Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32
Sarcopterygii	ANCESTRAL SPECIES	54	ENSGT00940000154958	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Amniota	ANCESTRAL SPECIES	2	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Mammalia	ANCESTRAL SPECIES	1	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Theria	ANCESTRAL SPECIES	6	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Eutheria	ANCESTRAL SPECIES	2	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Laurasiatheria	ANCESTRAL SPECIES	11											ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00390000008918.b #15	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00390000008918.b #15	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188
Equus	ANCESTRAL SPECIES	24	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00390000008918.b #15	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT01090000263428 #24	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000166009 #35	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Donkey	MODERN SPECIES	22	BLK (ENSEASG00005016418) #7	GATA4 (ENSEASG00005016423) #8	NEIL2 (ENSEASG00005016432) #9	FDFT1 (ENSEASG00005016434) #10	CTSB (ENSEASG00005016436) #11	DEFB136 (ENSEASG00005027548) #12	ENSEASG00005037809 #13	ENSEASG00005028451 #14	ENSEASG00005016441 #15	ENSEASG00005016445 #16	ENSEASG00005016450 #17	GLRA3 (ENSEASG00005016461) #18	HPGD (ENSEASG00005016490) #19	CEP44 (ENSEASG00005020934) #20	FBXO8 (ENSEASG00005020940) #21	HAND2 (ENSEASG00005020948) #22	SCRG1 (ENSEASG00005036844) #23	ENSEASG00005034123 #24	SAP30 (ENSEASG00005020956) #25	HMGB2 (ENSEASG00005032823) #26	GALNT7 (ENSEASG00005020974) #27	GALNTL6 (ENSEASG00005020980) #28	AADAT (ENSEASG00005021037) #29	MFAP3L (ENSEASG00005036117) #30	HPF1 (ENSEASG00005021112) #31	CLCN3 (ENSEASG00005021120) #32	NEK1 (ENSEASG00005021225) #33	SH3RF1 (ENSEASG00005021491) #34	ENSEASG00005038062 #35	CBR4 (ENSEASG00005036781) #36	PALLD (ENSEASG00005021504) #37
Horse	MODERN SPECIES	11	GATA4 (ENSECAG00000020359) #8	NEIL2 (ENSECAG00000020992) #9	FDFT1 (ENSECAG00000021133) #10	CTSB (ENSECAG00000023820) #11	ENSECAG00000001777 #12	DEFB135 (ENSECAG00000037097) #13	DEFB134 (ENSECAG00000043627)	ENSECAG00000023834 #14	ENSECAG00000034173 #15	ENSECAG00000040757	ADAM29 (ENSECAG00000002189) #17	GLRA3 (ENSECAG00000023999) #18	HPGD (ENSECAG00000005379) #19	CEP44 (ENSECAG00000005916) #20	FBXO8 (ENSECAG00000007723) #21	HAND2 (ENSECAG00000060197) #22	SCRG1 (ENSECAG00000054139) #23	SAP30 (ENSECAG00000009676) #25	ENSECAG00000057681 #24	HMGB2 (ENSECAG00000010132) #26	GALNT7 (ENSECAG00000010243) #27	GALNTL6 (ENSECAG00000011615) #28	ENSECAG00000045153	ENSECAG00000043898	ENSECAG00000046681	ENSECAG00000052726	AADAT (ENSECAG00000013400) #29	MFAP3L (ENSECAG00000002425) #30	HPF1 (ENSECAG00000013735) #31	CLCN3 (ENSECAG00000014556) #32	NEK1 (ENSECAG00000017058) #33
Chiroptera	ANCESTRAL SPECIES	61	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Microchiroptera	ANCESTRAL SPECIES	52	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Greater horseshoe bat	MODERN SPECIES	9	BLK (ENSRFEG00010016722) #7	GATA4 (ENSRFEG00010016784) #8	NEIL2 (ENSRFEG00010016871) #9	FDFT1 (ENSRFEG00010016943) #10	CTSB (ENSRFEG00010017182) #11	DEFB136 (ENSRFEG00010017222) #12	ENSRFEG00010017285	ENSRFEG00010005316	ENSRFEG00010005327 #14	ENSRFEG00010005345 #16	ADAM29 (ENSRFEG00010005384) #17	GLRA3 (ENSRFEG00010005453) #18	HPGD (ENSRFEG00010005547) #19	CEP44 (ENSRFEG00010005621) #20	FBXO8 (ENSRFEG00010005707) #21	HAND2 (ENSRFEG00010005773) #22	SAP30 (ENSRFEG00010005802) #25	SCRG1 (ENSRFEG00010005843) #23	ENSRFEG00010005858 #26	GALNT7 (ENSRFEG00010005905) #27	GALNTL6 (ENSRFEG00010005964) #28	AADAT (ENSRFEG00010006065) #29	MFAP3L (ENSRFEG00010006163) #30	HPF1 (ENSRFEG00010006209) #31	CLCN3 (ENSRFEG00010006286) #32	NEK1 (ENSRFEG00010006499) #33	SH3RF1 (ENSRFEG00010006828) #34	CBR4 (ENSRFEG00010006884) #36	PALLD (ENSRFEG00010006988) #37	DDX60 (ENSRFEG00010007842)	ANXA10 (ENSRFEG00010009234)
Microbat	MODERN SPECIES	938	DEFB135 (ENSMLUG00000028144) #13	DEFB134 (ENSMLUG00000001105)	ENSMLUG00000022833 #14	ENSMLUG00000008475 #16	ENSMLUG00000029033 #16	ENSMLUG00000025445 #16	ENSMLUG00000029740 #16	ENSMLUG00000026686 #16	ENSMLUG00000028797 #16	ADAM29 (ENSMLUG00000003336) #17	GLRA3 (ENSMLUG00000012663) #18	ENSMLUG00000026215	HPGD (ENSMLUG00000008462) #19	CEP44 (ENSMLUG00000008984) #20	FBXO8 (ENSMLUG00000008969) #21	HAND2 (ENSMLUG00000002599) #22	SCRG1 (ENSMLUG00000002597) #23	SAP30 (ENSMLUG00000003295) #25	HMGB2 (ENSMLUG00000026303) #26	ENSMLUG00000028992	GALNT7 (ENSMLUG00000000765) #27	GALNTL6 (ENSMLUG00000000752) #28	MFAP3L (ENSMLUG00000007876) #30	ENSMLUG00000017052 #31	CLCN3 (ENSMLUG00000017048) #32	NEK1 (ENSMLUG00000006424) #33	SH3RF1 (ENSMLUG00000006412) #34	CBR4 (ENSMLUG00000017531) #36	PALLD (ENSMLUG00000007647) #37	DDX60 (ENSMLUG00000007300)	ANXA10 (ENSMLUG00000014591)
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Canidae	ANCESTRAL SPECIES	31	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00390000012929	ENSGT00940000153231.A
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000153201.j.m.a.e.b.a.b	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00390000018086.z.j.b.a.b.a.b	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00390000012929
Dingo	MODERN SPECIES	304	FAM167A (ENSCAFG00020011990)	BLK (ENSCAFG00020011981) #7	GATA4 (ENSCAFG00020011965) #8	NEIL2 (ENSCAFG00020011961) #9	FDFT1 (ENSCAFG00020011957) #10	CTSB (ENSCAFG00020011953) #11	DEFB136 (ENSCAFG00020011951) #12	DEFB135 (ENSCAFG00020011947) #13	DEFB134 (ENSCAFG00020011944)	ENSCAFG00020011935 #16	ADAM29 (ENSCAFG00020011928) #17	GLRA3 (ENSCAFG00020011792) #18	HPGD (ENSCAFG00020011781) #19	CEP44 (ENSCAFG00020011776) #20	FBXO8 (ENSCAFG00020011774) #21	HAND2 (ENSCAFG00020011768) #22	SCRG1 (ENSCAFG00020011766) #23	SAP30 (ENSCAFG00020011765) #25	HMGB2 (ENSCAFG00020011761) #26	GALNT7 (ENSCAFG00020011759) #27	ENSCAFG00020011757	GALNTL6 (ENSCAFG00020011754) #28	ENSCAFG00020011750 #28	ENSCAFG00020011745	ENSCAFG00020011729	ENSCAFG00020011716	AADAT (ENSCAFG00020011708) #29	MFAP3L (ENSCAFG00020011703) #30	HPF1 (ENSCAFG00020011689) #31	CLCN3 (ENSCAFG00020006092) #32	NEK1 (ENSCAFG00020003641) #33
Dog	MODERN SPECIES	17	BLK (ENSCAFG00845019394) #7	GATA4 (ENSCAFG00845019258) #8	NEIL2 (ENSCAFG00845019176) #9	FDFT1 (ENSCAFG00845018898) #10	CTSB (ENSCAFG00845018672) #11	DEFB136 (ENSCAFG00845018563) #12	DEFB135 (ENSCAFG00845018525) #13	ENSCAFG00845018500 #14	ENSCAFG00845018467	ENSCAFG00845018425 #16	ADAM29 (ENSCAFG00845018395) #17	GLRA3 (ENSCAFG00845018265) #18	HPGD (ENSCAFG00845018083) #19	CEP44 (ENSCAFG00845017832) #20	FBXO8 (ENSCAFG00845017782) #21	HAND2 (ENSCAFG00845017182) #22	SCRG1 (ENSCAFG00845017141) #23	SAP30 (ENSCAFG00845017098) #25	HMGB2 (ENSCAFG00845017050) #26	ENSCAFG00845016982 #27	ENSCAFG00845016838	ENSCAFG00845016810	GALNTL6 (ENSCAFG00845016564) #28	ENSCAFG00845028629	ENSCAFG00845028616	AADAT (ENSCAFG00845028500) #29	MFAP3L (ENSCAFG00845028385) #30	HPF1 (ENSCAFG00845028301) #31	CLCN3 (ENSCAFG00845028065) #32	NEK1 (ENSCAFG00845026873) #33	SH3RF1 (ENSCAFG00845026368) #34
Red fox	MODERN SPECIES	136											ADAM29 (ENSVVUG00000016674) #17	GLRA3 (ENSVVUG00000016683) #18	HPGD (ENSVVUG00000016778) #19	CEP44 (ENSVVUG00000016785) #20	FBXO8 (ENSVVUG00000016793) #21	HAND2 (ENSVVUG00000016802) #22	SCRG1 (ENSVVUG00000016808) #23	SAP30 (ENSVVUG00000016813) #25	HMGB2 (ENSVVUG00000016822) #26	GALNT7 (ENSVVUG00000016828) #27	GALNTL6 (ENSVVUG00000016851) #28	ENSVVUG00000016858 #28	AADAT (ENSVVUG00000016907) #29	MFAP3L (ENSVVUG00000016925) #30	HPF1 (ENSVVUG00000016932) #31	CLCN3 (ENSVVUG00000016944) #32	NEK1 (ENSVVUG00000016978) #33	ENSVVUG00000017110	SH3RF1 (ENSVVUG00000017114) #34
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680.r #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00390000008918.b #15	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Giant Panda	MODERN SPECIES	15	BLK (ENSAMEG00000006136) #7	GATA4 (ENSAMEG00000026638) #8	NEIL2 (ENSAMEG00000006208) #9	FDFT1 (ENSAMEG00000006214) #10	CTSB (ENSAMEG00000006251) #11	DEFB136 (ENSAMEG00000006271) #12	DEFB135 (ENSAMEG00000006275) #13	ENSAMEG00000006278	ENSAMEG00000006279 #14	ENSAMEG00000024764 #15	ENSAMEG00000019429 #16	ENSAMEG00000014123 #18	HPGD (ENSAMEG00000014144) #19	CEP44 (ENSAMEG00000014171) #20	FBXO8 (ENSAMEG00000014187) #21	HAND2 (ENSAMEG00000014235) #22	SCRG1 (ENSAMEG00000014244) #23	SAP30 (ENSAMEG00000014246) #25	HMGB2 (ENSAMEG00000014262) #26	GALNT7 (ENSAMEG00000014267) #27	GALNTL6 (ENSAMEG00000024177) #28	AADAT (ENSAMEG00000000909) #29	MFAP3L (ENSAMEG00000000904) #30	HPF1 (ENSAMEG00000013232) #31	CLCN3 (ENSAMEG00000013246) #32	NEK1 (ENSAMEG00000013287) #33	ENSAMEG00000013347	SH3RF1 (ENSAMEG00000013355) #34	CBR4 (ENSAMEG00000013400) #36	PALLD (ENSAMEG00000013412) #37	DDX60 (ENSAMEG00000013429)
Ursus	ANCESTRAL SPECIES																	ENSGT00940000160772 #22
American black bear	MODERN SPECIES	6244																HAND2 (ENSUAMG00000006461) #22
Mustelinae	ANCESTRAL SPECIES	132	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00740000117098
American mink	MODERN SPECIES	658																HAND2 (ENSNVIG00000013388) #22
Ferret	MODERN SPECIES	280	ENSMPUG00000001782	MTMR9 (ENSMPUG00000001785)	ENSMPUG00000001788	FAM167A (ENSMPUG00000001811)	BLK (ENSMPUG00000001813) #7	GATA4 (ENSMPUG00000001816) #8	NEIL2 (ENSMPUG00000001820) #9	FDFT1 (ENSMPUG00000001829) #10	CTSB (ENSMPUG00000001830) #11	ENSMPUG00000018735 #16	ADAM29 (ENSMPUG00000001832) #17	ENSMPUG00000001834 #18	HPGD (ENSMPUG00000001867) #19	CEP44 (ENSMPUG00000001870) #20	FBXO8 (ENSMPUG00000001872) #21	HAND2 (ENSMPUG00000001909) #22	SCRG1 (ENSMPUG00000001913) #23	SAP30 (ENSMPUG00000001916) #25	HMGB2 (ENSMPUG00000001919) #26	GALNT7 (ENSMPUG00000001925) #27	GALNTL6 (ENSMPUG00000001928) #28	ENSMPUG00000001932 #28
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.y #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Cat	MODERN SPECIES	235	GATA4 (ENSFCAG00000015036) #8	NEIL2 (ENSFCAG00000045745) #9	FDFT1 (ENSFCAG00000015040) #10	CTSB (ENSFCAG00000015041) #11	DEFB136 (ENSFCAG00000046318) #12	ENSFCAG00000039776 #13	DEFB134 (ENSFCAG00000044128)	ENSFCAG00000034552 #14	ENSFCAG00000052595	ENSFCAG00000053671 #16	ADAM29 (ENSFCAG00000043968) #17	GLRA3 (ENSFCAG00000028576) #18	HPGD (ENSFCAG00000004720) #19	CEP44 (ENSFCAG00000023953) #20	FBXO8 (ENSFCAG00000015055) #21	HAND2 (ENSFCAG00000043727) #22	SCRG1 (ENSFCAG00000007702) #23	SAP30 (ENSFCAG00000025710) #25	HMGB2 (ENSFCAG00000004218) #26	GALNT7 (ENSFCAG00000008106) #27	GALNTL6 (ENSFCAG00000008104) #28	AADAT (ENSFCAG00000012591) #29	MFAP3L (ENSFCAG00000012588) #30	HPF1 (ENSFCAG00000023188) #31	CLCN3 (ENSFCAG00000000778) #32	NEK1 (ENSFCAG00000007579) #33	ENSFCAG00000026999	SH3RF1 (ENSFCAG00000005799) #34	CBR4 (ENSFCAG00000030280) #36	PALLD (ENSFCAG00000027262) #37	DDX60 (ENSFCAG00000010766)
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.y #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672 #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.y #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
