Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 60 ENSGT00940000165921 ENSGT00940000159539 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00390000010440.h ##22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 Otomorpha ANCESTRAL SPECIES 36 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d #14 ENSGT00990000204783 #12 ENSGT00940000177150 ENSGT00960000187164 #13 ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Otophysi ANCESTRAL SPECIES 46 ENSGT00390000014062 ENSGT00940000154169.A.h #8 ENSGT00940000158525.u #9 ENSGT00940000165613 #10 ENSGT01010000222313.A.b.b.a.a.b.a #11 ENSGT00990000204783 #12 ENSGT00940000177150 ENSGT00960000187164 #13 ENSGT00940000158922.d #14 ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d #29 ENSGT00940000157579.a #31 ENSGT00940000157020.g.a #32 ENSGT01050000244842.a.b.b.b #33 ENSGT00950000182984.b.a.a.c.a #34 ENSGT00940000156059 #35 ENSGT01090000259987.b.b.a.a.a.a #37 ENSGT00390000010523.c.a Characiphysae ANCESTRAL SPECIES 11 ENSGT00940000159991.A.a ENSGT00940000154169.A.h #8 ENSGT00940000158525.u #9 ENSGT00940000165613 #10 ENSGT01010000222313.A.b.b.a.a.b.a #11 ENSGT00990000204783 #12 ENSGT00940000177150 ENSGT00960000187164 #13 ENSGT00940000158922.d #14 ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b #30 ENSGT00940000157579.a #31 ENSGT00940000157020.g.a #32 ENSGT01050000244842.a.b.b.b #33 ENSGT00950000182984.b.a.a.c.a #34 ENSGT00940000156059 #35 ENSGT01090000259987.b.b.a.a.a.a #37 ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Channel catfish MODERN SPECIES 11 ENSIPUG00000001371 #7 Cdipt (ENSIPUG00000001351) #8 Maz (ENSIPUG00000001307) #9 nlk.2 (ENSIPUG00000001284) #10 fam57b (ENSIPUG00000001260) #11 ENSIPUG00000001253 #12 ENSIPUG00000001250 #13 rundc3a (ENSIPUG00000001220) #14 FAM117A (ENSIPUG00000001205) #15 slc35b1 (ENSIPUG00000001169) #16 ndufa4a (ENSIPUG00000024420) #17 ENSIPUG00000024418 #18 spop (ENSIPUG00000024416) #19 nxph3 (ENSIPUG00000024402) #20 ngfr (ENSIPUG00000024356) #21 selenow2a (ENSIPUG00000024355) #22 slc4a1 (ENSIPUG00000024349) #23 UBTF (ENSIPUG00000024337) #24 atxn7l3a (ENSIPUG00000024323) #25 Tmub2 (ENSIPUG00000024321) #26 ENSIPUG00000024319 #27 asb16 (ENSIPUG00000024318) #28 ENSIPUG00000024315 #29 ENSIPUG00000024313 #30 vat1 (ENSIPUG00000024311) #31 Rnd2 (ENSIPUG00000024310) #32 mrc2 (ENSIPUG00000024194) #33 tlk2 (ENSIPUG00000024193) #34 mettl2a (ENSIPUG00000024192) #35 ENSIPUG00000024191 #36 itgb3a (ENSIPUG00000024190) #37 Characiphysae_b ANCESTRAL SPECIES 30 ENSGT00940000159991.A.a ENSGT00940000154169.A.h #8 ENSGT00940000158525.u #9 ENSGT00940000165613 #10 ENSGT01010000222313.A.b.b.a.a.b.a #11 ENSGT00990000204783 #12 ENSGT00940000177150 ENSGT00960000187164 #13 ENSGT00940000158922.d #14 ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b #30 ENSGT00940000157579.a #31 ENSGT00940000157020.g.a #32 ENSGT01050000244842.a.b.b.b #33 ENSGT00950000182984.b.a.a.c.a #34 ENSGT00940000156059 #35 ENSGT01090000259987.b.b.a.a.a.a #37 ENSGT00390000010523.c.a ENSGT00940000168169 Characoidei ANCESTRAL SPECIES 25 ENSGT00940000159991.A.a ENSGT00940000154169.A.h #8 ENSGT00940000158525.u #9 ENSGT00940000165613 #10 ENSGT01010000222313.A.b.b.a.a.b.a #11 ENSGT00990000204783 #12 ENSGT00940000177150 ENSGT00960000187164 #13 ENSGT00940000158922.d #14 ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT01090000260029.a.a.b.a.b #30 ENSGT00940000157579.a #31 ENSGT00940000157020.g.a #32 ENSGT01050000244842.a.b.b.b #33 ENSGT00950000182984.b.a.a.c.a #34 ENSGT00940000156059 #35 ENSGT01090000259987.b.b.a.a.a.a #37 ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Mexicana tetra MODERN SPECIES 45 slc35b1 (ENSAMXG00000032034) #16 ndufa4a (ENSAMXG00000002982) #17 spop (ENSAMXG00000003082) #19 NXPH3 (ENSAMXG00000041514) #20 NGFR (ENSAMXG00000040581) #21 selenow2a (ENSAMXG00000033118) #22 ENSAMXG00000030771 slc4a1a (ENSAMXG00000015300) #23 ubtf (ENSAMXG00000035871) #24 atxn7l3a (ENSAMXG00000038051) #25 tmub2 (ENSAMXG00000043336) #26 asb16 (ENSAMXG00000015407) #28 ENSAMXG00000032402 #29 vat1 (ENSAMXG00000036949) #31 ENSAMXG00000036024 rnd2 (ENSAMXG00000031503) #32 MRC2 (ENSAMXG00000010776) #33 tlk2 (ENSAMXG00000041307) #34 mettl2a (ENSAMXG00000015090) #35 itgb3a (ENSAMXG00000015136) #37 ENSAMXG00000040234 