Actinopterygii ANCESTRAL SPECIES 18 ENSGT00530000063301.a.b ENSGT00950000183187.A ENSGT00940000159843 ENSGT00940000169841 ENSGT00990000205468 ENSGT00940000153766.B ENSGT00390000004624.a.b ENSGT00940000160101 ENSGT00940000160700 ENSGT00390000009277 ENSGT00940000157545 ENSGT00510000047812 ENSGT00390000019406 ENSGT00940000157722 ENSGT00940000157091 ENSGT00390000010440 #22 ENSGT00940000177451 ENSGT00940000160441 ENSGT00940000157542 ENSGT00940000157875 ENSGT00940000157938 ENSGT00940000161137 ENSGT00940000164068.a.b.b ENSGT00940000164068.a.b.a.a.a ENSGT00390000011613 ENSGT00940000156422 ENSGT00510000047412.b ENSGT00940000158441 ENSGT00510000046704.b.b ENSGT00940000157324 ENSGT00390000011190 Neopterygii ANCESTRAL SPECIES 815 ENSGT00390000010440 #22 ENSGT00940000177451 Osteoglossocephalai ANCESTRAL SPECIES 251 ENSGT00940000158922.c ENSGT00950000183046.a.b.k ENSGT00940000154268.k.b ENSGT00940000154376.a.b ENSGT00950000182883.a.a.b ENSGT00730000110974.b ENSGT00940000157423.a.b ##23 ENSGT00940000167603 ENSGT00390000010440 #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000165535 ENSGT00940000154991.a.a ##30 Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 60 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01090000260346 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000162556.A.a.b ##21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Acanthomorphata ANCESTRAL SPECIES 2 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Euacanthomorphacea ANCESTRAL SPECIES 5 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01100000263643 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Percomorphaceae ANCESTRAL SPECIES 3 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT01100000263643 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Percomorphaceae_B ANCESTRAL SPECIES 2 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Eupercaria ANCESTRAL SPECIES 3 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Tetraodontidae ANCESTRAL SPECIES 8 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 ENSGT00390000017613 ENSGT00390000017837.a.v Tetraodon DUPLICATION Tetraodon MODERN SPECIES 26 ENSTNIG00000000849 #7 ENSTNIG00000000829 #8 mtap (ENSTNIG00000004333) #9 brd4 (ENSTNIG00000004330) #10 LPAR2 (ENSTNIG00000004329) #11 pfn2a (ENSTNIG00000004310) #12 rnf13 (ENSTNIG00000004309) #13 bpnt2 (ENSTNIG00000001741) #14 ENSTNIG00000004308 #15 fam107b (ENSTNIG00000004306) #16 gcsha (ENSTNIG00000004305) #17 ENSTNIG00000004304 #18 nav3 (ENSTNIG00000004292) #19 dnaaf1 (ENSTNIG00000004277) #20 ENSTNIG00000004275 #21 selenow2b (ENSTNIG00000004274) #22 slc4a1a (ENSTNIG00000004222) #23 ENSTNIG00000004272 #24 ubtf (ENSTNIG00000004271) #25 ENSTNIG00000004270 #26 tmub2 (ENSTNIG00000004269) #27 asb16 (ENSTNIG00000004268) #28 ENSTNIG00000004267 #29 ENSTNIG00000004266 #30 GBF1 (ENSTNIG00000004265) #31 macroh2a2 (ENSTNIG00000004264) #32 ist1 (ENSTNIG00000004263) #33 ENSTNIG00000004262 #34 ENSTNIG00000004261 #35 mcee (ENSTNIG00000000800) #36 FTH1 (ENSTNIG00000004260) #37 Tetraodon MODERN SPECIES 26 TAAR1 (ENSTNIG00000000404) ENSTNIG00000004194 nr1h5 (ENSTNIG00000004195) slc66a1 (ENSTNIG00000004196) trim33 (ENSTNIG00000004197) ENSTNIG00000004198 ENSTNIG00000004199 ENSTNIG00000000820 ssr1 (ENSTNIG00000003328) ezh2 (ENSTNIG00000002191) ttl (ENSTNIG00000004207) ENSTNIG00000001509 ##7 ENSTNIG00000000669 nhp2 (ENSTNIG00000004219) ENSTNIG00000004220 ##21 MIEN1 (ENSTNIG00000004221) ##22 slc4a1a (ENSTNIG00000004273) ##23 ENSTNIG00000004229 ENSTNIG00000004230 GABRR2 (ENSTNIG00000004231) ENSTNIG00000004232 eif3eb (ENSTNIG00000004238) ENSTNIG00000004239 ENSTNIG00000004240 ENSTNIG00000004241 stx3a (ENSTNIG00000004243) pknox1.1 (ENSTNIG00000004244) ENSTNIG00000004245 ENSTNIG00000001053 wdr4 (ENSTNIG00000004246) noto (ENSTNIG00000004247) Fugu MODERN SPECIES 17 limd2 (ENSTRUG00000022099) ddx42 (ENSTRUG00000010711) strada (ENSTRUG00000011020) rnf113a (ENSTRUG00000011142) ENSTRUG00000020260 ENSTRUG00000024206 RUNDC3A (ENSTRUG00000011302) ENSTRUG00000011482 slc35b1 (ENSTRUG00000011550) ndufa4a (ENSTRUG00000001634) ENSTRUG00000028936 NXPH3 (ENSTRUG00000029641) NGFR (ENSTRUG00000026109) ENSTRUG00000031484 ##21 ENSTRUG00000020422 #21 selenow2b (ENSTRUG00000023497) #22 slc4a1a (ENSTRUG00000016704) #23 ubtf (ENSTRUG00000016692) #25 ENSTRUG00000016684 #26 asb16 (ENSTRUG00000016674) #28 ENSTRUG00000024866 #29 asic2 (ENSTRUG00000016649) ##30 MPP3 (ENSTRUG00000016624) ENSTRUG00000031279 ENSTRUG00000027431 ZNF281 (ENSTRUG00000029423) ENSTRUG00000016607 tmem98 (ENSTRUG00000016603) ENSTRUG00000029046 ENSTRUG00000031410 nmt1a (ENSTRUG00000016574) Eupecaria_A ANCESTRAL SPECIES 5 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Eupecaria_B ANCESTRAL SPECIES ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Eupecaria_C ANCESTRAL SPECIES 25 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Eupercaria_incertae_sedis ANCESTRAL SPECIES 23 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Large yellow croaker MODERN SPECIES 483 limd2 (ENSLCRG00005003687) ddx42 (ENSLCRG00005003693) strada (ENSLCRG00005003724) rnf113a (ENSLCRG00005003735) RUNDC3A (ENSLCRG00005003918) ENSLCRG00005004082 ENSLCRG00005004083 FAM117A (ENSLCRG00005004085) slc35b1 (ENSLCRG00005004094) ndufa4a (ENSLCRG00005004097) spop (ENSLCRG00005004099) NXPH3 (ENSLCRG00005004113) NGFR (ENSLCRG00005004114) ENSLCRG00005004115 ##21 ENSLCRG00005004116 #21 selenow2b (ENSLCRG00005004118) #22 slc4a1a (ENSLCRG00005004134) #23 ubtf (ENSLCRG00005007204) #25 ENSLCRG00005007268 #26 ENSLCRG00005007269 #26 tmub2 (ENSLCRG00005007274) #27 asb16 (ENSLCRG00005007277) #28 ENSLCRG00005007280 #29 ENSLCRG00005007285 #30 asic2 (ENSLCRG00005007289) ##30 MPP3 (ENSLCRG00005007308) ENSLCRG00005007431 ENSLCRG00005007434 ZNF281 (ENSLCRG00005007435) ENSLCRG00005007438 tmem98 (ENSLCRG00005007442) European seabass MODERN SPECIES 21 limd2 (ENSDLAG00005011484) ddx42 (ENSDLAG00005011499) strada (ENSDLAG00005011571) rnf113a (ENSDLAG00005011707) ENSDLAG00005011743 ENSDLAG00005011932 ENSDLAG00005011934 ENSDLAG00005011941 FAM117A (ENSDLAG00005011944) slc35b1 (ENSDLAG00005011977) ENSDLAG00005027804 spop (ENSDLAG00005012058) NXPH3 (ENSDLAG00005012060) NGFR (ENSDLAG00005012065) ENSDLAG00005012077 #21 selenow2b (ENSDLAG00005012081) #22 slc4a1a (ENSDLAG00005012126) #23 ubtf (ENSDLAG00005015760) #25 ENSDLAG00005016287 #26 tmub2 (ENSDLAG00005016342) #27 asb16 (ENSDLAG00005016348) #28 ENSDLAG00005016358 #29 ENSDLAG00005016366 #30 asic2 (ENSDLAG00005016394) ##30 ENSDLAG00005017055 ENSDLAG00005030722 ENSDLAG00005029714 ENSDLAG00005017703 tmem98 (ENSDLAG00005034210) ENSDLAG00005017744 retsat.2 (ENSDLAG00005018043) Gilthead seabream MODERN SPECIES 15 kcnh6a (ENSSAUG00010024541) gfap (ENSSAUG00010024635) MAP3K3 (ENSSAUG00010024637) limd2 (ENSSAUG00010024673) ddx42 (ENSSAUG00010024680) strada (ENSSAUG00010024692) rnf113a (ENSSAUG00010024843) RUNDC3A (ENSSAUG00010024854) FAM117A (ENSSAUG00010024859) slc35b1 (ENSSAUG00010024861) NDUFA4 (ENSSAUG00010024913) spop (ENSSAUG00010024916) NXPH3 (ENSSAUG00010024922) ENSSAUG00010024923 ENSSAUG00010024925 #21 selenow2b (ENSSAUG00010024926) #22 slc4a1a (ENSSAUG00010024983) #23 ubtf (ENSSAUG00010026035) #25 ENSSAUG00010026044 #26 tmub2 (ENSSAUG00010011994) #27 asb16 (ENSSAUG00010011996) #28 ENSSAUG00010011999 #29 asic2 (ENSSAUG00010012013) ##30 MPP3 (ENSSAUG00010012740) ENSSAUG00010013575 ZNF281 (ENSSAUG00010013577) ENSSAUG00010013578 tmem98 (ENSSAUG00010013579) ENSSAUG00010013580 ENSSAUG00010013585 retsat.2 (ENSSAUG00010013588) Perciformes ANCESTRAL SPECIES 1 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a.d ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT01010000228294 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT01050000245493 ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Perciformes_a ANCESTRAL SPECIES 1 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a.d ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT01010000228294 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 ENSGT00390000017613 Pike perch MODERN SPECIES 35 limd2 (ENSSLUG00000020066) ddx42 (ENSSLUG00000020081) strada (ENSSLUG00000020115) rnf113a (ENSSLUG00000020241) RUNDC3A (ENSSLUG00000020264) ENSSLUG00000020302 ENSSLUG00000020304 FAM117A (ENSSLUG00000005353) slc35b1 (ENSSLUG00000005412) ndufa4a (ENSSLUG00000005761) spop (ENSSLUG00000005769) NXPH3 (ENSSLUG00000005780) NGFR (ENSSLUG00000005786) ENSSLUG00000005801 ENSSLUG00000005814 #21 selenow2b (ENSSLUG00000005817) #22 slc4a1a (ENSSLUG00000005887) #23 ubtf (ENSSLUG00000006660) #25 atxn7l3a (ENSSLUG00000008615) tmub2 (ENSSLUG00000008624) #27 asb16 (ENSSLUG00000008631) #28 ENSSLUG00000008643 #29 asic2 (ENSSLUG00000008655) ##30 MPP3 (ENSSLUG00000008728) ZNF281 (ENSSLUG00000009419) ENSSLUG00000009423 tmem98 (ENSSLUG00000009429) ENSSLUG00000009435 ENSSLUG00000009447 ENSSLUG00000009475 retsat.2 (ENSSLUG00000009485) Percomorphaceae_D ANCESTRAL SPECIES 1 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Carangaria ANCESTRAL SPECIES 4 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT01010000228294 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Pleuronectoidei ANCESTRAL SPECIES 2 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 ENSGT00390000017613 ENSGT00390000017837.a.v Turbot MODERN SPECIES 10 ENSSMAG00000012689 RBFOX3 (ENSSMAG00000012618) ENSSMAG00000012597 