lion	MODERN SPECIES	4	BLK (ENSPLOG00000000579) #7	GATA4 (ENSPLOG00000000602) #8	NEIL2 (ENSPLOG00000000622) #9	FDFT1 (ENSPLOG00000000653) #10	CTSB (ENSPLOG00000000697) #11	DEFB136 (ENSPLOG00000000721) #12	ENSPLOG00000000742	DEFB134 (ENSPLOG00000000754)	ENSPLOG00000000765 #14	ENSPLOG00000000782 #16	ADAM29 (ENSPLOG00000000794) #17	GLRA3 (ENSPLOG00000000823) #18	HPGD (ENSPLOG00000000888) #19	CEP44 (ENSPLOG00000000965) #20	FBXO8 (ENSPLOG00000000995) #21	HAND2 (ENSPLOG00000001020) #22	SAP30 (ENSPLOG00000001044) #25	SCRG1 (ENSPLOG00000001062) #23	ENSPLOG00000001073 #26	GALNT7 (ENSPLOG00000001095) #27	GALNTL6 (ENSPLOG00000001123) #28	AADAT (ENSPLOG00000001178) #29	MFAP3L (ENSPLOG00000001200) #30	HPF1 (ENSPLOG00000001222) #31	CLCN3 (ENSPLOG00000001246) #32	NEK1 (ENSPLOG00000001370) #33	SH3RF1 (ENSPLOG00000001582) #34	CBR4 (ENSPLOG00000001598) #36	PALLD (ENSPLOG00000001684) #37	DDX60 (ENSPLOG00000001802)	ANXA10 (ENSPLOG00000001849)
leopard	DUPLICATION
leopard	MODERN SPECIES	6	GATA4 (ENSPPRG00000009026) #8	NEIL2 (ENSPPRG00000006001) #9	FDFT1 (ENSPPRG00000005765) #10	CTSB (ENSPPRG00000003402) #11	ENSPPRG00000022162 #12	DEFB135 (ENSPPRG00000002451) #13	DEFB134 (ENSPPRG00000001840)	ENSPPRG00000001731	ENSPPRG00000000391	ADAM29 (ENSPPRG00000021979) #17	GLRA3 (ENSPPRG00000023183) #18	HPGD (ENSPPRG00000023873) #19	CEP44 (ENSPPRG00000024573) #20	FBXO8 (ENSPPRG00000024959) #21	ENSPPRG00000019577	ENSPPRG00000018188 #22	ENSPPRG00000016992 #22	SCRG1 (ENSPPRG00000015364) #23	SAP30 (ENSPPRG00000015177) #25	ENSPPRG00000015128 #26	GALNT7 (ENSPPRG00000014261) #27	GALNTL6 (ENSPPRG00000012170) #28	ENSPPRG00000010643	AADAT (ENSPPRG00000010311) #29	MFAP3L (ENSPPRG00000009549) #30	HPF1 (ENSPPRG00000008880) #31	CLCN3 (ENSPPRG00000007291) #32	NEK1 (ENSPPRG00000004431) #33	ENSPPRG00000015165	SH3RF1 (ENSPPRG00000014500) #34	CBR4 (ENSPPRG00000013827) #36
leopard	MODERN SPECIES	6	NEIL2 (ENSPPRG00000006001) #9	FDFT1 (ENSPPRG00000005765) #10	CTSB (ENSPPRG00000003402) #11	ENSPPRG00000022162 #12	DEFB135 (ENSPPRG00000002451) #13	DEFB134 (ENSPPRG00000001840)	ENSPPRG00000001731	ENSPPRG00000000391	ADAM29 (ENSPPRG00000021979) #17	GLRA3 (ENSPPRG00000023183) #18	HPGD (ENSPPRG00000023873) #19	CEP44 (ENSPPRG00000024573) #20	FBXO8 (ENSPPRG00000024959) #21	ENSPPRG00000019577	ENSPPRG00000018188 #22	ENSPPRG00000016992 #22	SCRG1 (ENSPPRG00000015364) #23	SAP30 (ENSPPRG00000015177) #25	ENSPPRG00000015128 #26	GALNT7 (ENSPPRG00000014261) #27	GALNTL6 (ENSPPRG00000012170) #28	ENSPPRG00000010643	AADAT (ENSPPRG00000010311) #29	MFAP3L (ENSPPRG00000009549) #30	HPF1 (ENSPPRG00000008880) #31	CLCN3 (ENSPPRG00000007291) #32	NEK1 (ENSPPRG00000004431) #33	ENSPPRG00000015165	SH3RF1 (ENSPPRG00000014500) #34	CBR4 (ENSPPRG00000013827) #36	PALLD (ENSPPRG00000013273) #37
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00390000008918.b #15	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Suina	ANCESTRAL SPECIES	42	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00400000024366	ENSGT00940000166695	ENSGT00940000162672.i #16	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Chacoan peccary	MODERN SPECIES	813	FAM167A (ENSCWAG00000018353)	BLK (ENSCWAG00000018250) #7	GATA4 (ENSCWAG00000018137) #8	NEIL2 (ENSCWAG00000018109) #9	FDFT1 (ENSCWAG00000017819) #10	CTSB (ENSCWAG00000017748) #11	DEFB136 (ENSCWAG00000017727) #12	ENSCWAG00000017708	DEFB134 (ENSCWAG00000017686)	ENSCWAG00000017613	ENSCWAG00000017497 #16	GLRA3 (ENSCWAG00000017343) #18	HPGD (ENSCWAG00000016995) #19	CEP44 (ENSCWAG00000016941) #20	FBXO8 (ENSCWAG00000016913) #21	HAND2 (ENSCWAG00000016898) #22	SCRG1 (ENSCWAG00000016879) #23	SAP30 (ENSCWAG00000016859) #25	HMGB2 (ENSCWAG00000016834) #26	GALNT7 (ENSCWAG00000016687) #27	GALNTL6 (ENSCWAG00000016539) #28	AADAT (ENSCWAG00000016365) #29	MFAP3L (ENSCWAG00000016319) #30	HPF1 (ENSCWAG00000016290) #31	CLCN3 (ENSCWAG00000014882) #32	NEK1 (ENSCWAG00000014571) #33	SH3RF1 (ENSCWAG00000014519) #34	CBR4 (ENSCWAG00000014477) #36	PALLD (ENSCWAG00000013933) #37	DDX60 (ENSCWAG00000013626)	ANXA10 (ENSCWAG00000013515)
Pig	MODERN SPECIES	5	ENSSSCG00000034740	FDFT1 (ENSSSCG00000026044) #10	CTSB (ENSSSCG00000023666) #11	DEFB136 (ENSSSCG00000053332) #12	ENSSSCG00000039911	ENSSSCG00000062644	ENSSSCG00000062227	ENSSSCG00000043237	ENSSSCG00000026659 #16	ADAM29 (ENSSSCG00000053572) #17	GLRA3 (ENSSSCG00000009698) #18	HPGD (ENSSSCG00000009699) #19	ENSSSCG00000034592	CEP44 (ENSSSCG00000032475) #20	FBXO8 (ENSSSCG00000009702) #21	HAND2 (ENSSSCG00000031537) #22	ENSSSCG00000059603	SCRG1 (ENSSSCG00000032048) #23	SAP30 (ENSSSCG00000030118) #25	HMGB2 (ENSSSCG00000009704) #26	GALNT7 (ENSSSCG00000009705) #27	GALNTL6 (ENSSSCG00000021805) #28	ENSSSCG00000042330	ENSSSCG00000042965	ENSSSCG00000031747	AADAT (ENSSSCG00000009708) #29	MFAP3L (ENSSSCG00000009709) #30	ENSSSCG00000009710	HPF1 (ENSSSCG00000009711) #31	CLCN3 (ENSSSCG00000009713) #32	NEK1 (ENSSSCG00000009714) #33
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00390000008918.b #15	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Cetacea	ANCESTRAL SPECIES	9	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00390000001538 #14	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.u #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00390000001538 #14	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.u #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.u #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.u #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Monodontidae	ANCESTRAL SPECIES	31	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00940000169471	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00940000157200.d	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.u #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.b.b	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Narwhal	MODERN SPECIES	6																HAND2 (ENSMMNG00015000033) #22
Beluga whale	MODERN SPECIES	4	MTMR9 (ENSDLEG00000000341)	ENSDLEG00000000315	FAM167A (ENSDLEG00000000301)	BLK (ENSDLEG00000000257) #7	GATA4 (ENSDLEG00000000232) #8	NEIL2 (ENSDLEG00000000202) #9	FDFT1 (ENSDLEG00000000157) #10	CTSB (ENSDLEG00000000111) #11	DEFB136 (ENSDLEG00000000073) #12	ADAM29 (ENSDLEG00000000051) #17	GLRA3 (ENSDLEG00000021638) #18	HPGD (ENSDLEG00000021635) #19	ENSDLEG00000021633	CEP44 (ENSDLEG00000021626) #20	FBXO8 (ENSDLEG00000021623) #21	HAND2 (ENSDLEG00000021620) #22	SCRG1 (ENSDLEG00000021619) #23	SAP30 (ENSDLEG00000021615) #25	HMGB2 (ENSDLEG00000021614) #26	GALNT7 (ENSDLEG00000021605) #27	GALNTL6 (ENSDLEG00000021601) #28	ENSDLEG00000021598	ENSDLEG00000021595 #28	ENSDLEG00000021594	MFAP3L (ENSDLEG00000021588) #30	HPF1 (ENSDLEG00000021583) #31	CLCN3 (ENSDLEG00000021568) #32	ENSDLEG00000021559	NEK1 (ENSDLEG00000021537) #33	SH3RF1 (ENSDLEG00000021519) #34	CBR4 (ENSDLEG00000021515) #36
Vaquita	MODERN SPECIES	17	FAM167A (ENSPSNG00000015201)	BLK (ENSPSNG00000015254) #7	GATA4 (ENSPSNG00000015520) #8	NEIL2 (ENSPSNG00000015735) #9	FDFT1 (ENSPSNG00000015890) #10	CTSB (ENSPSNG00000016156) #11	DEFB136 (ENSPSNG00000016189) #12	ENSPSNG00000016220	ADAM29 (ENSPSNG00000016269) #17	GLRA3 (ENSPSNG00000016363) #18	ENSPSNG00000016596	HPGD (ENSPSNG00000016668) #19	ENSPSNG00000016980	CEP44 (ENSPSNG00000017022) #20	FBXO8 (ENSPSNG00000017072) #21	HAND2 (ENSPSNG00000017116) #22	SCRG1 (ENSPSNG00000017271) #23	SAP30 (ENSPSNG00000017304) #25	HMGB2 (ENSPSNG00000017346) #26	GALNT7 (ENSPSNG00000017394) #27	GALNTL6 (ENSPSNG00000017481) #28	AADAT (ENSPSNG00000017772) #29	MFAP3L (ENSPSNG00000018082) #30	HPF1 (ENSPSNG00000018128) #31	CLCN3 (ENSPSNG00000018195) #32	NEK1 (ENSPSNG00000018414) #33	SH3RF1 (ENSPSNG00000018644) #34	ENSPSNG00000018703	ENSPSNG00000018736 #36	ENSPSNG00000018793	PALLD (ENSPSNG00000018806) #37
Dolphin	MODERN SPECIES	3926																HAND2 (ENSTTRG00000001365) #22
Sperm whale	MODERN SPECIES	20	MTMR9 (ENSPCTG00005002780)	ENSPCTG00005002808	ENSPCTG00005002821	ENSPCTG00005002826	GATA4 (ENSPCTG00005002833) #8	ENSPCTG00005002841 #10	DEFB136 (ENSPCTG00005002845) #12	ENSPCTG00005002850	ENSPCTG00005002852 #14	ADAM29 (ENSPCTG00005002859) #17	GLRA3 (ENSPCTG00005002886) #18	HPGD (ENSPCTG00005002951) #19	CEP44 (ENSPCTG00005003011) #20	FBXO8 (ENSPCTG00005003064) #21	ENSPCTG00005003074	HAND2 (ENSPCTG00005003086) #22	ENSPCTG00005003097	SCRG1 (ENSPCTG00005003107) #23	SAP30 (ENSPCTG00005003116) #25	ENSPCTG00005003135 #26	GALNT7 (ENSPCTG00005003147) #27	GALNTL6 (ENSPCTG00005003168) #28	ENSPCTG00005003191	AADAT (ENSPCTG00005003210) #29	ENSPCTG00005003280	MFAP3L (ENSPCTG00005003291) #30	HPF1 (ENSPCTG00005003301) #31	CLCN3 (ENSPCTG00005003330) #32	NEK1 (ENSPCTG00005003444) #33	SH3RF1 (ENSPCTG00005003650) #34	CBR4 (ENSPCTG00005003665) #36
Blue whale	MODERN SPECIES	17	MTMR9 (ENSBMSG00010012046)	ENSBMSG00010012032	FAM167A (ENSBMSG00010012020)	BLK (ENSBMSG00010012003) #7	GATA4 (ENSBMSG00010011979) #8	NEIL2 (ENSBMSG00010011964) #9	FDFT1 (ENSBMSG00010011948) #10	CTSB (ENSBMSG00010011929) #11	DEFB136 (ENSBMSG00010011919) #12	ENSBMSG00010011905 #14	ADAM29 (ENSBMSG00010011886) #17	GLRA3 (ENSBMSG00010011860) #18	HPGD (ENSBMSG00010011777) #19	CEP44 (ENSBMSG00010011744) #20	FBXO8 (ENSBMSG00010011725) #21	HAND2 (ENSBMSG00010011710) #22	SCRG1 (ENSBMSG00010011704) #23	SAP30 (ENSBMSG00010011690) #25	ENSBMSG00010011680 #26	GALNT7 (ENSBMSG00010011669) #27	GALNTL6 (ENSBMSG00010011646) #28	AADAT (ENSBMSG00010011616) #29	MFAP3L (ENSBMSG00010011570) #30	ENSBMSG00010011562	HPF1 (ENSBMSG00010011546) #31	CLCN3 (ENSBMSG00010011511) #32	NEK1 (ENSBMSG00010011444) #33	SH3RF1 (ENSBMSG00010011397) #34	CBR4 (ENSBMSG00010011378) #36	PALLD (ENSBMSG00010011356) #37	ENSBMSG00010011345 #37
Pecora	ANCESTRAL SPECIES	36	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00940000169471	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000160623	ENSGT00940000156081
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00940000169471	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000160623
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000160623
Bovinae	ANCESTRAL SPECIES	39	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j.a.b #16	ENSGT00940000162672.j.b #16	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Bos	ANCESTRAL SPECIES	10	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j.a.b #16	ENSGT00940000162672.j.b.b #16	ENSGT00940000162672.j.b.a #16	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000014876.x.b #31	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36
Bos_a	ANCESTRAL SPECIES	50	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j.b.b #16	ENSGT00940000162672.j.b.a #16	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000014876.w #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000160623
Domestic yak	MODERN SPECIES	26	GATA4 (ENSBGRG00000002675) #8	FDFT1 (ENSBGRG00000002753) #10	CTSB (ENSBGRG00000002892) #11	DEFB136 (ENSBGRG00000002971) #12	DEFB134 (ENSBGRG00000002981)	ENSBGRG00000002992	ENSBGRG00000003045 #14	ENSBGRG00000010497 #16	ENSBGRG00000010596 #16	GLRA3 (ENSBGRG00000010756) #18	HPGD (ENSBGRG00000011030) #19	ENSBGRG00000011615	ENSBGRG00000011643	CEP44 (ENSBGRG00000011688) #20	FBXO8 (ENSBGRG00000011901) #21	ENSBGRG00000011973 #22	ENSBGRG00000012036	SCRG1 (ENSBGRG00000012051) #23	SAP30 (ENSBGRG00000012097) #25	HMGB2 (ENSBGRG00000012160) #26	GALNT7 (ENSBGRG00000012232) #27	GALNTL6 (ENSBGRG00000012548) #28	ENSBGRG00000012750 #28	ZNF770 (ENSBGRG00000012811)	ENSBGRG00000012868 #29	ENSBGRG00000013531 #29	MFAP3L (ENSBGRG00000014155) #30	ENSBGRG00000014201 #31	CLCN3 (ENSBGRG00000014279) #32	NEK1 (ENSBGRG00000014664) #33	SH3RF1 (ENSBGRG00000015017) #34
