENSNBRG00000004295	RUNDC3A (ENSNBRG00000004167) #9	ENSNBRG00000004146 #13	slc35b1 (ENSNBRG00000004123) #15	ndufa4a (ENSNBRG00000004018) #16	spop (ENSNBRG00000003973)	NXPH3 (ENSNBRG00000003957) #18	ENSNBRG00000003938 #19	ENSNBRG00000003923 #20	selenow2b (ENSNBRG00000003909) #22	ENSNBRG00000003894 #20	slc4a1a (ENSNBRG00000003876) #23	ubtf (ENSNBRG00000003814) #24	atxn7l3a (ENSNBRG00000003768) #25	tmub2 (ENSNBRG00000003750) #26	asb16 (ENSNBRG00000003724) #27	ENSNBRG00000003660 #28	ENSNBRG00000003635 ##30	asic2 (ENSNBRG00000003595) #30	MPP3 (ENSNBRG00000003561) #31	ENSNBRG00000003529 #33
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT01010000228294	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000165921	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37	ENSGT00390000017613	ENSGT00390000017837.a.v
Turbot	MODERN SPECIES	10	ENSSMAG00000012689	RBFOX3 (ENSSMAG00000012618)	ENSSMAG00000012597	ENSSMAG00000012518	ENSSMAG00000012442	ENSSMAG00000012449	ENSSMAG00000023265	FAM117A (ENSSMAG00000012429) #13	slc35b1 (ENSSMAG00000012406) #15	ndufa4a (ENSSMAG00000018128) #16	spop (ENSSMAG00000012241)	ENSSMAG00000025110	NXPH3 (ENSSMAG00000012235) #18	NGFR (ENSSMAG00000012202) #19	ENSSMAG00000012187 #20	selenow2b (ENSSMAG00000012167) #22	slc4a1a (ENSSMAG00000012131) #23	ubtf (ENSSMAG00000012016) #24	ENSSMAG00000011961	tmub2 (ENSSMAG00000012009) #26	asb16 (ENSSMAG00000011943) #27	ENSSMAG00000011904 #28	asic2 (ENSSMAG00000011371) #30	ENSSMAG00000011253 #31	ENSSMAG00000022986 #33	ENSSMAG00000011156 #34	tmem98 (ENSSMAG00000035913) #35	ENSSMAG00000010977 #36	ENSSMAG00000010962 #37	retsat.2 (ENSSMAG00000010932)	nmt1a (ENSSMAG00000010916)
Tongue sole	MODERN SPECIES	8	MAP3K3 (ENSCSEG00000021599)	limd2 (ENSCSEG00000021581)	ddx42 (ENSCSEG00000021574)	strada (ENSCSEG00000021572) #7	rnf113a (ENSCSEG00000021570) #8	ENSCSEG00000021569 #10	ENSCSEG00000021568 #11	ENSCSEG00000021567	RUNDC3A (ENSCSEG00000021566) #9	ENSCSEG00000021564 #13	slc35b1 (ENSCSEG00000021562) #15	ndufa4a (ENSCSEG00000021561) #16	ENSCSEG00000021559 #18	NGFR (ENSCSEG00000021522) #19	ENSCSEG00000021519 #20	selenow2b (ENSCSEG00000021516) #22	slc4a1a (ENSCSEG00000021512) #23	ubtf (ENSCSEG00000021498) #24	ENSCSEG00000021494	tmub2 (ENSCSEG00000021492) #26	asb16 (ENSCSEG00000021489) #27	ENSCSEG00000021486 #28	ENSCSEG00000021483 #29	olfm2a (ENSCSEG00000021480)	ZNF385C (ENSCSEG00000021383)	dhx58 (ENSCSEG00000021382)	mlx (ENSCSEG00000021380)	FMNL1 (ENSCSEG00000021373)	SRCIN1 (ENSCSEG00000021366)	ENSCSEG00000021280	wnt9b (ENSCSEG00000021279)