ENSSMAG00000012518 ENSSMAG00000012442 ENSSMAG00000012449 ENSSMAG00000023265 FAM117A (ENSSMAG00000012429) slc35b1 (ENSSMAG00000012406) ndufa4a (ENSSMAG00000018128) spop (ENSSMAG00000012241) ENSSMAG00000025110 NXPH3 (ENSSMAG00000012235) NGFR (ENSSMAG00000012202) ENSSMAG00000012187 #21 selenow2b (ENSSMAG00000012167) #22 slc4a1a (ENSSMAG00000012131) #23 ubtf (ENSSMAG00000012016) #25 ENSSMAG00000011961 #26 tmub2 (ENSSMAG00000012009) #27 asb16 (ENSSMAG00000011943) #28 ENSSMAG00000011904 #29 asic2 (ENSSMAG00000011371) ##30 ENSSMAG00000011253 ENSSMAG00000022986 ENSSMAG00000011156 tmem98 (ENSSMAG00000035913) ENSSMAG00000010977 ENSSMAG00000010962 retsat.2 (ENSSMAG00000010932) nmt1a (ENSSMAG00000010916) Tongue sole MODERN SPECIES 8 MAP3K3 (ENSCSEG00000021599) limd2 (ENSCSEG00000021581) ddx42 (ENSCSEG00000021574) strada (ENSCSEG00000021572) rnf113a (ENSCSEG00000021570) ENSCSEG00000021569 ENSCSEG00000021568 ENSCSEG00000021567 RUNDC3A (ENSCSEG00000021566) ENSCSEG00000021564 slc35b1 (ENSCSEG00000021562) ndufa4a (ENSCSEG00000021561) ENSCSEG00000021559 NGFR (ENSCSEG00000021522) ENSCSEG00000021519 #21 selenow2b (ENSCSEG00000021516) #22 slc4a1a (ENSCSEG00000021512) #23 ubtf (ENSCSEG00000021498) #25 ENSCSEG00000021494 #26 tmub2 (ENSCSEG00000021492) #27 asb16 (ENSCSEG00000021489) #28 ENSCSEG00000021486 #29 ENSCSEG00000021483 olfm2a (ENSCSEG00000021480) ZNF385C (ENSCSEG00000021383) dhx58 (ENSCSEG00000021382) mlx (ENSCSEG00000021380) FMNL1 (ENSCSEG00000021373) SRCIN1 (ENSCSEG00000021366) ENSCSEG00000021280 wnt9b (ENSCSEG00000021279) Carangaria_A ANCESTRAL SPECIES 28 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT01010000228294 ENSGT00940000162556.G.d #21 ENSGT00940000162556.A.a.b.a ##21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b.g #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Seriola ANCESTRAL SPECIES 15 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT01010000228294 ENSGT00940000162556.G.d #21 ENSGT00940000162556.A.a.b.a ##21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b.g #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Greater amberjack MODERN SPECIES 17 strada (ENSSDUG00000022236) rnf113a (ENSSDUG00000022244) RUNDC3A (ENSSDUG00000022256) ENSSDUG00000022261 ENSSDUG00000022264 ENSSDUG00000022266 FAM117A (ENSSDUG00000022268) slc35b1 (ENSSDUG00000022272) ndufa4a (ENSSDUG00000022275) spop (ENSSDUG00000022277) NXPH3 (ENSSDUG00000022289) NGFR (ENSSDUG00000022292) ENSSDUG00000022294 ENSSDUG00000022296 #21 ENSSDUG00000022299 ##21 selenow2b (ENSSDUG00000022302) #22 slc4a1a (ENSSDUG00000022306) #23 ubtf (ENSSDUG00000022331) #25 atxn7l3a (ENSSDUG00000022355) tmub2 (ENSSDUG00000022375) #27 asb16 (ENSSDUG00000022376) #28 ENSSDUG00000022381 #29 ENSSDUG00000022393 #30 asic2 (ENSSDUG00000022395) ##30 MPP3 (ENSSDUG00000022409) ENSSDUG00000022432 ZNF281 (ENSSDUG00000022438) ENSSDUG00000022440 tmem98 (ENSSDUG00000022445) ENSSDUG00000022456 ENSSDUG00000022505 Yellowtail amberjack MODERN SPECIES 1984 ENSSLDG00000005813 NGFR (ENSSLDG00000005798) ENSSLDG00000005786 #21 selenow2b (ENSSLDG00000005764) #22 Barramundi perch MODERN SPECIES 152 limd2 (ENSLCAG00010005992) ddx42 (ENSLCAG00010006017) strada (ENSLCAG00010006108) rnf113a (ENSLCAG00010006145) RUNDC3A (ENSLCAG00010006173) ENSLCAG00010006190 ENSLCAG00010006193 ENSLCAG00010006196 ENSLCAG00010006199 slc35b1 (ENSLCAG00010006204) ndufa4a (ENSLCAG00010006209) spop (ENSLCAG00010006224) NXPH3 (ENSLCAG00010006245) NGFR (ENSLCAG00010006249) ENSLCAG00010006257 #21 selenow2b (ENSLCAG00010006266) #22 slc4a1a (ENSLCAG00010006298) #23 ubtf (ENSLCAG00010006392) #25 ENSLCAG00010006414 #26 tmub2 (ENSLCAG00010006418) #27 asb16 (ENSLCAG00010006422) #28 ENSLCAG00010006427 #29 ENSLCAG00010006432 #30 asic2 (ENSLCAG00010006437) ##30 Anabantaria ANCESTRAL SPECIES 6 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.D.a.b ##21 ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Zig-zag eel MODERN SPECIES 22 ENSMAMG00000021883 limd2 (ENSMAMG00000027978) ddx42 (ENSMAMG00000021888) strada (ENSMAMG00000021891) rnf113a (ENSMAMG00000021895) ENSMAMG00000021900 ENSMAMG00000021902 ENSMAMG00000021903 FAM117A (ENSMAMG00000021905) ndufa4a (ENSMAMG00000027103) spop (ENSMAMG00000024435) NXPH3 (ENSMAMG00000025415) NGFR (ENSMAMG00000021967) ENSMAMG00000021969 ##21 ENSMAMG00000028409 #21 selenow2b (ENSMAMG00000021973) #22 slc4a1a (ENSMAMG00000021975) #23 ubtf (ENSMAMG00000021978) #25 atxn7l3a (ENSMAMG00000021987) tmub2 (ENSMAMG00000022000) #27 asb16 (ENSMAMG00000022002) #28 ENSMAMG00000022005 #29 ENSMAMG00000022009 ENSMAMG00000022010 #30 asic2 (ENSMAMG00000022013) ##30 ENSMAMG00000022016 ENSMAMG00000022020 ENSMAMG00000022024 ENSMAMG00000022032 tmem98 (ENSMAMG00000022034) ENSMAMG00000026658 Anabantoidei ANCESTRAL SPECIES 7 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 ENSGT00390000017613 Climbing perch MODERN SPECIES 21 limd2 (ENSATEG00000027118) ddx42 (ENSATEG00000022920) strada (ENSATEG00000029681) rnf113a (ENSATEG00000022950) ENSATEG00000022967 ENSATEG00000022989 ENSATEG00000022992 ENSATEG00000022994 FAM117A (ENSATEG00000022997) slc35b1 (ENSATEG00000023006) ndufa4a (ENSATEG00000025791) spop (ENSATEG00000026627) NXPH3 (ENSATEG00000029156) NGFR (ENSATEG00000023041) ENSATEG00000029254 #21 selenow2b (ENSATEG00000023056) #22 slc4a1a (ENSATEG00000023071) #23 ubtf (ENSATEG00000023156) #25 ATXN7L3 (ENSATEG00000027229) #26 tmub2 (ENSATEG00000023276) #27 asb16 (ENSATEG00000023280) #28 ENSATEG00000023285 #29 asic2 (ENSATEG00000023292) ##30 ENSATEG00000023295 ENSATEG00000023305 ENSATEG00000023310 ENSATEG00000023318 tmem98 (ENSATEG00000023323) ENSATEG00000023333 ENSATEG00000023370 retsat.2 (ENSATEG00000023412) Siamese fighting fish DUPLICATION Siamese fighting fish MODERN SPECIES 19 ccdc47 (ENSBSLG00000003952) DCAF7 (ENSBSLG00000003896) kcnh6a (ENSBSLG00000003761) limd2 (ENSBSLG00000002990) ddx42 (ENSBSLG00000002910) strada (ENSBSLG00000002552) rnf113a (ENSBSLG00000002381) ENSBSLG00000002343 ENSBSLG00000002328 ENSBSLG00000002317 RUNDC3A (ENSBSLG00000002252) ENSBSLG00000002163 slc35b1 (ENSBSLG00000001723) ndufa4a (ENSBSLG00000001686) ENSBSLG00000019771 selenow2b (ENSBSLG00000019649) #22 slc4a1a (ENSBSLG00000019645) #23 ENSBSLG00000019639 #23 NGFR (ENSBSLG00000019634) NGFR (ENSBSLG00000019630) ENSBSLG00000019621 #21 selenow2b (ENSBSLG00000019617) #22 slc4a1a (ENSBSLG00000018726) #23 ubtf (ENSBSLG00000017490) #25 atxn7l3a (ENSBSLG00000017326) tmub2 (ENSBSLG00000017318) #27 asb16 (ENSBSLG00000017302) #28 ENSBSLG00000017248 #29 asic2 (ENSBSLG00000016744) ##30 MPP3 (ENSBSLG00000016378) ENSBSLG00000016357 Siamese fighting fish MODERN SPECIES 19 rnf113a (ENSBSLG00000002381) ENSBSLG00000002343 ENSBSLG00000002328 ENSBSLG00000002317 RUNDC3A (ENSBSLG00000002252) ENSBSLG00000002163 slc35b1 (ENSBSLG00000001723) ndufa4a (ENSBSLG00000001686) ENSBSLG00000019771 selenow2b (ENSBSLG00000019649) #22 slc4a1a (ENSBSLG00000019645) #23 ENSBSLG00000019639 #23 NGFR (ENSBSLG00000019634) NGFR (ENSBSLG00000019630) ENSBSLG00000019621 #21 selenow2b (ENSBSLG00000019617) #22 slc4a1a (ENSBSLG00000018726) #23 ubtf (ENSBSLG00000017490) #25 atxn7l3a (ENSBSLG00000017326) tmub2 (ENSBSLG00000017318) #27 asb16 (ENSBSLG00000017302) #28 ENSBSLG00000017248 #29 asic2 (ENSBSLG00000016744) ##30 MPP3 (ENSBSLG00000016378) ENSBSLG00000016357 ZNF281 (ENSBSLG00000016355) ENSBSLG00000016353 tmem98 (ENSBSLG00000016351) ENSBSLG00000016331 ENSBSLG00000016322 retsat.2 (ENSBSLG00000016297) Ovalentaria ANCESTRAL SPECIES 1 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Atherinomorphae ANCESTRAL SPECIES 6 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000162556.A.a.b ##21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Oryzias ANCESTRAL SPECIES ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000162556.A.a.b ##21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Oryzias_b ANCESTRAL SPECIES 11 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01100000264505 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000165535 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Indian medaka MODERN SPECIES 9 gfap (ENSOMEG00000019912) MAP3K3 (ENSOMEG00000020000) limd2 (ENSOMEG00000020039) ddx42 (ENSOMEG00000020093) strada (ENSOMEG00000020155) rnf113a (ENSOMEG00000020197) ENSOMEG00000020212 ENSOMEG00000020221 RUNDC3A (ENSOMEG00000020257) ENSOMEG00000020276 slc35b1 (ENSOMEG00000020317) ndufa4a (ENSOMEG00000020343) NXPH3 (ENSOMEG00000020355) ENSOMEG00000020420 ENSOMEG00000020433 #21 selenow2b (ENSOMEG00000020458) #22 slc4a1a (ENSOMEG00000020519) #23 ubtf (ENSOMEG00000020580) #25 tmub2 (ENSOMEG00000020595) #27 ENSOMEG00000020693 #26 asb16 (ENSOMEG00000020735) #28 ENSOMEG00000020806 #29 ENSOMEG00000020825 asic2 (ENSOMEG00000020866) ##30 MPP3 (ENSOMEG00000020973) ENSOMEG00000021099 ENSOMEG00000000555 ENSOMEG00000021172 tmem98 (ENSOMEG00000021183) ENSOMEG00000021196 ENSOMEG00000021242 Javanese ricefish MODERN SPECIES 22 gfap (ENSOJAG00000014458) MAP3K3 (ENSOJAG00000014122) limd2 (ENSOJAG00000014089) ddx42 (ENSOJAG00000013862) strada (ENSOJAG00000013385) rnf113a (ENSOJAG00000013338) ENSOJAG00000013331 ENSOJAG00000013328 RUNDC3A (ENSOJAG00000013280) ENSOJAG00000013271 slc35b1 (ENSOJAG00000013159) ndufa4a (ENSOJAG00000013130) NXPH3 (ENSOJAG00000013124) NGFR (ENSOJAG00000013065) ENSOJAG00000013060 #21 selenow2b (ENSOJAG00000013038) #22 slc4a1a (ENSOJAG00000012115) #23 ubtf (ENSOJAG00000012079) #25 ENSOJAG00000012046 #26 ENSOJAG00000012037 asb16 (ENSOJAG00000012029) #28 ENSOJAG00000012006 #29 ENSOJAG00000012000 ENSOJAG00000011985 asic2 (ENSOJAG00000011839) ##30 MPP3 (ENSOJAG00000011690) ENSOJAG00000011658 ZNF281 (ENSOJAG00000011655) ENSOJAG00000011641 tmem98 (ENSOJAG00000011625) ENSOJAG00000011602 Oryzias_a ANCESTRAL SPECIES 10 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT01100000263610 ENSGT01100000264505 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000162556.A.a.b ##21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Japanese Medaka HdrR MODERN SPECIES 22 gfap (ENSORLG00000002346) MAP3K3 (ENSORLG00000002357) limd2 (ENSORLG00000023454) ddx42 (ENSORLG00000002395) strada (ENSORLG00000002426) rnf113a (ENSORLG00000002442) RUNDC3A (ENSORLG00000002487) ENSORLG00000022546 ENSORLG00000024605 ENSORLG00000002499 slc35b1 (ENSORLG00000002514) ndufa4a (ENSORLG00000002522) NXPH3 (ENSORLG00000027745) ENSORLG00000002533 ENSORLG00000002537 #21 selenow2b (ENSORLG00000022585) #22 slc4a1a (ENSORLG00000002557) #23 ubtf (ENSORLG00000002593) #25 ENSORLG00000002605 #26 tmub2 (ENSORLG00000002612) #27 asb16 (ENSORLG00000002620) #28 ENSORLG00000029612 #29 ENSORLG00000002626 #30 asic2 (ENSORLG00000002768) ##30 MPP3 (ENSORLG00000002793) ENSORLG00000024122 ZNF281 (ENSORLG00000002799) ENSORLG00000029022 tmem98 (ENSORLG00000002812) ENSORLG00000002829 ENSORLG00000023248 Chinese medaka MODERN SPECIES 503 NXPH3 (ENSOSIG00000019097) NGFR (ENSOSIG00000019109) ENSOSIG00000019112 #21 ENSOSIG00000019113 ##21 selenow2b (ENSOSIG00000019115) #22 slc4a1a (ENSOSIG00000019123) #23 ubtf (ENSOSIG00000019158) #25 ENSOSIG00000019251 #26 tmub2 (ENSOSIG00000019254) #27 asb16 (ENSOSIG00000019255) #28 ENSOSIG00000019262 #29 asic2 (ENSOSIG00000019279) ##30 MPP3 (ENSOSIG00000019411) ENSOSIG00000019472 ENSOSIG00000019475 tmem98 (ENSOSIG00000019478) ENSOSIG00000019486 ENSOSIG00000000171 retsat.2 (ENSOSIG00000000177) nmt1a (ENSOSIG00000000226) Cyprinodontiformes ANCESTRAL SPECIES 3 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Cyprinodontoidei ANCESTRAL SPECIES 18 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Poeciliinae ANCESTRAL SPECIES 1 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Poecilia ANCESTRAL SPECIES 8 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Guppy MODERN SPECIES 460 ddx42 (ENSPREG00000009926) strada (ENSPREG00000009916) rnf113a (ENSPREG00000009900) ENSPREG00000009896 ENSPREG00000009889 ENSPREG00000009881 RUNDC3A (ENSPREG00000009836) ENSPREG00000009824 slc35b1 (ENSPREG00000009804) ndufa4a (ENSPREG00000009800) ENSPREG00000009786 ENSPREG00000009778 NGFR (ENSPREG00000009763) ENSPREG00000009756 #21 ENSPREG00000009746 selenow2b (ENSPREG00000009740) #22 slc4a1a (ENSPREG00000009682) #23 ubtf (ENSPREG00000009616) #25 atxn7l3a (ENSPREG00000009586) tmub2 (ENSPREG00000009572) #27 asb16 (ENSPREG00000009560) #28 ENSPREG00000009541 #29 ENSPREG00000009532 #30 ENSPREG00000009467 EZH1 (ENSPREG00000009410) ENSPREG00000009360 PLEKHH3 (ENSPREG00000009324) tubg1 (ENSPREG00000009293) ENSPREG00000009272 mlx (ENSPREG00000009240) FMNL1 (ENSPREG00000009204) NAME_6 ANCESTRAL SPECIES 18 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Sailfin molly MODERN SPECIES 2944 ENSPLAG00000018601 #21 ENSPLAG00000018629 MIEN1 (ENSPLAG00000018638) #22 slc4a1a (ENSPLAG00000018685) #23 Platyfish MODERN SPECIES 7 strada (ENSXMAG00000027127) rnf113a (ENSXMAG00000008169) RUNDC3A (ENSXMAG00000020987) ENSXMAG00000021920 ENSXMAG00000023789 ENSXMAG00000025357 ENSXMAG00000008192 ENSXMAG00000026407 slc35b1 (ENSXMAG00000025030) ndufa4a (ENSXMAG00000022120) ENSXMAG00000026283 NXPH3 (ENSXMAG00000008203) NGFR (ENSXMAG00000008204) ENSXMAG00000008208 #21 ENSXMAG00000026489 selenow2b (ENSXMAG00000025994) #22 slc4a1a (ENSXMAG00000008209) #23 ubtf (ENSXMAG00000008248) #25 atxn7l3a (ENSXMAG00000008271) tmub2 (ENSXMAG00000008276) #27 asb16 (ENSXMAG00000008279) #28 ENSXMAG00000008282 #29 ENSXMAG00000019737 asic2 (ENSXMAG00000008283) ##30 MPP3 (ENSXMAG00000008287) ENSXMAG00000008316 ZNF281 (ENSXMAG00000008317) ENSXMAG00000027401 tmem98 (ENSXMAG00000008324) ENSXMAG00000008332 ENSXMAG00000008337 NAME_4 ANCESTRAL SPECIES 47 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 Sheepshead minnow MODERN SPECIES 506 ENSCVAG00000003046 ENSCVAG00000003050 ENSCVAG00000003054 #21 selenow2b (ENSCVAG00000003068) #22 axin1 (ENSCVAG00000003102) ENSCVAG00000003112 zfand2a (ENSCVAG00000003118) UNCX (ENSCVAG00000003123) micall2a (ENSCVAG00000003138) INTS1 (ENSCVAG00000003222) mafk (ENSCVAG00000003229) tmem184a (ENSCVAG00000003246) psmg3 (ENSCVAG00000003251) ENSCVAG00000000105 Aplocheiloidei ANCESTRAL SPECIES 7 ENSGT00730000110974.a ENSGT00950000182883.a.a.a ENSGT00940000154268.k.a ENSGT00940000157900 ENSGT00950000183046.a.b.l ENSGT00940000158922.d ENSGT01100000263643 ENSGT01100000263610 ENSGT00390000016292 ENSGT00940000158827 ENSGT00940000156559 ENSGT00940000158377.a ENSGT00940000158767 ENSGT00940000159539 ENSGT00940000165921 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT01050000245493 ENSGT00940000154991.a.b #30 ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 Mangrove rivulus MODERN SPECIES 47 NGFR (ENSKMAG00000009613) ENSKMAG00000009635 ndufa4a (ENSKMAG00000009645) slc35b1 (ENSKMAG00000009665) ENSKMAG00000009693 RUNDC3A (ENSKMAG00000009741) ENSKMAG00000009809 ENSKMAG00000009817 rnf113a (ENSKMAG00000009830) strada (ENSKMAG00000009851) ddx42 (ENSKMAG00000009914) limd2 (ENSKMAG00000009984) ENSKMAG00000009996 gfap (ENSKMAG00000010022) kcnh6a (ENSKMAG00000010062) selenow2b (ENSKMAG00000010109) #22 ENSKMAG00000010144 slc4a1a (ENSKMAG00000010157) #23 ubtf (ENSKMAG00000010213) #25 atxn7l3a (ENSKMAG00000010250) tmub2 (ENSKMAG00000010272) #27 asb16 (ENSKMAG00000010286) #28 ENSKMAG00000010309 #29 ENSKMAG00000010331 asic2 (ENSKMAG00000010367) ##30 MPP3 (ENSKMAG00000010453) ENSKMAG00000010668 ENSKMAG00000010686 ENSKMAG00000010705 tmem98 (ENSKMAG00000010741) ENSKMAG00000010789 Turquoise killifish MODERN SPECIES 1614 ENSNFUG00015000858 ENSNFUG00015000861 NDUFA4 (ENSNFUG00015000864) slc35b1 (ENSNFUG00015000882) FAM117A (ENSNFUG00015000930) RUNDC3A (ENSNFUG00015000950) ENSNFUG00015000975 ENSNFUG00015000981 RNF113A (ENSNFUG00015000993) STRADA (ENSNFUG00015001034) ddx42 (ENSNFUG00015001120) limd2 (ENSNFUG00015001158) MAP3K3 (ENSNFUG00015001184) GFAP (ENSNFUG00015001229) kcnh6a (ENSNFUG00015001250) selenow2b (ENSNFUG00015001263) #22 slc4a1a (ENSNFUG00015001398) #23 ubtf (ENSNFUG00015002045) #25 atxn7l3a (ENSNFUG00015002321) tmub2 (ENSNFUG00015002335) #27 ASB16 (ENSNFUG00015002348) #28 ENSNFUG00015002363 #29 ENSNFUG00015002373 ENSNFUG00015002379 #30 ENSNFUG00015002383 ZNF281 (ENSNFUG00015002394) Nfu_g_1_007551 (ENSNFUG00015002399) ENSNFUG00015002404 TMEM98 (ENSNFUG00015002405) ENSNFUG00015002410 ENSNFUG00015002419 Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Pomacentridae ANCESTRAL SPECIES 24 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT01100000263643 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Pomacentridae_A ANCESTRAL SPECIES 15 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT00940000177150 ENSGT01100000263981 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Amphiprion ANCESTRAL SPECIES 9 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT01100000263610 ENSGT01100000263981 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Clown anemonefish MODERN SPECIES 3408 ddx42 (ENSAOCG00000003520) strada (ENSAOCG00000003498) rnf113a (ENSAOCG00000003485) RUNDC3A (ENSAOCG00000003476) ENSAOCG00000003474 ENSAOCG00000003470 FAM117A (ENSAOCG00000002296) slc35b1 (ENSAOCG00000003459) ndufa4a (ENSAOCG00000003450) spop (ENSAOCG00000003449) NXPH3 (ENSAOCG00000003444) ENSAOCG00000003439 NGFR (ENSAOCG00000003435) ENSAOCG00000003427 #21 ENSAOCG00000003425 ##21 selenow2b (ENSAOCG00000003420) #22 slc4a1a (ENSAOCG00000003417) #23 ubtf (ENSAOCG00000003404) #25 atxn7l3a (ENSAOCG00000003384) tmub2 (ENSAOCG00000003373) #27 asb16 (ENSAOCG00000003372) #28 ENSAOCG00000003365 #29 ENSAOCG00000003359 #30 asic2 (ENSAOCG00000003355) ##30 Orange clownfish MODERN SPECIES 5 MAP3K3 (ENSAPEG00000000898) limd2 (ENSAPEG00000000969) ddx42 (ENSAPEG00000000984) strada (ENSAPEG00000001041) rnf113a (ENSAPEG00000001084) RUNDC3A (ENSAPEG00000001102) ENSAPEG00000001279 ENSAPEG00000001288 FAM117A (ENSAPEG00000001298) slc35b1 (ENSAPEG00000001343) ndufa4a (ENSAPEG00000001384) spop (ENSAPEG00000001406) NXPH3 (ENSAPEG00000001445) NGFR (ENSAPEG00000001456) ENSAPEG00000001491 #21 selenow2b (ENSAPEG00000001497) #22 slc4a1a (ENSAPEG00000001508) #23 ubtf (ENSAPEG00000001545) #25 atxn7l3a (ENSAPEG00000001614) tmub2 (ENSAPEG00000001658) #27 asb16 (ENSAPEG00000001675) #28 ENSAPEG00000001708 #29 ENSAPEG00000001787 #30 asic2 (ENSAPEG00000001805) ##30 MPP3 (ENSAPEG00000001839) ENSAPEG00000001915 ZNF281 (ENSAPEG00000001948) ENSAPEG00000002028 tmem98 (ENSAPEG00000002035) ENSAPEG00000002073 ENSAPEG00000002146 Spiny chromis MODERN SPECIES 248 NGFR (ENSAPOG00000019180) ENSAPOG00000019154 #21 selenow2b (ENSAPOG00000019146) #22 slc4a1a (ENSAPOG00000019116) #23 ubtf (ENSAPOG00000019015) #25 ENSAPOG00000018932 #26 tmub2 (ENSAPOG00000018865) #27 asb16 (ENSAPOG00000018859) #28 ENSAPOG00000018810 #29 ENSAPOG00000018800 #30 ENSAPOG00000018788 asic2 (ENSAPOG00000018769) ##30 Bicolor