Wild yak	MODERN SPECIES	472									ENSBMUG00000023047 #16	ENSBMUG00000023055 #16	ENSBMUG00000023066 #17	GLRA3 (ENSBMUG00000023088) #18	HPGD (ENSBMUG00000023122) #19	CEP44 (ENSBMUG00000023137) #20	FBXO8 (ENSBMUG00000023141) #21	HAND2 (ENSBMUG00000023170) #22
Bos_b	ANCESTRAL SPECIES	3	ENSGT00400000024366	ENSGT00530000064429 #13	ENSGT00940000169471	ENSGT00390000001538 #14	ENSGT00940000162672.j.a.b #16	ENSGT00940000162672.j.b.b #16	ENSGT00940000162672.j.b.a #16	ENSGT00940000162672.i #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.s #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Cow	MODERN SPECIES	27	FDFT1 (ENSBTAG00000012432) #10	CTSB (ENSBTAG00000012442) #11	DEFB136 (ENSBTAG00000051632) #12	DEFB134 (ENSBTAG00000054255)	ENSBTAG00000050360 #13	ENSBTAG00000039873 #16	ENSBTAG00000008678 #16	ENSBTAG00000035768 #16	ENSBTAG00000025954 #16	ENSBTAG00000053818 #17	GLRA3 (ENSBTAG00000019732) #18	HPGD (ENSBTAG00000025942) #19	ENSBTAG00000049148	CEP44 (ENSBTAG00000020055) #20	FBXO8 (ENSBTAG00000006715) #21	HAND2 (ENSBTAG00000044123) #22	SCRG1 (ENSBTAG00000012535) #23	SAP30 (ENSBTAG00000015578) #25	HMGB2 (ENSBTAG00000015101) #26	GALNT7 (ENSBTAG00000016845) #27	GALNTL6 (ENSBTAG00000035007) #28	ENSBTAG00000048627	ENSBTAG00000053219	AADAT (ENSBTAG00000010326) #29	AADAT (ENSBTAG00000050967) #29	MFAP3L (ENSBTAG00000019539) #30	ENSBTAG00000035293	HPF1 (ENSBTAG00000020132) #31	CLCN3 (ENSBTAG00000020130) #32	NEK1 (ENSBTAG00000026915) #33	SH3RF1 (ENSBTAG00000001508) #34
Hybrid Bos Indicus	MODERN SPECIES	27	CTSB (ENSBIXG00005029055) #11	DEFB136 (ENSBIXG00005029063) #12	DEFB134 (ENSBIXG00005029069)	ENSBIXG00005029075	ENSBIXG00005001967 #14	ENSBIXG00005029099 #16	ENSBIXG00005001909 #16	ENSBIXG00005001880 #16	ENSBIXG00005001827 #16	GLRA3 (ENSBIXG00005029159) #18	HPGD (ENSBIXG00005001731) #19	ENSBIXG00005029194	ENSBIXG00005005240	CEP44 (ENSBIXG00005005262) #20	FBXO8 (ENSBIXG00005030957) #21	HAND2 (ENSBIXG00005030942) #22	ENSBIXG00005030937	SCRG1 (ENSBIXG00005030931) #23	SAP30 (ENSBIXG00005030926) #25	ENSBIXG00005030919 #26	GALNT7 (ENSBIXG00005030901) #27	ENSBIXG00005030886	GALNTL6 (ENSBIXG00005030879) #28	ENSBIXG00005030838 #29	ENSBIXG00005030820 #29	MFAP3L (ENSBIXG00005030798) #30	ENSBIXG00005030781	ENSBIXG00005030777	ENSBIXG00005030766 #31	CLCN3 (ENSBIXG00005030745) #32	NEK1 (ENSBIXG00005030686) #33
American bison	MODERN SPECIES	3066	GATA4 (ENSBBBG00000024699) #8	ENSBBBG00000006489	FDFT1 (ENSBBBG00000006569) #10	CTSB (ENSBBBG00000025022) #11	DEFB136 (ENSBBBG00000025029) #12	DEFB134 (ENSBBBG00000006618)	ENSBBBG00000008072 #13	ENSBBBG00000006625 #14	ENSBBBG00000025066 #16	ENSBBBG00000025105 #16	ENSBBBG00000008079 #16	GLRA3 (ENSBBBG00000025201) #18	HPGD (ENSBBBG00000025316) #19	CEP44 (ENSBBBG00000025437) #20	FBXO8 (ENSBBBG00000008272) #21	ENSBBBG00000010088 #22	SCRG1 (ENSBBBG00000010091) #23	SAP30 (ENSBBBG00000010093) #25	HMGB2 (ENSBBBG00000010098) #26	GALNT7 (ENSBBBG00000008485) #27	GALNTL6 (ENSBBBG00000010110) #28
Caprinae	ANCESTRAL SPECIES	43	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00400000024366	ENSGT00530000064429 #13	ENSGT00390000001538 #14	ENSGT00940000162672.j #16	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.q.a.a #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.f #29	ENSGT00390000004594.e #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000160623
Rambouillet Sheep	MODERN SPECIES	11	BLK (ENSOARG00020007821) #7	GATA4 (ENSOARG00020007935) #8	NEIL2 (ENSOARG00020008033) #9	FDFT1 (ENSOARG00020008081) #10	CTSB (ENSOARG00020008336) #11	DEFB136 (ENSOARG00020008399) #12	DEFB134 (ENSOARG00020008424)	DEFB135 (ENSOARG00020008458) #13	ENSOARG00020008498 #14	ENSOARG00020008537 #16	ADAM29 (ENSOARG00020008583) #17	GLRA3 (ENSOARG00020008815) #18	ENSOARG00020009188	CEP44 (ENSOARG00020009221) #20	FBXO8 (ENSOARG00020009418) #21	HAND2 (ENSOARG00020009532) #22	SCRG1 (ENSOARG00020009556) #23	SAP30 (ENSOARG00020009592) #25	GALNT7 (ENSOARG00020009661) #27	ENSOARG00020010317 #26	GALNTL6 (ENSOARG00020010374) #28	ENSOARG00020010526	ENSOARG00020010640 #29	ENSOARG00020010802	ENSOARG00020010854 #29	MFAP3L (ENSOARG00020011097) #30	HPF1 (ENSOARG00020011167) #31	CLCN3 (ENSOARG00020011269) #32	NEK1 (ENSOARG00020011937) #33	SH3RF1 (ENSOARG00020013929) #34	CBR4 (ENSOARG00020014077) #36
Goat	MODERN SPECIES	27	MTMR9 (ENSCHIG00000011307)	ENSCHIG00000026057	FAM167A (ENSCHIG00000015935)	BLK (ENSCHIG00000023279) #7	GATA4 (ENSCHIG00000009574) #8	NEIL2 (ENSCHIG00000024777) #9	FDFT1 (ENSCHIG00000024342) #10	CTSB (ENSCHIG00000025426) #11	DEFB134 (ENSCHIG00000014361)	ENSCHIG00000008513 #13	ENSCHIG00000018040	GLRA3 (ENSCHIG00000011485) #18	HPGD (ENSCHIG00000024739) #19	CEP44 (ENSCHIG00000026241) #20	FBXO8 (ENSCHIG00000024422) #21	HAND2 (ENSCHIG00000012433) #22	SCRG1 (ENSCHIG00000020578) #23	SAP30 (ENSCHIG00000016394) #25	ENSCHIG00000011113 #26	GALNT7 (ENSCHIG00000010238) #27	GALNTL6 (ENSCHIG00000010541) #28	ENSCHIG00000026171 #28	ENSCHIG00000010341	ENSCHIG00000009448 #29	ENSCHIG00000025032 #29	MFAP3L (ENSCHIG00000012062) #30	HPF1 (ENSCHIG00000011299) #31	CLCN3 (ENSCHIG00000019301) #32	NEK1 (ENSCHIG00000021097) #33	SH3RF1 (ENSCHIG00000023360) #34	CBR4 (ENSCHIG00000026304) #36
Siberian musk deer	MODERN SPECIES	82	FAM167A (ENSMMSG00000002789)	BLK (ENSMMSG00000002808) #7	GATA4 (ENSMMSG00000002852) #8	NEIL2 (ENSMMSG00000002932) #9	FDFT1 (ENSMMSG00000002978) #10	CTSB (ENSMMSG00000003048) #11	DEFB134 (ENSMMSG00000003082)	ENSMMSG00000000055	ENSMMSG00000000068 #14	ENSMMSG00000000086	ENSMMSG00000000126 #16	GLRA3 (ENSMMSG00000000190) #18	HPGD (ENSMMSG00000000283) #19	CEP44 (ENSMMSG00000000483) #20	FBXO8 (ENSMMSG00000000517) #21	HAND2 (ENSMMSG00000000546) #22	SCRG1 (ENSMMSG00000000558) #23	SAP30 (ENSMMSG00000000567) #25	HMGB2 (ENSMMSG00000000582) #26	GALNT7 (ENSMMSG00000000614) #27	GALNTL6 (ENSMMSG00000000651) #28
Camelidae	ANCESTRAL SPECIES	47	ENSGT00940000159864 #7	ENSGT00940000158349 #8	ENSGT00940000153230.B #9	ENSGT00390000016034 #10	ENSGT00940000158680 #11	ENSGT00390000001862 #12	ENSGT00530000064429 #13	ENSGT00400000024366	ENSGT00940000168825	ENSGT00390000001538 #14	ENSGT00940000162672.i #16	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00740000117098	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT01000000217744	ENSGT00940000153441.a.a #37
Arabian camel	MODERN SPECIES	24	FDFT1 (ENSCDRG00005010723) #10	CTSB (ENSCDRG00005010951) #11	DEFB136 (ENSCDRG00005011102) #12	DEFB135 (ENSCDRG00005011137) #13	DEFB134 (ENSCDRG00005011178)	ENSCDRG00005011200	ENSCDRG00005011250 #14	ENSCDRG00005011287 #15	ENSCDRG00005011307 #16	ENSCDRG00005011371 #16	GLRA3 (ENSCDRG00005011644) #18	ENSCDRG00005011751	ENSCDRG00005011773 #19	CEP44 (ENSCDRG00005011812) #20	FBXO8 (ENSCDRG00005011875) #21	ENSCDRG00005011915 #22	SCRG1 (ENSCDRG00005011953) #23	SAP30 (ENSCDRG00005011999) #25	HMGB2 (ENSCDRG00005012061) #26	GALNT7 (ENSCDRG00005012127) #27	GALNTL6 (ENSCDRG00005012358) #28	ENSCDRG00005012415 #28	ENSCDRG00005012472	AADAT (ENSCDRG00005012493) #29	MFAP3L (ENSCDRG00005012627) #30	HPF1 (ENSCDRG00005012692) #31	CLCN3 (ENSCDRG00005012765) #32	NEK1 (ENSCDRG00005013105) #33	SH3RF1 (ENSCDRG00005013382) #34	CBR4 (ENSCDRG00005013423) #36	ENSCDRG00005013513
Alpaca	MODERN SPECIES	3512																HAND2 (ENSVPAG00000006724) #22	SCRG1 (ENSVPAG00000006722) #23	SAP30 (ENSVPAG00000006720) #25	ENSVPAG00000006716 #27
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Tree shrew	MODERN SPECIES	7910																HAND2 (ENSTBEG00000007591) #22	SCRG1 (ENSTBEG00000007498) #23	ENSTBEG00000006720
Glires	ANCESTRAL SPECIES	8	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Lagomorpha	ANCESTRAL SPECIES	32	ENSGT00410000025556.a.a.a.a	ENSGT01030000234566.e.b.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Rabbit	MODERN SPECIES	11	ENSOCUG00000012211	ENSOCUG00000029741	ASB5 (ENSOCUG00000012592)	SPATA4 (ENSOCUG00000013569)	WDR17 (ENSOCUG00000015110)	GPM6A (ENSOCUG00000007631)	ENSOCUG00000037142	ENSOCUG00000007714 #17	ENSOCUG00000013889 #17	GLRA3 (ENSOCUG00000017638) #18	HPGD (ENSOCUG00000016289) #19	ENSOCUG00000026425	CEP44 (ENSOCUG00000013963) #20	FBXO8 (ENSOCUG00000008888) #21	ENSOCUG00000023773	ENSOCUG00000016256 #22	SCRG1 (ENSOCUG00000000616) #23	SAP30 (ENSOCUG00000010418) #25	ENSOCUG00000000074 #26	GALNT7 (ENSOCUG00000011080) #27	ENSOCUG00000031901	ENSOCUG00000038954	GALNTL6 (ENSOCUG00000000888) #28	AADAT (ENSOCUG00000011526) #29	MFAP3L (ENSOCUG00000011514) #30	ENSOCUG00000036380	HPF1 (ENSOCUG00000026923) #31	CLCN3 (ENSOCUG00000006220) #32	NEK1 (ENSOCUG00000016756) #33	ENSOCUG00000031550	ENSOCUG00000038117
Pika	MODERN SPECIES	173																HAND2 (ENSOPRG00000010154) #22	ENSOPRG00000010149	ENSOPRG00000010140 #25	HMGB2 (ENSOPRG00000010124) #26	GALNT7 (ENSOPRG00000010100) #27
Rodentia	ANCESTRAL SPECIES	21	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Muroidea	ANCESTRAL SPECIES	26	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Upper Galilee mountains blind mole rat	MODERN SPECIES	1369	Tenm3 (ENSNGAG00000010258)	Aga (ENSNGAG00000020177)	ENSNGAG00000019639	Vegfc (ENSNGAG00000012309)	Spcs3 (ENSNGAG00000011645)	Asb5 (ENSNGAG00000011209)	Spata4 (ENSNGAG00000010645)	ENSNGAG00000010335	ENSNGAG00000009230	ENSNGAG00000006217	Gpm6a (ENSNGAG00000000512)	Glra3 (ENSNGAG00000015923) #18	Hpgd (ENSNGAG00000008721) #19	ENSNGAG00000023339 #20	Fbxo8 (ENSNGAG00000022900) #21	Hand2 (ENSNGAG00000022198) #22	Scrg1 (ENSNGAG00000021892) #23	Sap30 (ENSNGAG00000011733) #25	ENSNGAG00000008871 #26	Galnt7 (ENSNGAG00000016042) #27	Galntl6 (ENSNGAG00000013905) #28	ENSNGAG00000013131 #28
Muroidea_A	ANCESTRAL SPECIES	26	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Cricetidae	ANCESTRAL SPECIES	23	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Cricetinae	ANCESTRAL SPECIES	48											ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Chinese hamster chok1gshd	MODERN SPECIES	184									ENSCGRG00001013309	Adam29 (ENSCGRG00001014076) #17	Glra3 (ENSCGRG00001015150) #18	Hpgd (ENSCGRG00001016299) #19	Cep44 (ENSCGRG00001017213) #20	Fbxo8 (ENSCGRG00001019818) #21	ENSCGRG00001020251	Hand2 (ENSCGRG00001021215) #22	Scrg1 (ENSCGRG00001000369) #23	Sap30 (ENSCGRG00001002497) #25	Hmgb2 (ENSCGRG00001003816) #26	Galnt7 (ENSCGRG00001010057) #27	Galntl6 (ENSCGRG00001016834) #28	ENSCGRG00001018787	Aadat (ENSCGRG00001015537) #29	Mfap3l (ENSCGRG00001017293) #30	Hpf1 (ENSCGRG00001019103) #31	Clcn3 (ENSCGRG00001022469) #32	Nek1 (ENSCGRG00001014900) #33	Sh3rf1 (ENSCGRG00001006240) #34	Cbr4 (ENSCGRG00001008452) #36	Palld (ENSCGRG00001009316) #37	Ddx60 (ENSCGRG00001018201)
Golden Hamster	MODERN SPECIES	669												Glra3 (ENSMAUG00000011925) #18	Hpgd (ENSMAUG00000010891) #19	Cep44 (ENSMAUG00000011204) #20	Fbxo8 (ENSMAUG00000012436) #21	Hand2 (ENSMAUG00000012686) #22	Scrg1 (ENSMAUG00000013088) #23	Sap30 (ENSMAUG00000013191) #25	Hmgb2 (ENSMAUG00000013441) #26	Galnt7 (ENSMAUG00000011496) #27	ENSMAUG00000012103 #28	ENSMAUG00000015802 #28	ENSMAUG00000012405 #28	BC030500 (ENSMAUG00000013365)	ENSMAUG00000013989	Aadat (ENSMAUG00000015707) #29	Mfap3l (ENSMAUG00000014241) #30	Hpf1 (ENSMAUG00000014126) #31	Clcn3 (ENSMAUG00000015301) #32	ENSMAUG00000018140 #33	Sh3rf1 (ENSMAUG00000000082) #34