Red-bellied piranha MODERN SPECIES 12 sgf29 (ENSPNAG00000014651) nfatc2ip (ENSPNAG00000014624) spns1 (ENSPNAG00000003183) atxn2l (ENSPNAG00000014538) RUNDC3A (ENSPNAG00000003123) #14 ENSPNAG00000003106 #12 ENSPNAG00000003101 ENSPNAG00000003099 #13 FAM117A (ENSPNAG00000014371) #15 slc35b1 (ENSPNAG00000014346) #16 ndufa4a (ENSPNAG00000014314) #17 spop (ENSPNAG00000014291) #19 NXPH3 (ENSPNAG00000003045) #20 NGFR (ENSPNAG00000014190) #21 ENSPNAG00000003042 selenow2a (ENSPNAG00000014155) #22 slc4a1a (ENSPNAG00000014118) #23 ubtf (ENSPNAG00000013986) #24 atxn7l3a (ENSPNAG00000013956) #25 tmub2 (ENSPNAG00000002993) #26 asb16 (ENSPNAG00000013926) #28 ENSPNAG00000002988 #29 ENSPNAG00000002987 #30 vat1 (ENSPNAG00000013902) #31 rnd2 (ENSPNAG00000002981) #32 MRC2 (ENSPNAG00000002977) #33 tlk2 (ENSPNAG00000013857) #34 itgb3a (ENSPNAG00000013832) #37 rprml (ENSPNAG00000002931) ENSPNAG00000013757 tcap (ENSPNAG00000013730) Cyprinoidei ANCESTRAL SPECIES 65 ENSGT00940000163160.b.d.a.a #7 ENSGT00940000159991.A.a ENSGT00940000154169.A.h #8 ENSGT00940000158525.u #9 ENSGT00940000165613 #10 ENSGT01010000222313.A.b.b.a.a.b.a #11 ENSGT00990000204783 #12 ENSGT00960000187164 #13 ENSGT00940000158922.d #14 ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00940000154578.A.c.b.d #29 ENSGT00940000157579.a #31 ENSGT00940000157020.g.a #32 ENSGT01050000244842.a.b.b.b #33 ENSGT00950000182984.b.a.a.c.a #34 ENSGT00940000156059 #35 ENSGT01090000259987.b.b.a.a.a.a #37 ENSGT00390000010523.c.a ENSGT00940000163160.b.d.b #7 Cyprininae ANCESTRAL SPECIES 269 ENSGT00990000204783.d #12 ENSGT00960000187164.d #13 ENSGT00940000158922.d.d #14 ENSGT00950000183046.a.b.l.a #15 ENSGT00940000157900.p #16 ENSGT00940000154268.k.a.c.a #17 ENSGT00940000154376.a.a.b #19 ENSGT00950000182883.a.a.a.d #20 ENSGT00730000110974.a.d #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.c #23 ENSGT00940000166349.n #24 ENSGT00940000158253.db.a #25 ENSGT00390000014069.b.l #26 ENSGT00940000154578.A.c.b.d.l #29 ENSGT00940000157579.a.c #31 ENSGT00940000157020.g.a.d #32 ENSGT01050000244842.a.b.b.b.j #33 ENSGT00950000182984.b.a.a.c.a.d #34 ENSGT01090000259987.b.b.a.a.a.a.d #37 ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g ENSGT00940000160492.b ENSGT00940000159252.b.b.d Cyprininae_a ANCESTRAL SPECIES 113 ENSGT00940000158922.d.d #14 ENSGT00950000183046.a.b.l.a #15 ENSGT00940000157900.p #16 ENSGT00940000154268.k.a.c.a #17 ENSGT00940000154376.a.a.b #19 ENSGT00950000182883.a.a.a.d #20 ENSGT00730000110974.a.d #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.c #23 ENSGT00940000166349.n #24 ENSGT00940000158253.db.a #25 ENSGT00390000014069.b.l #26 ENSGT00940000160773.h #28 ENSGT00940000154578.A.c.b.d.l #29 ENSGT00940000157579.a.c #31 ENSGT00940000157020.g.a.d #32 ENSGT01050000244842.a.b.b.b.j #33 ENSGT00950000182984.b.a.a.c.a.d #34 ENSGT00940000156059.o #35 ENSGT01090000259987.b.b.a.a.a.a.c.b #37 ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g Common carp reference DUPLICATION Common carp reference MODERN SPECIES 3 ENSCCRG00000078937 ENSCCRG00000040560 tcap (ENSCCRG00000076036) zgc:123295 (ENSCCRG00000028123) #7 ENSCCRG00000037739 ENSCCRG00000056548 #9 nlk1 (ENSCCRG00000039894) #10 tlcd3ba (ENSCCRG00000062094) #11 ENSCCRG00000049848 #14 FAM117A (ENSCCRG00000070826) #15 slc35b1 (ENSCCRG00000049949) #16 ndufa4a (ENSCCRG00000050500) #17 spop (ENSCCRG00000011772) #19 NXPH3 (ENSCCRG00000037538) #20 NGFR (ENSCCRG00000011220) #21 selenow2a (ENSCCRG00000067963) #22 slc4a1a (ENSCCRG00000077482) #23 ubtf (ENSCCRG00000008775) #24 atxn7l3a (ENSCCRG00000008754) #25 tmub2 (ENSCCRG00000080193) #26 asb16 (ENSCCRG00000008740) #28 ENSCCRG00000061047 #29 vat1 (ENSCCRG00000066633) #31 rnd2 (ENSCCRG00000024725) #32 MRC2 (ENSCCRG00000011390) #33 tlk2 (ENSCCRG00000066124) #34 mettl2a (ENSCCRG00000008201) #35 itgb3a (ENSCCRG00000049656) #37 rprml (ENSCCRG00000058144) hirip3 (ENSCCRG00000051117) kctd13 (ENSCCRG00000051112) Common carp reference MODERN SPECIES 1 ENSCCRG00000072003 tcap (ENSCCRG00000058197) zgc:123295 (ENSCCRG00000053214) #7 zgc:112038 (ENSCCRG00000037376) #7 zgc:123295 (ENSCCRG00000075360) #7 ENSCCRG00000029846 ENSCCRG00000058911 #9 nlk1 (ENSCCRG00000029985) #10 ENSCCRG00000039928 #14 FAM117A (ENSCCRG00000039941) #15 