Otomorpha ANCESTRAL SPECIES 36 ENSGT00940000158767 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 #23 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00390000014069.b ENSGT00940000160773 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.f ENSGT00390000012062 ENSGT00940000166828 Clupeiformes ANCESTRAL SPECIES 155 ENSGT00940000158377.a ENSGT00940000156559 ENSGT00940000158827 ENSGT00390000016292 ENSGT00940000158922.d ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00950000183046.a.b.l.d ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154268.l ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 #23 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00940000158253.t.b #26 ENSGT00390000014069.b ENSGT00940000160773 ENSGT00400000022305 ENSGT00940000154991.a.b ENSGT00940000154991.a.a ENSGT00940000157190.c ENSGT00710000106813.B.a ENSGT00940000161586.c ENSGT01080000257365.b.a.a.b.b.e.a ENSGT00390000012062 ENSGT00940000166828 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 17 DDX39A (ENSDCDG00000014300) #7 ENSDCDG00000014350 #8 ENSDCDG00000014679 #9 txn2 (ENSDCDG00000014684) #10 PMM1 (ENSDCDG00000014692) #11 CSDC2 (ENSDCDG00000014701) #12 polr3h (ENSDCDG00000014710) #13 aco2 (ENSDCDG00000014738) #14 TOB2 (ENSDCDG00000014782) #15 tefb (ENSDCDG00000014799) #16 ZC3H7B (ENSDCDG00000014806) #17 ENSDCDG00000014808 #18 rbx1 (ENSDCDG00000014818) #19 st13 (ENSDCDG00000014821) #20 NGFR (ENSDCDG00000014824) #21 selenow2a (ENSDCDG00000014831) #22 ENSDCDG00000014832 #23 slc4a1a (ENSDCDG00000014856) #24 ubtf (ENSDCDG00000015891) #25 ENSDCDG00000016063 #26 ENSDCDG00000016069 #27 ENSDCDG00000016071 #28 MCOLN1 (ENSDCDG00000016088) #29 ENSDCDG00000016271 #30 pkn1b (ENSDCDG00000016321) #31 ENSDCDG00000020239 #32 ENSDCDG00000020243 #33 LRRC8E (ENSDCDG00000020248) #34 DDX39A (ENSDCDG00000020253) #35 ENSDCDG00000020274 #36 txn2 (ENSDCDG00000020323) #37 Denticle herring MODERN SPECIES 17 ENSDCDG00000004824 limd2 (ENSDCDG00000004827) ddx42 (ENSDCDG00000004861) rnf113a (ENSDCDG00000004923) RUNDC3A (ENSDCDG00000004935) ENSDCDG00000004970 ENSDCDG00000004971 ENSDCDG00000004972 ENSDCDG00000004973 slc35b1 (ENSDCDG00000004974) ndufa4a (ENSDCDG00000004976) spop (ENSDCDG00000004979) NXPH3 (ENSDCDG00000004980) NXPH3 (ENSDCDG00000004981) NGFR (ENSDCDG00000004984) ##21 selenow2a (ENSDCDG00000004988) ##22 ENSDCDG00000004992 ##23 slc4a1a (ENSDCDG00000004996) ##24 ubtf (ENSDCDG00000005186) ##25 ENSDCDG00000005213 ##27 ENSDCDG00000005216 ##28 MCOLN1 (ENSDCDG00000005225) ##29 ENSDCDG00000005316 pkn1b (ENSDCDG00000005321) ##31 ENSDCDG00000005425 ##32 ENSDCDG00000013934 LRRC8E (ENSDCDG00000013968) ##34 DDX39A (ENSDCDG00000014300) #7 ENSDCDG00000014350 #8 ENSDCDG00000014679 #9 txn2 (ENSDCDG00000014684) #10 Atlantic herring MODERN SPECIES slc35b1 (ENSCHAG00000008733) FAM117A (ENSCHAG00000009073) RUNDC3A (ENSCHAG00000009114) ENSCHAG00000009129 ENSCHAG00000009140 ENSCHAG00000009169 rnf113a (ENSCHAG00000009175) strada (ENSCHAG00000009246) ddx42 (ENSCHAG00000009427) limd2 (ENSCHAG00000009547) MAP3K3 (ENSCHAG00000009572) gfap (ENSCHAG00000010212) kcnh6a (ENSCHAG00000010459) dcaf7 (ENSCHAG00000010570) ccdc47 (ENSCHAG00000010602) selenow2a (ENSCHAG00000010747) #22 slc4a1a (ENSCHAG00000010815) #24 ubtf (ENSCHAG00000012302) #25 atxn7l3a (ENSCHAG00000012748) ##26 asb16 (ENSCHAG00000012893) ENSCHAG00000012905 ENSCHAG00000012911 asic2 (ENSCHAG00000012932) MPP3 (ENSCHAG00000013278) ENSCHAG00000013943 ENSCHAG00000013971 ENSCHAG00000013987 ENSCHAG00000014004 ENSCHAG00000014020 tmem98 (ENSCHAG00000014052) ENSCHAG00000014087 Otophysi ANCESTRAL SPECIES 46 ENSGT00390000014062 ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 #23 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00940000158253 #26 ENSGT00390000014069.b ENSGT00940000160773 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a Characiphysae ANCESTRAL SPECIES 11 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00940000158253 #26 ENSGT00390000014069.b ENSGT00940000160773 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Characiphysae_b ANCESTRAL SPECIES 30 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000177451 #23 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00940000158253 #26 ENSGT00390000014069.b ENSGT00940000160773 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 Characoidei ANCESTRAL SPECIES 25 ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00940000177150 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00940000158253 #26 ENSGT00390000014069.b ENSGT00940000160773 ENSGT01090000260029.a.a.b.a.b ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000168169 ENSGT00390000012014.B Mexicana tetra MODERN SPECIES 45 slc35b1 (ENSAMXG00000032034) ndufa4a (ENSAMXG00000002982) spop (ENSAMXG00000003082) NXPH3 (ENSAMXG00000041514) NGFR (ENSAMXG00000040581) #21 selenow2a (ENSAMXG00000033118) #22 ENSAMXG00000030771 slc4a1a (ENSAMXG00000015300) #24 ubtf (ENSAMXG00000035871) #25 atxn7l3a (ENSAMXG00000038051) #26 tmub2 (ENSAMXG00000043336) asb16 (ENSAMXG00000015407) ENSAMXG00000032402 vat1 (ENSAMXG00000036949) ENSAMXG00000036024 rnd2 (ENSAMXG00000031503) MRC2 (ENSAMXG00000010776) tlk2 (ENSAMXG00000041307) mettl2a (ENSAMXG00000015090) itgb3a (ENSAMXG00000015136) ENSAMXG00000040234 Red-bellied piranha MODERN SPECIES 12 sgf29 (ENSPNAG00000014651) nfatc2ip (ENSPNAG00000014624) spns1 (ENSPNAG00000003183) atxn2l (ENSPNAG00000014538) RUNDC3A (ENSPNAG00000003123) ENSPNAG00000003106 ENSPNAG00000003101 ENSPNAG00000003099 FAM117A (ENSPNAG00000014371) slc35b1 (ENSPNAG00000014346) ndufa4a (ENSPNAG00000014314) spop (ENSPNAG00000014291) NXPH3 (ENSPNAG00000003045) NGFR (ENSPNAG00000014190) #21 ENSPNAG00000003042 selenow2a (ENSPNAG00000014155) #22 slc4a1a (ENSPNAG00000014118) #24 ubtf (ENSPNAG00000013986) #25 atxn7l3a (ENSPNAG00000013956) #26 tmub2 (ENSPNAG00000002993) asb16 (ENSPNAG00000013926) ENSPNAG00000002988 ENSPNAG00000002987 vat1 (ENSPNAG00000013902) rnd2 (ENSPNAG00000002981) MRC2 (ENSPNAG00000002977) tlk2 (ENSPNAG00000013857) itgb3a (ENSPNAG00000013832) rprml (ENSPNAG00000002931) ENSPNAG00000013757 tcap (ENSPNAG00000013730) Channel catfish MODERN SPECIES 11 ENSIPUG00000001371 Cdipt (ENSIPUG00000001351) Maz (ENSIPUG00000001307) nlk.2 (ENSIPUG00000001284) fam57b (ENSIPUG00000001260) ENSIPUG00000001253 ENSIPUG00000001250 rundc3a (ENSIPUG00000001220) FAM117A (ENSIPUG00000001205) slc35b1 (ENSIPUG00000001169) ndufa4a (ENSIPUG00000024420) ENSIPUG00000024418 spop (ENSIPUG00000024416) nxph3 (ENSIPUG00000024402) ngfr (ENSIPUG00000024356) #21 selenow2a (ENSIPUG00000024355) #22 slc4a1 (ENSIPUG00000024349) #24 UBTF (ENSIPUG00000024337) #25 atxn7l3a (ENSIPUG00000024323) #26 Tmub2 (ENSIPUG00000024321) ENSIPUG00000024319 asb16 (ENSIPUG00000024318) ENSIPUG00000024315 ENSIPUG00000024313 vat1 (ENSIPUG00000024311) Rnd2 (ENSIPUG00000024310) mrc2 (ENSIPUG00000024194) tlk2 (ENSIPUG00000024193) mettl2a (ENSIPUG00000024192) ENSIPUG00000024191 itgb3a (ENSIPUG00000024190) Cyprinoidei ANCESTRAL SPECIES 65 ENSGT00940000163160.b.d.a.a ENSGT00940000159991.A.a ENSGT00940000154169.A.h ENSGT00940000158525.u ENSGT00940000165613 ENSGT01010000222313.A.b.b.a.a.b.a ENSGT00990000204783 ENSGT00960000187164 ENSGT00940000158922.d ENSGT00950000183046.a.b.l ENSGT00940000157900 ENSGT00940000154268.k.a ENSGT00940000154376.a.a ENSGT00950000182883.a.a.a ENSGT00730000110974.a #21 ENSGT00390000010440.g.a #22 ENSGT00390000010440.h ##22 ENSGT00940000157423.a.a #24 ENSGT00940000166349 #25 ENSGT00940000158253 #26 ENSGT00390000014069.b ENSGT00940000160773 ENSGT00940000154578.A.c.b.d ENSGT00940000157579.a ENSGT00940000157020.g.a ENSGT01050000244842.a.b.b.b ENSGT00950000182984.b.a.a.c.a ENSGT00940000156059 ENSGT01090000259987.b.b.a.a.a.a ENSGT00390000010523.c.a ENSGT00940000163160.b.d.b Cyprininae ANCESTRAL SPECIES 269 ENSGT00990000204783.d ENSGT00960000187164.d ENSGT00940000158922.d.d ENSGT00950000183046.a.b.l.a ENSGT00940000157900.p ENSGT00940000154268.k.a.c.a ENSGT00940000154376.a.a.b ENSGT00950000182883.a.a.a.d ENSGT00730000110974.a.d #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.c #24 ENSGT00940000166349.n #25 ENSGT00940000158253.db.a #26 ENSGT00390000014069.b.l ENSGT00940000154578.A.c.b.d.l ENSGT00940000157579.a.c ENSGT00940000157020.g.a.d ENSGT01050000244842.a.b.b.b.j ENSGT00950000182984.b.a.a.c.a.d ENSGT01090000259987.b.b.a.a.a.a.d ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g ENSGT00940000160492.b ENSGT00940000159252.b.b.d Cyprininae_a ANCESTRAL SPECIES 113 ENSGT00940000158922.d.d ENSGT00950000183046.a.b.l.a ENSGT00940000157900.p ENSGT00940000154268.k.a.c.a ENSGT00940000154376.a.a.b ENSGT00950000182883.a.a.a.d ENSGT00730000110974.a.d #21 ENSGT00390000010440.g.a #22 ENSGT00940000157423.a.a.c #24 ENSGT00940000166349.n #25 ENSGT00940000158253.db.a #26 ENSGT00390000014069.b.l ENSGT00940000160773.h ENSGT00940000154578.A.c.b.d.l ENSGT00940000157579.a.c ENSGT00940000157020.g.a.d ENSGT01050000244842.a.b.b.b.j ENSGT00950000182984.b.a.a.c.a.d ENSGT00940000156059.o ENSGT01090000259987.b.b.a.a.a.a.c.b ENSGT00390000010523.c.a.h ENSGT00390000014062.d ENSGT00950000183143.c.b.g Common carp reference DUPLICATION Common carp reference MODERN SPECIES 3 ENSCCRG00000078937 ENSCCRG00000040560 tcap (ENSCCRG00000076036) zgc:123295 (ENSCCRG00000028123) ENSCCRG00000037739 ENSCCRG00000056548 nlk1 (ENSCCRG00000039894) tlcd3ba (ENSCCRG00000062094) ENSCCRG00000049848 FAM117A (ENSCCRG00000070826) slc35b1 (ENSCCRG00000049949) ndufa4a (ENSCCRG00000050500) spop (ENSCCRG00000011772) NXPH3 (ENSCCRG00000037538) NGFR (ENSCCRG00000011220) #21 selenow2a (ENSCCRG00000067963) #22 slc4a1a (ENSCCRG00000077482) #24 ubtf (ENSCCRG00000008775) #25 atxn7l3a (ENSCCRG00000008754) #26 tmub2 (ENSCCRG00000080193) asb16 (ENSCCRG00000008740) ENSCCRG00000061047 vat1 (ENSCCRG00000066633) rnd2 (ENSCCRG00000024725) MRC2 (ENSCCRG00000011390) tlk2 (ENSCCRG00000066124) mettl2a (ENSCCRG00000008201) itgb3a (ENSCCRG00000049656) rprml (ENSCCRG00000058144) hirip3 (ENSCCRG00000051117) kctd13 (ENSCCRG00000051112) Common carp reference MODERN SPECIES 1 ENSCCRG00000072003 tcap (ENSCCRG00000058197) zgc:123295 (ENSCCRG00000053214) zgc:112038 (ENSCCRG00000037376) zgc:123295 (ENSCCRG00000075360) ENSCCRG00000029846 ENSCCRG00000058911 nlk1 (ENSCCRG00000029985) ENSCCRG00000039928 FAM117A (ENSCCRG00000039941) slc35b1 (ENSCCRG00000039955) ndufa4a (ENSCCRG00000064261) spop (ENSCCRG00000070256) NXPH3 (ENSCCRG00000061205) NGFR (ENSCCRG00000008669) #21 selenow2a (ENSCCRG00000082469) #22 selenow2b (ENSCCRG00000065161) ##22 slc4a1a (ENSCCRG00000010545) #24 ubtf (ENSCCRG00000015544) #25 atxn7l3a (ENSCCRG00000017230) #26 tmub2 (ENSCCRG00000008660) asb16 (ENSCCRG00000017234) ENSCCRG00000017238 vat1 (ENSCCRG00000058207) ENSCCRG00000065467 rnd2 (ENSCCRG00000077623) ENSCCRG00000032612 mettl2a (ENSCCRG00000010206) itgb3a (ENSCCRG00000006571) rprml (ENSCCRG00000061133) hirip3 (ENSCCRG00000051794) Goldfish MODERN SPECIES 20 ENSCARG00000014184 cdipt (ENSCARG00000014413) ENSCARG00000014426 nlk1 (ENSCARG00000014437) tlcd3ba (ENSCARG00000014509) RUNDC3A (ENSCARG00000014516) ENSCARG00000014535 ENSCARG00000014537 FAM117A (ENSCARG00000014543) slc35b1 (ENSCARG00000014573) ndufa4a (ENSCARG00000015466) spop (ENSCARG00000015476) NXPH3 (ENSCARG00000015485) ENSCARG00000015486 NGFR (ENSCARG00000015495) #21 selenow2a (ENSCARG00000015514) #22 selenow2b (ENSCARG00000015527) ##22 slc4a1a (ENSCARG00000015560) #24 ubtf (ENSCARG00000015828) #25 atxn7l3a (ENSCARG00000015976) #26 tmub2 (ENSCARG00000016031) asb16 (ENSCARG00000016042) ENSCARG00000016050 vat1 (ENSCARG00000016057) rnd2 (ENSCARG00000016068) ENSCARG00000016088 MRC2 (ENSCARG00000016205) tlk2 (ENSCARG00000019314) mettl2a (ENSCARG00000020135) itgb3a (ENSCARG00000020529) rprml (ENSCARG00000023497) Zebrafish MODERN SPECIES 18 zgc:153968 (ENSDARG00000061858) zgc:112038 (ENSDARG00000046140) zgc:123295 (ENSDARG00000056324) ENSDARG00000074899 cdipt (ENSDARG00000070686) ENSDARG00000087330 nlk1 (ENSDARG00000006566) tlcd3ba (ENSDARG00000026875) RUNDC3A (ENSDARG00000007245) FAM117A (ENSDARG00000078640) slc35b1 (ENSDARG00000038213) ndufa4a (ENSDARG00000099499) spop (ENSDARG00000100519) NXPH3 (ENSDARG00000070694) NGFR (ENSDARG00000088708) #21 selenow2a (ENSDARG00000038228) #22 selenow2b (ENSDARG00000089936) ##22 slc4a1a (ENSDARG00000012881) #24 ubtf (ENSDARG00000035066) #25 atxn7l3a (ENSDARG00000029331) #26 tmub2 (ENSDARG00000056467) asb16 (ENSDARG00000056468) vat1 (ENSDARG00000056481) rnd2 (ENSDARG00000070735) MRC2 (ENSDARG00000078135) tlk2 (ENSDARG00000010779) mettl2a (ENSDARG00000008105) itgb3a (ENSDARG00000056767) rprml (ENSDARG00000056768) zgc:163079 (ENSDARG00000056773) ENSDARG00000101956