Clupeocephala ANCESTRAL SPECIES 60 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00390000010440.h ##22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00390000010440.g.a #22 Protacanthopterygii ANCESTRAL SPECIES 8 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01090000260346 ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.l ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00940000162556.G.d.h #20 ENSGT00390000010440.g.b #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00390000001488 ENSGT00980000199397 ENSGT00390000004692.d.a.n ENSGT00940000163111.a.a ENSGT00530000063936.a.b ENSGT00950000182886.a.a.b.t ENSGT00940000164566.b Salmoninae ANCESTRAL SPECIES ENSGT00390000016292.d ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT01090000260346.b.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00940000162556.G.d.h #20 ENSGT00390000010440.g.b.a.b #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ##29 ENSGT00940000160773.f.b ##28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b ENSGT00940000163111.a.a ENSGT00530000063936.a.b Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h ENSGT00940000157900.m ENSGT00940000154268.l.b ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a.i #19 ENSGT00940000162556.G.d.h #20 ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ##29 ENSGT00940000160773.f.b ##28 ENSGT00400000022305.g.a #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b ENSGT00940000154394.b.a.a.b.a.b.c.b.a ENSGT00980000199397.a.b Oncorhynchus ANCESTRAL SPECIES 162 ENSGT00730000110974.a.j ##19 ENSGT00390000010440.g.b.a.b #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #24 ENSGT00940000158253.yc.a #26 ENSGT00390000014069.b.e #27 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ##29 ENSGT00940000154991.a.a.f ##30 ENSGT00940000158693.A.f Oncorhynchus_a ANCESTRAL SPECIES 243 ENSGT00730000110974.a.i.a #19 ENSGT00940000162556.G.d.h.b.a #20 ENSGT00390000010440.g.b.a.b #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #24 ENSGT00940000158253.yc.a #26 ENSGT00390000014069.b.e #27 ENSGT00940000160773.f.a #28 Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 239 NGFR (ENSOTSG00005038244) #19 ENSOTSG00005038246 #20 MIEN1 (ENSOTSG00005038248) #21 selenow2a (ENSOTSG00005038251) #22 slc4a1a (ENSOTSG00005038255) #23 ubtf (ENSOTSG00005038330) #24 ENSOTSG00005039831 #25 atxn7l3a (ENSOTSG00005039833) #26 tmub2 (ENSOTSG00005039838) #27 asb16 (ENSOTSG00005039841) #28 ENSOTSG00005039842 #29 ENSOTSG00005039843 #30 Chinook salmon MODERN SPECIES 85 NGFR (ENSOTSG00005037616) ##19 ENSOTSG00005037619 ##20 MIEN1 (ENSOTSG00005037621) ##22 selenow2a (ENSOTSG00005037623) ##22 slc4a1a (ENSOTSG00005037627) ##23 ubtf (ENSOTSG00005037680) ##24 