Carangaria_A	ANCESTRAL SPECIES	28	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT01010000228294	ENSGT00940000162556.G.d #20	ENSGT00940000162556.A.a.b.a ##20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b.g ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Seriola	ANCESTRAL SPECIES	15	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263981 #12	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT01010000228294	ENSGT00940000162556.G.d #20	ENSGT00940000162556.A.a.b.a ##20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b.g ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Greater amberjack	MODERN SPECIES	17	strada (ENSSDUG00000022236) #7	rnf113a (ENSSDUG00000022244) #8	RUNDC3A (ENSSDUG00000022256) #9	ENSSDUG00000022261 #10	ENSSDUG00000022264 #11	ENSSDUG00000022266 #12	FAM117A (ENSSDUG00000022268) #13	slc35b1 (ENSSDUG00000022272) #15	ndufa4a (ENSSDUG00000022275) #16	spop (ENSSDUG00000022277)	NXPH3 (ENSSDUG00000022289) #18	NGFR (ENSSDUG00000022292) #19	ENSSDUG00000022294	ENSSDUG00000022296 #20	ENSSDUG00000022299 ##20	selenow2b (ENSSDUG00000022302) #22	slc4a1a (ENSSDUG00000022306) #23	ubtf (ENSSDUG00000022331) #24	atxn7l3a (ENSSDUG00000022355) #25	tmub2 (ENSSDUG00000022375) #26	asb16 (ENSSDUG00000022376) #27	ENSSDUG00000022381 #28	ENSSDUG00000022393 ##30	asic2 (ENSSDUG00000022395) #30	MPP3 (ENSSDUG00000022409) #31	ENSSDUG00000022432 #32	ZNF281 (ENSSDUG00000022438) #33	ENSSDUG00000022440 #34	tmem98 (ENSSDUG00000022445) #35	ENSSDUG00000022456 #36	ENSSDUG00000022505 #37
Yellowtail amberjack	MODERN SPECIES	1984													ENSSLDG00000005813 #18	NGFR (ENSSLDG00000005798) #19	ENSSLDG00000005786 #20	selenow2b (ENSSLDG00000005764) #22
Barramundi perch	MODERN SPECIES	152	limd2 (ENSLCAG00010005992)	ddx42 (ENSLCAG00010006017)	strada (ENSLCAG00010006108) #7	rnf113a (ENSLCAG00010006145) #8	RUNDC3A (ENSLCAG00010006173) #9	ENSLCAG00010006190 #10	ENSLCAG00010006193 #11	ENSLCAG00010006196	ENSLCAG00010006199 #13	slc35b1 (ENSLCAG00010006204) #15	ndufa4a (ENSLCAG00010006209) #16	spop (ENSLCAG00010006224)	NXPH3 (ENSLCAG00010006245) #18	NGFR (ENSLCAG00010006249) #19	ENSLCAG00010006257 #20	selenow2b (ENSLCAG00010006266) #22	slc4a1a (ENSLCAG00010006298) #23	ubtf (ENSLCAG00010006392) #24	ENSLCAG00010006414	tmub2 (ENSLCAG00010006418) #26	asb16 (ENSLCAG00010006422) #27	ENSLCAG00010006427 #28	ENSLCAG00010006432 ##30	asic2 (ENSLCAG00010006437) #30
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000021883	limd2 (ENSMAMG00000027978)	ddx42 (ENSMAMG00000021888)	strada (ENSMAMG00000021891) #7	rnf113a (ENSMAMG00000021895) #8	ENSMAMG00000021900 #9	ENSMAMG00000021902 #10	ENSMAMG00000021903	FAM117A (ENSMAMG00000021905) #13	ndufa4a (ENSMAMG00000027103) #16	spop (ENSMAMG00000024435)	NXPH3 (ENSMAMG00000025415) #18	NGFR (ENSMAMG00000021967) #19	ENSMAMG00000021969 ##20	ENSMAMG00000028409 #20	selenow2b (ENSMAMG00000021973) #22	slc4a1a (ENSMAMG00000021975) #23	ubtf (ENSMAMG00000021978) #24	atxn7l3a (ENSMAMG00000021987) #25	tmub2 (ENSMAMG00000022000) #26	asb16 (ENSMAMG00000022002) #27	ENSMAMG00000022005 #28	ENSMAMG00000022009	ENSMAMG00000022010 ##30	asic2 (ENSMAMG00000022013) #30	ENSMAMG00000022016 #31	ENSMAMG00000022020 #32	ENSMAMG00000022024 #33	ENSMAMG00000022032 #34	tmem98 (ENSMAMG00000022034) #35	ENSMAMG00000026658 #36