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Prairie vole	MODERN SPECIES	111												Glra3 (ENSMOCG00000003565) #18	Hpgd (ENSMOCG00000001799) #19	ENSMOCG00000009906 #20	Fbxo8 (ENSMOCG00000014976) #21	Hand2 (ENSMOCG00000008122) #22	Scrg1 (ENSMOCG00000014573) #23	Sap30 (ENSMOCG00000018678) #25	Galnt7 (ENSMOCG00000000949) #27	Galntl6 (ENSMOCG00000004594) #28	Aadat (ENSMOCG00000015438) #29	Mfap3l (ENSMOCG00000010979) #30	ENSMOCG00000001582	Hpf1 (ENSMOCG00000004147) #31	Clcn3 (ENSMOCG00000003227) #32	ENSMOCG00000008093 #33
Northern American deer mouse	MODERN SPECIES	8	Neil3 (ENSPEMG00000016548) ##9	Vegfc (ENSPEMG00000017806)	Spcs3 (ENSPEMG00000029258)	Asb5 (ENSPEMG00000000734)	Spata4 (ENSPEMG00000006534)	Wdr17 (ENSPEMG00000012332)	Gpm6a (ENSPEMG00000029351)	ENSPEMG00000024737	ENSPEMG00000028325	Adam29 (ENSPEMG00000013490) #17	Glra3 (ENSPEMG00000028664) #18	Hpgd (ENSPEMG00000000284) #19	Cep44 (ENSPEMG00000002959) #20	Fbxo8 (ENSPEMG00000009379) #21	ENSPEMG00000029214	Hand2 (ENSPEMG00000010233) #22	ENSPEMG00000014184	Scrg1 (ENSPEMG00000010744) #23	Sap30 (ENSPEMG00000029866) #25	Hmgb2 (ENSPEMG00000013378) #26	Galnt7 (ENSPEMG00000003586) #27	Galntl6 (ENSPEMG00000011290) #28	ENSPEMG00000013604	ENSPEMG00000030181	Aadat (ENSPEMG00000018250) #29	ENSPEMG00000021022	Mfap3l (ENSPEMG00000025834) #30	Hpf1 (ENSPEMG00000016055) #31	Clcn3 (ENSPEMG00000008384) #32	Nek1 (ENSPEMG00000012961) #33	Sh3rf1 (ENSPEMG00000015623) #34
Murinae	ANCESTRAL SPECIES	23	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Mus	ANCESTRAL SPECIES	6	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Mus_A	ANCESTRAL SPECIES	8	ENSGT01030000234566.e.b.a.a	ENSGT00900000143444	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00860000135634	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT01030000234566.e.b.a.a	ENSGT00900000143444	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00860000135634	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT01030000234566.e.b.a.a	ENSGT00900000143444	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00860000135825	ENSGT00860000135634	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Steppe mouse	MODERN SPECIES	65											Adam29 (ENSMSIG00000003417) #17	Glra3 (ENSMSIG00000003370) #18	Hpgd (ENSMSIG00000003344) #19	Cep44 (ENSMSIG00000003325) #20	Fbxo8 (ENSMSIG00000003282) #21	Hand2 (ENSMSIG00000003249) #22	ENSMSIG00000003220 #23	Sap30 (ENSMSIG00000003196) #25	Galnt7 (ENSMSIG00000003033) #27	Galntl6 (ENSMSIG00000002944) #28	BC030500 (ENSMSIG00000002915)
spretus	MODERN SPECIES	17	Tenm3 (MGP_SPRETEiJ_G0032164)	MGP_SPRETEiJ_G0032165	Aga (MGP_SPRETEiJ_G0032166)	Neil3 (MGP_SPRETEiJ_G0032167) ##9	Vegfc (MGP_SPRETEiJ_G0032168)	Spcs3 (MGP_SPRETEiJ_G0032169)	Asb5 (MGP_SPRETEiJ_G0032170)	Spata4 (MGP_SPRETEiJ_G0032171)	Wdr17 (MGP_SPRETEiJ_G0032172)	Gpm6a (MGP_SPRETEiJ_G0032173)	Adam29 (MGP_SPRETEiJ_G0032174) #17	Glra3 (MGP_SPRETEiJ_G0032175) #18	Hpgd (MGP_SPRETEiJ_G0032176) #19	Cep44 (MGP_SPRETEiJ_G0032177) #20	Fbxo8 (MGP_SPRETEiJ_G0032178) #21	Hand2 (MGP_SPRETEiJ_G0032179) #22	Scrg1 (MGP_SPRETEiJ_G0032180) #23	Sap30 (MGP_SPRETEiJ_G0032181) #25	MGP_SPRETEiJ_G0032182 #26	Galnt7 (MGP_SPRETEiJ_G0032183) #27	Galntl6 (MGP_SPRETEiJ_G0032184) #28	BC030500 (MGP_SPRETEiJ_G0032185)	Gm10283 (MGP_SPRETEiJ_G0032186)	Aadat (MGP_SPRETEiJ_G0032187) #29	Mfap3l (MGP_SPRETEiJ_G0032188) #30	Hpf1 (MGP_SPRETEiJ_G0032189) #31	Clcn3 (MGP_SPRETEiJ_G0032190) #32	Nek1 (MGP_SPRETEiJ_G0032191) #33	Sh3rf1 (MGP_SPRETEiJ_G0032192) #34	Cbr4 (MGP_SPRETEiJ_G0032193) #36	Palld (MGP_SPRETEiJ_G0032194) #37
Mouse	MODERN SPECIES	17	Dctd (ENSMUSG00000031562)	Tenm3 (ENSMUSG00000031561)	Aga (ENSMUSG00000031521)	Neil3 (ENSMUSG00000039396) ##9	Vegfc (ENSMUSG00000031520)	Spcs3 (ENSMUSG00000054408)	Asb5 (ENSMUSG00000031519)	Spata4 (ENSMUSG00000031518)	Wdr17 (ENSMUSG00000039375)	Gpm6a (ENSMUSG00000031517)	Adam29 (ENSMUSG00000046258) #17	Glra3 (ENSMUSG00000038257) #18	Hpgd (ENSMUSG00000031613) #19	Cep44 (ENSMUSG00000038215) #20	Fbxo8 (ENSMUSG00000038206) #21	Hand2 (ENSMUSG00000038193) #22	Scrg1 (ENSMUSG00000031610) #23	Sap30 (ENSMUSG00000031609) #25	Hmgb2 (ENSMUSG00000054717) #26	Galnt7 (ENSMUSG00000031608) #27	Galntl6 (ENSMUSG00000096914) #28	BC030500 (ENSMUSG00000049946)	Gm10283 (ENSMUSG00000070023)	Aadat (ENSMUSG00000057228) #29	Mfap3l (ENSMUSG00000031647) #30	Hpf1 (ENSMUSG00000038005) #31	Clcn3 (ENSMUSG00000004319) #32	Nek1 (ENSMUSG00000031644) #33	Sh3rf1 (ENSMUSG00000031642) #34	Cbr4 (ENSMUSG00000031641) #36	Palld (ENSMUSG00000058056) #37
Ryukyu mouse	MODERN SPECIES	17	Tenm3 (MGP_CAROLIEiJ_G0031049)	MGP_CAROLIEiJ_G0031050	Aga (MGP_CAROLIEiJ_G0031051)	Neil3 (MGP_CAROLIEiJ_G0031052) ##9	Vegfc (MGP_CAROLIEiJ_G0031053)	Spcs3 (MGP_CAROLIEiJ_G0031054)	Asb5 (MGP_CAROLIEiJ_G0031055)	Spata4 (MGP_CAROLIEiJ_G0031056)	Wdr17 (MGP_CAROLIEiJ_G0031057)	Gpm6a (MGP_CAROLIEiJ_G0031058)	MGP_CAROLIEiJ_G0031059 #17	Glra3 (MGP_CAROLIEiJ_G0031060) #18	Hpgd (MGP_CAROLIEiJ_G0031061) #19	Cep44 (MGP_CAROLIEiJ_G0031062) #20	Fbxo8 (MGP_CAROLIEiJ_G0031063) #21	Hand2 (MGP_CAROLIEiJ_G0031064) #22	Scrg1 (MGP_CAROLIEiJ_G0031065) #23	Sap30 (MGP_CAROLIEiJ_G0031066) #25	Hmgb2 (MGP_CAROLIEiJ_G0031067) #26	Galnt7 (MGP_CAROLIEiJ_G0031068) #27	Galntl6 (MGP_CAROLIEiJ_G0031069) #28	MGP_CAROLIEiJ_G0031070	MGP_CAROLIEiJ_G0031071	Aadat (MGP_CAROLIEiJ_G0031072) #29	Mfap3l (MGP_CAROLIEiJ_G0031073) #30	Hpf1 (MGP_CAROLIEiJ_G0031074) #31	Clcn3 (MGP_CAROLIEiJ_G0031075) #32	Nek1 (MGP_CAROLIEiJ_G0031076) #33	Sh3rf1 (MGP_CAROLIEiJ_G0031077) #34	Cbr4 (MGP_CAROLIEiJ_G0031078) #36	Palld (MGP_CAROLIEiJ_G0031079) #37
Shrew mouse	MODERN SPECIES	10	Dctd (MGP_PahariEiJ_G0021514)	Tenm3 (MGP_PahariEiJ_G0021515)	Aga (MGP_PahariEiJ_G0021517)	Neil3 (MGP_PahariEiJ_G0021518) ##9	Vegfc (MGP_PahariEiJ_G0021519)	Spcs3 (MGP_PahariEiJ_G0021520)	Asb5 (MGP_PahariEiJ_G0021521)	Spata4 (MGP_PahariEiJ_G0021522)	Wdr17 (MGP_PahariEiJ_G0021523)	Gpm6a (MGP_PahariEiJ_G0021524)	Adam29 (MGP_PahariEiJ_G0021525) #17	Glra3 (MGP_PahariEiJ_G0021526) #18	Hpgd (MGP_PahariEiJ_G0021527) #19	MGP_PahariEiJ_G0021528 #20	Fbxo8 (MGP_PahariEiJ_G0021529) #21	Hand2 (MGP_PahariEiJ_G0021530) #22	Scrg1 (MGP_PahariEiJ_G0021531) #23	Sap30 (MGP_PahariEiJ_G0021532) #25	Hmgb2 (MGP_PahariEiJ_G0021533) #26	Galnt7 (MGP_PahariEiJ_G0021534) #27	Galntl6 (MGP_PahariEiJ_G0021535) #28	MGP_PahariEiJ_G0021536	Aadat (MGP_PahariEiJ_G0021537) #29	Mfap3l (MGP_PahariEiJ_G0021538) #30	Hpf1 (MGP_PahariEiJ_G0021539) #31	Clcn3 (MGP_PahariEiJ_G0021540) #32	Nek1 (MGP_PahariEiJ_G0021541) #33	Sh3rf1 (MGP_PahariEiJ_G0021542) #34	Cbr4 (MGP_PahariEiJ_G0021543) #36	Palld (MGP_PahariEiJ_G0021544) #37	MGP_PahariEiJ_G0021545
Rat	MODERN SPECIES	7	ENSRNOG00000070297	Gpm6a (ENSRNOG00000010731)	Adam21 (ENSRNOG00000059297)	ENSRNOG00000070639	AABR07024442.1 (ENSRNOG00000046720)	AABR07024439.1 (ENSRNOG00000046132)	ENSRNOG00000067321	ENSRNOG00000063491	Glra3 (ENSRNOG00000049792) #18	Hmgb1 (ENSRNOG00000058908)	Hpgd (ENSRNOG00000010610) #19	Cep44 (ENSRNOG00000010566) #20	ENSRNOG00000062690	Fbxo8 (ENSRNOG00000010502) #21	LOC103694242 (ENSRNOG00000007402)	Hand2 (ENSRNOG00000060448) #22	ENSRNOG00000069425	Scrg1 (ENSRNOG00000069516) #23	Sap30 (ENSRNOG00000013218) #25	Hmgb2 (ENSRNOG00000013167) #26	Galnt7 (ENSRNOG00000012037) #27	Galntl6 (ENSRNOG00000067282) #28	Hmgn2-ps4 (ENSRNOG00000066721)	ENSRNOG00000063109	Aadat (ENSRNOG00000011861) #29	Mfap3l (ENSRNOG00000011775) #30	Ppia-ps13 (ENSRNOG00000062799)	LOC100360260 (ENSRNOG00000060395)	Hpf1 (ENSRNOG00000011293) #31	Clcn3 (ENSRNOG00000010682) #32	Nek1 (ENSRNOG00000010418) #33
Lesser Egyptian jerboa	MODERN SPECIES	62	Vegfc (ENSJJAG00000023820)	ENSJJAG00000005362	Asb5 (ENSJJAG00000009349)	Spata4 (ENSJJAG00000000204)	ENSJJAG00000018815	ENSJJAG00000014807	ENSJJAG00000011666	ENSJJAG00000010169	ENSJJAG00000006944	Gpm6a (ENSJJAG00000020024)	Glra3 (ENSJJAG00000011425) #18	Hpgd (ENSJJAG00000013898) #19	Cep44 (ENSJJAG00000023804) #20	Fbxo8 (ENSJJAG00000000446) #21	ENSJJAG00000010023	Hand2 (ENSJJAG00000015565) #22	ENSJJAG00000010120	Scrg1 (ENSJJAG00000014808) #23	Sap30 (ENSJJAG00000018559) #25	Hmgb2 (ENSJJAG00000009984) #26	Galnt7 (ENSJJAG00000015089) #27	Galntl6 (ENSJJAG00000020664) #28	Aadat (ENSJJAG00000024375) #29	Mfap3l (ENSJJAG00000021487) #30	Hpf1 (ENSJJAG00000011349) #31	Clcn3 (ENSJJAG00000000856) #32	Nek1 (ENSJJAG00000020556) #33	ENSJJAG00000021393	Sh3rf1 (ENSJJAG00000021488) #34	ENSJJAG00000006073	Cbr4 (ENSJJAG00000015283) #36
Kangaroo rat	MODERN SPECIES	323	ENSDORG00000010593	Tenm3 (ENSDORG00000007981)	Aga (ENSDORG00000014411)	ENSDORG00000002876	Vegfc (ENSDORG00000009540)	ENSDORG00000010006	Asb5 (ENSDORG00000009298)	Spata4 (ENSDORG00000002778)	ENSDORG00000026217	ENSDORG00000023707	Gpm6a (ENSDORG00000011732)	Glra3 (ENSDORG00000015747) #18	Hpgd (ENSDORG00000011326) #19	ENSDORG00000025276 #20	Fbxo8 (ENSDORG00000010989) #21	Hand2 (ENSDORG00000007304) #22	Scrg1 (ENSDORG00000023274) #23	Sap30 (ENSDORG00000025744) #25	Hmgb2 (ENSDORG00000024163) #26	ENSDORG00000026618 #27	ENSDORG00000026508	Galntl6 (ENSDORG00000011826) #28	Aadat (ENSDORG00000005370) #29	Mfap3l (ENSDORG00000024753) #30	ENSDORG00000029352 #31	Clcn3 (ENSDORG00000010932) #32	ENSDORG00000025576 #33	ENSDORG00000024191	Sh3rf1 (ENSDORG00000004433) #34	Cbr4 (ENSDORG00000004432) #36	Palld (ENSDORG00000004430) #37
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460.v #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460.v #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Marmotini_b	ANCESTRAL SPECIES	161			ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460.v #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Squirrel	MODERN SPECIES	116	ENSSTOG00000025042	AGA (ENSSTOG00000011875)	NEIL3 (ENSSTOG00000016245) ##9	VEGFC (ENSSTOG00000002297)	SPCS3 (ENSSTOG00000013678)	ASB5 (ENSSTOG00000026375)	SPATA4 (ENSSTOG00000013667)	WDR17 (ENSSTOG00000013640)	GPM6A (ENSSTOG00000023117)	ADAM29 (ENSSTOG00000025632) #17	GLRA3 (ENSSTOG00000005897) #18	HPGD (ENSSTOG00000025253) #19	ENSSTOG00000030307	CEP44 (ENSSTOG00000012395) #20	FBXO8 (ENSSTOG00000012389) #21	HAND2 (ENSSTOG00000023020) #22	ENSSTOG00000021612	SCRG1 (ENSSTOG00000011513) #23	SAP30 (ENSSTOG00000027418) #25	HMGB2 (ENSSTOG00000023980) #26	GALNT7 (ENSSTOG00000021543) #27	ENSSTOG00000009469	GALNTL6 (ENSSTOG00000009474) #28	AADAT (ENSSTOG00000021624) #29	MFAP3L (ENSSTOG00000023444) #30	ENSSTOG00000001481 #31	CLCN3 (ENSSTOG00000001473) #32	NEK1 (ENSSTOG00000026470) #33	SH3RF1 (ENSSTOG00000014205) #34	CBR4 (ENSSTOG00000026243) #36	PALLD (ENSSTOG00000010414) #37
Arctic ground squirrel	MODERN SPECIES	72									GPM6A (ENSUPAG00010015550)	ADAM29 (ENSUPAG00010015545) #17	GLRA3 (ENSUPAG00010015528) #18	HPGD (ENSUPAG00010015503) #19	CEP44 (ENSUPAG00010015450) #20	FBXO8 (ENSUPAG00010015428) #21	ENSUPAG00010015420	HAND2 (ENSUPAG00010015409) #22	ENSUPAG00010015393	SCRG1 (ENSUPAG00010015386) #23	SAP30 (ENSUPAG00010015378) #25	HMGB2 (ENSUPAG00010015373) #26	GALNT7 (ENSUPAG00010015336) #27	GALNTL6 (ENSUPAG00010015314) #28	AADAT (ENSUPAG00010015280) #29	MFAP3L (ENSUPAG00010015272) #30	HPF1 (ENSUPAG00010015256) #31	CLCN3 (ENSUPAG00010015211) #32	NEK1 (ENSUPAG00010014846) #33	SH3RF1 (ENSUPAG00010014800) #34	CBR4 (ENSUPAG00010014791) #36	ENSUPAG00010014784	PALLD (ENSUPAG00010014559) #37