atxn7l3a (ENSOTSG00005037752) ##26 tmub2 (ENSOTSG00005037753) ##27 asb16 (ENSOTSG00005037754) ##28 ENSOTSG00005037755 ##29 ENSOTSG00005037756 ##30 Coho salmon MODERN SPECIES 26 strada (ENSOKIG00005032199) rnf113a (ENSOKIG00005033056) RUNDC3A (ENSOKIG00005033098) ENSOKIG00005033537 ENSOKIG00005033543 ENSOKIG00005033550 FAM117A (ENSOKIG00005033565) slc35b1 (ENSOKIG00005033631) ENSOKIG00005033755 spop (ENSOKIG00005033765) NGFR (ENSOKIG00005033821) #19 ENSOKIG00005033847 ENSOKIG00005033854 #20 ENSOKIG00005033869 ##20 MIEN1 (ENSOKIG00005033874) #21 selenow2a (ENSOKIG00005033900) #22 slc4a1a (ENSOKIG00005033939) #23 ubtf (ENSOKIG00005034233) #24 ENSOKIG00005034716 atxn7l3a (ENSOKIG00005034724) #26 tmub2 (ENSOKIG00005034749) #27 asb16 (ENSOKIG00005034758) #28 ENSOKIG00005034763 #29 ENSOKIG00005034772 #30 ASIC2 (ENSOKIG00005034821) ##30 ENSOKIG00005035054 ENSOKIG00005035078 RRN3 (ENSOKIG00005035508) ENSOKIG00005035692 ENSOKIG00005035709 ENSOKIG00005035739 Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 3 limd2 (ENSOMYG00000006198) ddx42 (ENSOMYG00000006634) rnf113a (ENSOMYG00000007366) strada (ENSOMYG00000007099) ENSOMYG00000007417 ENSOMYG00000007446 ENSOMYG00000007469 ENSOMYG00000007481 ENSOMYG00000007511 slc35b1 (ENSOMYG00000007708) ENSOMYG00000065517 spop (ENSOMYG00000007883) NXPH3 (ENSOMYG00000007928) NGFR (ENSOMYG00000007962) ##19 ENSOMYG00000008010 #21 selenow2a (ENSOMYG00000069176) #22 slc4a1a (ENSOMYG00000008303) #23 ubtf (ENSOMYG00000008651) #24 atxn7l3a (ENSOMYG00000008839) #26 tmub2 (ENSOMYG00000054590) #27 asb16 (ENSOMYG00000008866) #28 ENSOMYG00000008901 ##29 ENSOMYG00000075912 ENSOMYG00000071360 ##30 ENSOMYG00000009033 ##30 ENSOMYG00000009127 ENSOMYG00000009362 ENSOMYG00000009543 ENSOMYG00000058131 ENSOMYG00000072635 ENSOMYG00000066848 Rainbow trout MODERN SPECIES 4 ENSOMYG00000005959 ENSOMYG00000006091 ENSOMYG00000006102 ENSOMYG00000006123 FAM117A (ENSOMYG00000006145) slc35b1 (ENSOMYG00000006195) ndua4 (ENSOMYG00000007771) spop (ENSOMYG00000006388) ENSOMYG00000057878 NXPH3 (ENSOMYG00000006479) ENSOMYG00000077469 NGFR (ENSOMYG00000006619) #19 ENSOMYG00000070398 ENSOMYG00000006655 #20 ENSOMYG00000051649 ##22 selenow2a (ENSOMYG00000006692) #22 slc4a1a (ENSOMYG00000006966) ##23 ubtf (ENSOMYG00000007387) ##24 atxn7l3a (ENSOMYG00000007563) ##26 tmub2 (ENSOMYG00000007616) ##27 asb16 (ENSOMYG00000007634) #28 ENSOMYG00000007658 ##29 ENSOMYG00000065520 #30 ENSOMYG00000007815 ##30 ENSOMYG00000008272 ENSOMYG00000008416 ENSOMYG00000017359 ENSOMYG00000065234 ENSOMYG00000077206 asf1ba (ENSOMYG00000008551) prkacaa (ENSOMYG00000009245) Salmo ANCESTRAL SPECIES 219 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.m #23 ENSGT00940000166349.g.a #24 