damselfish MODERN SPECIES 561 ENSSPAG00000017616 #21 selenow2b (ENSSPAG00000017621) #22 slc4a1a (ENSSPAG00000017645) #23 ubtf (ENSSPAG00000017777) #25 ENSSPAG00000017999 #26 tmub2 (ENSSPAG00000018091) #27 ENSSPAG00000018104 asb16 (ENSSPAG00000018127) #28 ENSSPAG00000018139 #29 ENSSPAG00000018154 #30 ENSSPAG00000018162 #30 Cichlidae ANCESTRAL SPECIES 16 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000174710 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Midas cichlid MODERN SPECIES 550 ddx42 (ENSACIG00000007376) ENSACIG00000007408 strada (ENSACIG00000007423) rnf113a (ENSACIG00000007458) RUNDC3A (ENSACIG00000007483) ENSACIG00000007506 ENSACIG00000007510 FAM117A (ENSACIG00000007517) slc35b1 (ENSACIG00000007536) ndufa4a (ENSACIG00000007557) spop (ENSACIG00000007656) NXPH3 (ENSACIG00000007686) NGFR (ENSACIG00000007695) ENSACIG00000007725 #21 ENSACIG00000007737 ##21 selenow2b (ENSACIG00000007747) #22 slc4a1a (ENSACIG00000007777) #23 ubtf (ENSACIG00000007826) #25 atxn7l3a (ENSACIG00000007998) tmub2 (ENSACIG00000008030) #27 asb16 (ENSACIG00000008051) #28 ENSACIG00000008083 #29 ENSACIG00000008095 #30 asic2 (ENSACIG00000008109) ##30 MPP3 (ENSACIG00000008139) ENSACIG00000008218 ZNF281 (ENSACIG00000008230) ENSACIG00000008252 tmem98 (ENSACIG00000008272) ENSACIG00000008286 ENSACIG00000008308 Pseudocrenilabrinae ANCESTRAL SPECIES 1 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000174710 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Nile tilapia MODERN SPECIES 16 strada (ENSONIG00000000738) rnf113a (ENSONIG00000042350) ENSONIG00000037829 ENSONIG00000027590 ENSONIG00000037074 RUNDC3A (ENSONIG00000000748) FAM117A (ENSONIG00000000757) slc35b1 (ENSONIG00000000758) NDUFA4 (ENSONIG00000042265) spop (ENSONIG00000000767) NXPH3 (ENSONIG00000034515) NGFR (ENSONIG00000028321) ENSONIG00000027117 ENSONIG00000032741 #21 ENSONIG00000000776 #21 selenow2b (ENSONIG00000039635) #22 slc4a1a (ENSONIG00000000778) #23 ubtf (ENSONIG00000000796) #25 atxn7l3a (ENSONIG00000000812) tmub2 (ENSONIG00000000814) #27 asb16 (ENSONIG00000000816) #28 ENSONIG00000000821 #29 ENSONIG00000030325 #30 ENSONIG00000035362 asic2 (ENSONIG00000000822) ##30 MPP3 (ENSONIG00000000827) ENSONIG00000042435 ZNF281 (ENSONIG00000000839) ENSONIG00000000844 tmem98 (ENSONIG00000031048) ENSONIG00000000847 Pseudocrenilabrinae_A ANCESTRAL SPECIES 12 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000174710 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Haplochromini ANCESTRAL SPECIES 12 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000174710 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 Burton s mouthbrooder MODERN SPECIES 314 ddx42 (ENSHBUG00000008705) strada (ENSHBUG00000008691) rnf113a (ENSHBUG00000008626) RUNDC3A (ENSHBUG00000008611) ENSHBUG00000008602 ENSHBUG00000008593 ENSHBUG00000008586 FAM117A (ENSHBUG00000008573) slc35b1 (ENSHBUG00000008561) ndufa4a (ENSHBUG00000008529) ENSHBUG00000008421 spop (ENSHBUG00000008411) NXPH3 (ENSHBUG00000008374) NGFR (ENSHBUG00000008364) ENSHBUG00000008326 #21 selenow2b (ENSHBUG00000008305) #22 slc4a1a (ENSHBUG00000008288) #23 ubtf (ENSHBUG00000008228) #25 ENSHBUG00000008136 #26 tmub2 (ENSHBUG00000008032) #27 asb16 (ENSHBUG00000008023) #28 ENSHBUG00000008014 #29 ENSHBUG00000008005 #30 asic2 (ENSHBUG00000007991) ##30 MPP3 (ENSHBUG00000007938) ENSHBUG00000007768 ZNF281 (ENSHBUG00000007749) ENSHBUG00000007690 tmem98 (ENSHBUG00000007681) ENSHBUG00000007647 ENSHBUG00000007590 Haplochromini_A ANCESTRAL SPECIES 14 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000174710 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00950000182812.B.a.a.o.a.b ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 P. nyererei MODERN SPECIES 313 ddx42 (ENSPNYG00000013954) ENSPNYG00000013940 strada (ENSPNYG00000013907) rnf113a (ENSPNYG00000013863) ENSPNYG00000013843 ENSPNYG00000013835 ENSPNYG00000013828 RUNDC3A (ENSPNYG00000013759) FAM117A (ENSPNYG00000013696) slc35b1 (ENSPNYG00000013642) ndufa4a (ENSPNYG00000013603) spop (ENSPNYG00000013554) NXPH3 (ENSPNYG00000013519) NGFR (ENSPNYG00000013507) ENSPNYG00000013502 #21 selenow2b (ENSPNYG00000013474) #22 slc4a1a (ENSPNYG00000013439) #23 ubtf (ENSPNYG00000013380) #25 ENSPNYG00000013327 #26 tmub2 (ENSPNYG00000013305) #27 asb16 (ENSPNYG00000013298) #28 ENSPNYG00000013279 #29 ENSPNYG00000013269 #30 ENSPNYG00000013257 asic2 (ENSPNYG00000013229) ##30 MPP3 (ENSPNYG00000013196) ZNF281 (ENSPNYG00000013174) ENSPNYG00000013167 ENSPNYG00000013156 tmem98 (ENSPNYG00000013142) ENSPNYG00000013071 Haplochromini_B ANCESTRAL SPECIES 21 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d #21 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000167574 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00950000182812.B.a.a.o.a.b ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Eastern happy MODERN SPECIES 16 ddx42 (ENSACLG00000025113) strada (ENSACLG00000025184) rnf113a (ENSACLG00000025256) RUNDC3A (ENSACLG00000025385) ENSACLG00000025400 ENSACLG00000025402 ENSACLG00000025403 FAM117A (ENSACLG00000025413) slc35b1 (ENSACLG00000025420) ndufa4a (ENSACLG00000025435) spop (ENSACLG00000025444) NXPH3 (ENSACLG00000025484) NGFR (ENSACLG00000025495) ENSACLG00000025507 #21 ENSACLG00000025511 #21 selenow2b (ENSACLG00000025513) #22 slc4a1a (ENSACLG00000025519) #23 ubtf (ENSACLG00000025572) #25 ENSACLG00000025625 #26 tmub2 (ENSACLG00000025653) #27 asb16 (ENSACLG00000025656) #28 ENSACLG00000025662 #29 ENSACLG00000025668 #30 ENSACLG00000025677 asic2 (ENSACLG00000000027) ##30 MPP3 (ENSACLG00000000062) ENSACLG00000000105 ZNF281 (ENSACLG00000000130) ENSACLG00000000182 ENSACLG00000000189 ENSACLG00000000213 Zebra mbuna MODERN SPECIES 1107 MAP3K3 (ENSMZEG00005023117) limd2 (ENSMZEG00005023112) ddx42 (ENSMZEG00005023103) strada (ENSMZEG00005023094) rnf113a (ENSMZEG00005023086) ENSMZEG00005023082 ENSMZEG00005023079 RUNDC3A (ENSMZEG00005023078) FAM117A (ENSMZEG00005023074) slc35b1 (ENSMZEG00005023070) ndufa4a (ENSMZEG00005023067) spop (ENSMZEG00005023062) NXPH3 (ENSMZEG00005023056) NGFR (ENSMZEG00005023052) ENSMZEG00005023049 #21 selenow2b (ENSMZEG00005023047) #22 slc4a1a (ENSMZEG00005023040) #23 ubtf (ENSMZEG00005023031) #25 ENSMZEG00005023025 #26 tmub2 (ENSMZEG00005023020) #27 asb16 (ENSMZEG00005023018) #28 ENSMZEG00005023016 #29 ENSMZEG00005023014 #30 ENSMZEG00005023010 asic2 (ENSMZEG00005023005) ##30 MPP3 (ENSMZEG00005023002) ENSMZEG00005022999 ZNF281 (ENSMZEG00005022997) ENSMZEG00005022996 tmem98 (ENSMZEG00005022995) ENSMZEG00005022983 Lyretail cichlid MODERN SPECIES 387 limd2 (ENSNBRG00000004508) ddx42 (ENSNBRG00000004466) strada (ENSNBRG00000004338) rnf113a (ENSNBRG00000004314) ENSNBRG00000004305 ENSNBRG00000004298 ENSNBRG00000004295 RUNDC3A (ENSNBRG00000004167) ENSNBRG00000004146 slc35b1 (ENSNBRG00000004123) ndufa4a (ENSNBRG00000004018) spop (ENSNBRG00000003973) NXPH3 (ENSNBRG00000003957) ENSNBRG00000003938 ENSNBRG00000003923 #21 selenow2b (ENSNBRG00000003909) #22 ENSNBRG00000003894 #21 slc4a1a (ENSNBRG00000003876) #23 ubtf (ENSNBRG00000003814) #25 atxn7l3a (ENSNBRG00000003768) tmub2 (ENSNBRG00000003750) #27 asb16 (ENSNBRG00000003724) #28 ENSNBRG00000003660 #29 ENSNBRG00000003635 #30 asic2 (ENSNBRG00000003595) ##30 MPP3 (ENSNBRG00000003561) ENSNBRG00000003529 Tiger tail seahorse DUPLICATION Tiger tail seahorse MODERN SPECIES 81 MAP3K3 (ENSHCOG00000003256) limd2 (ENSHCOG00000003270) ddx42 (ENSHCOG00000003357) strada (ENSHCOG00000003391) rnf113a (ENSHCOG00000003421) ENSHCOG00000003428 ENSHCOG00000003431 RUNDC3A (ENSHCOG00000003443) slc35b1 (ENSHCOG00000003513) ENSHCOG00000003524 slc35b1 (ENSHCOG00000003541) ndufa4a (ENSHCOG00000003552) NXPH3 (ENSHCOG00000003568) ENSHCOG00000003575 ENSHCOG00000003581 #21 selenow2b (ENSHCOG00000003584) #22 ENSHCOG00000003612 slc4a1a (ENSHCOG00000003654) #23 ubtf (ENSHCOG00000003715) #25 ENSHCOG00000003785 #26 tmub2 (ENSHCOG00000003806) #27 asb16 (ENSHCOG00000003849) #28 ENSHCOG00000003875 #29 asic2 (ENSHCOG00000003900) ##30 MPP3 (ENSHCOG00000004051) ENSHCOG00000004079 ENSHCOG00000004100 ENSHCOG00000000110 ENSHCOG00000004120 tmem98 (ENSHCOG00000004128) ENSHCOG00000004162 Tiger tail seahorse MODERN SPECIES 862 selenow2b (ENSHCOG00000019291) #22 Pinecone sodierfish MODERN SPECIES 22 gfap (ENSMMDG00005016480) MAP3K3 (ENSMMDG00005016475) limd2 (ENSMMDG00005016471) ddx42 (ENSMMDG00005016410) strada (ENSMMDG00005016206) rnf113a (ENSMMDG00005016193) ENSMMDG00005016189 ENSMMDG00005016186 RUNDC3A (ENSMMDG00005016184) FAM117A (ENSMMDG00005016179) slc35b1 (ENSMMDG00005016177) ndufa4a (ENSMMDG00005016172) spop (ENSMMDG00005016171) NXPH3 (ENSMMDG00005016169) NGFR (ENSMMDG00005016074) selenow2b (ENSMMDG00005016073) #22 slc4a1a (ENSMMDG00005016070) #23 ubtf (ENSMMDG00005015512) #25 ENSMMDG00005015488 #26 tmub2 (ENSMMDG00005015487) #27 asb16 (ENSMMDG00005015484) #28 ENSMMDG00005015483 #29 ENSMMDG00005015481 #30 ENSMMDG00005015479 asic2 (ENSMMDG00005015478) ##30 MPP3 (ENSMMDG00005015467) ZNF281 (ENSMMDG00005015462) ENSMMDG00005015459 tmem98 (ENSMMDG00005015456) ENSMMDG00005015449 ENSMMDG00005015440 Cod MODERN SPECIES 11 dcaf7 (ENSGMOG00000017164) gfap (ENSGMOG00000004683) ENSGMOG00000004640 limd2 (ENSGMOG00000026647) ddx42 (ENSGMOG00000004595) strada (ENSGMOG00000031870) rnf113a (ENSGMOG00000004541) ENSGMOG00000004523 ENSGMOG00000008257 ENSGMOG00000035374 ENSGMOG00000026122 slc35b1 (ENSGMOG00000004458) ndufa4a (ENSGMOG00000030235) ENSGMOG00000006614 ENSGMOG00000026497 #21 selenow2b (ENSGMOG00000036715) #22 slc4a1a (ENSGMOG00000001567) #23 ubtf (ENSGMOG00000001531) #25 atxn7l3a (ENSGMOG00000001510) tmub2 (ENSGMOG00000035569) #27 asb16 (ENSGMOG00000032035) #28 ENSGMOG00000028699 #29 asic2 (ENSGMOG00000017812) ##30 ENSGMOG00000008887 ENSGMOG00000029197 ENSGMOG00000033655 ENSGMOG00000008844 ENSGMOG00000026968 tmem98 (ENSGMOG00000036666) ENSGMOG00000017934 ENSGMOG00000017917 Otomorpha ANCESTRAL SPECIES 36 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 ENSGT00940000166962 ENSGT00390000017613 Otophysi ANCESTRAL SPECIES 46 ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Cyprinoidei ANCESTRAL SPECIES 65 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000163160.b.d.b Cyprininae ANCESTRAL SPECIES ENSGT00390000010440.h #22 Goldfish MODERN SPECIES 20 cdipt (ENSCARG00000014413) ENSCARG00000014426 nlk1 (ENSCARG00000014437) tlcd3ba (ENSCARG00000014509) RUNDC3A (ENSCARG00000014516) ENSCARG00000014535 ENSCARG00000014537 FAM117A (ENSCARG00000014543) slc35b1 (ENSCARG00000014573) ndufa4a (ENSCARG00000015466) spop (ENSCARG00000015476) NXPH3 (ENSCARG00000015485) ENSCARG00000015486 NGFR (ENSCARG00000015495) selenow2a (ENSCARG00000015514) ##22 selenow2b (ENSCARG00000015527) #22 slc4a1a (ENSCARG00000015560) #23 ubtf (ENSCARG00000015828) #25 atxn7l3a (ENSCARG00000015976) tmub2 (ENSCARG00000016031) #27 asb16 (ENSCARG00000016042) #28 ENSCARG00000016050 vat1 (ENSCARG00000016057) rnd2 (ENSCARG00000016068) ENSCARG00000016088 MRC2 (ENSCARG00000016205) tlk2 (ENSCARG00000019314) mettl2a (ENSCARG00000020135) itgb3a (ENSCARG00000020529) rprml (ENSCARG00000023497) hirip3 (ENSCARG00000023502) Cyprininae_a ANCESTRAL SPECIES ENSGT00390000010440.h #22 Common carp reference MODERN SPECIES 1 tcap (ENSCCRG00000058197) zgc:123295 (ENSCCRG00000053214) zgc:112038 (ENSCCRG00000037376) zgc:123295 (ENSCCRG00000075360) ENSCCRG00000029846 ENSCCRG00000058911 nlk1 (ENSCCRG00000029985) ENSCCRG00000039928 FAM117A (ENSCCRG00000039941) slc35b1 (ENSCCRG00000039955) ndufa4a (ENSCCRG00000064261) spop (ENSCCRG00000070256) NXPH3 (ENSCCRG00000061205) NGFR (ENSCCRG00000008669) selenow2a (ENSCCRG00000082469) ##22 selenow2b (ENSCCRG00000065161) #22 slc4a1a (ENSCCRG00000010545) #23 ubtf (ENSCCRG00000015544) #25 atxn7l3a (ENSCCRG00000017230) tmub2 (ENSCCRG00000008660) #27 asb16 (ENSCCRG00000017234) #28 ENSCCRG00000017238 vat1 (ENSCCRG00000058207) ENSCCRG00000065467 rnd2 (ENSCCRG00000077623) ENSCCRG00000032612 mettl2a (ENSCCRG00000010206) itgb3a (ENSCCRG00000006571) rprml (ENSCCRG00000061133) hirip3 (ENSCCRG00000051794) ENSCCRG00000051786 Zebrafish MODERN SPECIES 18 zgc:112038 (ENSDARG00000046140) zgc:123295 (ENSDARG00000056324) ENSDARG00000074899 cdipt (ENSDARG00000070686) ENSDARG00000087330 nlk1 (ENSDARG00000006566) tlcd3ba (ENSDARG00000026875) RUNDC3A (ENSDARG00000007245) FAM117A (ENSDARG00000078640) slc35b1 (ENSDARG00000038213) ndufa4a (ENSDARG00000099499) spop (ENSDARG00000100519) NXPH3 (ENSDARG00000070694) NGFR (ENSDARG00000088708) selenow2a (ENSDARG00000038228) ##22 selenow2b (ENSDARG00000089936) #22 slc4a1a (ENSDARG00000012881) #23 ubtf (ENSDARG00000035066) #25 atxn7l3a (ENSDARG00000029331) tmub2 (ENSDARG00000056467) #27 asb16 (ENSDARG00000056468) #28 vat1 (ENSDARG00000056481) rnd2 (ENSDARG00000070735) MRC2 (ENSDARG00000078135) tlk2 (ENSDARG00000010779) mettl2a (ENSDARG00000008105) itgb3a (ENSDARG00000056767) rprml (ENSDARG00000056768) zgc:163079 (ENSDARG00000056773) ENSDARG00000101956 ENSDARG00000101990 Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 60 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00390000010440.h #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 Otomorpha ANCESTRAL SPECIES 36 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Clupeiformes ANCESTRAL SPECIES 155 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l.d ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154268.l ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253.t.b ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.e.a ENSGT00390000012062 ENSGT00940000166828 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 17 DDX39A (ENSDCDG00000014300) ENSDCDG00000014350 ENSDCDG00000014679 txn2 (ENSDCDG00000014684) PMM1 (ENSDCDG00000014692) CSDC2 (ENSDCDG00000014701) polr3h (ENSDCDG00000014710) aco2 (ENSDCDG00000014738) TOB2 (ENSDCDG00000014782) tefb (ENSDCDG00000014799) ZC3H7B (ENSDCDG00000014806) ENSDCDG00000014808 rbx1 (ENSDCDG00000014818) st13 (ENSDCDG00000014821) NGFR (ENSDCDG00000014824) selenow2a (ENSDCDG00000014831) ##22 ENSDCDG00000014832 slc4a1a (ENSDCDG00000014856) #23 ubtf (ENSDCDG00000015891) #25 ENSDCDG00000016063 ENSDCDG00000016069 ENSDCDG00000016071 MCOLN1 (ENSDCDG00000016088) ENSDCDG00000016271 pkn1b (ENSDCDG00000016321) ENSDCDG00000020239 ENSDCDG00000020243 LRRC8E (ENSDCDG00000020248) DDX39A (ENSDCDG00000020253) ENSDCDG00000020274 txn2 (ENSDCDG00000020323) Denticle herring MODERN SPECIES 17 ENSDCDG00000004824 limd2 (ENSDCDG00000004827) ddx42 (ENSDCDG00000004861) rnf113a (ENSDCDG00000004923) RUNDC3A (ENSDCDG00000004935) ENSDCDG00000004970 ENSDCDG00000004971 ENSDCDG00000004972 ENSDCDG00000004973 slc35b1 (ENSDCDG00000004974) ndufa4a (ENSDCDG00000004976) spop (ENSDCDG00000004979) NXPH3 (ENSDCDG00000004980) NXPH3 (ENSDCDG00000004981) NGFR (ENSDCDG00000004984) selenow2a (ENSDCDG00000004988) ##22 ENSDCDG00000004992 slc4a1a (ENSDCDG00000004996) #23 ubtf (ENSDCDG00000005186) #25 ENSDCDG00000005213 ENSDCDG00000005216 MCOLN1 (ENSDCDG00000005225) ENSDCDG00000005316 pkn1b (ENSDCDG00000005321) ENSDCDG00000005425 ENSDCDG00000013934 LRRC8E (ENSDCDG00000013968) DDX39A (ENSDCDG00000014300) ENSDCDG00000014350 ENSDCDG00000014679 txn2 (ENSDCDG00000014684) Atlantic herring MODERN SPECIES slc35b1 (ENSCHAG00000008733) FAM117A (ENSCHAG00000009073) RUNDC3A (ENSCHAG00000009114) ENSCHAG00000009129 ENSCHAG00000009140 ENSCHAG00000009169 rnf113a (ENSCHAG00000009175) strada (ENSCHAG00000009246) ddx42 (ENSCHAG00000009427) limd2 (ENSCHAG00000009547) MAP3K3 (ENSCHAG00000009572) gfap (ENSCHAG00000010212) kcnh6a (ENSCHAG00000010459) dcaf7 (ENSCHAG00000010570) ccdc47 (ENSCHAG00000010602) selenow2a (ENSCHAG00000010747) ##22 slc4a1a (ENSCHAG00000010815) #23 ubtf (ENSCHAG00000012302) #25 atxn7l3a (ENSCHAG00000012748) asb16 (ENSCHAG00000012893) #28 ENSCHAG00000012905 #29 ENSCHAG00000012911 #30 asic2 (ENSCHAG00000012932) ##30 MPP3 (ENSCHAG00000013278) ENSCHAG00000013943 ENSCHAG00000013971 ENSCHAG00000013987 ENSCHAG00000014004 ENSCHAG00000014020 tmem98 (ENSCHAG00000014052) ENSCHAG00000014087 Otophysi ANCESTRAL SPECIES 46 ENSGT00390000014062 ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000177451 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a Characiphysae ANCESTRAL SPECIES 11 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Characiphysae_b ANCESTRAL SPECIES 30 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 Characoidei ANCESTRAL SPECIES 25 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Mexicana tetra MODERN SPECIES 45 slc35b1 (ENSAMXG00000032034) ndufa4a (ENSAMXG00000002982) spop (ENSAMXG00000003082) NXPH3 (ENSAMXG00000041514) NGFR (ENSAMXG00000040581) selenow2a (ENSAMXG00000033118) ##22 ENSAMXG00000030771 slc4a1a (ENSAMXG00000015300) #23 ubtf (ENSAMXG00000035871) #25 atxn7l3a (ENSAMXG00000038051) tmub2 (ENSAMXG00000043336) #27 asb16 (ENSAMXG00000015407) #28 ENSAMXG00000032402 vat1 (ENSAMXG00000036949) ENSAMXG00000036024 rnd2 (ENSAMXG00000031503) MRC2 (ENSAMXG00000010776) tlk2 (ENSAMXG00000041307) mettl2a (ENSAMXG00000015090) itgb3a (ENSAMXG00000015136) ENSAMXG00000040234 Red-bellied piranha MODERN SPECIES 12 sgf29 (ENSPNAG00000014651) nfatc2ip (ENSPNAG00000014624) spns1 (ENSPNAG00000003183) atxn2l (ENSPNAG00000014538) RUNDC3A (ENSPNAG00000003123) ENSPNAG00000003106 ENSPNAG00000003101 ENSPNAG00000003099 FAM117A (ENSPNAG00000014371) slc35b1 (ENSPNAG00000014346) ndufa4a (ENSPNAG00000014314) spop (ENSPNAG00000014291) NXPH3 (ENSPNAG00000003045) NGFR (ENSPNAG00000014190) ENSPNAG00000003042 selenow2a (ENSPNAG00000014155) ##22 slc4a1a (ENSPNAG00000014118) #23 ubtf (ENSPNAG00000013986) #25 atxn7l3a (ENSPNAG00000013956) tmub2 (ENSPNAG00000002993) #27 asb16 (ENSPNAG00000013926) #28 ENSPNAG00000002988 ENSPNAG00000002987 vat1 (ENSPNAG00000013902) rnd2 (ENSPNAG00000002981) MRC2 (ENSPNAG00000002977) tlk2 (ENSPNAG00000013857) itgb3a (ENSPNAG00000013832) rprml (ENSPNAG00000002931) ENSPNAG00000013757 tcap (ENSPNAG00000013730) Channel catfish MODERN SPECIES 11 ENSIPUG00000001371 Cdipt (ENSIPUG00000001351) Maz (ENSIPUG00000001307) nlk.2 (ENSIPUG00000001284) fam57b (ENSIPUG00000001260) ENSIPUG00000001253 ENSIPUG00000001250 rundc3a (ENSIPUG00000001220) FAM117A (ENSIPUG00000001205) slc35b1 (ENSIPUG00000001169) ndufa4a (ENSIPUG00000024420) ENSIPUG00000024418 spop (ENSIPUG00000024416) nxph3 (ENSIPUG00000024402) ngfr (ENSIPUG00000024356) selenow2a (ENSIPUG00000024355) ##22 slc4a1 (ENSIPUG00000024349) #23 UBTF (ENSIPUG00000024337) #25 atxn7l3a (ENSIPUG00000024323) Tmub2 (ENSIPUG00000024321) #27 ENSIPUG00000024319 asb16 (ENSIPUG00000024318) #28 ENSIPUG00000024315 ENSIPUG00000024313 vat1 (ENSIPUG00000024311) Rnd2 (ENSIPUG00000024310) mrc2 (ENSIPUG00000024194) tlk2 (ENSIPUG00000024193) mettl2a (ENSIPUG00000024192) ENSIPUG00000024191 itgb3a (ENSIPUG00000024190) Cyprinoidei