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000165921	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37	ENSGT00390000017613
Climbing perch	MODERN SPECIES	21	limd2 (ENSATEG00000027118)	ddx42 (ENSATEG00000022920)	strada (ENSATEG00000029681) #7	rnf113a (ENSATEG00000022950) #8	ENSATEG00000022967 #9	ENSATEG00000022989 #10	ENSATEG00000022992 #11	ENSATEG00000022994	FAM117A (ENSATEG00000022997) #13	slc35b1 (ENSATEG00000023006) #15	ndufa4a (ENSATEG00000025791) #16	spop (ENSATEG00000026627)	NXPH3 (ENSATEG00000029156) #18	NGFR (ENSATEG00000023041) #19	ENSATEG00000029254 #20	selenow2b (ENSATEG00000023056) #22	slc4a1a (ENSATEG00000023071) #23	ubtf (ENSATEG00000023156) #24	ATXN7L3 (ENSATEG00000027229)	tmub2 (ENSATEG00000023276) #26	asb16 (ENSATEG00000023280) #27	ENSATEG00000023285 #28	asic2 (ENSATEG00000023292) #30	ENSATEG00000023295 #31	ENSATEG00000023305	ENSATEG00000023310 #33	ENSATEG00000023318 #34	tmem98 (ENSATEG00000023323) #35	ENSATEG00000023333 #36	ENSATEG00000023370 #37	retsat.2 (ENSATEG00000023412)
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	19	ccdc47 (ENSBSLG00000003952)	DCAF7 (ENSBSLG00000003896)	kcnh6a (ENSBSLG00000003761)	limd2 (ENSBSLG00000002990)	ddx42 (ENSBSLG00000002910)	strada (ENSBSLG00000002552) #7	rnf113a (ENSBSLG00000002381) #8	ENSBSLG00000002343 #10	ENSBSLG00000002328 #11	ENSBSLG00000002317	RUNDC3A (ENSBSLG00000002252) #9	ENSBSLG00000002163 #13	slc35b1 (ENSBSLG00000001723) #15	ndufa4a (ENSBSLG00000001686) #16	ENSBSLG00000019771 #18	selenow2b (ENSBSLG00000019649) #22	slc4a1a (ENSBSLG00000019645) #23	ENSBSLG00000019639 #23	NGFR (ENSBSLG00000019634) #19	NGFR (ENSBSLG00000019630) #19	ENSBSLG00000019621 #20	selenow2b (ENSBSLG00000019617) #22	slc4a1a (ENSBSLG00000018726) #23	ubtf (ENSBSLG00000017490) #24	atxn7l3a (ENSBSLG00000017326) #25	tmub2 (ENSBSLG00000017318) #26	asb16 (ENSBSLG00000017302) #27	ENSBSLG00000017248 #28	asic2 (ENSBSLG00000016744) #30	MPP3 (ENSBSLG00000016378) #31	ENSBSLG00000016357 #32
Siamese fighting fish	MODERN SPECIES	19	rnf113a (ENSBSLG00000002381) #8	ENSBSLG00000002343 #10	ENSBSLG00000002328 #11	ENSBSLG00000002317	RUNDC3A (ENSBSLG00000002252) #9	ENSBSLG00000002163 #13	slc35b1 (ENSBSLG00000001723) #15	ndufa4a (ENSBSLG00000001686) #16	ENSBSLG00000019771 #18	selenow2b (ENSBSLG00000019649) #22	slc4a1a (ENSBSLG00000019645) #23	ENSBSLG00000019639 #23	NGFR (ENSBSLG00000019634) #19	NGFR (ENSBSLG00000019630) #19	ENSBSLG00000019621 #20	selenow2b (ENSBSLG00000019617) #22	slc4a1a (ENSBSLG00000018726) #23	ubtf (ENSBSLG00000017490) #24	atxn7l3a (ENSBSLG00000017326) #25	tmub2 (ENSBSLG00000017318) #26	asb16 (ENSBSLG00000017302) #27	ENSBSLG00000017248 #28	asic2 (ENSBSLG00000016744) #30	MPP3 (ENSBSLG00000016378) #31	ENSBSLG00000016357 #32	ZNF281 (ENSBSLG00000016355) #33	ENSBSLG00000016353 #34	tmem98 (ENSBSLG00000016351) #35	ENSBSLG00000016331 #36	ENSBSLG00000016322 #37	retsat.2 (ENSBSLG00000016297)
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Eupecaria_C	ANCESTRAL SPECIES	25	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	23	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00710000106813.B.a #32	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Large yellow croaker	MODERN SPECIES	483	limd2 (ENSLCRG00005003687)	ddx42 (ENSLCRG00005003693)	strada (ENSLCRG00005003724) #7	rnf113a (ENSLCRG00005003735) #8	RUNDC3A (ENSLCRG00005003918) #9	ENSLCRG00005004082 #10	ENSLCRG00005004083	FAM117A (ENSLCRG00005004085) #13	slc35b1 (ENSLCRG00005004094) #15	ndufa4a (ENSLCRG00005004097) #16	spop (ENSLCRG00005004099)	NXPH3 (ENSLCRG00005004113) #18	NGFR (ENSLCRG00005004114) #19	ENSLCRG00005004115 ##20	ENSLCRG00005004116 #20	selenow2b (ENSLCRG00005004118) #22	slc4a1a (ENSLCRG00005004134) #23	ubtf (ENSLCRG00005007204) #24	ENSLCRG00005007268	ENSLCRG00005007269	tmub2 (ENSLCRG00005007274) #26	asb16 (ENSLCRG00005007277) #27	ENSLCRG00005007280 #28	ENSLCRG00005007285 ##30	asic2 (ENSLCRG00005007289) #30	MPP3 (ENSLCRG00005007308) #31	ENSLCRG00005007431	ENSLCRG00005007434	ZNF281 (ENSLCRG00005007435) #33	ENSLCRG00005007438 #34	tmem98 (ENSLCRG00005007442) #35
European seabass	MODERN SPECIES	21	limd2 (ENSDLAG00005011484)	ddx42 (ENSDLAG00005011499)	strada (ENSDLAG00005011571) #7	rnf113a (ENSDLAG00005011707) #8	ENSDLAG00005011743 #9	ENSDLAG00005011932 #10	ENSDLAG00005011934 #11	ENSDLAG00005011941	FAM117A (ENSDLAG00005011944) #13	slc35b1 (ENSDLAG00005011977) #15	ENSDLAG00005027804	spop (ENSDLAG00005012058)	NXPH3 (ENSDLAG00005012060) #18	NGFR (ENSDLAG00005012065) #19	ENSDLAG00005012077 #20	selenow2b (ENSDLAG00005012081) #22	slc4a1a (ENSDLAG00005012126) #23	ubtf (ENSDLAG00005015760) #24	ENSDLAG00005016287	tmub2 (ENSDLAG00005016342) #26	asb16 (ENSDLAG00005016348) #27	ENSDLAG00005016358 #28	ENSDLAG00005016366 ##30	asic2 (ENSDLAG00005016394) #30	ENSDLAG00005017055 #31	ENSDLAG00005030722 #32	ENSDLAG00005029714 #33	ENSDLAG00005017703 #34	tmem98 (ENSDLAG00005034210) #35	ENSDLAG00005017744 #36	retsat.2 (ENSDLAG00005018043)