Alpin marmot	MODERN SPECIES	17	TENM3 (ENSMMMG00000012655)	AGA (ENSMMMG00000012785)	NEIL3 (ENSMMMG00000012802) ##9	VEGFC (ENSMMMG00000012828)	ENSMMMG00000012853	ASB5 (ENSMMMG00000012874)	SPATA4 (ENSMMMG00000012880)	WDR17 (ENSMMMG00000012914)	GPM6A (ENSMMMG00000013073)	ADAM29 (ENSMMMG00000013127) #17	ENSMMMG00000013158	GLRA3 (ENSMMMG00000013188) #18	HPGD (ENSMMMG00000014081) #19	CEP44 (ENSMMMG00000014097) #20	FBXO8 (ENSMMMG00000014117) #21	HAND2 (ENSMMMG00000014142) #22	SCRG1 (ENSMMMG00000014153) #23	SAP30 (ENSMMMG00000014160) #25	ENSMMMG00000014173 #26	GALNT7 (ENSMMMG00000014182) #27	GALNTL6 (ENSMMMG00000014240) #28	ENSMMMG00000014269	AADAT (ENSMMMG00000014288) #29	MFAP3L (ENSMMMG00000014303) #30	HPF1 (ENSMMMG00000014313) #31	CLCN3 (ENSMMMG00000014320) #32	NEK1 (ENSMMMG00000014666) #33	SH3RF1 (ENSMMMG00000014962) #34	CBR4 (ENSMMMG00000014978) #36	PALLD (ENSMMMG00000014986) #37	DDX60 (ENSMMMG00000015007)
Eurasian red squirrel	MODERN SPECIES	14	NEIL3 (ENSSVLG00005003141) ##9	VEGFC (ENSSVLG00005003095)	ENSSVLG00005003081	ENSSVLG00005003064	ASB5 (ENSSVLG00005002993)	SPATA4 (ENSSVLG00005002939)	WDR17 (ENSSVLG00005002773)	ENSSVLG00005002719	GPM6A (ENSSVLG00005002667)	ENSSVLG00005002637	ENSSVLG00005002611 #17	GLRA3 (ENSSVLG00005002568) #18	ENSSVLG00005002462 #19	CEP44 (ENSSVLG00005002394) #20	ENSSVLG00005002353 #21	HAND2 (ENSSVLG00005002329) #22	SCRG1 (ENSSVLG00005002314) #23	SAP30 (ENSSVLG00005002302) #25	ENSSVLG00005002287 #26	GALNT7 (ENSSVLG00005002249) #27	GALNTL6 (ENSSVLG00005002203) #28	AADAT (ENSSVLG00005002134) #29	MFAP3L (ENSSVLG00005002117) #30	HPF1 (ENSSVLG00005002099) #31	CLCN3 (ENSSVLG00005002005) #32	NEK1 (ENSSVLG00005001904) #33	SH3RF1 (ENSSVLG00005001800) #34	ENSSVLG00005001764 #36	ENSSVLG00005001751	PALLD (ENSSVLG00005001640) #37	ENSSVLG00005001553
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Guinea pig	MODERN SPECIES	36	WWC2 (ENSCPOG00000002473)	DCTD (ENSCPOG00000040207)	TENM3 (ENSCPOG00000009475)	AGA (ENSCPOG00000002674)	NEIL3 (ENSCPOG00000003297) ##9	VEGFC (ENSCPOG00000035891)	SPCS3 (ENSCPOG00000008544)	ASB5 (ENSCPOG00000013084)	SPATA4 (ENSCPOG00000024215)	WDR17 (ENSCPOG00000019958)	GPM6A (ENSCPOG00000030014)	GLRA3 (ENSCPOG00000012157) #18	Hpgd (ENSCPOG00000001979) #19	CEP44 (ENSCPOG00000013247) #20	FBXO8 (ENSCPOG00000010347) #21	HAND2 (ENSCPOG00000036252) #22	SCRG1 (ENSCPOG00000001738) #23	SAP30 (ENSCPOG00000001736) #25	HMGB2 (ENSCPOG00000003552) #26	GALNT7 (ENSCPOG00000031800) #27	GALNTL6 (ENSCPOG00000015730) #28	AADAT (ENSCPOG00000002095) #29	MFAP3L (ENSCPOG00000034181) #30	ENSCPOG00000036810 #31	CLCN3 (ENSCPOG00000000904) #32	NEK1 (ENSCPOG00000000339) #33	SH3RF1 (ENSCPOG00000006420) #34	CBR4 (ENSCPOG00000030172) #36	PALLD (ENSCPOG00000007893) #37	DDX60 (ENSCPOG00000008326)	ANXA10 (ENSCPOG00000008321)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Degu	MODERN SPECIES	162				VEGFC (ENSODEG00000012246)	SPCS3 (ENSODEG00000011576)	ASB5 (ENSODEG00000012431)	SPATA4 (ENSODEG00000011174)	WDR17 (ENSODEG00000012341)	GPM6A (ENSODEG00000011825)	ADAM29 (ENSODEG00000011881) #17	GLRA3 (ENSODEG00000012317) #18	HPGD (ENSODEG00000011658) #19	ENSODEG00000011812 #20	FBXO8 (ENSODEG00000012698) #21	ENSODEG00000011991	HAND2 (ENSODEG00000013288) #22	SCRG1 (ENSODEG00000019896) #23	SAP30 (ENSODEG00000011600) #25	GALNT7 (ENSODEG00000011574) #27	GALNTL6 (ENSODEG00000012085) #28	AADAT (ENSODEG00000012149) #29	MFAP3L (ENSODEG00000011832) #30	ENSODEG00000019907	HPF1 (ENSODEG00000012162) #31	CLCN3 (ENSODEG00000013010) #32	ENSODEG00000012680 #33	ENSODEG00000012713	ENSODEG00000013623	SH3RF1 (ENSODEG00000013733) #34	ENSODEG00000011785	CBR4 (ENSODEG00000012444) #36
Long-tailed chinchilla	MODERN SPECIES	110	DCTD (ENSCLAG00000012757)	TENM3 (ENSCLAG00000013736)	AGA (ENSCLAG00000014580)	NEIL3 (ENSCLAG00000015661) ##9	VEGFC (ENSCLAG00000013066)	SPCS3 (ENSCLAG00000015410)	ASB5 (ENSCLAG00000011261)	SPATA4 (ENSCLAG00000011629)	WDR17 (ENSCLAG00000016000)	GPM6A (ENSCLAG00000017285)	ADAM29 (ENSCLAG00000017816) #17	GLRA3 (ENSCLAG00000014561) #18	HPGD (ENSCLAG00000015466) #19	CEP44 (ENSCLAG00000016227) #20	FBXO8 (ENSCLAG00000012922) #21	HAND2 (ENSCLAG00000014433) #22	SCRG1 (ENSCLAG00000014455) #23	SAP30 (ENSCLAG00000013849) #25	HMGB2 (ENSCLAG00000011532) #26	GALNT7 (ENSCLAG00000012394) #27	GALNTL6 (ENSCLAG00000014070) #28	ENSCLAG00000011469 #29	ENSCLAG00000012782 #29	MFAP3L (ENSCLAG00000011811) #30	HPF1 (ENSCLAG00000012272) #31	CLCN3 (ENSCLAG00000013493) #32	NEK1 (ENSCLAG00000013999) #33	SH3RF1 (ENSCLAG00000012679) #34	CBR4 (ENSCLAG00000013243) #36	PALLD (ENSCLAG00000014162) #37	DDX60 (ENSCLAG00000015332)
Naked mole-rat female	MODERN SPECIES	25	VEGFC (ENSHGLG00000010268)	ENSHGLG00000035994	SPCS3 (ENSHGLG00000007439)	ASB5 (ENSHGLG00000032188)	SPATA4 (ENSHGLG00000005881)	ENSHGLG00000042719	ENSHGLG00000038990	WDR17 (ENSHGLG00000013909)	ENSHGLG00000047046	GPM6A (ENSHGLG00000044374)	ENSHGLG00000038324 #17	GLRA3 (ENSHGLG00000010062) #18	HPGD (ENSHGLG00000006196) #19	CEP44 (ENSHGLG00000007002) #20	FBXO8 (ENSHGLG00000015555) #21	HAND2 (ENSHGLG00000044998) #22	ENSHGLG00000033456	ENSHGLG00000049277	SCRG1 (ENSHGLG00000007293) #23	SAP30 (ENSHGLG00000040295) #25	ENSHGLG00000040741 #26	ENSHGLG00000009032 #27	ENSHGLG00000020563	ENSHGLG00000005258 #28	ENSHGLG00000037597	ENSHGLG00000007421	ENSHGLG00000037600	ENSHGLG00000042689	AADAT (ENSHGLG00000046534) #29	ENSHGLG00000011567	MFAP3L (ENSHGLG00000010673) #30
Primates	ANCESTRAL SPECIES	10	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188	ENSGT00940000160623
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188	ENSGT00940000160623
Cebidae_a	ANCESTRAL SPECIES	75	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188	ENSGT00940000160623
Capuchin	MODERN SPECIES	243											GPM6A (ENSCCAG00000029784)	GLRA3 (ENSCCAG00000023624) #18	HPGD (ENSCCAG00000021622) #19	CEP44 (ENSCCAG00000025645) #20	FBXO8 (ENSCCAG00000003189) #21	HAND2 (ENSCCAG00000027949) #22	ENSCCAG00000028102	SCRG1 (ENSCCAG00000028894) #23	SAP30 (ENSCCAG00000014599) #25	ENSCCAG00000036300 #26	GALNT7 (ENSCCAG00000037072) #27	GALNTL6 (ENSCCAG00000021508) #28
Bolivian squirrel monkey	MODERN SPECIES	148														CEP44 (ENSSBOG00000026905) #20	FBXO8 (ENSSBOG00000024361) #21	HAND2 (ENSSBOG00000020792) #22	SCRG1 (ENSSBOG00000020400) #23	SAP30 (ENSSBOG00000028701) #25	HMGB2 (ENSSBOG00000019768) #26	GALNT7 (ENSSBOG00000019315) #27	GALNTL6 (ENSSBOG00000022037) #28	ENSSBOG00000014979	ENSSBOG00000024886	AADAT (ENSSBOG00000024461) #29	MFAP3L (ENSSBOG00000025044) #30	CLCN3 (ENSSBOG00000028784) #32	NEK1 (ENSSBOG00000025743) #33	SH3RF1 (ENSSBOG00000022175) #34	CBR4 (ENSSBOG00000025702) #36	PALLD (ENSSBOG00000022324) #37	DDX60L (ENSSBOG00000034368)
Marmoset	MODERN SPECIES	15	AGA (ENSCJAG00000005476)	NEIL3 (ENSCJAG00000005464) ##9	VEGFC (ENSCJAG00000039809)	SPCS3 (ENSCJAG00000073297)	ASB5 (ENSCJAG00000005400)	SPATA4 (ENSCJAG00000005386)	WDR17 (ENSCJAG00000005304)	GPM6A (ENSCJAG00000005275)	ADAM29 (ENSCJAG00000005263) #17	GLRA3 (ENSCJAG00000005246) #18	HPGD (ENSCJAG00000005216) #19	CEP44 (ENSCJAG00000005195) #20	ENSCJAG00000085401	FBXO8 (ENSCJAG00000045228) #21	ENSCJAG00000080613	HAND2 (ENSCJAG00000069132) #22	SCRG1 (ENSCJAG00000005138) #23	SAP30 (ENSCJAG00000065744) #25	HMGB2 (ENSCJAG00000005112) #26	GALNT7 (ENSCJAG00000005081) #27	GALNTL6 (ENSCJAG00000005073) #28	ENSCJAG00000059633	AADAT (ENSCJAG00000005048) #29	MFAP3L (ENSCJAG00000005041) #30	ENSCJAG00000080915	CLCN3 (ENSCJAG00000004980) #32	NEK1 (ENSCJAG00000004881) #33	ENSCJAG00000077338	SH3RF1 (ENSCJAG00000004855) #34	ENSCJAG00000060059	CBR4 (ENSCJAG00000086762) #36
Mas night monkey	MODERN SPECIES	650											GPM6A (ENSANAG00000020356)	GLRA3 (ENSANAG00000021533) #18	ENSANAG00000025050 #19	CEP44 (ENSANAG00000029783) #20	FBXO8 (ENSANAG00000027604) #21	HAND2 (ENSANAG00000024524) #22	ENSANAG00000024648	SCRG1 (ENSANAG00000028353) #23	SAP30 (ENSANAG00000022209) #25	HMGB2 (ENSANAG00000027778) #26	GALNT7 (ENSANAG00000022459) #27	GALNTL6 (ENSANAG00000022167) #28	ENSANAG00000000563 #28	ENSANAG00000031651
Catarrhini	ANCESTRAL SPECIES	14	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00390000013266.b	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000010063.o.b	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36
Hominidae	ANCESTRAL SPECIES	12	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000010063.o.b	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00860000136092	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000010063.o.b	ENSGT00940000154256.l.a	ENSGT00390000014876.o.a #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00860000136092	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000010063.o.b	ENSGT00940000154256.l.a	ENSGT00390000014876.o.a #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36
Pan	ANCESTRAL SPECIES	7	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00390000013266.b	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00940000160772 #22	ENSGT00860000136092	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00970000193421.C.a.vb.a	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000010063.o.b	ENSGT00940000154256.l.a	ENSGT00390000014876.o.a #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33
Bonobo	MODERN SPECIES	17	VEGFC (ENSPPAG00000043349)	ENSPPAG00000035990	ASB5 (ENSPPAG00000034799)	SPATA4 (ENSPPAG00000034537)	WDR17 (ENSPPAG00000043468)	GPM6A (ENSPPAG00000042891)	ENSPPAG00000034639	ADAM29 (ENSPPAG00000014578) #17	GLRA3 (ENSPPAG00000036427) #18	HPGD (ENSPPAG00000040053) #19	CEP44 (ENSPPAG00000031462) #20	FBXO8 (ENSPPAG00000035822) #21	ENSPPAG00000026731	ENSPPAG00000010368	ENSPPAG00000017140	ENSPPAG00000012097 #22	ENSPPAG00000006019	SCRG1 (ENSPPAG00000036840) #23	ENSPPAG00000034405 #25	HMGB2 (ENSPPAG00000043994) #26	GALNT7 (ENSPPAG00000034268) #27	ENSPPAG00000002018	ENSPPAG00000027655	GALNTL6 (ENSPPAG00000003147) #28	AADAT (ENSPPAG00000041158) #29	MFAP3L (ENSPPAG00000041103) #30	ENSPPAG00000041549	ENSPPAG00000041291	HPF1 (ENSPPAG00000000046) #31	CLCN3 (ENSPPAG00000042101) #32	NEK1 (ENSPPAG00000018386) #33
Chimpanzee	MODERN SPECIES	17	NEIL3 (ENSPTRG00000016617) ##9	VEGFC (ENSPTRG00000016616)	SPCS3 (ENSPTRG00000016615)	ASB5 (ENSPTRG00000016614)	SPATA4 (ENSPTRG00000016612)	WDR17 (ENSPTRG00000016611)	GPM6A (ENSPTRG00000016609)	ENSPTRG00000050820	ADAM29 (ENSPTRG00000016608) #17	GLRA3 (ENSPTRG00000016607) #18	HPGD (ENSPTRG00000016606) #19	CEP44 (ENSPTRG00000016605) #20	FBXO8 (ENSPTRG00000016604) #21	ENSPTRG00000046852	ENSPTRG00000045495	HAND2 (ENSPTRG00000016601) #22	ENSPTRG00000046676	SCRG1 (ENSPTRG00000016599) #23	SAP30 (ENSPTRG00000016598) #25	HMGB2 (ENSPTRG00000016597) #26	GALNT7 (ENSPTRG00000016596) #27	ENSPTRG00000051120	ENSPTRG00000047261	GALNTL6 (ENSPTRG00000016595) #28	AADAT (ENSPTRG00000016592) #29	MFAP3L (ENSPTRG00000016591) #30	ENSPTRG00000051995	ENSPTRG00000051762	HPF1 (ENSPTRG00000016590) #31	CLCN3 (ENSPTRG00000016589) #32	NEK1 (ENSPTRG00000016588) #33
Human	MODERN SPECIES	16	DCTD (ENSG00000129187)	TENM3 (ENSG00000218336)	AGA (ENSG00000038002)	NEIL3 (ENSG00000109674) ##9	VEGFC (ENSG00000150630)	SPCS3 (ENSG00000129128)	ASB5 (ENSG00000164122)	SPATA4 (ENSG00000150628)	WDR17 (ENSG00000150627)	GPM6A (ENSG00000150625)	ADAM29 (ENSG00000168594) #17	GLRA3 (ENSG00000145451) #18	HPGD (ENSG00000164120) #19	CEP44 (ENSG00000164118) #20	FBXO8 (ENSG00000164117) #21	HAND2 (ENSG00000164107) #22	SCRG1 (ENSG00000164106) #23	SAP30 (ENSG00000164105) #25	HMGB2 (ENSG00000164104) #26	GALNT7 (ENSG00000109586) #27	GALNTL6 (ENSG00000174473) #28	AADAT (ENSG00000109576) #29	MFAP3L (ENSG00000198948) #30	HPF1 (ENSG00000056050) #31	CLCN3 (ENSG00000109572) #32	NEK1 (ENSG00000137601) #33	SH3RF1 (ENSG00000154447) #34	CBR4 (ENSG00000145439) #36	PALLD (ENSG00000129116) #37	DDX60L (ENSG00000181381)	DDX60 (ENSG00000137628)