ANCESTRAL SPECIES 65 ENSGT00940000163160.b.d.a.a ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00390000010440.g.a ##22 ENSGT00390000010440.h #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000163160.b.d.b Cyprininae ANCESTRAL SPECIES 269 ENSGT00990000204783.d ENSGT00960000187164.d ENSGT00940000158922.d.d ENSGT00950000183046.a.b.l.a ENSGT00940000157900.p ENSGT00940000154268.k.a.c.a ENSGT00940000154376.a.a.b ENSGT00950000182883.a.a.a.d ENSGT00730000110974.a.d ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.c #23 ENSGT00940000166349.n #25 ENSGT00940000158253.db.a ENSGT00390000014069.b.l #27 ENSGT00940000154578.A.c.b.d.l ENSGT00940000157579.a.c ENSGT00940000157020.g.a.d ENSGT01050000244842.a.b.b.b.j ENSGT00950000182984.b.a.a.c.a.d ENSGT01090000259987.b.b.a.a.a.a.d ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g ENSGT00940000160492.b ENSGT00940000159252.b.b.d Cyprininae_a ANCESTRAL SPECIES 113 ENSGT00940000158922.d.d ENSGT00950000183046.a.b.l.a ENSGT00940000157900.p ENSGT00940000154268.k.a.c.a ENSGT00940000154376.a.a.b ENSGT00950000182883.a.a.a.d ENSGT00730000110974.a.d ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.c #23 ENSGT00940000166349.n #25 ENSGT00940000158253.db.a ENSGT00390000014069.b.l #27 ENSGT00940000160773.h #28 ENSGT00940000154578.A.c.b.d.l ENSGT00940000157579.a.c ENSGT00940000157020.g.a.d ENSGT01050000244842.a.b.b.b.j ENSGT00950000182984.b.a.a.c.a.d ENSGT00940000156059.o ENSGT01090000259987.b.b.a.a.a.a.c.b ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g Common carp reference DUPLICATION Common carp reference MODERN SPECIES 3 ENSCCRG00000078937 ENSCCRG00000040560 tcap (ENSCCRG00000076036) zgc:123295 (ENSCCRG00000028123) ENSCCRG00000037739 ENSCCRG00000056548 nlk1 (ENSCCRG00000039894) tlcd3ba (ENSCCRG00000062094) ENSCCRG00000049848 FAM117A (ENSCCRG00000070826) slc35b1 (ENSCCRG00000049949) ndufa4a (ENSCCRG00000050500) spop (ENSCCRG00000011772) NXPH3 (ENSCCRG00000037538) NGFR (ENSCCRG00000011220) selenow2a (ENSCCRG00000067963) ##22 slc4a1a (ENSCCRG00000077482) #23 ubtf (ENSCCRG00000008775) #25 atxn7l3a (ENSCCRG00000008754) tmub2 (ENSCCRG00000080193) #27 asb16 (ENSCCRG00000008740) #28 ENSCCRG00000061047 vat1 (ENSCCRG00000066633) rnd2 (ENSCCRG00000024725) MRC2 (ENSCCRG00000011390) tlk2 (ENSCCRG00000066124) mettl2a (ENSCCRG00000008201) itgb3a (ENSCCRG00000049656) rprml (ENSCCRG00000058144) hirip3 (ENSCCRG00000051117) kctd13 (ENSCCRG00000051112) Common carp reference MODERN SPECIES 1 ENSCCRG00000072003 tcap (ENSCCRG00000058197) zgc:123295 (ENSCCRG00000053214) zgc:112038 (ENSCCRG00000037376) zgc:123295 (ENSCCRG00000075360) ENSCCRG00000029846 ENSCCRG00000058911 nlk1 (ENSCCRG00000029985) ENSCCRG00000039928 FAM117A (ENSCCRG00000039941) slc35b1 (ENSCCRG00000039955) ndufa4a (ENSCCRG00000064261) spop (ENSCCRG00000070256) NXPH3 (ENSCCRG00000061205) NGFR (ENSCCRG00000008669) selenow2a (ENSCCRG00000082469) ##22 selenow2b (ENSCCRG00000065161) #22 slc4a1a (ENSCCRG00000010545) #23 ubtf (ENSCCRG00000015544) #25 atxn7l3a (ENSCCRG00000017230) tmub2 (ENSCCRG00000008660) #27 asb16 (ENSCCRG00000017234) #28 ENSCCRG00000017238 vat1 (ENSCCRG00000058207) ENSCCRG00000065467 rnd2 (ENSCCRG00000077623) ENSCCRG00000032612 mettl2a (ENSCCRG00000010206) itgb3a (ENSCCRG00000006571) rprml (ENSCCRG00000061133) hirip3 (ENSCCRG00000051794) Goldfish MODERN SPECIES 20 ENSCARG00000014184 cdipt (ENSCARG00000014413) ENSCARG00000014426 nlk1 (ENSCARG00000014437) tlcd3ba (ENSCARG00000014509) RUNDC3A (ENSCARG00000014516) ENSCARG00000014535 ENSCARG00000014537 FAM117A (ENSCARG00000014543) slc35b1 (ENSCARG00000014573) ndufa4a (ENSCARG00000015466) spop (ENSCARG00000015476) NXPH3 (ENSCARG00000015485) ENSCARG00000015486 NGFR (ENSCARG00000015495) selenow2a (ENSCARG00000015514) ##22 selenow2b (ENSCARG00000015527) #22 slc4a1a (ENSCARG00000015560) #23 ubtf (ENSCARG00000015828) #25 atxn7l3a (ENSCARG00000015976) tmub2 (ENSCARG00000016031) #27 asb16 (ENSCARG00000016042) #28 ENSCARG00000016050 vat1 (ENSCARG00000016057) rnd2 (ENSCARG00000016068) ENSCARG00000016088 MRC2 (ENSCARG00000016205) tlk2 (ENSCARG00000019314) mettl2a (ENSCARG00000020135) itgb3a (ENSCARG00000020529) rprml (ENSCARG00000023497) Zebrafish MODERN SPECIES 18 zgc:153968 (ENSDARG00000061858) zgc:112038 (ENSDARG00000046140) zgc:123295 (ENSDARG00000056324) ENSDARG00000074899 cdipt (ENSDARG00000070686) ENSDARG00000087330 nlk1 (ENSDARG00000006566) tlcd3ba (ENSDARG00000026875) RUNDC3A (ENSDARG00000007245) FAM117A (ENSDARG00000078640) slc35b1 (ENSDARG00000038213) ndufa4a (ENSDARG00000099499) spop (ENSDARG00000100519) NXPH3 (ENSDARG00000070694) NGFR (ENSDARG00000088708) selenow2a (ENSDARG00000038228) ##22 selenow2b (ENSDARG00000089936) #22 slc4a1a (ENSDARG00000012881) #23 ubtf (ENSDARG00000035066) #25 atxn7l3a (ENSDARG00000029331) tmub2 (ENSDARG00000056467) #27 asb16 (ENSDARG00000056468) #28 vat1 (ENSDARG00000056481) rnd2 (ENSDARG00000070735) MRC2 (ENSDARG00000078135) tlk2 (ENSDARG00000010779) mettl2a (ENSDARG00000008105) itgb3a (ENSDARG00000056767) rprml (ENSDARG00000056768) zgc:163079 (ENSDARG00000056773) ENSDARG00000101956 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00390000010440.g.a ##22 Protacanthopterygii ANCESTRAL SPECIES 8 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01090000260346 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.l ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00390000001488 ENSGT00980000199397 ENSGT00390000004692.d.a.n ENSGT00940000163111.a.a ENSGT00530000063936.a.b ENSGT00950000182886.a.a.b.t ENSGT00940000164566.b Salmoninae ANCESTRAL SPECIES ENSGT00390000016292.d ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT01090000260346.b.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b ENSGT00940000163111.a.a ENSGT00530000063936.a.b Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a.i ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b ENSGT00940000154394.b.a.a.b.a.b.c.b.a ENSGT00980000199397.a.b Oncorhynchus ANCESTRAL SPECIES 162 ENSGT00730000110974.a.j ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #25 ENSGT00940000158253.yc.a ENSGT00390000014069.b.e #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000154991.a.a.f ##30 ENSGT00940000158693.A.f Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 3 limd2 (ENSOMYG00000006198) ddx42 (ENSOMYG00000006634) rnf113a (ENSOMYG00000007366) strada (ENSOMYG00000007099) ENSOMYG00000007417 ENSOMYG00000007446 ENSOMYG00000007469 ENSOMYG00000007481 ENSOMYG00000007511 slc35b1 (ENSOMYG00000007708) ENSOMYG00000065517 spop (ENSOMYG00000007883) NXPH3 (ENSOMYG00000007928) NGFR (ENSOMYG00000007962) ENSOMYG00000008010 ##22 selenow2a (ENSOMYG00000069176) ##22 slc4a1a (ENSOMYG00000008303) #23 ubtf (ENSOMYG00000008651) #25 atxn7l3a (ENSOMYG00000008839) tmub2 (ENSOMYG00000054590) #27 asb16 (ENSOMYG00000008866) #28 ENSOMYG00000008901 #29 ENSOMYG00000075912 ENSOMYG00000071360 #30 ENSOMYG00000009033 ##30 ENSOMYG00000009127 ENSOMYG00000009362 ENSOMYG00000009543 ENSOMYG00000058131 ENSOMYG00000072635 ENSOMYG00000066848 Rainbow trout MODERN SPECIES 4 ENSOMYG00000005959 ENSOMYG00000006091 ENSOMYG00000006102 ENSOMYG00000006123 FAM117A (ENSOMYG00000006145) slc35b1 (ENSOMYG00000006195) ndua4 (ENSOMYG00000007771) spop (ENSOMYG00000006388) ENSOMYG00000057878 NXPH3 (ENSOMYG00000006479) ENSOMYG00000077469 NGFR (ENSOMYG00000006619) ENSOMYG00000070398 ENSOMYG00000006655 #21 ENSOMYG00000051649 ##22 selenow2a (ENSOMYG00000006692) ##22 slc4a1a (ENSOMYG00000006966) #23 ubtf (ENSOMYG00000007387) #25 atxn7l3a (ENSOMYG00000007563) tmub2 (ENSOMYG00000007616) #27 asb16 (ENSOMYG00000007634) #28 ENSOMYG00000007658 #29 ENSOMYG00000065520 #30 ENSOMYG00000007815 ##30 ENSOMYG00000008272 ENSOMYG00000008416 ENSOMYG00000017359 ENSOMYG00000065234 ENSOMYG00000077206 asf1ba (ENSOMYG00000008551) prkacaa (ENSOMYG00000009245) Oncorhynchus_a ANCESTRAL SPECIES 243 ENSGT00730000110974.a.i.a ENSGT00940000162556.G.d.h.b.a #21 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #25 ENSGT00940000158253.yc.a ENSGT00390000014069.b.e #27 ENSGT00940000160773.f.a #28 Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 239 NGFR (ENSOTSG00005038244) ENSOTSG00005038246 #21 MIEN1 (ENSOTSG00005038248) ##22 selenow2a (ENSOTSG00005038251) ##22 slc4a1a (ENSOTSG00005038255) #23 ubtf (ENSOTSG00005038330) #25 ENSOTSG00005039831 atxn7l3a (ENSOTSG00005039833) tmub2 (ENSOTSG00005039838) #27 asb16 (ENSOTSG00005039841) #28 ENSOTSG00005039842 #29 ENSOTSG00005039843 #30 Chinook salmon MODERN SPECIES 85 NGFR (ENSOTSG00005037616) ENSOTSG00005037619 #21 MIEN1 (ENSOTSG00005037621) ##22 selenow2a (ENSOTSG00005037623) ##22 slc4a1a (ENSOTSG00005037627) #23 ubtf (ENSOTSG00005037680) #25 atxn7l3a (ENSOTSG00005037752) tmub2 (ENSOTSG00005037753) #27 asb16 (ENSOTSG00005037754) #28 ENSOTSG00005037755 #29 ENSOTSG00005037756 #30 Coho salmon MODERN SPECIES 26 strada (ENSOKIG00005032199) rnf113a (ENSOKIG00005033056) RUNDC3A (ENSOKIG00005033098) ENSOKIG00005033537 ENSOKIG00005033543 ENSOKIG00005033550 FAM117A (ENSOKIG00005033565) slc35b1 (ENSOKIG00005033631) ENSOKIG00005033755 spop (ENSOKIG00005033765) NGFR (ENSOKIG00005033821) ENSOKIG00005033847 ENSOKIG00005033854 #21 ENSOKIG00005033869 ##21 MIEN1 (ENSOKIG00005033874) ##22 selenow2a (ENSOKIG00005033900) ##22 slc4a1a (ENSOKIG00005033939) #23 ubtf (ENSOKIG00005034233) #25 ENSOKIG00005034716 atxn7l3a (ENSOKIG00005034724) tmub2 (ENSOKIG00005034749) #27 asb16 (ENSOKIG00005034758) #28 ENSOKIG00005034763 #29 ENSOKIG00005034772 #30 ASIC2 (ENSOKIG00005034821) ##30 ENSOKIG00005035054 ENSOKIG00005035078 RRN3 (ENSOKIG00005035508) ENSOKIG00005035692 ENSOKIG00005035709 ENSOKIG00005035739 Salmo ANCESTRAL SPECIES 219 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.m #23 ENSGT00940000166349.g.a #25 ENSGT00940000158253.ad.a ENSGT00390000014069.b.g #27 ENSGT00940000160773.e.