Gilthead seabream	MODERN SPECIES	15	kcnh6a (ENSSAUG00010024541)	gfap (ENSSAUG00010024635)	MAP3K3 (ENSSAUG00010024637)	limd2 (ENSSAUG00010024673)	ddx42 (ENSSAUG00010024680)	strada (ENSSAUG00010024692) #7	rnf113a (ENSSAUG00010024843) #8	RUNDC3A (ENSSAUG00010024854) #9	FAM117A (ENSSAUG00010024859) #13	slc35b1 (ENSSAUG00010024861) #15	NDUFA4 (ENSSAUG00010024913) #16	spop (ENSSAUG00010024916)	NXPH3 (ENSSAUG00010024922) #18	ENSSAUG00010024923 #19	ENSSAUG00010024925 #20	selenow2b (ENSSAUG00010024926) #22	slc4a1a (ENSSAUG00010024983) #23	ubtf (ENSSAUG00010026035) #24	ENSSAUG00010026044	tmub2 (ENSSAUG00010011994) #26	asb16 (ENSSAUG00010011996) #27	ENSSAUG00010011999 #28	asic2 (ENSSAUG00010012013) #30	MPP3 (ENSSAUG00010012740) #31	ENSSAUG00010013575 #32	ZNF281 (ENSSAUG00010013577) #33	ENSSAUG00010013578 #34	tmem98 (ENSSAUG00010013579) #35	ENSSAUG00010013580 #36	ENSSAUG00010013585 #37	retsat.2 (ENSSAUG00010013588)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT01100000263610 #10	ENSGT00940000177150 #11	ENSGT01100000263643	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a.d	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT01010000228294	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT01050000245493	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00940000154376.a.a.d	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT01010000228294	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000158253 #25	ENSGT00390000014069.b #26	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37	ENSGT00390000017613
Pike perch	MODERN SPECIES	35	limd2 (ENSSLUG00000020066)	ddx42 (ENSSLUG00000020081)	strada (ENSSLUG00000020115) #7	rnf113a (ENSSLUG00000020241) #8	RUNDC3A (ENSSLUG00000020264) #9	ENSSLUG00000020302 #10	ENSSLUG00000020304	FAM117A (ENSSLUG00000005353) #13	slc35b1 (ENSSLUG00000005412) #15	ndufa4a (ENSSLUG00000005761) #16	spop (ENSSLUG00000005769)	NXPH3 (ENSSLUG00000005780) #18	NGFR (ENSSLUG00000005786) #19	ENSSLUG00000005801	ENSSLUG00000005814 #20	selenow2b (ENSSLUG00000005817) #22	slc4a1a (ENSSLUG00000005887) #23	ubtf (ENSSLUG00000006660) #24	atxn7l3a (ENSSLUG00000008615) #25	tmub2 (ENSSLUG00000008624) #26	asb16 (ENSSLUG00000008631) #27	ENSSLUG00000008643 #28	asic2 (ENSSLUG00000008655) #30	MPP3 (ENSSLUG00000008728) #31	ZNF281 (ENSSLUG00000009419) #33	ENSSLUG00000009423 #34	tmem98 (ENSSLUG00000009429) #35	ENSSLUG00000009435 #36	ENSSLUG00000009447 #36	ENSSLUG00000009475 #37	retsat.2 (ENSSLUG00000009485)
Tetraodontidae	ANCESTRAL SPECIES	8	ENSGT00940000165921	ENSGT00940000159539	ENSGT00940000158767	ENSGT00940000158377.a	ENSGT00940000156559	ENSGT00940000158827 #7	ENSGT00390000016292 #8	ENSGT00940000158922.d #9	ENSGT00950000183046.a.b.l #13	ENSGT00940000157900 #15	ENSGT00940000154268.k.a #16	ENSGT00950000182883.a.a.a #18	ENSGT00730000110974.a #19	ENSGT00940000162556.D.a.b ##20	ENSGT00940000162556.G.d #20	ENSGT00390000010440.h #22	ENSGT00940000157423.a.a #23	ENSGT00940000166349 #24	ENSGT00940000167574	ENSGT00940000160773 #27	ENSGT00400000022305 #28	ENSGT00940000154991.a.b ##30	ENSGT00940000154991.a.a #30	ENSGT00940000157190.c #31	ENSGT00940000161586.c #33	ENSGT01080000257365.b.a.a.b.b.f #34	ENSGT00390000012062 #35	ENSGT00940000166828 #36	ENSGT00940000166962 #37	ENSGT00390000017613	ENSGT00390000017837.a.v