slc35b1 (ENSCCRG00000039955) #16 ndufa4a (ENSCCRG00000064261) #17 spop (ENSCCRG00000070256) #19 NXPH3 (ENSCCRG00000061205) #20 NGFR (ENSCCRG00000008669) #21 selenow2a (ENSCCRG00000082469) #22 selenow2b (ENSCCRG00000065161) ##22 slc4a1a (ENSCCRG00000010545) #23 ubtf (ENSCCRG00000015544) #24 atxn7l3a (ENSCCRG00000017230) #25 tmub2 (ENSCCRG00000008660) #26 asb16 (ENSCCRG00000017234) #28 ENSCCRG00000017238 #29 vat1 (ENSCCRG00000058207) #31 ENSCCRG00000065467 #34 rnd2 (ENSCCRG00000077623) #32 ENSCCRG00000032612 #33 mettl2a (ENSCCRG00000010206) #35 itgb3a (ENSCCRG00000006571) #37 rprml (ENSCCRG00000061133) hirip3 (ENSCCRG00000051794) Goldfish MODERN SPECIES 20 ENSCARG00000014184 cdipt (ENSCARG00000014413) #8 ENSCARG00000014426 #9 nlk1 (ENSCARG00000014437) #10 tlcd3ba (ENSCARG00000014509) #11 RUNDC3A (ENSCARG00000014516) #14 ENSCARG00000014535 #12 ENSCARG00000014537 #13 FAM117A (ENSCARG00000014543) #15 slc35b1 (ENSCARG00000014573) #16 ndufa4a (ENSCARG00000015466) #17 spop (ENSCARG00000015476) #19 NXPH3 (ENSCARG00000015485) #20 ENSCARG00000015486 NGFR (ENSCARG00000015495) #21 selenow2a (ENSCARG00000015514) #22 selenow2b (ENSCARG00000015527) ##22 slc4a1a (ENSCARG00000015560) #23 ubtf (ENSCARG00000015828) #24 atxn7l3a (ENSCARG00000015976) #25 tmub2 (ENSCARG00000016031) #26 asb16 (ENSCARG00000016042) #28 ENSCARG00000016050 #29 vat1 (ENSCARG00000016057) #31 rnd2 (ENSCARG00000016068) #32 ENSCARG00000016088 MRC2 (ENSCARG00000016205) #33 tlk2 (ENSCARG00000019314) #34 mettl2a (ENSCARG00000020135) #35 itgb3a (ENSCARG00000020529) #37 rprml (ENSCARG00000023497) Zebrafish MODERN SPECIES 18 zgc:153968 (ENSDARG00000061858) #7 zgc:112038 (ENSDARG00000046140) #7 zgc:123295 (ENSDARG00000056324) #7 ENSDARG00000074899 cdipt (ENSDARG00000070686) #8 ENSDARG00000087330 #9 nlk1 (ENSDARG00000006566) #10 tlcd3ba (ENSDARG00000026875) #11 RUNDC3A (ENSDARG00000007245) #14 FAM117A (ENSDARG00000078640) #15 slc35b1 (ENSDARG00000038213) #16 ndufa4a (ENSDARG00000099499) #17 spop (ENSDARG00000100519) #19 NXPH3 (ENSDARG00000070694) #20 NGFR (ENSDARG00000088708) #21 selenow2a (ENSDARG00000038228) #22 selenow2b (ENSDARG00000089936) ##22 slc4a1a (ENSDARG00000012881) #23 ubtf (ENSDARG00000035066) #24 atxn7l3a (ENSDARG00000029331) #25 tmub2 (ENSDARG00000056467) #26 asb16 (ENSDARG00000056468) #28 vat1 (ENSDARG00000056481) #31 rnd2 (ENSDARG00000070735) #32 MRC2 (ENSDARG00000078135) #33 tlk2 (ENSDARG00000010779) #34 mettl2a (ENSDARG00000008105) #35 itgb3a (ENSDARG00000056767) #37 rprml (ENSDARG00000056768) zgc:163079 (ENSDARG00000056773) #7 ENSDARG00000101956 #7 Clupeiformes ANCESTRAL SPECIES 155 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d #14 ENSGT00990000204783 #12 ENSGT00940000177150 ENSGT00960000187164 #13 ENSGT00950000183046.a.b.l.d #15 ENSGT00940000157900 #16 ENSGT00940000154268.k.a #17 ENSGT00940000154268.l ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253.t.b #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.e.a ENSGT00390000012062 ENSGT00940000166828 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 17 DDX39A (ENSDCDG00000014300) ENSDCDG00000014350 ENSDCDG00000014679 txn2 (ENSDCDG00000014684) PMM1 (ENSDCDG00000014692) CSDC2 (ENSDCDG00000014701) polr3h (ENSDCDG00000014710) aco2 (ENSDCDG00000014738) TOB2 (ENSDCDG00000014782) tefb (ENSDCDG00000014799) ZC3H7B (ENSDCDG00000014806) ENSDCDG00000014808 rbx1 (ENSDCDG00000014818) st13 (ENSDCDG00000014821) NGFR (ENSDCDG00000014824) #21 selenow2a (ENSDCDG00000014831) #22 ENSDCDG00000014832 slc4a1a (ENSDCDG00000014856) #23 ubtf (ENSDCDG00000015891) #24 ENSDCDG00000016063 #25 ENSDCDG00000016069 ENSDCDG00000016071 MCOLN1 (ENSDCDG00000016088) ENSDCDG00000016271 pkn1b (ENSDCDG00000016321) ENSDCDG00000020239 ENSDCDG00000020243 LRRC8E (ENSDCDG00000020248) DDX39A (ENSDCDG00000020253) ENSDCDG00000020274 txn2 (ENSDCDG00000020323) Denticle herring MODERN SPECIES 17 ENSDCDG00000004824 limd2 (ENSDCDG00000004827) ddx42 (ENSDCDG00000004861) rnf113a (ENSDCDG00000004923) RUNDC3A (ENSDCDG00000004935) #14 ENSDCDG00000004970 #12 ENSDCDG00000004971 ENSDCDG00000004972 #13 ENSDCDG00000004973 #15 slc35b1 (ENSDCDG00000004974) #16 ndufa4a (ENSDCDG00000004976) #17 spop (ENSDCDG00000004979) #19 NXPH3 (ENSDCDG00000004980) #20 NXPH3 (ENSDCDG00000004981) #20 NGFR (ENSDCDG00000004984) #21 selenow2a (ENSDCDG00000004988) #22 ENSDCDG00000004992 slc4a1a (ENSDCDG00000004996) #23 ubtf (ENSDCDG00000005186) #24 ENSDCDG00000005213 ENSDCDG00000005216 MCOLN1 (ENSDCDG00000005225) ENSDCDG00000005316 pkn1b (ENSDCDG00000005321) ENSDCDG00000005425 ENSDCDG00000013934 LRRC8E (ENSDCDG00000013968) DDX39A (ENSDCDG00000014300) ENSDCDG00000014350 ENSDCDG00000014679 txn2 (ENSDCDG00000014684) Atlantic herring MODERN SPECIES slc35b1 (ENSCHAG00000008733) #16 FAM117A (ENSCHAG00000009073) #15 RUNDC3A (ENSCHAG00000009114) #14 ENSCHAG00000009129 ENSCHAG00000009140 ENSCHAG00000009169 #12 rnf113a (ENSCHAG00000009175) strada (ENSCHAG00000009246) ddx42 (ENSCHAG00000009427) limd2 (ENSCHAG00000009547) MAP3K3 (ENSCHAG00000009572) gfap (ENSCHAG00000010212) kcnh6a (ENSCHAG00000010459) dcaf7 (ENSCHAG00000010570) ccdc47 (ENSCHAG00000010602) selenow2a (ENSCHAG00000010747) #22 slc4a1a (ENSCHAG00000010815) #23 ubtf (ENSCHAG00000012302) #24 atxn7l3a (ENSCHAG00000012748) #25 asb16 (ENSCHAG00000012893) #28 ENSCHAG00000012905 ENSCHAG00000012911 asic2 (ENSCHAG00000012932) MPP3 (ENSCHAG00000013278) ENSCHAG00000013943 ENSCHAG00000013971 ENSCHAG00000013987 ENSCHAG00000014004 ENSCHAG00000014020 tmem98 (ENSCHAG00000014052) ENSCHAG00000014087 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00390000010440.g.a #22 Protacanthopterygii ANCESTRAL SPECIES 8 ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01090000260346 ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.l ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00390000001488 ENSGT00980000199397 ENSGT00390000004692.d.a.n ENSGT00940000163111.a.a ENSGT00530000063936.a.b ENSGT00950000182886.a.a.b.t ENSGT00940000164566.b Salmoninae ANCESTRAL SPECIES ENSGT00390000016292.d ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT01090000260346.b.b ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l #15 ENSGT00940000157900.m #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b ENSGT00940000163111.a.a ENSGT00530000063936.a.b Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h #15 ENSGT00940000157900.m #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a.i #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b ENSGT00940000154394.b.a.a.b.a.b.c.b.a ENSGT00980000199397.a.b Oncorhynchus ANCESTRAL SPECIES 162 ENSGT00730000110974.a.j #21 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #24 ENSGT00940000158253.yc.a #25 ENSGT00390000014069.b.e #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000154991.a.a.f ENSGT00940000158693.A.f Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 3 limd2 (ENSOMYG00000006198) ddx42 (ENSOMYG00000006634) rnf113a (ENSOMYG00000007366) strada (ENSOMYG00000007099) ENSOMYG00000007417 #14 ENSOMYG00000007446 ENSOMYG00000007469 ENSOMYG00000007481 ENSOMYG00000007511 slc35b1 (ENSOMYG00000007708) #16 ENSOMYG00000065517 ##17 spop (ENSOMYG00000007883) #19 NXPH3 (ENSOMYG00000007928) #20 NGFR (ENSOMYG00000007962) #21 ENSOMYG00000008010 ##22 selenow2a (ENSOMYG00000069176) #22 slc4a1a (ENSOMYG00000008303) #23 ubtf (ENSOMYG00000008651) #24 atxn7l3a (ENSOMYG00000008839) #25 tmub2 (ENSOMYG00000054590) #26 asb16 (ENSOMYG00000008866) #28 ENSOMYG00000008901 ENSOMYG00000075912 ENSOMYG00000071360 ENSOMYG00000009033 ENSOMYG00000009127 ENSOMYG00000009362 ENSOMYG00000009543 ENSOMYG00000058131 ENSOMYG00000072635 ENSOMYG00000066848 Rainbow trout MODERN SPECIES 4 ENSOMYG00000005959 #14 ENSOMYG00000006091 ENSOMYG00000006102 ENSOMYG00000006123 FAM117A (ENSOMYG00000006145) #15 slc35b1 (ENSOMYG00000006195) #16 ndua4 (ENSOMYG00000007771) ##17 spop (ENSOMYG00000006388) #19 ENSOMYG00000057878 NXPH3 (ENSOMYG00000006479) #20 ENSOMYG00000077469 NGFR (ENSOMYG00000006619) #21 ENSOMYG00000070398 ENSOMYG00000006655 ENSOMYG00000051649 ##22 selenow2a (ENSOMYG00000006692) #22 slc4a1a (ENSOMYG00000006966) #23 ubtf (ENSOMYG00000007387) #24 atxn7l3a (ENSOMYG00000007563) #25 tmub2 (ENSOMYG00000007616) #26 asb16 (ENSOMYG00000007634) #28 ENSOMYG00000007658 ENSOMYG00000065520 ENSOMYG00000007815 ENSOMYG00000008272 ENSOMYG00000008416 ENSOMYG00000017359 ENSOMYG00000065234 ENSOMYG00000077206 asf1ba (ENSOMYG00000008551) prkacaa (ENSOMYG00000009245) Oncorhynchus_a ANCESTRAL SPECIES 243 ENSGT00730000110974.a.i.a #21 