Gorilla	MODERN SPECIES	17	TENM3 (ENSGGOG00000011344)	AGA (ENSGGOG00000007600)	NEIL3 (ENSGGOG00000016799) ##9	ENSGGOG00000040176	SPCS3 (ENSGGOG00000023323)	ASB5 (ENSGGOG00000009089)	SPATA4 (ENSGGOG00000001066)	WDR17 (ENSGGOG00000010477)	GPM6A (ENSGGOG00000002629)	ADAM29 (ENSGGOG00000011350) #17	GLRA3 (ENSGGOG00000006359) #18	HPGD (ENSGGOG00000009878) #19	CEP44 (ENSGGOG00000025044) #20	FBXO8 (ENSGGOG00000005344) #21	ENSGGOG00000024847	HAND2 (ENSGGOG00000006147) #22	ENSGGOG00000012612	SCRG1 (ENSGGOG00000025633) #23	SAP30 (ENSGGOG00000005082) #25	HMGB2 (ENSGGOG00000015882) #26	GALNT7 (ENSGGOG00000028299) #27	ENSGGOG00000022063	GALNTL6 (ENSGGOG00000002766) #28	ENSGGOG00000037146	AADAT (ENSGGOG00000012081) #29	ENSGGOG00000025735 #30	ENSGGOG00000024258 #30	ENSGGOG00000026687	ENSGGOG00000024271	HPF1 (ENSGGOG00000003090) #31	CLCN3 (ENSGGOG00000014250) #32
Orangutan	MODERN SPECIES	17	TENM3 (ENSPPYG00000029729)	AGA (ENSPPYG00000015220)	NEIL3 (ENSPPYG00000040336) ##9	VEGFC (ENSPPYG00000015219)	SPCS3 (ENSPPYG00000038635)	ASB5 (ENSPPYG00000015217)	SPATA4 (ENSPPYG00000015216)	WDR17 (ENSPPYG00000015215)	GPM6A (ENSPPYG00000015214)	ADAM29 (ENSPPYG00000015277) #17	GLRA3 (ENSPPYG00000015213) #18	HPGD (ENSPPYG00000015212) #19	CEP44 (ENSPPYG00000015211) #20	FBXO8 (ENSPPYG00000015210) #21	ENSPPYG00000036877	HAND2 (ENSPPYG00000039964) #22	SCRG1 (ENSPPYG00000015206) #23	SAP30 (ENSPPYG00000015205) #25	HMGB2 (ENSPPYG00000015204) #26	GALNT7 (ENSPPYG00000015203) #27	ENSPPYG00000032084	GALNTL6 (ENSPPYG00000015201) #28	ENSPPYG00000015200	AADAT (ENSPPYG00000015196) #29	MFAP3L (ENSPPYG00000015194) #30	HPF1 (ENSPPYG00000015193) #31	CLCN3 (ENSPPYG00000015192) #32	NEK1 (ENSPPYG00000015190) #33	SH3RF1 (ENSPPYG00000015189) #34	CBR4 (ENSPPYG00000015188) #36	PALLD (ENSPPYG00000015186) #37
Gibbon	MODERN SPECIES	22	NEIL3 (ENSNLEG00000016818) ##9	VEGFC (ENSNLEG00000016806)	ENSNLEG00000016805	ASB5 (ENSNLEG00000016797)	SPATA4 (ENSNLEG00000016788)	WDR17 (ENSNLEG00000016773)	GPM6A (ENSNLEG00000016762)	ENSNLEG00000033166	ENSNLEG00000016761	ADAM29 (ENSNLEG00000006715) #17	GLRA3 (ENSNLEG00000006711) #18	HPGD (ENSNLEG00000006696) #19	CEP44 (ENSNLEG00000006689) #20	FBXO8 (ENSNLEG00000006678) #21	ENSNLEG00000027690	HAND2 (ENSNLEG00000006670) #22	SCRG1 (ENSNLEG00000006669) #23	SAP30 (ENSNLEG00000031399) #25	ENSNLEG00000033142	HMGB2 (ENSNLEG00000006662) #26	GALNT7 (ENSNLEG00000006654) #27	ENSNLEG00000035794	GALNTL6 (ENSNLEG00000006652) #28	AADAT (ENSNLEG00000006647) #29	ENSNLEG00000006644 #30	ENSNLEG00000029490	ENSNLEG00000035908	HPF1 (ENSNLEG00000006641) #31	CLCN3 (ENSNLEG00000006634) #32	NEK1 (ENSNLEG00000006608) #33	SH3RF1 (ENSNLEG00000006600) #34
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Rhinopithecus	ANCESTRAL SPECIES	317														ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36
Black snub-nosed monkey	MODERN SPECIES	1810														FBXO8 (ENSRBIG00000030693) #21	ENSRBIG00000033211	HAND2 (ENSRBIG00000028566) #22
Golden snub-nosed monkey	MODERN SPECIES	1115																HAND2 (ENSRROG00000031801) #22	SCRG1 (ENSRROG00000014911) #23	SAP30 (ENSRROG00000002347) #25	HMGB2 (ENSRROG00000028474) #26	GALNT7 (ENSRROG00000036234) #27	ENSRROG00000010395	GALNTL6 (ENSRROG00000043458) #28	ENSRROG00000043442	AADAT (ENSRROG00000034574) #29	MFAP3L (ENSRROG00000045554) #30	ENSRROG00000031239	HPF1 (ENSRROG00000021840) #31	CLCN3 (ENSRROG00000043259) #32	NEK1 (ENSRROG00000037619) #33	SH3RF1 (ENSRROG00000016875) #34	CBR4 (ENSRROG00000034901) #36
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Vervet Monkey	MODERN SPECIES	26	ENSCSAG00000003051	AGA (ENSCSAG00000003060)	NEIL3 (ENSCSAG00000003064) ##9	ENSCSAG00000003067	VEGFC (ENSCSAG00000003070)	SPCS3 (ENSCSAG00000003075)	ASB5 (ENSCSAG00000003079)	SPATA4 (ENSCSAG00000003081)	WDR17 (ENSCSAG00000003086)	GPM6A (ENSCSAG00000003087)	ADAM29 (ENSCSAG00000003088) #17	GLRA3 (ENSCSAG00000003089) #18	HPGD (ENSCSAG00000003090) #19	CEP44 (ENSCSAG00000003091) #20	FBXO8 (ENSCSAG00000003092) #21	HAND2 (ENSCSAG00000003094) #22	SCRG1 (ENSCSAG00000003096) #23	SAP30 (ENSCSAG00000003099) #25	HMGB2 (ENSCSAG00000003100) #26	GALNT7 (ENSCSAG00000003101) #27	ENSCSAG00000003102 #28	ENSCSAG00000003103 #28	ENSCSAG00000000098	AADAT (ENSCSAG00000003109) #29	MFAP3L (ENSCSAG00000003111) #30	HPF1 (ENSCSAG00000003113) #31	CLCN3 (ENSCSAG00000003116) #32	NEK1 (ENSCSAG00000003121) #33	SH3RF1 (ENSCSAG00000003124) #34	CBR4 (ENSCSAG00000003127) #36	PALLD (ENSCSAG00000003143) #37
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb.a #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Macaca	ANCESTRAL SPECIES	18	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb.a #26	ENSGT00940000158105 #27	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Pig-tailed macaque	MODERN SPECIES	375	AGA (ENSMNEG00000037318)	NEIL3 (ENSMNEG00000036177) ##9	VEGFC (ENSMNEG00000045119)	SPCS3 (ENSMNEG00000036272)	ASB5 (ENSMNEG00000034889)	SPATA4 (ENSMNEG00000033332)	WDR17 (ENSMNEG00000033941)	GPM6A (ENSMNEG00000042014)	GLRA3 (ENSMNEG00000035116) #18	HPGD (ENSMNEG00000040489) #19	ENSMNEG00000043522	CEP44 (ENSMNEG00000012365) #20	FBXO8 (ENSMNEG00000043927) #21	ENSMNEG00000036274	ENSMNEG00000045386	HAND2 (ENSMNEG00000039463) #22	SCRG1 (ENSMNEG00000032472) #23	SAP30 (ENSMNEG00000039771) #25	ENSMNEG00000035959 #26	GALNT7 (ENSMNEG00000040629) #27	GALNTL6 (ENSMNEG00000039184) #28	ENSMNEG00000040238	ENSMNEG00000029628	AADAT (ENSMNEG00000014362) #29	MFAP3L (ENSMNEG00000038878) #30	ENSMNEG00000034235	HPF1 (ENSMNEG00000029561) #31	CLCN3 (ENSMNEG00000028245) #32	NEK1 (ENSMNEG00000042336) #33	SH3RF1 (ENSMNEG00000039365) #34	CBR4 (ENSMNEG00000045378) #36
Macaca_a	ANCESTRAL SPECIES	12	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.b.a.b.a.a.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.b.d.a.a	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb.a #26	ENSGT00940000158105 #27	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Crab-eating macaque	MODERN SPECIES	15	NEIL3 (ENSMFAG00000002547) ##9	VEGFC (ENSMFAG00000003745)	ENSMFAG00000049264	SPCS3 (ENSMFAG00000001302)	ASB5 (ENSMFAG00000000562)	SPATA4 (ENSMFAG00000033699)	ENSMFAG00000062819	WDR17 (ENSMFAG00000043874)	GPM6A (ENSMFAG00000030986)	ADAM29 (ENSMFAG00000038871) #17	GLRA3 (ENSMFAG00000034554) #18	HPGD (ENSMFAG00000041220) #19	CEP44 (ENSMFAG00000003438) #20	FBXO8 (ENSMFAG00000034344) #21	ENSMFAG00000055873	HAND2 (ENSMFAG00000046008) #22	SCRG1 (ENSMFAG00000038499) #23	SAP30 (ENSMFAG00000037966) #25	ENSMFAG00000002605 #26	GALNT7 (ENSMFAG00000041069) #27	ENSMFAG00000030083	GALNTL6 (ENSMFAG00000003378) #28	AADAT (ENSMFAG00000042881) #29	ENSMFAG00000060933	MFAP3L (ENSMFAG00000065805) #30	ENSMFAG00000038704	HPF1 (ENSMFAG00000038736) #31	CLCN3 (ENSMFAG00000039959) #32	NEK1 (ENSMFAG00000043975) #33	SH3RF1 (ENSMFAG00000026776) #34	CBR4 (ENSMFAG00000002570) #36
Rhesus	MODERN SPECIES	15	ENSMMUG00000059103	AGA (ENSMMUG00000007393)	NEIL3 (ENSMMUG00000007394) ##9	VEGFC (ENSMMUG00000003748)	ENSMMUG00000056931	SPCS3 (ENSMMUG00000064613)	ASB5 (ENSMMUG00000013736)	SPATA4 (ENSMMUG00000013733)	WDR17 (ENSMMUG00000013730)	GPM6A (ENSMMUG00000007814)	ADAM29 (ENSMMUG00000061083) #17	GLRA3 (ENSMMUG00000008868) #18	HPGD (ENSMMUG00000020408) #19	CEP44 (ENSMMUG00000001743) #20	FBXO8 (ENSMMUG00000002331) #21	HAND2 (ENSMMUG00000048816) #22	SCRG1 (ENSMMUG00000002399) #23	SAP30 (ENSMMUG00000002401) #25	HMGB2 (ENSMMUG00000003187) #26	GALNT7 (ENSMMUG00000013106) #27	GALNTL6 (ENSMMUG00000016767) #28	ENSMMUG00000057646	AADAT (ENSMMUG00000019473) #29	MFAP3L (ENSMMUG00000040113) #30	HPF1 (ENSMMUG00000010232) #31	CLCN3 (ENSMMUG00000010228) #32	NEK1 (ENSMMUG00000012244) #33	ENSMMUG00000050412	SH3RF1 (ENSMMUG00000012701) #34	CBR4 (ENSMMUG00000015921) #36	PALLD (ENSMMUG00000007365) #37
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb.a #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Olive baboon	MODERN SPECIES	13	NEIL3 (ENSPANG00000014727) ##9	ENSPANG00000045708	VEGFC (ENSPANG00000038064)	SPCS3 (ENSPANG00000005000)	ASB5 (ENSPANG00000019807)	SPATA4 (ENSPANG00000008029)	WDR17 (ENSPANG00000018056)	GPM6A (ENSPANG00000024619)	ENSPANG00000049567	ENSPANG00000038055 #17	GLRA3 (ENSPANG00000019809) #18	HPGD (ENSPANG00000019812) #19	CEP44 (ENSPANG00000011904) #20	FBXO8 (ENSPANG00000007876) #21	POLR3K (ENSPANG00000010715)	HAND2 (ENSPANG00000023378) #22	SCRG1 (ENSPANG00000011779) #23	SAP30 (ENSPANG00000005972) #25	ENSPANG00000004276 #26	GALNT7 (ENSPANG00000018129) #27	ENSPANG00000038603	GALNTL6 (ENSPANG00000006244) #28	ENSPANG00000013594	AADAT (ENSPANG00000000686) #29	MFAP3L (ENSPANG00000008031) #30	ENSPANG00000007780	HPF1 (ENSPANG00000006046) #31	CLCN3 (ENSPANG00000011413) #32	NEK1 (ENSPANG00000018130) #33	SH3RF1 (ENSPANG00000006245) #34	CBR4 (ENSPANG00000017537) #36
Cercopithecinae_d	ANCESTRAL SPECIES	21	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466.rb.a #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00940000154256.l.a	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328
Drill	MODERN SPECIES	933															ENSMLEG00000036391	ENSMLEG00000035551 #22	SCRG1 (ENSMLEG00000004733) #23	SAP30 (ENSMLEG00000033000) #25	ENSMLEG00000034695 #26	GALNT7 (ENSMLEG00000000070) #27	GALNTL6 (ENSMLEG00000042200) #28	ENSMLEG00000033378
Sooty mangabey	MODERN SPECIES	272	TENM3 (ENSCATG00000040062)	ENSCATG00000024803	AGA (ENSCATG00000038636)	NEIL3 (ENSCATG00000033777) ##9	VEGFC (ENSCATG00000040718)	SPCS3 (ENSCATG00000019740)	ASB5 (ENSCATG00000033982)	SPATA4 (ENSCATG00000012381)	WDR17 (ENSCATG00000019324)	GPM6A (ENSCATG00000039800)	GLRA3 (ENSCATG00000030144) #18	HPGD (ENSCATG00000000045) #19	ENSCATG00000038865	CEP44 (ENSCATG00000032368) #20	FBXO8 (ENSCATG00000042187) #21	HAND2 (ENSCATG00000043828) #22	SCRG1 (ENSCATG00000034185) #23	SAP30 (ENSCATG00000035487) #25	GALNT7 (ENSCATG00000042532) #27	GALNTL6 (ENSCATG00000034550) #28	ENSCATG00000042549	AADAT (ENSCATG00000013451) #29	MFAP3L (ENSCATG00000017844) #30	ENSCATG00000029833	HPF1 (ENSCATG00000040382) #31	CLCN3 (ENSCATG00000035110) #32	NEK1 (ENSCATG00000041685) #33	SH3RF1 (ENSCATG00000044552) #34	CBR4 (ENSCATG00000044537) #36	ENSCATG00000038325	PALLD (ENSCATG00000034876) #37
Strepsirrhini	ANCESTRAL SPECIES	43	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Lemuriformes	ANCESTRAL SPECIES	71			ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Lemuriformes_a	ANCESTRAL SPECIES	149				ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000160623
Coquerels sifaka	MODERN SPECIES	503				AGA (ENSPCOG00000026778)	NEIL3 (ENSPCOG00000010888) ##9	VEGFC (ENSPCOG00000022578)	SPCS3 (ENSPCOG00000028475)	ASB5 (ENSPCOG00000007349)	SPATA4 (ENSPCOG00000026747)	ENSPCOG00000016498	GPM6A (ENSPCOG00000015954)	GLRA3 (ENSPCOG00000013736) #18	HPGD (ENSPCOG00000028082) #19	CEP44 (ENSPCOG00000014703) #20	FBXO8 (ENSPCOG00000017578) #21	HAND2 (ENSPCOG00000007675) #22	SAP30 (ENSPCOG00000024121) #25	ENSPCOG00000015461 #26	GALNT7 (ENSPCOG00000013927) #27	GALNTL6 (ENSPCOG00000024025) #28	BARX2 (ENSPCOG00000028693)	ARHGAP32 (ENSPCOG00000020580)	ENSPCOG00000013072	KCNJ5 (ENSPCOG00000017726)	KCNJ1 (ENSPCOG00000027879)	FLI1 (ENSPCOG00000025581)	ETS1 (ENSPCOG00000028728)