ENSGT00940000158253.ad.a #26 ENSGT00390000014069.b.g #27 ENSGT00940000160773.e.a ##28 ENSGT00400000022305.g.b ##29 ENSGT00940000154991.a.b #30 ENSGT00400000022305.h ##29 ENSGT00940000154991.a.a.g ##30 ENSGT00940000158693.A.f ENSGT00390000001488.p Atlantic salmon MODERN SPECIES 22 gfap (ENSSSAG00000045892) ENSSSAG00000001385 ddx42 (ENSSSAG00000001177) ENSSSAG00000001102 rnf113a (ENSSSAG00000040392) ENSSSAG00000114487 ENSSSAG00000001029 ENSSSAG00000001023 FAM117A (ENSSSAG00000001000) s35b1 (ENSSSAG00000000988) spop (ENSSSAG00000000960) NXPH3 (ENSSSAG00000100957) NGFR (ENSSSAG00000099650) ##19 ENSSSAG00000121971 ENSSSAG00000102819 ##20 selenow2a (ENSSSAG00000091831) #22 slc4a1a (ENSSSAG00000001877) #23 ubtf (ENSSSAG00000047681) #24 atxn7l3a (ENSSSAG00000010897) #26 tmub2 (ENSSSAG00000092439) #27 asb16 (ENSSSAG00000003381) ##28 ENSSSAG00000001752 ##29 ENSSSAG00000001986 ##30 ENSSSAG00000001964 ENSSSAG00000115856 ENSSSAG00000001933 ENSSSAG00000108890 ENSSSAG00000119563 ENSSSAG00000109863 ENSSSAG00000106784 prkacaa (ENSSSAG00000091909) River trout MODERN SPECIES 25 limd2 (ENSSTUG00000010876) ddx42 (ENSSTUG00000010932) strada (ENSSTUG00000010993) rnf113a (ENSSTUG00000011287) RUNDC3A (ENSSTUG00000011397) ENSSTUG00000011469 ENSSTUG00000011472 ENSSTUG00000011481 FAM117A (ENSSTUG00000011495) slc35b1 (ENSSTUG00000011509) NDUFA4 (ENSSTUG00000011529) NXPH3 (ENSSTUG00000011547) NGFR (ENSSTUG00000011551) #19 ENSSTUG00000011574 ##20 MIEN1 (ENSSTUG00000011587) ##22 selenow2a (ENSSTUG00000011618) #22 slc4a1a (ENSSTUG00000011652) #23 ENSSTUG00000011836 ubtf (ENSSTUG00000011856) #24 ENSSTUG00000012160 atxn7l3a (ENSSTUG00000012169) #26 tmub2 (ENSSTUG00000012226) #27 asb16 (ENSSTUG00000012239) ##28 ENSSTUG00000012247 ##29 ENSSTUG00000012253 #30 ENSSTUG00000012259 asic2 (ENSSTUG00000012265) ##30 trpm4a (ENSSTUG00000012285) RRN3 (ENSSTUG00000036705) ENSSTUG00000037293 ENSSTUG00000037298 Northern pike MODERN SPECIES 10 ddx42 (ENSELUG00000020593) strada (ENSELUG00000020637) rnf113a (ENSELUG00000020657) ENSELUG00000020665 ENSELUG00000020675 RUNDC3A (ENSELUG00000020709) ENSELUG00000020723 slc35b1 (ENSELUG00000020756) ENSELUG00000020792 spop (ENSELUG00000021725) NXPH3 (ENSELUG00000021845) ENSELUG00000021850 NGFR (ENSELUG00000021915) #19 ENSELUG00000021930 #20 MIEN1 (ENSELUG00000021956) #21 selenow2a (ENSELUG00000021964) #22 slc4a1a (ENSELUG00000021990) #23 ubtf (ENSELUG00000022011) #24 atxn7l3a (ENSELUG00000022068) #26 tmub2 (ENSELUG00000022078) #27 asb16 (ENSELUG00000022103) #28 ENSELUG00000022131 #29 ENSELUG00000022146 #30 asic2 (ENSELUG00000022180) ##30 RRN3 (ENSELUG00000022239) ENSELUG00000022251 ENSELUG00000026953 ENSELUG00000031082 ENSELUG00000022300 ENSELUG00000032997 asf1ba (ENSELUG00000022338) Otomorpha