ENSGT00940000162556.G.d.h.b.a ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #24 ENSGT00940000158253.yc.a #25 ENSGT00390000014069.b.e #26 ENSGT00940000160773.f.a #28 Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 239 NGFR (ENSOTSG00005038244) #21 ENSOTSG00005038246 MIEN1 (ENSOTSG00005038248) ##22 selenow2a (ENSOTSG00005038251) #22 slc4a1a (ENSOTSG00005038255) #23 ubtf (ENSOTSG00005038330) #24 ENSOTSG00005039831 atxn7l3a (ENSOTSG00005039833) #25 tmub2 (ENSOTSG00005039838) #26 asb16 (ENSOTSG00005039841) #28 ENSOTSG00005039842 ENSOTSG00005039843 Chinook salmon MODERN SPECIES 85 NGFR (ENSOTSG00005037616) #21 ENSOTSG00005037619 MIEN1 (ENSOTSG00005037621) ##22 selenow2a (ENSOTSG00005037623) #22 slc4a1a (ENSOTSG00005037627) #23 ubtf (ENSOTSG00005037680) #24 atxn7l3a (ENSOTSG00005037752) #25 tmub2 (ENSOTSG00005037753) #26 asb16 (ENSOTSG00005037754) #28 ENSOTSG00005037755 ENSOTSG00005037756 Coho salmon MODERN SPECIES 26 strada (ENSOKIG00005032199) rnf113a (ENSOKIG00005033056) RUNDC3A (ENSOKIG00005033098) #14 ENSOKIG00005033537 ENSOKIG00005033543 ENSOKIG00005033550 FAM117A (ENSOKIG00005033565) #15 slc35b1 (ENSOKIG00005033631) #16 ENSOKIG00005033755 ##17 spop (ENSOKIG00005033765) #19 NGFR (ENSOKIG00005033821) #21 ENSOKIG00005033847 ENSOKIG00005033854 ENSOKIG00005033869 MIEN1 (ENSOKIG00005033874) ##22 selenow2a (ENSOKIG00005033900) #22 slc4a1a (ENSOKIG00005033939) #23 ubtf (ENSOKIG00005034233) #24 ENSOKIG00005034716 atxn7l3a (ENSOKIG00005034724) #25 tmub2 (ENSOKIG00005034749) #26 asb16 (ENSOKIG00005034758) #28 ENSOKIG00005034763 ENSOKIG00005034772 ASIC2 (ENSOKIG00005034821) ENSOKIG00005035054 ENSOKIG00005035078 RRN3 (ENSOKIG00005035508) ENSOKIG00005035692 ENSOKIG00005035709 ENSOKIG00005035739 Salmo ANCESTRAL SPECIES 219 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.m #23 ENSGT00940000166349.g.a #24 ENSGT00940000158253.ad.a #25 ENSGT00390000014069.b.g #26 ENSGT00940000160773.e.a #28 ENSGT00400000022305.g.b ENSGT00940000154991.a.b ENSGT00400000022305.h ENSGT00940000154991.a.a.g ENSGT00940000158693.A.f ENSGT00390000001488.p Atlantic salmon MODERN SPECIES 22 gfap (ENSSSAG00000045892) ENSSSAG00000001385 ddx42 (ENSSSAG00000001177) ENSSSAG00000001102 rnf113a (ENSSSAG00000040392) ENSSSAG00000114487 #14 ENSSSAG00000001029 ENSSSAG00000001023 FAM117A (ENSSSAG00000001000) #15 s35b1 (ENSSSAG00000000988) #16 spop (ENSSSAG00000000960) #19 NXPH3 (ENSSSAG00000100957) #20 NGFR (ENSSSAG00000099650) #21 ENSSSAG00000121971 ENSSSAG00000102819 selenow2a (ENSSSAG00000091831) #22 slc4a1a (ENSSSAG00000001877) #23 ubtf (ENSSSAG00000047681) #24 atxn7l3a (ENSSSAG00000010897) #25 tmub2 (ENSSSAG00000092439) #26 asb16 (ENSSSAG00000003381) #28 ENSSSAG00000001752 ENSSSAG00000001986 ENSSSAG00000001964 ENSSSAG00000115856 ENSSSAG00000001933 ENSSSAG00000108890 ENSSSAG00000119563 ENSSSAG00000109863 ENSSSAG00000106784 prkacaa (ENSSSAG00000091909) River trout MODERN SPECIES 25 limd2 (ENSSTUG00000010876) ddx42 (ENSSTUG00000010932) strada (ENSSTUG00000010993) rnf113a (ENSSTUG00000011287) RUNDC3A (ENSSTUG00000011397) #14 ENSSTUG00000011469 ENSSTUG00000011472 ENSSTUG00000011481 FAM117A (ENSSTUG00000011495) #15 slc35b1 (ENSSTUG00000011509) #16 NDUFA4 (ENSSTUG00000011529) ##17 NXPH3 (ENSSTUG00000011547) #20 NGFR (ENSSTUG00000011551) #21 ENSSTUG00000011574 MIEN1 (ENSSTUG00000011587) ##22 selenow2a (ENSSTUG00000011618) #22 slc4a1a (ENSSTUG00000011652) #23 ENSSTUG00000011836 ubtf (ENSSTUG00000011856) #24 ENSSTUG00000012160 atxn7l3a (ENSSTUG00000012169) #25 tmub2 (ENSSTUG00000012226) #26 asb16 (ENSSTUG00000012239) #28 ENSSTUG00000012247 ENSSTUG00000012253 ENSSTUG00000012259 asic2 (ENSSTUG00000012265) trpm4a (ENSSTUG00000012285) RRN3 (ENSSTUG00000036705) ENSSTUG00000037293 ENSSTUG00000037298 Northern pike MODERN SPECIES 10 ddx42 (ENSELUG00000020593) strada (ENSELUG00000020637) rnf113a (ENSELUG00000020657) ENSELUG00000020665 ENSELUG00000020675 RUNDC3A (ENSELUG00000020709) #14 ENSELUG00000020723 #15 slc35b1 (ENSELUG00000020756) #16 ENSELUG00000020792 ##17 spop (ENSELUG00000021725) #19 NXPH3 (ENSELUG00000021845) #20 ENSELUG00000021850 NGFR (ENSELUG00000021915) #21 ENSELUG00000021930 MIEN1 (ENSELUG00000021956) ##22 selenow2a (ENSELUG00000021964) #22 slc4a1a (ENSELUG00000021990) #23 ubtf (ENSELUG00000022011) #24 