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000154991.a.b #30 ENSGT00400000022305.h #29 ENSGT00940000154991.a.a.g ##30 ENSGT00940000158693.A.f ENSGT00390000001488.p Atlantic salmon MODERN SPECIES 22 gfap (ENSSSAG00000045892) ENSSSAG00000001385 ddx42 (ENSSSAG00000001177) ENSSSAG00000001102 rnf113a (ENSSSAG00000040392) ENSSSAG00000114487 ENSSSAG00000001029 ENSSSAG00000001023 FAM117A (ENSSSAG00000001000) s35b1 (ENSSSAG00000000988) spop (ENSSSAG00000000960) NXPH3 (ENSSSAG00000100957) NGFR (ENSSSAG00000099650) ENSSSAG00000121971 ENSSSAG00000102819 ##21 selenow2a (ENSSSAG00000091831) ##22 slc4a1a (ENSSSAG00000001877) #23 ubtf (ENSSSAG00000047681) #25 atxn7l3a (ENSSSAG00000010897) tmub2 (ENSSSAG00000092439) #27 asb16 (ENSSSAG00000003381) #28 ENSSSAG00000001752 #29 ENSSSAG00000001986 ##30 ENSSSAG00000001964 ENSSSAG00000115856 ENSSSAG00000001933 ENSSSAG00000108890 ENSSSAG00000119563 ENSSSAG00000109863 ENSSSAG00000106784 prkacaa (ENSSSAG00000091909) River trout MODERN SPECIES 25 limd2 (ENSSTUG00000010876) ddx42 (ENSSTUG00000010932) strada (ENSSTUG00000010993) rnf113a (ENSSTUG00000011287) RUNDC3A (ENSSTUG00000011397) ENSSTUG00000011469 ENSSTUG00000011472 ENSSTUG00000011481 FAM117A (ENSSTUG00000011495) slc35b1 (ENSSTUG00000011509) NDUFA4 (ENSSTUG00000011529) NXPH3 (ENSSTUG00000011547) NGFR (ENSSTUG00000011551) ENSSTUG00000011574 ##21 MIEN1 (ENSSTUG00000011587) ##22 selenow2a (ENSSTUG00000011618) ##22 slc4a1a (ENSSTUG00000011652) #23 ENSSTUG00000011836 ubtf (ENSSTUG00000011856) #25 ENSSTUG00000012160 atxn7l3a (ENSSTUG00000012169) tmub2 (ENSSTUG00000012226) #27 asb16 (ENSSTUG00000012239) #28 ENSSTUG00000012247 #29 ENSSTUG00000012253 #30 ENSSTUG00000012259 asic2 (ENSSTUG00000012265) ##30 trpm4a (ENSSTUG00000012285) RRN3 (ENSSTUG00000036705) ENSSTUG00000037293 ENSSTUG00000037298 Northern pike MODERN SPECIES 10 ddx42 (ENSELUG00000020593) strada (ENSELUG00000020637) rnf113a (ENSELUG00000020657) ENSELUG00000020665 ENSELUG00000020675 RUNDC3A (ENSELUG00000020709) ENSELUG00000020723 slc35b1 (ENSELUG00000020756) ENSELUG00000020792 spop (ENSELUG00000021725) NXPH3 (ENSELUG00000021845) ENSELUG00000021850 NGFR (ENSELUG00000021915) ENSELUG00000021930 #21 MIEN1 (ENSELUG00000021956) ##22 selenow2a (ENSELUG00000021964) ##22 slc4a1a (ENSELUG00000021990) #23 ubtf (ENSELUG00000022011) #25 atxn7l3a (ENSELUG00000022068) tmub2 (ENSELUG00000022078) #27 asb16 (ENSELUG00000022103) #28 ENSELUG00000022131 #29 ENSELUG00000022146 #30 asic2 (ENSELUG00000022180) ##30 RRN3 (ENSELUG00000022239) ENSELUG00000022251 ENSELUG00000026953 ENSELUG00000031082 ENSELUG00000022300 ENSELUG00000032997 asf1ba (ENSELUG00000022338) Clupeocephala ANCESTRAL SPECIES ENSGT00390000010440.g.b ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00390000010440.g.b ##22 Protacanthopterygii ANCESTRAL SPECIES 8 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01090000260346 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.l ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00390000001488 ENSGT00980000199397 ENSGT00390000004692.d.a.n ENSGT00940000163111.a.a ENSGT00530000063936.a.b ENSGT00950000182886.a.a.b.t Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00390000010440.g.b.a.a ##22 Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00390000016292.d ENSGT00940000158767.g.a.a.b ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a.i ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b Oncorhynchus ANCESTRAL SPECIES 71 ENSGT00940000158827.cb ENSGT00390000016292.c.b ENSGT00940000158922.d.g.a ENSGT00940000164651.b.b ENSGT00950000183046.a.b.l.h ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000164651.b.a ENSGT00950000183046.a.b.l.g ENSGT00940000157900.n ENSGT00940000154268.l.a ENSGT00940000154376.a.a.g.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a.i ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.a.a ##22 ENSGT00940000177451 ENSGT00940000157423.a.a.o #23 ENSGT00940000166349.i.b #25 ENSGT00940000158253.yc.b ENSGT00390000014069.b.f #27 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b.d #30 ENSGT00940000154991.a.a.e.a ##30 ENSGT00390000001488 ENSGT00970000193390.c.b.b.b.a.u.b ENSGT00940000166524.g ENSGT00940000166551.c.a.b ENSGT00530000063679.B.k ENSGT00940000155764.A.a.e.d Rainbow trout MODERN SPECIES 4 rnf113a (ENSOMYG00000004364) ENSOMYG00000005959 ENSOMYG00000006091 ENSOMYG00000006102 ENSOMYG00000006123 FAM117A (ENSOMYG00000006145) slc35b1 (ENSOMYG00000006195) ndua4 (ENSOMYG00000007771) spop (ENSOMYG00000006388) ENSOMYG00000057878 NXPH3 (ENSOMYG00000006479) ENSOMYG00000077469 NGFR (ENSOMYG00000006619) ENSOMYG00000070398 ENSOMYG00000006655 #21 ENSOMYG00000051649 ##22 selenow2a (ENSOMYG00000006692) ##22 slc4a1a (ENSOMYG00000006966) #23 ubtf (ENSOMYG00000007387) #25 atxn7l3a (ENSOMYG00000007563) tmub2 (ENSOMYG00000007616) #27 asb16 (ENSOMYG00000007634) #28 ENSOMYG00000007658 #29 ENSOMYG00000065520 #30 ENSOMYG00000007815 ##30 ENSOMYG00000008272 ENSOMYG00000008416 ENSOMYG00000017359 ENSOMYG00000065234 ENSOMYG00000077206 asf1ba (ENSOMYG00000008551) Oncorhynchus_a ANCESTRAL SPECIES 62 ENSGT00940000158377.a.c ENSGT00940000156559.o ENSGT00940000158827.cb ENSGT00390000016292.c.a.a ENSGT00980000200496.a ENSGT01090000260346.b.a.a.a ENSGT00940000158922.d.g.a ENSGT00940000164651.b.b ENSGT00950000183046.a.b.l.g ENSGT00940000157900.n.b ENSGT00940000154268.l.b ENSGT00940000154376.a.a.g.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a.i.b ENSGT00940000162556.G.d.h.b.b #21 ENSGT00390000010440.g.b.a.a ##22 ENSGT00940000177451 ENSGT00940000157423.a.a.o #23 ENSGT00940000166349.i.b #25 ENSGT00940000158253.yc.b ENSGT00390000014069.b.f #27 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a.a #29 ENSGT00940000154991.a.b.d #30 ENSGT00940000154991.a.a.e.a ##30 ENSGT00940000154991.a.a.f ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00970000193390.c.b.b.a.m ENSGT00940000154394.b.a.a.b.a.b.d.a.a.b ENSGT00940000163111.a.a.h Chinook salmon MODERN SPECIES 85 NGFR (ENSOTSG00005037616) ENSOTSG00005037619 #21 MIEN1 (ENSOTSG00005037621) ##22 selenow2a (ENSOTSG00005037623) ##22 slc4a1a (ENSOTSG00005037627) #23 ubtf (ENSOTSG00005037680) #25 atxn7l3a (ENSOTSG00005037752) tmub2 (ENSOTSG00005037753) #27 asb16 (ENSOTSG00005037754) #28 ENSOTSG00005037755 #29 ENSOTSG00005037756 #30 Coho salmon MODERN SPECIES 1 ddx42 (ENSOKIG00005009092) strada (ENSOKIG00005009172) rnf113a (ENSOKIG00005009328) RUNDC3A (ENSOKIG00005009517) ENSOKIG00005010175 ENSOKIG00005010180 ENSOKIG00005010190 ENSOKIG00005010196 slc35b1 (ENSOKIG00005010217) NDUFA4 (ENSOKIG00005010275) spop (ENSOKIG00005010306) NXPH3 (ENSOKIG00005010350) ENSOKIG00005010354 NGFR (ENSOKIG00005010367) ENSOKIG00005010413 #21 MIEN1 (ENSOKIG00005010420) ##22 ENSOKIG00005010436 slc4a1a (ENSOKIG00005010463) #23 ubtf (ENSOKIG00005031963) #25 atxn7l3a (ENSOKIG00005032153) tmub2 (ENSOKIG00005032181) #27 asb16 (ENSOKIG00005032194) #28 ENSOKIG00005032219 #29 ENSOKIG00005032227 #30 ENSOKIG00005032232 ASIC2 (ENSOKIG00005032249) ##30 RRN3 (ENSOKIG00005032420) ENSOKIG00005032477 ENSOKIG00005032487 ENSOKIG00005032496 crb3a (ENSOKIG00005032512) Salmoninae ANCESTRAL SPECIES ENSGT00390000016292.c.b ENSGT00390000016292.d ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT01090000260346.b.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b ENSGT00940000163111.a.a Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00940000158767.g.a.a.b ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a.i ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #25 ENSGT00940000158253 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b ENSGT00940000154394.b.a.a.b.a.b.c.b.a Oncorhynchus ANCESTRAL SPECIES 162 ENSGT00730000110974.a.j ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #25 ENSGT00940000158253.yc.a ENSGT00390000014069.b.e #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b #29 ENSGT00940000154991.a.a.f ##30 ENSGT00940000158693.A.f Rainbow trout MODERN SPECIES 3 ENSOMYG00000005900 limd2 (ENSOMYG00000006198) ddx42 (ENSOMYG00000006634) rnf113a (ENSOMYG00000007366) strada (ENSOMYG00000007099) ENSOMYG00000007417 ENSOMYG00000007446 ENSOMYG00000007469 ENSOMYG00000007481 ENSOMYG00000007511 slc35b1 (ENSOMYG00000007708) ENSOMYG00000065517 spop (ENSOMYG00000007883) NXPH3 (ENSOMYG00000007928) NGFR (ENSOMYG00000007962) ENSOMYG00000008010 ##22 selenow2a (ENSOMYG00000069176) ##22 slc4a1a (ENSOMYG00000008303) #23 ubtf (ENSOMYG00000008651) #25 atxn7l3a (ENSOMYG00000008839) tmub2 (ENSOMYG00000054590) #27 asb16 (ENSOMYG00000008866) #28 ENSOMYG00000008901 #29 ENSOMYG00000075912 ENSOMYG00000071360 #30 ENSOMYG00000009033 ##30 ENSOMYG00000009127 ENSOMYG00000009362 ENSOMYG00000009543 ENSOMYG00000058131 ENSOMYG00000072635 Oncorhynchus_a ANCESTRAL SPECIES 243 ENSGT00730000110974.a.i.a ENSGT00940000162556.G.d.h.b.a #21 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a ##22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #25 