ANCESTRAL SPECIES 36 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Clupeiformes ANCESTRAL SPECIES 155 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l.d ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154268.l ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253.t.b #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00400000022305 #29 ENSGT00940000154991.a.b #30 ENSGT00940000154991.a.a ##30 ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.e.a ENSGT00390000012062 ENSGT00940000166828 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 17 DDX39A (ENSDCDG00000014300) ENSDCDG00000014350 ENSDCDG00000014679 txn2 (ENSDCDG00000014684) PMM1 (ENSDCDG00000014692) CSDC2 (ENSDCDG00000014701) polr3h (ENSDCDG00000014710) aco2 (ENSDCDG00000014738) TOB2 (ENSDCDG00000014782) tefb (ENSDCDG00000014799) ZC3H7B (ENSDCDG00000014806) ENSDCDG00000014808 rbx1 (ENSDCDG00000014818) st13 (ENSDCDG00000014821) NGFR (ENSDCDG00000014824) #19 selenow2a (ENSDCDG00000014831) #22 ENSDCDG00000014832 slc4a1a (ENSDCDG00000014856) #23 ubtf (ENSDCDG00000015891) #24 ENSDCDG00000016063 #26 ENSDCDG00000016069 ENSDCDG00000016071 MCOLN1 (ENSDCDG00000016088) ENSDCDG00000016271 pkn1b (ENSDCDG00000016321) ENSDCDG00000020239 ENSDCDG00000020243 LRRC8E (ENSDCDG00000020248) DDX39A (ENSDCDG00000020253) ENSDCDG00000020274 txn2 (ENSDCDG00000020323) Denticle herring MODERN SPECIES 17 ENSDCDG00000004824 limd2 (ENSDCDG00000004827) ddx42 (ENSDCDG00000004861) rnf113a (ENSDCDG00000004923) RUNDC3A (ENSDCDG00000004935) ENSDCDG00000004970 ENSDCDG00000004971 ENSDCDG00000004972 ENSDCDG00000004973 slc35b1 (ENSDCDG00000004974) ndufa4a (ENSDCDG00000004976) spop (ENSDCDG00000004979) NXPH3 (ENSDCDG00000004980) NXPH3 (ENSDCDG00000004981) NGFR (ENSDCDG00000004984) #19 selenow2a (ENSDCDG00000004988) #22 ENSDCDG00000004992 slc4a1a (ENSDCDG00000004996) #23 ubtf (ENSDCDG00000005186) #24 ENSDCDG00000005213 ENSDCDG00000005216 MCOLN1 (ENSDCDG00000005225) ENSDCDG00000005316 pkn1b (ENSDCDG00000005321) ENSDCDG00000005425 ENSDCDG00000013934 LRRC8E (ENSDCDG00000013968) DDX39A (ENSDCDG00000014300) ENSDCDG00000014350 ENSDCDG00000014679 txn2 (ENSDCDG00000014684) Atlantic herring MODERN SPECIES slc35b1 (ENSCHAG00000008733) FAM117A (ENSCHAG00000009073) RUNDC3A (ENSCHAG00000009114) ENSCHAG00000009129 ENSCHAG00000009140 ENSCHAG00000009169 rnf113a (ENSCHAG00000009175) strada (ENSCHAG00000009246) ddx42 (ENSCHAG00000009427) limd2 (ENSCHAG00000009547) MAP3K3 (ENSCHAG00000009572) gfap (ENSCHAG00000010212) kcnh6a (ENSCHAG00000010459) dcaf7 (ENSCHAG00000010570) ccdc47 (ENSCHAG00000010602) selenow2a (ENSCHAG00000010747) #22 slc4a1a (ENSCHAG00000010815) #23 ubtf (ENSCHAG00000012302) #24 atxn7l3a (ENSCHAG00000012748) #26 asb16 (ENSCHAG00000012893) #28 ENSCHAG00000012905 #29 ENSCHAG00000012911 #30 asic2 (ENSCHAG00000012932) ##30 MPP3 (ENSCHAG00000013278) ENSCHAG00000013943 ENSCHAG00000013971 ENSCHAG00000013987 ENSCHAG00000014004 ENSCHAG00000014020 tmem98 (ENSCHAG00000014052) ENSCHAG00000014087 Otophysi ANCESTRAL SPECIES 46 ENSGT00390000014062 ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a Characiphysae ANCESTRAL SPECIES 11 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Characiphysae_b ANCESTRAL SPECIES 30 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 Characoidei ANCESTRAL SPECIES 25 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Mexicana tetra MODERN SPECIES 45 slc35b1 (ENSAMXG00000032034) ndufa4a (ENSAMXG00000002982) spop (ENSAMXG00000003082) NXPH3 (ENSAMXG00000041514) NGFR (ENSAMXG00000040581) #19 selenow2a (ENSAMXG00000033118) #22 ENSAMXG00000030771 slc4a1a (ENSAMXG00000015300) #23 ubtf (ENSAMXG00000035871) #24 atxn7l3a (ENSAMXG00000038051) #26 tmub2 (ENSAMXG00000043336) #27 asb16 (ENSAMXG00000015407) #28 ENSAMXG00000032402 vat1 (ENSAMXG00000036949) ENSAMXG00000036024 rnd2 (ENSAMXG00000031503) MRC2 (ENSAMXG00000010776) tlk2 (ENSAMXG00000041307) mettl2a (ENSAMXG00000015090) itgb3a (ENSAMXG00000015136) ENSAMXG00000040234 Red-bellied piranha MODERN SPECIES 12 sgf29 (ENSPNAG00000014651) nfatc2ip (ENSPNAG00000014624) spns1 (ENSPNAG00000003183) atxn2l (ENSPNAG00000014538) RUNDC3A (ENSPNAG00000003123) ENSPNAG00000003106 ENSPNAG00000003101 ENSPNAG00000003099 FAM117A (ENSPNAG00000014371) slc35b1 (ENSPNAG00000014346) ndufa4a (ENSPNAG00000014314) spop (ENSPNAG00000014291) NXPH3 (ENSPNAG00000003045) NGFR (ENSPNAG00000014190) #19 ENSPNAG00000003042 selenow2a (ENSPNAG00000014155) #22 slc4a1a (ENSPNAG00000014118) #23 ubtf (ENSPNAG00000013986) #24 atxn7l3a (ENSPNAG00000013956) #26 tmub2 (ENSPNAG00000002993) #27 asb16 (ENSPNAG00000013926) #28 ENSPNAG00000002988 ENSPNAG00000002987 vat1 (ENSPNAG00000013902) rnd2 (ENSPNAG00000002981) MRC2 (ENSPNAG00000002977) tlk2 (ENSPNAG00000013857) itgb3a (ENSPNAG00000013832) rprml (ENSPNAG00000002931) ENSPNAG00000013757 tcap (ENSPNAG00000013730) Channel catfish MODERN SPECIES 11 ENSIPUG00000001371 Cdipt (ENSIPUG00000001351) Maz (ENSIPUG00000001307) nlk.2 (ENSIPUG00000001284) fam57b (ENSIPUG00000001260) ENSIPUG00000001253 ENSIPUG00000001250 rundc3a (ENSIPUG00000001220) FAM117A (ENSIPUG00000001205) slc35b1 (ENSIPUG00000001169) ndufa4a (ENSIPUG00000024420) ENSIPUG00000024418 spop (ENSIPUG00000024416) nxph3 (ENSIPUG00000024402) ngfr (ENSIPUG00000024356) #19 selenow2a (ENSIPUG00000024355) #22 slc4a1 (ENSIPUG00000024349) #23 UBTF (ENSIPUG00000024337) #24 atxn7l3a (ENSIPUG00000024323) #26 Tmub2 (ENSIPUG00000024321) #27 ENSIPUG00000024319 asb16 (ENSIPUG00000024318) #28 ENSIPUG00000024315 ENSIPUG00000024313 vat1 (ENSIPUG00000024311) Rnd2 (ENSIPUG00000024310) mrc2 (ENSIPUG00000024194) tlk2 (ENSIPUG00000024193) mettl2a (ENSIPUG00000024192) ENSIPUG00000024191 itgb3a (ENSIPUG00000024190) Cyprinoidei ANCESTRAL SPECIES 65 ENSGT00940000163160.b.d.a.a ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #19 ENSGT00390000010440.g.a #22 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #26 ENSGT00390000014069.b #27 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000163160.b.d.b Cyprininae ANCESTRAL SPECIES 269 ENSGT00990000204783.d ENSGT00960000187164.d ENSGT00940000158922.d.d ENSGT00950000183046.a.b.l.a ENSGT00940000157900.p ENSGT00940000154268.k.a.c.a ENSGT00940000154376.a.a.b ENSGT00950000182883.a.a.a.d ENSGT00730000110974.a.d #19 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.c #23 ENSGT00940000166349.n #24 ENSGT00940000158253.db.a #26 ENSGT00390000014069.b.l #27 ENSGT00940000154578.A.c.b.d.l ENSGT00940000157579.a.c ENSGT00940000157020.g.a.d ENSGT01050000244842.a.b.b.b.j ENSGT00950000182984.b.a.a.c.a.d ENSGT01090000259987.b.b.a.a.a.a.d ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g ENSGT00940000160492.b ENSGT00940000159252.b.b.d Cyprininae_a ANCESTRAL SPECIES 113 ENSGT00940000158922.d.d ENSGT00950000183046.a.b.l.a ENSGT00940000157900.p ENSGT00940000154268.k.a.c.a ENSGT00940000154376.a.a.b ENSGT00950000182883.a.a.a.d ENSGT00730000110974.a.d #19 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.c #23 ENSGT00940000166349.n #24 ENSGT00940000158253.db.a #26 ENSGT00390000014069.b.l #27 ENSGT00940000160773.h #28 ENSGT00940000154578.A.c.b.d.l ENSGT00940000157579.a.c ENSGT00940000157020.g.a.d ENSGT01050000244842.a.b.b.b.j ENSGT00950000182984.b.a.a.c.a.d ENSGT00940000156059.o ENSGT01090000259987.b.b.a.a.a.a.c.b ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g Common carp reference DUPLICATION Common carp reference MODERN SPECIES 3 ENSCCRG00000078937 ENSCCRG00000040560 tcap (ENSCCRG00000076036) zgc:123295 (ENSCCRG00000028123) ENSCCRG00000037739 ENSCCRG00000056548 nlk1 (ENSCCRG00000039894) tlcd3ba (ENSCCRG00000062094) ENSCCRG00000049848 FAM117A (ENSCCRG00000070826) slc35b1 (ENSCCRG00000049949) ndufa4a (ENSCCRG00000050500) spop (ENSCCRG00000011772) NXPH3 (ENSCCRG00000037538) NGFR (ENSCCRG00000011220) #19 selenow2a (ENSCCRG00000067963) #22 slc4a1a (ENSCCRG00000077482) #23 ubtf (ENSCCRG00000008775) #24 atxn7l3a (ENSCCRG00000008754) #26 tmub2 (ENSCCRG00000080193) #27 asb16 (ENSCCRG00000008740) #28 ENSCCRG00000061047 vat1 (ENSCCRG00000066633) rnd2 (ENSCCRG00000024725) MRC2 (ENSCCRG00000011390) tlk2 (ENSCCRG00000066124) mettl2a (ENSCCRG00000008201) itgb3a (ENSCCRG00000049656) rprml (ENSCCRG00000058144) hirip3 (ENSCCRG00000051117) kctd13 (ENSCCRG00000051112) Common carp reference MODERN SPECIES 1 ENSCCRG00000072003 tcap (ENSCCRG00000058197) zgc:123295 (ENSCCRG00000053214) zgc:112038 (ENSCCRG00000037376) zgc:123295 (ENSCCRG00000075360) ENSCCRG00000029846 ENSCCRG00000058911 nlk1 (ENSCCRG00000029985) ENSCCRG00000039928 FAM117A (ENSCCRG00000039941) slc35b1 (ENSCCRG00000039955) ndufa4a (ENSCCRG00000064261) spop (ENSCCRG00000070256) NXPH3 (ENSCCRG00000061205) NGFR (ENSCCRG00000008669) #19 selenow2a (ENSCCRG00000082469) #22 selenow2b (ENSCCRG00000065161) ##22 slc4a1a (ENSCCRG00000010545) #23 ubtf (ENSCCRG00000015544) #24 atxn7l3a (ENSCCRG00000017230) #26 tmub2 (ENSCCRG00000008660) #27 asb16 (ENSCCRG00000017234) #28 ENSCCRG00000017238 vat1 (ENSCCRG00000058207) ENSCCRG00000065467 rnd2 (ENSCCRG00000077623) ENSCCRG00000032612 mettl2a (ENSCCRG00000010206) itgb3a (ENSCCRG00000006571) rprml (ENSCCRG00000061133) hirip3 (ENSCCRG00000051794) Goldfish MODERN SPECIES 20 ENSCARG00000014184 cdipt (ENSCARG00000014413) ENSCARG00000014426 nlk1 (ENSCARG00000014437) tlcd3ba (ENSCARG00000014509) RUNDC3A (ENSCARG00000014516) ENSCARG00000014535 ENSCARG00000014537 FAM117A (ENSCARG00000014543) slc35b1 (ENSCARG00000014573) ndufa4a (ENSCARG00000015466) spop (ENSCARG00000015476) NXPH3 (ENSCARG00000015485) ENSCARG00000015486 NGFR (ENSCARG00000015495) #19 selenow2a (ENSCARG00000015514) #22 selenow2b (ENSCARG00000015527) ##22 slc4a1a (ENSCARG00000015560) #23 ubtf (ENSCARG00000015828) #24 atxn7l3a (ENSCARG00000015976) #26 tmub2 (ENSCARG00000016031) #27 asb16 (ENSCARG00000016042) #28 ENSCARG00000016050 vat1 (ENSCARG00000016057) rnd2 (ENSCARG00000016068) ENSCARG00000016088 MRC2 (ENSCARG00000016205) tlk2 (ENSCARG00000019314) mettl2a (ENSCARG00000020135) itgb3a (ENSCARG00000020529) rprml (ENSCARG00000023497) Zebrafish MODERN SPECIES 18 zgc:153968 (ENSDARG00000061858) zgc:112038 (ENSDARG00000046140) zgc:123295 (ENSDARG00000056324) ENSDARG00000074899 cdipt (ENSDARG00000070686) ENSDARG00000087330 nlk1 (ENSDARG00000006566) tlcd3ba (ENSDARG00000026875) RUNDC3A (ENSDARG00000007245) FAM117A (ENSDARG00000078640) slc35b1 (ENSDARG00000038213) ndufa4a (ENSDARG00000099499) spop (ENSDARG00000100519) NXPH3 (ENSDARG00000070694) NGFR (ENSDARG00000088708) #19 selenow2a (ENSDARG00000038228) #22 selenow2b (ENSDARG00000089936) ##22 slc4a1a (ENSDARG00000012881) #23 ubtf (ENSDARG00000035066) #24 atxn7l3a (ENSDARG00000029331) #26 tmub2 (ENSDARG00000056467) #27 asb16 (ENSDARG00000056468) #28 vat1 (ENSDARG00000056481) rnd2 (ENSDARG00000070735) MRC2 (ENSDARG00000078135) tlk2 (ENSDARG00000010779) mettl2a (ENSDARG00000008105) itgb3a (ENSDARG00000056767) rprml (ENSDARG00000056768) zgc:163079 (ENSDARG00000056773) ENSDARG00000101956