atxn7l3a (ENSELUG00000022068) #25 tmub2 (ENSELUG00000022078) #26 asb16 (ENSELUG00000022103) #28 ENSELUG00000022131 ENSELUG00000022146 asic2 (ENSELUG00000022180) RRN3 (ENSELUG00000022239) ENSELUG00000022251 ENSELUG00000026953 ENSELUG00000031082 ENSELUG00000022300 ENSELUG00000032997 asf1ba (ENSELUG00000022338) Clupeocephala ANCESTRAL SPECIES ENSGT00390000010440.g.b ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00390000010440.g.b ##22 Protacanthopterygii ANCESTRAL SPECIES 8 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00980000200496 ENSGT01090000260346 ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l #15 ENSGT00940000157900 #16 ENSGT00940000154268.l ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773 #28 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00390000001488 ENSGT00980000199397 ENSGT00390000004692.d.a.n ENSGT00940000163111.a.a ENSGT00530000063936.a.b ENSGT00950000182886.a.a.b.t Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00390000010440.g.b.a.a ##22 Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00390000016292.d ENSGT00940000158767.g.a.a.b ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h #15 ENSGT00940000157900.m #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a.i #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b Oncorhynchus ANCESTRAL SPECIES 71 ENSGT00940000158827.cb ENSGT00390000016292.c.b ENSGT00940000158922.d.g.a #14 ENSGT00940000164651.b.b ENSGT00950000183046.a.b.l.h #15 ENSGT00940000157900.m #16 ENSGT00940000154268.l.b ##17 ENSGT00940000164651.b.a ENSGT00950000183046.a.b.l.g #15 ENSGT00940000157900.n #16 ENSGT00940000154268.l.a ##17 ENSGT00940000154376.a.a.g.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a.i #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.a.a ##22 ENSGT00940000177451 ENSGT00940000157423.a.a.o #23 ENSGT00940000166349.i.b #24 ENSGT00940000158253.yc.b #25 ENSGT00390000014069.b.f #26 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a ENSGT00940000154991.a.b.d ENSGT00940000154991.a.a.e.a ENSGT00390000001488 ENSGT00970000193390.c.b.b.b.a.u.b ENSGT00940000166524.g ENSGT00940000166551.c.a.b ENSGT00530000063679.B.k ENSGT00940000155764.A.a.e.d Rainbow trout MODERN SPECIES 4 rnf113a (ENSOMYG00000004364) ENSOMYG00000005959 #14 ENSOMYG00000006091 ENSOMYG00000006102 ENSOMYG00000006123 FAM117A (ENSOMYG00000006145) #15 slc35b1 (ENSOMYG00000006195) #16 ndua4 (ENSOMYG00000007771) ##17 spop (ENSOMYG00000006388) #19 ENSOMYG00000057878 NXPH3 (ENSOMYG00000006479) #20 ENSOMYG00000077469 NGFR (ENSOMYG00000006619) #21 ENSOMYG00000070398 ENSOMYG00000006655 ENSOMYG00000051649 ##22 selenow2a (ENSOMYG00000006692) #22 slc4a1a (ENSOMYG00000006966) #23 ubtf (ENSOMYG00000007387) #24 atxn7l3a (ENSOMYG00000007563) #25 tmub2 (ENSOMYG00000007616) #26 asb16 (ENSOMYG00000007634) #28 ENSOMYG00000007658 ENSOMYG00000065520 ENSOMYG00000007815 ENSOMYG00000008272 ENSOMYG00000008416 ENSOMYG00000017359 ENSOMYG00000065234 ENSOMYG00000077206 asf1ba (ENSOMYG00000008551) Oncorhynchus_a ANCESTRAL SPECIES 62 ENSGT00940000158377.a.c ENSGT00940000156559.o ENSGT00940000158827.cb ENSGT00390000016292.c.a.a ENSGT00980000200496.a ENSGT01090000260346.b.a.a.a ENSGT00940000158922.d.g.a #14 ENSGT00940000164651.b.b ENSGT00950000183046.a.b.l.g #15 ENSGT00940000157900.n.b #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a.g.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a.i.b #21 ENSGT00940000162556.G.d.h.b.b ENSGT00390000010440.g.b.a.a ##22 ENSGT00940000177451 ENSGT00940000157423.a.a.o #23 ENSGT00940000166349.i.b #24 ENSGT00940000158253.yc.b #25 ENSGT00390000014069.b.f #26 ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a.a ENSGT00940000154991.a.b.d ENSGT00940000154991.a.a.e.a ENSGT00940000154991.a.a.f ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00970000193390.c.b.b.a.m ENSGT00940000154394.b.a.a.b.a.b.d.a.a.b ENSGT00940000163111.a.a.h Chinook salmon MODERN SPECIES 85 NGFR (ENSOTSG00005037616) #21 ENSOTSG00005037619 MIEN1 (ENSOTSG00005037621) ##22 selenow2a (ENSOTSG00005037623) #22 slc4a1a (ENSOTSG00005037627) #23 ubtf (ENSOTSG00005037680) #24 atxn7l3a (ENSOTSG00005037752) #25 tmub2 (ENSOTSG00005037753) #26 asb16 (ENSOTSG00005037754) #28 ENSOTSG00005037755 ENSOTSG00005037756 Coho salmon MODERN