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	TAAR1 (ENSTNIG00000000404)	ENSTNIG00000004194	nr1h5 (ENSTNIG00000004195)	slc66a1 (ENSTNIG00000004196)	trim33 (ENSTNIG00000004197)	ENSTNIG00000004198	ENSTNIG00000004199	ENSTNIG00000000820	ssr1 (ENSTNIG00000003328)	ezh2 (ENSTNIG00000002191)	ttl (ENSTNIG00000004207)	ENSTNIG00000001509	ENSTNIG00000000669	nhp2 (ENSTNIG00000004219)	ENSTNIG00000004220 #20	MIEN1 (ENSTNIG00000004221) #22	slc4a1a (ENSTNIG00000004273) #23	ENSTNIG00000004229	ENSTNIG00000004230	GABRR2 (ENSTNIG00000004231)	ENSTNIG00000004232	eif3eb (ENSTNIG00000004238)	ENSTNIG00000004239	ENSTNIG00000004240	ENSTNIG00000004241	stx3a (ENSTNIG00000004243)	pknox1.1 (ENSTNIG00000004244)	ENSTNIG00000004245	ENSTNIG00000001053	wdr4 (ENSTNIG00000004246)	noto (ENSTNIG00000004247)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000849	ENSTNIG00000000829	mtap (ENSTNIG00000004333)	brd4 (ENSTNIG00000004330)	LPAR2 (ENSTNIG00000004329)	pfn2a (ENSTNIG00000004310)	rnf13 (ENSTNIG00000004309)	bpnt2 (ENSTNIG00000001741)	ENSTNIG00000004308	fam107b (ENSTNIG00000004306)	gcsha (ENSTNIG00000004305)	ENSTNIG00000004304	nav3 (ENSTNIG00000004292)	dnaaf1 (ENSTNIG00000004277)	ENSTNIG00000004275 #20	selenow2b (ENSTNIG00000004274) #22	slc4a1a (ENSTNIG00000004222) #23	ENSTNIG00000004272	ubtf (ENSTNIG00000004271) #24	ENSTNIG00000004270	tmub2 (ENSTNIG00000004269) #26	asb16 (ENSTNIG00000004268) #27	ENSTNIG00000004267 #28	ENSTNIG00000004266 ##30	GBF1 (ENSTNIG00000004265)	macroh2a2 (ENSTNIG00000004264)	ist1 (ENSTNIG00000004263)	ENSTNIG00000004262	ENSTNIG00000004261	mcee (ENSTNIG00000000800)	FTH1 (ENSTNIG00000004260)
Fugu	MODERN SPECIES	17	limd2 (ENSTRUG00000022099)	ddx42 (ENSTRUG00000010711)	strada (ENSTRUG00000011020) #7	rnf113a (ENSTRUG00000011142) #8	ENSTRUG00000020260	ENSTRUG00000024206	RUNDC3A (ENSTRUG00000011302) #9	ENSTRUG00000011482 #13	slc35b1 (ENSTRUG00000011550) #15	ndufa4a (ENSTRUG00000001634) #16	ENSTRUG00000028936	NXPH3 (ENSTRUG00000029641) #18	NGFR (ENSTRUG00000026109) #19	ENSTRUG00000031484 ##20	ENSTRUG00000020422 #20	selenow2b (ENSTRUG00000023497) #22	slc4a1a (ENSTRUG00000016704) #23	ubtf (ENSTRUG00000016692) #24	ENSTRUG00000016684	asb16 (ENSTRUG00000016674) #27	ENSTRUG00000024866 #28	asic2 (ENSTRUG00000016649) #30	MPP3 (ENSTRUG00000016624) #31	ENSTRUG00000031279	ENSTRUG00000027431	ZNF281 (ENSTRUG00000029423) #33	ENSTRUG00000016607 #34	tmem98 (ENSTRUG00000016603) #35	ENSTRUG00000029046 #36	ENSTRUG00000031410 #37	nmt1a (ENSTRUG00000016574)