Greater bamboo lemur	MODERN SPECIES	127		AGA (ENSPSMG00000020309)	NEIL3 (ENSPSMG00000020303) ##9	VEGFC (ENSPSMG00000020286)	SPCS3 (ENSPSMG00000020259)	ASB5 (ENSPSMG00000020252)	SPATA4 (ENSPSMG00000020238)	WDR17 (ENSPSMG00000020226)	GPM6A (ENSPSMG00000020158)	ENSPSMG00000020137 #16	ENSPSMG00000020126 #17	GLRA3 (ENSPSMG00000020114) #18	HPGD (ENSPSMG00000020069) #19	CEP44 (ENSPSMG00000020017) #20	FBXO8 (ENSPSMG00000019948) #21	HAND2 (ENSPSMG00000019893) #22	SCRG1 (ENSPSMG00000019876) #23	SAP30 (ENSPSMG00000019866) #25	HMGB2 (ENSPSMG00000019855) #26	GALNT7 (ENSPSMG00000019840) #27	GALNTL6 (ENSPSMG00000019785) #28	AADAT (ENSPSMG00000019745) #29	MFAP3L (ENSPSMG00000019710) #30	HPF1 (ENSPSMG00000019705) #31	CLCN3 (ENSPSMG00000019500) #32	NEK1 (ENSPSMG00000019140) #33	SH3RF1 (ENSPSMG00000018755) #34	CBR4 (ENSPSMG00000018728) #36	PALLD (ENSPSMG00000018690) #37	ANXA10 (ENSPSMG00000018630)	ENSPSMG00000018604
Mouse lemur	MODERN SPECIES	5	ENSMICG00000035656	ENSMICG00000035005	AGA (ENSMICG00000009153)	NEIL3 (ENSMICG00000009147) ##9	VEGFC (ENSMICG00000031537)	SPCS3 (ENSMICG00000045665)	ASB5 (ENSMICG00000035551)	SPATA4 (ENSMICG00000001985)	WDR17 (ENSMICG00000001970)	GPM6A (ENSMICG00000003037)	ADAM29 (ENSMICG00000032176) #17	GLRA3 (ENSMICG00000012219) #18	HPGD (ENSMICG00000014923) #19	CEP44 (ENSMICG00000009966) #20	FBXO8 (ENSMICG00000009959) #21	HAND2 (ENSMICG00000046152) #22	SCRG1 (ENSMICG00000008612) #23	SAP30 (ENSMICG00000028650) #25	HMGB2 (ENSMICG00000043425) #26	GALNT7 (ENSMICG00000016467) #27	GALNTL6 (ENSMICG00000016455) #28	ENSMICG00000030647	ENSMICG00000043865 #29	ENSMICG00000008046 #29	MFAP3L (ENSMICG00000017310) #30	HPF1 (ENSMICG00000017309) #31	CLCN3 (ENSMICG00000017306) #32	NEK1 (ENSMICG00000017300) #33	ENSMICG00000033035	SH3RF1 (ENSMICG00000017298) #34	CBR4 (ENSMICG00000034212) #36
Bushbaby	MODERN SPECIES	176	ENSOGAG00000032766	AGA (ENSOGAG00000015190)	NEIL3 (ENSOGAG00000012624) ##9	VEGFC (ENSOGAG00000003828)	SPCS3 (ENSOGAG00000003825)	ASB5 (ENSOGAG00000012227)	SPATA4 (ENSOGAG00000012224)	WDR17 (ENSOGAG00000012212)	GPM6A (ENSOGAG00000001624)	ENSOGAG00000025364	ADAM29 (ENSOGAG00000015487) #17	GLRA3 (ENSOGAG00000015483) #18	HPGD (ENSOGAG00000004664) #19	CEP44 (ENSOGAG00000009295) #20	FBXO8 (ENSOGAG00000005533) #21	HAND2 (ENSOGAG00000027928) #22	SAP30 (ENSOGAG00000017151) #25	HMGB2 (ENSOGAG00000017149) #26	GALNT7 (ENSOGAG00000017148) #27	ENSOGAG00000002295 #28	ENSOGAG00000030679 #28	ENSOGAG00000008331 #29	MFAP3L (ENSOGAG00000008328) #30	HPF1 (ENSOGAG00000008007) #31	CLCN3 (ENSOGAG00000008001) #32	NEK1 (ENSOGAG00000007988) #33
Atlantogenata	ANCESTRAL SPECIES	84	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188.d
Xenarthra	ANCESTRAL SPECIES	925																ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27
Armadillo	MODERN SPECIES	2512																HAND2 (ENSDNOG00000035702) #22	SCRG1 (ENSDNOG00000032988) #23	SAP30 (ENSDNOG00000005617) #25	HMGB2 (ENSDNOG00000019440) #26	GALNT7 (ENSDNOG00000036188) #27
Afrotheria	ANCESTRAL SPECIES	92	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188.d
Afrotheria_a	ANCESTRAL SPECIES	95	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394 #17	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000164328	ENSGT00940000157188.d
Elephant	MODERN SPECIES	355	ENSLAFG00000029165	AGA (ENSLAFG00000005742)	NEIL3 (ENSLAFG00000014165) ##9	VEGFC (ENSLAFG00000009460)	SPCS3 (ENSLAFG00000010193)	ASB5 (ENSLAFG00000014665)	SPATA4 (ENSLAFG00000016180)	WDR17 (ENSLAFG00000014654)	GPM6A (ENSLAFG00000009135)	ENSLAFG00000030784 #16	ADAM29 (ENSLAFG00000026574) #17	GLRA3 (ENSLAFG00000009978) #18	HPGD (ENSLAFG00000001508) #19	CEP44 (ENSLAFG00000016042) #20	FBXO8 (ENSLAFG00000022683) #21	HAND2 (ENSLAFG00000029843) #22	SCRG1 (ENSLAFG00000002775) #23	SAP30 (ENSLAFG00000002772) #25	ENSLAFG00000010417 #26	GALNT7 (ENSLAFG00000010411) #27	GALNTL6 (ENSLAFG00000012366) #28	ENSLAFG00000031767 #28	AADAT (ENSLAFG00000009712) #29	MFAP3L (ENSLAFG00000017991) #30	HPF1 (ENSLAFG00000020816) #31	CLCN3 (ENSLAFG00000001385) #32	ENSLAFG00000032725 #33	ENSLAFG00000013526 #33	SH3RF1 (ENSLAFG00000015901) #34	CBR4 (ENSLAFG00000016271) #36	ENSLAFG00000016121 #37
Tenrec	MODERN SPECIES	17288															ENSETEG00000018860	HAND2 (ENSETEG00000018858) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298.a	ENSGT00940000155038 #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Opossum	MODERN SPECIES	4	ENSMODG00000051463	AGA (ENSMODG00000003821)	NEIL3 (ENSMODG00000003813) ##9	VEGFC (ENSMODG00000003799)	SPCS3 (ENSMODG00000040442)	ASB5 (ENSMODG00000003766)	ENSMODG00000003744	WDR17 (ENSMODG00000003734)	GPM6A (ENSMODG00000003704)	GLRA3 (ENSMODG00000003650) #18	ENSMODG00000045340	HPGD (ENSMODG00000050122) #19	ENSMODG00000048508	ENSMODG00000003603 #20	FBXO8 (ENSMODG00000003584) #21	HAND2 (ENSMODG00000041860) #22	SCRG1 (ENSMODG00000003543) #23	SAP30 (ENSMODG00000003536) #25	HMGB2 (ENSMODG00000039182) #26	ENSMODG00000050544	ENSMODG00000025055	ENSMODG00000003514 #28	ENSMODG00000049108 #28	ENSMODG00000048164	ENSMODG00000003404	ENSMODG00000025054	ENSMODG00000003333	ENSMODG00000025017	ENSMODG00000050691	ENSMODG00000025013	ENSMODG00000045663
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298.a	ENSGT00940000155038 #28	ENSGT01020000234456	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000028695	ENSSHAG00000018103	ENSSHAG00000021250	AGA (ENSSHAG00000006591)	NEIL3 (ENSSHAG00000007680) ##9	VEGFC (ENSSHAG00000013634)	SPCS3 (ENSSHAG00000026917)	ASB5 (ENSSHAG00000015114)	ENSSHAG00000015449	WDR17 (ENSSHAG00000015564)	GPM6A (ENSSHAG00000016711)	GLRA3 (ENSSHAG00000028551) #18	HPGD (ENSSHAG00000008831) #19	ENSSHAG00000010919 #20	FBXO8 (ENSSHAG00000011317) #21	HAND2 (ENSSHAG00000011188) #22	SCRG1 (ENSSHAG00000012103) #23	SAP30 (ENSSHAG00000024249) #25	HMGB2 (ENSSHAG00000012461) #26	ENSSHAG00000012501 #27	ENSSHAG00000014155	ENSSHAG00000014428 #28	ENSSHAG00000031599	ENSSHAG00000027852	ENSSHAG00000003993	ENSSHAG00000008847 #29	MFAP3L (ENSSHAG00000026889) #30	HPF1 (ENSSHAG00000011452) #31	CLCN3 (ENSSHAG00000011599) #32	NEK1 (ENSSHAG00000012339) #33	SH3RF1 (ENSSHAG00000013252) #34
Diprotodontia	ANCESTRAL SPECIES	43	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000168298.a	ENSGT00940000155038 #28	ENSGT01020000234456	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Wallaby	MODERN SPECIES	6944																HAND2 (ENSMEUG00000010715) #22
Diprotodontia_a	ANCESTRAL SPECIES	38	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000168298.a	ENSGT00440000038032.ib	ENSGT00940000155038 #28	ENSGT01020000234456	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Common wonbat	MODERN SPECIES	1057	ENSVURG00010007209	ENSVURG00010007226	AGA (ENSVURG00010007244)	NEIL3 (ENSVURG00010007255) ##9	VEGFC (ENSVURG00010007272)	SPCS3 (ENSVURG00010007285)	ASB5 (ENSVURG00010007296)	ENSVURG00010007314	WDR17 (ENSVURG00010007351)	GPM6A (ENSVURG00010008007)	ENSVURG00010008026	GLRA3 (ENSVURG00010008080) #18	HPGD (ENSVURG00010008239) #19	CEP44 (ENSVURG00010008280) #20	FBXO8 (ENSVURG00010008302) #21	HAND2 (ENSVURG00010008339) #22	SCRG1 (ENSVURG00010008367) #23	SAP30 (ENSVURG00010008374) #25	HMGB2 (ENSVURG00010008382) #26	ENSVURG00010008399	ENSVURG00010008409	ENSVURG00010008416	ENSVURG00010008484 #28	ENSVURG00010008502 #28	ENSVURG00010008547	AADAT (ENSVURG00010008564) #29	MFAP3L (ENSVURG00010008575) #30	HPF1 (ENSVURG00010008591) #31	CLCN3 (ENSVURG00010008612) #32	NEK1 (ENSVURG00010008719) #33	ENSVURG00010008909
koala	MODERN SPECIES	68	NEIL3 (ENSPCIG00000024590) ##9	VEGFC (ENSPCIG00000006671)	SPCS3 (ENSPCIG00000024289)	ASB5 (ENSPCIG00000024288)	SPATA4 (ENSPCIG00000024287)	WDR17 (ENSPCIG00000011114)	ENSPCIG00000024285	GPM6A (ENSPCIG00000014016)	ENSPCIG00000010644	ENSPCIG00000005116	ENSPCIG00000014057	GLRA3 (ENSPCIG00000030265) #18	HPGD (ENSPCIG00000009562) #19	CEP44 (ENSPCIG00000022019) #20	FBXO8 (ENSPCIG00000022026) #21	HAND2 (ENSPCIG00000007105) #22	SCRG1 (ENSPCIG00000008569) #23	SAP30 (ENSPCIG00000031794) #25	HMGB2 (ENSPCIG00000007107) #26	ENSPCIG00000007109	ENSPCIG00000007112	ENSPCIG00000031718 #28	ENSPCIG00000007117 #28	ENSPCIG00000032836	ENSPCIG00000029808	ENSPCIG00000010845	ENSPCIG00000010846	ENSPCIG00000035559	AADAT (ENSPCIG00000028046) #29	MFAP3L (ENSPCIG00000028044) #30	HPF1 (ENSPCIG00000024011) #31
Platypus	MODERN SPECIES	3	ENSOANG00000041602	ENSOANG00000048730	DCTD (ENSOANG00000049130)	TENM3 (ENSOANG00000013681)	AGA (ENSOANG00000040053)	VEGFC (ENSOANG00000015685)	SPCS3 (ENSOANG00000015686)	ASB5 (ENSOANG00000041691)	ENSOANG00000045846	WDR17 (ENSOANG00000003590)	GPM6A (ENSOANG00000036971)	GLRA3 (ENSOANG00000005603) #18	HPGD (ENSOANG00000005602) #19	ENSOANG00000005601 #20	FBXO8 (ENSOANG00000005600) #21	HAND2 (ENSOANG00000043556) #22	SCRG1 (ENSOANG00000011492) #23	SAP30 (ENSOANG00000011493) #25	ENSOANG00000044550 #26	GALNT7 (ENSOANG00000011495) #27	ENSOANG00000003214 #28	ENSOANG00000012484 #28	ENSOANG00000029673	AADAT (ENSOANG00000007439) #29	MFAP3L (ENSOANG00000007440) #30	HPF1 (ENSOANG00000007441) #31	CLCN3 (ENSOANG00000007442) #32	NEK1 (ENSOANG00000007443) #33	SH3RF1 (ENSOANG00000007444) #34	ENSOANG00000007445 #36	PALLD (ENSOANG00000007453) #37
Sauria	ANCESTRAL SPECIES	6	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b
tuatara	MODERN SPECIES	1133														CEP44 (ENSSPUG00000012941) #20	FBXO8 (ENSSPUG00000012962) #21	HAND2 (ENSSPUG00000012980) #22	SCRG1 (ENSSPUG00000012987) #23	SAP30 (ENSSPUG00000012997) #25	HMGB2 (ENSSPUG00000013005) #26	GALNT7 (ENSSPUG00000013015) #27	ENSSPUG00000013021 #28	ENSSPUG00000013036 #28
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b
Laterata	ANCESTRAL SPECIES	9	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873.a #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b
Common wall lizard	MODERN SPECIES	17	NEIL3 (ENSPMRG00000010325) ##9	VEGFC (ENSPMRG00000010331)	SPCS3 (ENSPMRG00000010334)	ASB5 (ENSPMRG00000010339)	SPATA4 (ENSPMRG00000010345)	WDR17 (ENSPMRG00000010350)	GPM6A (ENSPMRG00000010361)	ENSPMRG00000010367	GLRA3 (ENSPMRG00000010369) #18	HPGD (ENSPMRG00000010378) #19	ENSPMRG00000010383 #20	ENSPMRG00000010390 #20	FBXO8 (ENSPMRG00000010399) #21	ENSPMRG00000010404	ENSPMRG00000010414	HAND2 (ENSPMRG00000010419) #22	SCRG1 (ENSPMRG00000010423) #23	SAP30 (ENSPMRG00000010430) #25	ENSPMRG00000010436 #26	GALNT7 (ENSPMRG00000010446) #27	GALNTL6 (ENSPMRG00000010453) #28	ENSPMRG00000010460	ENSPMRG00000010466	ENSPMRG00000010472	ENSPMRG00000010475	ENSPMRG00000010481 #29	ENSPMRG00000010491 #29	ENSPMRG00000010503	HPF1 (ENSPMRG00000010507) #31	CLCN3 (ENSPMRG00000010515) #32	NEK1 (ENSPMRG00000010552) #33
Argentine black and white tegu	MODERN SPECIES	26	TENM3 (ENSSMRG00000009568)	ENSSMRG00000009539	AGA (ENSSMRG00000009489)	NEIL3 (ENSSMRG00000009488) ##9	VEGFC (ENSSMRG00000009460)	SPCS3 (ENSSMRG00000009459)	ASB5 (ENSSMRG00000009458)	SPATA4 (ENSSMRG00000009454)	WDR17 (ENSSMRG00000009452)	GPM6A (ENSSMRG00000009451)	ENSSMRG00000009408	GLRA3 (ENSSMRG00000009406) #18	HPGD (ENSSMRG00000009397) #19	CEP44 (ENSSMRG00000009396) #20	FBXO8 (ENSSMRG00000009395) #21	HAND2 (ENSSMRG00000009378) #22	SCRG1 (ENSSMRG00000009363) #23	SAP30 (ENSSMRG00000009362) #25	HMGB2 (ENSSMRG00000009361) #26	GALNT7 (ENSSMRG00000009360) #27	ENSSMRG00000009353 #28	ENSSMRG00000009344 #28	ENSSMRG00000009343 #28	ENSSMRG00000009328 #29	ENSSMRG00000009310 #29	MFAP3L (ENSSMRG00000009309) #30	HPF1 (ENSSMRG00000009308) #31	CLCN3 (ENSSMRG00000009307) #32	NEK1 (ENSSMRG00000004496) #33	SH3RF1 (ENSSMRG00000004477) #34	CBR4 (ENSSMRG00000004473) #36