SPECIES 1 ddx42 (ENSOKIG00005009092) strada (ENSOKIG00005009172) rnf113a (ENSOKIG00005009328) RUNDC3A (ENSOKIG00005009517) #14 ENSOKIG00005010175 ENSOKIG00005010180 ENSOKIG00005010190 #15 ENSOKIG00005010196 slc35b1 (ENSOKIG00005010217) #16 NDUFA4 (ENSOKIG00005010275) ##17 spop (ENSOKIG00005010306) #19 NXPH3 (ENSOKIG00005010350) #20 ENSOKIG00005010354 NGFR (ENSOKIG00005010367) #21 ENSOKIG00005010413 MIEN1 (ENSOKIG00005010420) ##22 ENSOKIG00005010436 slc4a1a (ENSOKIG00005010463) #23 ubtf (ENSOKIG00005031963) #24 atxn7l3a (ENSOKIG00005032153) #25 tmub2 (ENSOKIG00005032181) #26 asb16 (ENSOKIG00005032194) #28 ENSOKIG00005032219 ENSOKIG00005032227 ENSOKIG00005032232 ASIC2 (ENSOKIG00005032249) RRN3 (ENSOKIG00005032420) ENSOKIG00005032477 ENSOKIG00005032487 ENSOKIG00005032496 crb3a (ENSOKIG00005032512) Salmoninae ANCESTRAL SPECIES ENSGT00390000016292.c.b ENSGT00390000016292.d ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT01090000260346.b.b ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l #15 ENSGT00940000157900.m #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b ENSGT00940000163111.a.a Salmoninae_a ANCESTRAL SPECIES 37 ENSGT00940000158767.g.a.a.b ENSGT00940000158377.a.c ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00980000200496.b ENSGT00940000158922.d #14 ENSGT00940000164651.b ENSGT00950000183046.a.b.l.h #15 ENSGT00940000157900.m #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a #19 ENSGT00950000182883.a.a.a #20 ENSGT00730000110974.a.i #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.a.a ##22 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #23 ENSGT00940000166349 #24 ENSGT00940000158253 #25 ENSGT00390000014069.b #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000160773.f.b #28 ENSGT00400000022305.g.a ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000158693.A.f ENSGT00390000001488 ENSGT00940000154394.b.a.a.b.a.b.c.b.b.b ENSGT00940000154394.b.a.a.b.a.b.c.b.a Oncorhynchus ANCESTRAL SPECIES 162 ENSGT00730000110974.a.j #21 ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #24 ENSGT00940000158253.yc.a #25 ENSGT00390000014069.b.e #26 ENSGT00940000160773.f.a #28 ENSGT00400000022305.g.b ENSGT00940000154991.a.a.f ENSGT00940000158693.A.f Rainbow trout MODERN SPECIES 3 ENSOMYG00000005900 limd2 (ENSOMYG00000006198) ddx42 (ENSOMYG00000006634) rnf113a (ENSOMYG00000007366) strada (ENSOMYG00000007099) ENSOMYG00000007417 #14 ENSOMYG00000007446 ENSOMYG00000007469 ENSOMYG00000007481 ENSOMYG00000007511 slc35b1 (ENSOMYG00000007708) #16 ENSOMYG00000065517 ##17 spop (ENSOMYG00000007883) #19 NXPH3 (ENSOMYG00000007928) #20 NGFR (ENSOMYG00000007962) #21 ENSOMYG00000008010 ##22 selenow2a (ENSOMYG00000069176) #22 slc4a1a (ENSOMYG00000008303) #23 ubtf (ENSOMYG00000008651) #24 atxn7l3a (ENSOMYG00000008839) #25 tmub2 (ENSOMYG00000054590) #26 asb16 (ENSOMYG00000008866) #28 ENSOMYG00000008901 ENSOMYG00000075912 ENSOMYG00000071360 ENSOMYG00000009033 ENSOMYG00000009127 ENSOMYG00000009362 ENSOMYG00000009543 ENSOMYG00000058131 ENSOMYG00000072635 Oncorhynchus_a ANCESTRAL SPECIES 243 ENSGT00730000110974.a.i.a #21 ENSGT00940000162556.G.d.h.b.a ENSGT00390000010440.g.b.a.b ##22 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.p #23 ENSGT00940000166349.i.a #24 ENSGT00940000158253.yc.a #25 ENSGT00390000014069.b.e #26 ENSGT00940000160773.f.a #28 Coho salmon MODERN SPECIES 26 ddx42 (ENSOKIG00005032022) strada (ENSOKIG00005032199) rnf113a (ENSOKIG00005033056) RUNDC3A (ENSOKIG00005033098) #14 ENSOKIG00005033537 ENSOKIG00005033543 ENSOKIG00005033550 FAM117A (ENSOKIG00005033565) #15 slc35b1 (ENSOKIG00005033631) #16 ENSOKIG00005033755 ##17 spop (ENSOKIG00005033765) #19 NGFR (ENSOKIG00005033821) #21 ENSOKIG00005033847 ENSOKIG00005033854 ENSOKIG00005033869 MIEN1 (ENSOKIG00005033874) ##22 selenow2a (ENSOKIG00005033900) #22 slc4a1a (ENSOKIG00005033939) #23 ubtf (ENSOKIG00005034233) #24 ENSOKIG00005034716 atxn7l3a (ENSOKIG00005034724) #25 tmub2 (ENSOKIG00005034749) #26 asb16 (ENSOKIG00005034758) #28 ENSOKIG00005034763 ENSOKIG00005034772 ASIC2 (ENSOKIG00005034821) ENSOKIG00005035054 ENSOKIG00005035078 RRN3 (ENSOKIG00005035508) ENSOKIG00005035692 ENSOKIG00005035709 Chinook salmon MODERN SPECIES 239 NGFR (ENSOTSG00005038244) #21 ENSOTSG00005038246 MIEN1 (ENSOTSG00005038248) ##22 selenow2a (ENSOTSG00005038251) #22 slc4a1a (ENSOTSG00005038255) #23 ubtf (ENSOTSG00005038330) #24 ENSOTSG00005039831 atxn7l3a (ENSOTSG00005039833) #25 tmub2 (ENSOTSG00005039838) #26 asb16 (ENSOTSG00005039841) #28 ENSOTSG00005039842 ENSOTSG00005039843 Huchen MODERN SPECIES 126 plscr3b (ENSHHUG00000041882) plscr3b (ENSHHUG00000041831) tnk1 (ENSHHUG00000041820) trmt44 (ENSHHUG00000041799) GPR78 (ENSHHUG00000041782) CPZ (ENSHHUG00000041763) ENSHHUG00000041759 HMX1 (ENSHHUG00000041758) ADRA2C (ENSHHUG00000041745) ENSHHUG00000041739 ENSHHUG00000041733 DOK7 (ENSHHUG00000041707) HGFAC (ENSHHUG00000041687) NGFR (ENSHHUG00000041680) #21 ENSHHUG00000041675 MIEN1 (ENSHHUG00000041669) ##22 slc4a1a (ENSHHUG00000040720) #23 ubtf (ENSHHUG00000040714) #24 atxn7l3a (ENSHHUG00000040702) #25 tmub2 (ENSHHUG00000040700) #26 ENSHHUG00000040698 #28 ENSHHUG00000040686 Salmoninae ANCESTRAL SPECIES 2063 ENSGT00390000010440.g.b.b ##22 ENSGT00940000177451 Salmoninae_a ANCESTRAL SPECIES 940 ENSGT00390000010440.g.b.b ##22 ENSGT00940000177451 Salmo ANCESTRAL SPECIES 111 ENSGT00390000013997.o.a ENSGT00940000159539.o ENSGT00940000158767.g.b ENSGT00940000158377.a.c ENSGT00940000156559.n ENSGT00940000158827.bb ENSGT00390000016292.c.a ENSGT00940000158922.d.f #14 ENSGT00950000183046.a.b.l.h #15 ENSGT00940000157900.m.b #16 ENSGT00940000154268.l.b ##17 ENSGT00940000154376.a.a.e #19 ENSGT00950000182883.a.a.a.j #20 ENSGT00730000110974.a.i #21 ENSGT00940000162556.G.d.h ENSGT00390000010440.g.b.b ##22 ENSGT00940000177451 ENSGT00940000157423.a.a.n #23 ENSGT00940000166349.g.b #24 ENSGT00940000158253.ad.b #25 ENSGT00390000014069.b.h #26 ENSGT00940000160773.e.b #28 ENSGT00400000022305.g.a River trout DUPLICATION River trout MODERN SPECIES 25 MAP3K3 (ENSSTUG00000010827) limd2 (ENSSTUG00000010876) ddx42 (ENSSTUG00000010932) strada (ENSSTUG00000010993) rnf113a (ENSSTUG00000011287) RUNDC3A (ENSSTUG00000011397) #14 ENSSTUG00000011469 ENSSTUG00000011472 ENSSTUG00000011481 FAM117A (ENSSTUG00000011495) #15 slc35b1 (ENSSTUG00000011509) #16 NDUFA4 (ENSSTUG00000011529) ##17 NXPH3 (ENSSTUG00000011547) #20 NGFR (ENSSTUG00000011551) #21 ENSSTUG00000011574 MIEN1 (ENSSTUG00000011587) ##22 selenow2a (ENSSTUG00000011618) #22 slc4a1a (ENSSTUG00000011652) #23 ENSSTUG00000011836 ubtf (ENSSTUG00000011856) #24 ENSSTUG00000012160 atxn7l3a (ENSSTUG00000012169) #25 tmub2 (ENSSTUG00000012226) #26 asb16 (ENSSTUG00000012239) #28 ENSSTUG00000012247 ENSSTUG00000012253 ENSSTUG00000012259 asic2 (ENSSTUG00000012265) trpm4a (ENSSTUG00000012285) RRN3 (ENSSTUG00000036705) ENSSTUG00000037293 River trout MODERN SPECIES kcnh6a (ENSSTUG00000000205) gfap (ENSSTUG00000000241) MAP3K3 (ENSSTUG00000000257) limd2 (ENSSTUG00000000292) ddx42 (ENSSTUG00000000304) strada (ENSSTUG00000000336) rnf113a (ENSSTUG00000000386) RUNDC3A (ENSSTUG00000000407) #14 ENSSTUG00000000426 ENSSTUG00000000428 ENSSTUG00000000434 #15 slc35b1 (ENSSTUG00000000456) #16 ENSSTUG00000000464 ##17 NGFR (ENSSTUG00000000477) #21 ENSSTUG00000000489 MIEN1 (ENSSTUG00000000493) ##22 ENSSTUG00000000499 slc4a1a (ENSSTUG00000000511) #23 ENSSTUG00000000594 ubtf (ENSSTUG00000000628) #24 atxn7l3a (ENSSTUG00000000755) #25 tmub2 (ENSSTUG00000000771) #26 asb16 (ENSSTUG00000000778) #28 ENSSTUG00000000781 ENSSTUG00000000787 asic2 (ENSSTUG00000000790) trpm4a (ENSSTUG00000000814) RRN3 (ENSSTUG00000000879) ENSSTUG00000001387 ENSSTUG00000001392 ENSSTUG00000001395 Northern pike MODERN SPECIES 10 limd2 (ENSELUG00000020528) ddx42 (ENSELUG00000020593) strada (ENSELUG00000020637) rnf113a (ENSELUG00000020657) ENSELUG00000020665 ENSELUG00000020675 RUNDC3A (ENSELUG00000020709) #14 ENSELUG00000020723 #15 slc35b1 (ENSELUG00000020756) #16 ENSELUG00000020792 ##17 spop (ENSELUG00000021725) #19 NXPH3 (ENSELUG00000021845) #20 ENSELUG00000021850 NGFR (ENSELUG00000021915) #21 ENSELUG00000021930 MIEN1 (ENSELUG00000021956) ##22 selenow2a (ENSELUG00000021964) #22 slc4a1a (ENSELUG00000021990) #23 ubtf (ENSELUG00000022011) #24 atxn7l3a (ENSELUG00000022068) #25 tmub2 (ENSELUG00000022078) #26 asb16 (ENSELUG00000022103) #28 ENSELUG00000022131 ENSELUG00000022146 asic2 (ENSELUG00000022180) RRN3 (ENSELUG00000022239) ENSELUG00000022251 ENSELUG00000026953 ENSELUG00000031082 ENSELUG00000022300 ENSELUG00000032997