ENSGT00940000158253.yc.a ENSGT00390000014069.b.e #27 ENSGT00940000160773.f.a #28 Coho salmon MODERN SPECIES 26 ddx42 (ENSOKIG00005032022) strada (ENSOKIG00005032199) rnf113a (ENSOKIG00005033056) RUNDC3A (ENSOKIG00005033098) ENSOKIG00005033537 ENSOKIG00005033543 ENSOKIG00005033550 FAM117A (ENSOKIG00005033565) slc35b1 (ENSOKIG00005033631) ENSOKIG00005033755 spop (ENSOKIG00005033765) NGFR (ENSOKIG00005033821) ENSOKIG00005033847 ENSOKIG00005033854 #21 ENSOKIG00005033869 ##21 MIEN1 (ENSOKIG00005033874) ##22 selenow2a (ENSOKIG00005033900) ##22 slc4a1a (ENSOKIG00005033939) #23 ubtf (ENSOKIG00005034233) #25 ENSOKIG00005034716 atxn7l3a (ENSOKIG00005034724) tmub2 (ENSOKIG00005034749) #27 asb16 (ENSOKIG00005034758) #28 ENSOKIG00005034763 #29 ENSOKIG00005034772 #30 ASIC2 (ENSOKIG00005034821) ##30 ENSOKIG00005035054 ENSOKIG00005035078 RRN3 (ENSOKIG00005035508) ENSOKIG00005035692 ENSOKIG00005035709 Chinook salmon MODERN SPECIES 239 NGFR (ENSOTSG00005038244) ENSOTSG00005038246 #21 MIEN1 (ENSOTSG00005038248) ##22 selenow2a (ENSOTSG00005038251) ##22 slc4a1a (ENSOTSG00005038255) #23 ubtf (ENSOTSG00005038330) #25 ENSOTSG00005039831 atxn7l3a (ENSOTSG00005039833) tmub2 (ENSOTSG00005039838) #27 asb16 (ENSOTSG00005039841) #28 ENSOTSG00005039842 #29 ENSOTSG00005039843 #30 Huchen MODERN SPECIES 126 plscr3b (ENSHHUG00000041882) plscr3b (ENSHHUG00000041831) tnk1 (ENSHHUG00000041820) trmt44 (ENSHHUG00000041799) GPR78 (ENSHHUG00000041782) CPZ (ENSHHUG00000041763) ENSHHUG00000041759 HMX1 (ENSHHUG00000041758) ADRA2C (ENSHHUG00000041745) ENSHHUG00000041739 ENSHHUG00000041733 DOK7 (ENSHHUG00000041707) HGFAC (ENSHHUG00000041687) NGFR (ENSHHUG00000041680) ENSHHUG00000041675 #21 MIEN1 (ENSHHUG00000041669) ##22 slc4a1a (ENSHHUG00000040720) #23 ubtf (ENSHHUG00000040714) #25 atxn7l3a (ENSHHUG00000040702) tmub2 (ENSHHUG00000040700) #27 ENSHHUG00000040698 #28 ENSHHUG00000040686 #29 Salmoninae ANCESTRAL SPECIES 2063 ENSGT00390000010440.g.b.b ##22 ENSGT00940000177451 Salmoninae_a ANCESTRAL SPECIES 940 ENSGT00390000010440.g.b.b ##22 ENSGT00940000177451 Salmo ANCESTRAL SPECIES 111 ENSGT00390000013997.o.a ENSGT00940000159539.o ENSGT00940000158767.g.b ENSGT00940000158377.a.c ENSGT00940000156559.n ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00940000158922.d.f ENSGT00950000183046.a.b.l.h ENSGT00940000157900.m.b ENSGT00940000154268.l.b ENSGT00940000154376.a.a.e ENSGT00950000182883.a.a.a.j ENSGT00730000110974.a.i ENSGT00940000162556.G.d.h #21 ENSGT00390000010440.g.b.b ##22 ENSGT00940000177451 ENSGT00940000157423.a.a.n #23 ENSGT00940000166349.g.b #25 ENSGT00940000158253.ad.b ENSGT00390000014069.b.h #27 ENSGT00940000160773.e.b #28 ENSGT00400000022305.g.a #29 River trout DUPLICATION River trout MODERN SPECIES 25 MAP3K3 (ENSSTUG00000010827) limd2 (ENSSTUG00000010876) ddx42 (ENSSTUG00000010932) strada (ENSSTUG00000010993) rnf113a (ENSSTUG00000011287) RUNDC3A (ENSSTUG00000011397) ENSSTUG00000011469 ENSSTUG00000011472 ENSSTUG00000011481 FAM117A (ENSSTUG00000011495) slc35b1 (ENSSTUG00000011509) NDUFA4 (ENSSTUG00000011529) NXPH3 (ENSSTUG00000011547) NGFR (ENSSTUG00000011551) ENSSTUG00000011574 ##21 MIEN1 (ENSSTUG00000011587) ##22 selenow2a (ENSSTUG00000011618) ##22 slc4a1a (ENSSTUG00000011652) #23 ENSSTUG00000011836 ubtf (ENSSTUG00000011856) #25 ENSSTUG00000012160 atxn7l3a (ENSSTUG00000012169) tmub2 (ENSSTUG00000012226) #27 asb16 (ENSSTUG00000012239) #28 ENSSTUG00000012247 #29 ENSSTUG00000012253 #30 ENSSTUG00000012259 asic2 (ENSSTUG00000012265) ##30 trpm4a (ENSSTUG00000012285) RRN3 (ENSSTUG00000036705) ENSSTUG00000037293 River trout MODERN SPECIES kcnh6a (ENSSTUG00000000205) gfap (ENSSTUG00000000241) MAP3K3 (ENSSTUG00000000257) limd2 (ENSSTUG00000000292) ddx42 (ENSSTUG00000000304) strada (ENSSTUG00000000336) rnf113a (ENSSTUG00000000386) RUNDC3A (ENSSTUG00000000407) ENSSTUG00000000426 ENSSTUG00000000428 ENSSTUG00000000434 slc35b1 (ENSSTUG00000000456) ENSSTUG00000000464 NGFR (ENSSTUG00000000477) ENSSTUG00000000489 #21 MIEN1 (ENSSTUG00000000493) ##22 ENSSTUG00000000499 slc4a1a (ENSSTUG00000000511) #23 ENSSTUG00000000594 ubtf (ENSSTUG00000000628) #25 atxn7l3a (ENSSTUG00000000755) tmub2 (ENSSTUG00000000771) #27 asb16 (ENSSTUG00000000778) #28 ENSSTUG00000000781 #29 ENSSTUG00000000787 asic2 (ENSSTUG00000000790) ##30 trpm4a (ENSSTUG00000000814) RRN3 (ENSSTUG00000000879) ENSSTUG00000001387 ENSSTUG00000001392 ENSSTUG00000001395 Northern pike MODERN SPECIES 10 limd2 (ENSELUG00000020528) ddx42 (ENSELUG00000020593) strada (ENSELUG00000020637) rnf113a (ENSELUG00000020657) ENSELUG00000020665 ENSELUG00000020675 RUNDC3A (ENSELUG00000020709) ENSELUG00000020723 slc35b1 (ENSELUG00000020756) ENSELUG00000020792 spop (ENSELUG00000021725) NXPH3 (ENSELUG00000021845) ENSELUG00000021850 NGFR (ENSELUG00000021915) ENSELUG00000021930 #21 MIEN1 (ENSELUG00000021956) ##22 selenow2a (ENSELUG00000021964) ##22 slc4a1a (ENSELUG00000021990) #23 ubtf (ENSELUG00000022011) #25 atxn7l3a (ENSELUG00000022068) tmub2 (ENSELUG00000022078) #27 asb16 (ENSELUG00000022103) #28 ENSELUG00000022131 #29 ENSELUG00000022146 #30 asic2 (ENSELUG00000022180) ##30 RRN3 (ENSELUG00000022239) ENSELUG00000022251 ENSELUG00000026953 ENSELUG00000031082 ENSELUG00000022300 ENSELUG00000032997 Osteoglossiformes ANCESTRAL SPECIES 182 ENSGT00940000153560.b.a.a.n.a ENSGT00940000154244.A.a.a.k ENSGT00940000158767.c ENSGT00940000158377.a.a ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00960000187164.a ENSGT00960000187164.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.l ENSGT00940000154376.b.a ENSGT00950000182883.a.a.a.l ENSGT00730000110974.a ENSGT00390000010440 #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349.b #25 ENSGT00940000158253.q ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 Asian bonytongue MODERN SPECIES 12 MAP3K3 (ENSSFOG00015013876) TACO1 (ENSSFOG00015013916) limd2 (ENSSFOG00015016642) pth3r (ENSSFOG00015013985) ddx42 (ENSSFOG00015014064) rundc3ab (ENSSFOG00015014128) ENSSFOG00015014184 ndufa4b (ENSSFOG00015027987) spop (ENSSFOG00015014233) ENSSFOG00015014253 ENSSFOG00015027842 ENSSFOG00015023195 ENSSFOG00015033179 ENSSFOG00015032144 NGFR (ENSSFOG00015021410) selenow2a (ENSSFOG00015028894) #22 KLHL10 (ENSSFOG00015021431) KLHL10 (ENSSFOG00015021446) slc4a1b (ENSSFOG00015021462) ##23 ubtf (ENSSFOG00015021525) #25 ATXN7L3 (ENSSFOG00015030337) ENSSFOG00015021588 adprh (ENSSFOG00015030953) ENSSFOG00015033045 DOC2A (ENSSFOG00015021629) ENSSFOG00015021661 ENSSFOG00015021669 ENSSFOG00015025726 ENSSFOG00015021699 TAOK2 (ENSSFOG00015033268) cabp5a (ENSSFOG00015021742) P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 438 ngfrb (ENSPKIG00000018825) selenow2a (ENSPKIG00000018788) #22 slc4a1b (ENSPKIG00000018714) ##23 ubtf (ENSPKIG00000018615) #25 ATXN7L3 (ENSPKIG00000018564) ENSPKIG00000018462 adprh (ENSPKIG00000018398) DOC2A (ENSPKIG00000018343) ENSPKIG00000018312 MAZ (ENSPKIG00000018284) TAOK2 (ENSPKIG00000018210) cabp5a (ENSPKIG00000018179) ENSPKIG00000018171 P. kingsleyae MODERN SPECIES 247 ENSPKIG00000017043 MAP3K3 (ENSPKIG00000016969) limd2 (ENSPKIG00000016934) strada (ENSPKIG00000016871) rnf113a (ENSPKIG00000016796) ENSPKIG00000016774 ENSPKIG00000016766 RUNDC3A (ENSPKIG00000016735) FAM117A (ENSPKIG00000016710) slc35b1 (ENSPKIG00000016666) NDUFA4 (ENSPKIG00000016641) spop (ENSPKIG00000016581) NXPH3 (ENSPKIG00000016538) ENSPKIG00000016524 NGFR (ENSPKIG00000016506) selenow2b (ENSPKIG00000016480) #22 slc4a1a (ENSPKIG00000016452) #23 ENSPKIG00000016436 ubtf (ENSPKIG00000016332) #25 atxn7l3a (ENSPKIG00000016201) tmub2 (ENSPKIG00000016147) #27 asb16 (ENSPKIG00000016135) #28 ENSPKIG00000016113 #29 ENSPKIG00000016098 #30 Reedfish DUPLICATION Reedfish MODERN SPECIES 5 ENSECRG00000012332 cap1 (ENSECRG00000012381) ppt1 (ENSECRG00000012428) cap1 (ENSECRG00000012448) adprs (ENSECRG00000012469) KIAA0319L (ENSECRG00000012492) NCDN (ENSECRG00000012527) tfap2e (ENSECRG00000012554) psmb2 (ENSECRG00000012592) C1orf216 (ENSECRG00000012605) CLSPN (ENSECRG00000012629) ago4 (ENSECRG00000012804) AGO1 (ENSECRG00000013213) ago3b (ENSECRG00000013697) bmp8a (ENSECRG00000015413) selenow2a (ENSECRG00000015452) #22 erbb2 (ENSECRG00000015535) pgap3 (ENSECRG00000015644) PNMT (ENSECRG00000015719) tcap (ENSECRG00000015881) zgc:91968 (ENSECRG00000015917) stard3 (ENSECRG00000015977) ppp1r1b (ENSECRG00000016041) neurod2 (ENSECRG00000016057) CDK12 (ENSECRG00000016103) MED1 (ENSECRG00000016302) FBXL20 (ENSECRG00000016349) STAC2 (ENSECRG00000016405) 42sp43 (ENSECRG00000016444) ENSECRG00000016478 rpl19 (ENSECRG00000016501) Reedfish MODERN SPECIES 8 galk2 (ENSECRG00000022025) FGF7 (ENSECRG00000022020) DTWD1 (ENSECRG00000022015) ENSECRG00000021989 ATP8B4 (ENSECRG00000021944) spata5l1 (ENSECRG00000021927) zgc:153317 (ENSECRG00000021922) ENSECRG00000021916 slc30a4 (ENSECRG00000021911) bloc1s6 (ENSECRG00000021900) sqor (ENSECRG00000021889) mibp2 (ENSECRG00000021880) ENSECRG00000021869 SPPL2A (ENSECRG00000021827) trpm7 (ENSECRG00000021761) ENSECRG00000021733 #22 USP50 (ENSECRG00000021721) USP8 (ENSECRG00000021700) gabpb1 (ENSECRG00000021662) hdc (ENSECRG00000021252) slc27a2a (ENSECRG00000021203) ENSECRG00000021181 gatm (ENSECRG00000021172) pde8a (ENSECRG00000021121) ENSECRG00000021077 FSD2 (ENSECRG00000021063) WHAMM (ENSECRG00000021046) HOMER2 (ENSECRG00000021026) RAMAC (ENSECRG00000021018) ENSECRG00000021009 zgc:193812 (ENSECRG00000020992)