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b
Elapidae	ANCESTRAL SPECIES	11	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000006633.b #25	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000006633.b #25	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT01030000234566.e.b.a.a	ENSGT00990000212018	ENSGT00950000183045.C	ENSGT00990000214110	ENSGT00940000156167.b	ENSGT00940000154267.A	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000006633.b #25	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00940000153432.A.a.f	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414
Eastern brown snake	MODERN SPECIES	12	ENSPTXG00000001216	AGA (ENSPTXG00000002658)	ENSPTXG00000002660	VEGFC (ENSPTXG00000002663)	ENSPTXG00000002666	SPCS3 (ENSPTXG00000002669)	ASB5 (ENSPTXG00000002674)	SPATA4 (ENSPTXG00000002678)	WDR17 (ENSPTXG00000002692)	ENSPTXG00000002766	ENSPTXG00000002769	GLRA3 (ENSPTXG00000002774) #18	HPGD (ENSPTXG00000002779) #19	CEP44 (ENSPTXG00000002780) #20	FBXO8 (ENSPTXG00000002781) #21	HAND2 (ENSPTXG00000002784) #22	ENSPTXG00000002786	SAP30 (ENSPTXG00000002789) #25	GALNT7 (ENSPTXG00000002791) #27	GALNTL6 (ENSPTXG00000002793) #28	ENSPTXG00000002794	AADAT (ENSPTXG00000002796) #29	MFAP3L (ENSPTXG00000002798) #30	HPF1 (ENSPTXG00000002799) #31	CLCN3 (ENSPTXG00000002803) #32	NEK1 (ENSPTXG00000002823) #33	SH3RF1 (ENSPTXG00000002949) #34	CBR4 (ENSPTXG00000002953) #36	ENSPTXG00000002958 #37	ENSPTXG00000002965 #37	ENSPTXG00000002969
Mainland tiger snake	MODERN SPECIES	108																HAND2 (ENSNSUG00000011454) #22	SAP30 (ENSNSUG00000011453) #25	GALNT7 (ENSNSUG00000011317) #27	GALNTL6 (ENSNSUG00000011310) #28	ENSNSUG00000011309	AADAT (ENSNSUG00000011302) #29	MFAP3L (ENSNSUG00000011301) #30	ENSNSUG00000011300	HPF1 (ENSNSUG00000011298) #31	CLCN3 (ENSNSUG00000011052) #32	NEK1 (ENSNSUG00000011050) #33	SH3RF1 (ENSNSUG00000010950) #34	CBR4 (ENSNSUG00000010947) #36	PALLD (ENSNSUG00000010938) #37	ENSNSUG00000010937	ENSNSUG00000010935
Blue-lipped sea krait	MODERN SPECIES	5104																HAND2 (ENSLLTG00000007814) #22
Indian cobra	MODERN SPECIES	3	WWC2 (ENSNNAG00000007564)	DCTD (ENSNNAG00000007729)	TENM3 (ENSNNAG00000007811)	AGA (ENSNNAG00000007902)	NEIL3 (ENSNNAG00000007929) ##9	VEGFC (ENSNNAG00000007968)	SPCS3 (ENSNNAG00000008000)	ASB5 (ENSNNAG00000008020)	SPATA4 (ENSNNAG00000008079)	WDR17 (ENSNNAG00000008274)	GPM6A (ENSNNAG00000010745)	GLRA3 (ENSNNAG00000010772) #18	HPGD (ENSNNAG00000010823) #19	CEP44 (ENSNNAG00000010850) #20	FBXO8 (ENSNNAG00000010885) #21	HAND2 (ENSNNAG00000010908) #22	ENSNNAG00000010919	SAP30 (ENSNNAG00000010956) #25	ENSNNAG00000010984 #27	ENSNNAG00000011003 #27	GALNTL6 (ENSNNAG00000011025) #28	AADAT (ENSNNAG00000011084) #29	MFAP3L (ENSNNAG00000011151) #30	HPF1 (ENSNNAG00000011169) #31	CLCN3 (ENSNNAG00000011220) #32	NEK1 (ENSNNAG00000011401) #33	SH3RF1 (ENSNNAG00000011951) #34	CBR4 (ENSNNAG00000012002) #36	PALLD (ENSNNAG00000012120) #37	ENSNNAG00000013522	ENSNNAG00000013685
Lizard	MODERN SPECIES	2	DNAJC28 (ENSACAG00000004229)	TMEM50B (ENSACAG00000004223)	ENSACAG00000004221	ENSACAG00000042572	ENSACAG00000038368	ENSACAG00000037671	ENSACAG00000038146	GLRA3 (ENSACAG00000005650) #18	ENSACAG00000035451	HPGD (ENSACAG00000038052) #19	ENSACAG00000036397	ENSACAG00000037180	CEP44 (ENSACAG00000005564) #20	FBXO8 (ENSACAG00000005520) #21	ENSACAG00000035996	HAND2 (ENSACAG00000005500) #22	SCRG1 (ENSACAG00000041105) #23	SAP30 (ENSACAG00000005497) #25	HMGB2 (ENSACAG00000005480) #26	GALNT7 (ENSACAG00000005432) #27	ENSACAG00000034834	ENSACAG00000043349	C21orf62 (ENSACAG00000003249)	PAXBP1 (ENSACAG00000003196)	SYNJ1 (ENSACAG00000003006)	CFAP298 (ENSACAG00000002935)	ENSACAG00000002914	URB1 (ENSACAG00000002817)	MIS18A (ENSACAG00000002814)	HUNK (ENSACAG00000002743)	ENSACAG00000037328
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Archosauria	ANCESTRAL SPECIES	1	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188
Australian saltwater crocodile	MODERN SPECIES	33	ENSCPRG00005011479	ENSCPRG00005011461	AGA (ENSCPRG00005011436)	NEIL3 (ENSCPRG00005011433) ##9	VEGFC (ENSCPRG00005011429)	SPCS3 (ENSCPRG00005011423)	ASB5 (ENSCPRG00005011420)	SPATA4 (ENSCPRG00005011405)	WDR17 (ENSCPRG00005011361)	GPM6A (ENSCPRG00005011345)	ENSCPRG00005011335	GLRA3 (ENSCPRG00005011331) #18	ENSCPRG00005011327	CEP44 (ENSCPRG00005011324) #20	FBXO8 (ENSCPRG00005011320) #21	HAND2 (ENSCPRG00005011318) #22	SCRG1 (ENSCPRG00005011314) #23	SAP30 (ENSCPRG00005011312) #25	HMGB2 (ENSCPRG00005011309) #26	GALNT7 (ENSCPRG00005011291) #27	ENSCPRG00005011282 #28	ENSCPRG00005011276 #28	ENSCPRG00005011271	ENSCPRG00005011261 #29	ENSCPRG00005011248 #29	ENSCPRG00005011190 #29	MFAP3L (ENSCPRG00005011182) #30	HPF1 (ENSCPRG00005011172) #31	CLCN3 (ENSCPRG00005011159) #32	NEK1 (ENSCPRG00005011096) #33	SH3RF1 (ENSCPRG00005011088) #34
Aves	ANCESTRAL SPECIES	3	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000165556
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000165556
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000167073
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00960000190177
Pink-footed goose	MODERN SPECIES	217												HPGD (ENSABRG00000008393) #19	CEP44 (ENSABRG00000008374) #20	FBXO8 (ENSABRG00000008368) #21	ENSABRG00000008343	HAND2 (ENSABRG00000008332) #22	SCRG1 (ENSABRG00000008317) #23	SAP30 (ENSABRG00000008310) #25	HMGB2 (ENSABRG00000008302) #26	GALNT7 (ENSABRG00000008264) #27	ENSABRG00000008245	GALNTL6 (ENSABRG00000008224) #28
Duck	MODERN SPECIES	1560																HAND2 (ENSAPLG00000007863) #22
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000017018.b	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00940000153230.A ##9	ENSGT00950000183045.C	ENSGT01030000234566.e.b.a.a	ENSGT00910000148572	ENSGT00940000153676.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000161922.i.b.b	ENSGT00940000161922.i.b.a	ENSGT00940000158376	ENSGT00940000158194
Japanese quail	MODERN SPECIES	22	AREG (ENSCJPG00005009972)	EREG (ENSCJPG00005009968)	EPGN (ENSCJPG00005009967)	MTHFD2L (ENSCJPG00005009966)	VEGFC (ENSCJPG00005009963)	SPCS3 (ENSCJPG00005009962)	ENSCJPG00005009961	ASB5 (ENSCJPG00005009960)	SPATA4 (ENSCJPG00005009959)	WDR17 (ENSCJPG00005009956)	GPM6A (ENSCJPG00005009954)	GLRA3 (ENSCJPG00005009946) #18	HPGD (ENSCJPG00005009938) #19	CEP44 (ENSCJPG00005009932) #20	FBXO8 (ENSCJPG00005009931) #21	HAND2 (ENSCJPG00005009924) #22	SCRG1 (ENSCJPG00005009923) #23	SAP30 (ENSCJPG00005009922) #25	HMGB2 (ENSCJPG00005009916) #26	GALNT7 (ENSCJPG00005009913) #27	GALNTL6 (ENSCJPG00005009911) #28	NEIL3 (ENSCJPG00005009892) ##9	AGA (ENSCJPG00005009890)	ENSCJPG00005009875	ENSCJPG00005009627	ENSCJPG00005009622	DCTD (ENSCJPG00005009621)	WWC2 (ENSCJPG00005009619)	ENSCJPG00005009615	CDKN2AIP (ENSCJPG00005009613)	ING2 (ENSCJPG00005009611)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000017018.b	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00940000153230.A ##9	ENSGT00950000183045.C	ENSGT01030000234566.e.b.a.a	ENSGT00940000153676.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000161922.i.b.b	ENSGT00940000161922.i.b.a	ENSGT00940000158376	ENSGT00940000158194	ENSGT00390000015545
Chicken	MODERN SPECIES	33	AREG (ENSGALG00010003223)	EREG (ENSGALG00010003322)	EPGN (ENSGALG00010003315)	MTHFD2L (ENSGALG00010003303)	ENSGALG00010003278	VEGFC (ENSGALG00010003259)	SPCS3 (ENSGALG00010003442)	ASB5 (ENSGALG00010003412)	SPATA4 (ENSGALG00010003397)	WDR17 (ENSGALG00010003384)	GPM6A (ENSGALG00010003347)	GLRA3 (ENSGALG00010002656) #18	HPGD (ENSGALG00010002632) #19	CEP44 (ENSGALG00010002787) #20	FBXO8 (ENSGALG00010002779) #21	HAND2 (ENSGALG00010002982) #22	SCRG1 (ENSGALG00010002956) #23	SAP30 (ENSGALG00010002943) #25	HMGB2 (ENSGALG00010002939) #26	GALNT7 (ENSGALG00010002937) #27	ENSGALG00010002932	GALNTL6 (ENSGALG00010002926) #28	NEIL3 (ENSGALG00010004472) ##9	AGA (ENSGALG00010004457)	TENM3 (ENSGALG00010007480)	DCTD (ENSGALG00010007416)	WWC2 (ENSGALG00010007399)	ENSGALG00010008525	ENSGALG00010007394	CDKN2AIP (ENSGALG00010007376)	ING2 (ENSGALG00010007353)
Turkey	MODERN SPECIES	1149																ENSMGAG00000019533 #22
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000165556
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000157188	ENSGT00940000165556
Golden eagle	MODERN SPECIES		ENSACCG00020010270	WWC2 (ENSACCG00020010330)	DCTD (ENSACCG00020010359)	TENM3 (ENSACCG00020010429)	AGA (ENSACCG00020010484)	NEIL3 (ENSACCG00020010497) ##9	VEGFC (ENSACCG00020010512)	SPCS3 (ENSACCG00020010530)	ASB5 (ENSACCG00020010555)	WDR17 (ENSACCG00020010660)	GPM6A (ENSACCG00020010783)	GLRA3 (ENSACCG00020010806) #18	HPGD (ENSACCG00020010819) #19	CEP44 (ENSACCG00020010838) #20	FBXO8 (ENSACCG00020010854) #21	HAND2 (ENSACCG00020010872) #22	SCRG1 (ENSACCG00020010883) #23	SAP30 (ENSACCG00020010894) #25	HMGB2 (ENSACCG00020010908) #26	GALNT7 (ENSACCG00020010938) #27	GALNTL6 (ENSACCG00020010971) #28	AADAT (ENSACCG00020000281) #29	MFAP3L (ENSACCG00020000283) #30	HPF1 (ENSACCG00020000284) #31	CLCN3 (ENSACCG00020000290) #32	NEK1 (ENSACCG00020000402) #33	SH3RF1 (ENSACCG00020000503) #34	CBR4 (ENSACCG00020000523) #36	PALLD (ENSACCG00020000620) #37	DDX60 (ENSACCG00020001079)	ENSACCG00020001352
Kakapo	MODERN SPECIES	24	DCTD (ENSSHBG00005013251)	TENM3 (ENSSHBG00005013307)	AGA (ENSSHBG00005013414)	NEIL3 (ENSSHBG00005013429) ##9	ENSSHBG00005013439	VEGFC (ENSSHBG00005013455)	SPCS3 (ENSSHBG00005013467)	ASB5 (ENSSHBG00005013483)	ENSSHBG00005013504	ENSSHBG00005013523	GPM6A (ENSSHBG00005013531)	GLRA3 (ENSSHBG00005013547) #18	HPGD (ENSSHBG00005013562) #19	CEP44 (ENSSHBG00005013578) #20	FBXO8 (ENSSHBG00005013595) #21	HAND2 (ENSSHBG00005013605) #22	SCRG1 (ENSSHBG00005013612) #23	SAP30 (ENSSHBG00005013619) #25	HMGB2 (ENSSHBG00005013630) #26	ENSSHBG00005013638	GALNTL6 (ENSSHBG00005013651) #28	AADAT (ENSSHBG00005013662) #29	MFAP3L (ENSSHBG00005000503) #30	HPF1 (ENSSHBG00005000510) #31	CLCN3 (ENSSHBG00005005187) #32	NEK1 (ENSSHBG00005005255) #33	SH3RF1 (ENSSHBG00005005314) #34	CBR4 (ENSSHBG00005005334) #36	PALLD (ENSSHBG00005005690) #37	ENSSHBG00005008898	ENSSHBG00005008911
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000166775	ENSGT00940000160623
Great tit	MODERN SPECIES	23	WWC2 (ENSPMJG00000001943)	DCTD (ENSPMJG00000001934)	ENSPMJG00000001933	TENM3 (ENSPMJG00000001818)	AGA (ENSPMJG00000001779)	NEIL3 (ENSPMJG00000001773) ##9	SPCS3 (ENSPMJG00000001714)	ASB5 (ENSPMJG00000001700)	VEGFC (ENSPMJG00000001686)	WDR17 (ENSPMJG00000001630)	GPM6A (ENSPMJG00000001622)	GLRA3 (ENSPMJG00000001600) #18	HPGD (ENSPMJG00000001582) #19	CEP44 (ENSPMJG00000001567) #20	FBXO8 (ENSPMJG00000001560) #21	HAND2 (ENSPMJG00000001532) #22	SCRG1 (ENSPMJG00000001521) #23	SAP30 (ENSPMJG00000001518) #25	HMGB2 (ENSPMJG00000001512) #26	GALNT7 (ENSPMJG00000001488) #27	GALNTL6 (ENSPMJG00000001432) #28	AADAT (ENSPMJG00000001338) #29	MFAP3L (ENSPMJG00000001336) #30	ENSPMJG00000001293	HPF1 (ENSPMJG00000001262) #31	CLCN3 (ENSPMJG00000001231) #32	NEK1 (ENSPMJG00000001000) #33	SH3RF1 (ENSPMJG00000000989) #34	CBR4 (ENSPMJG00000000979) #36	PALLD (ENSPMJG00000000929) #37	ENSPMJG00000000767
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000166775	ENSGT00940000160623
Flycatcher	MODERN SPECIES	22	WWC2 (ENSFALG00000011638)	DCTD (ENSFALG00000027516)	ENSFALG00000025955	TENM3 (ENSFALG00000011630)	AGA (ENSFALG00000026144)	NEIL3 (ENSFALG00000011605) ##9	VEGFC (ENSFALG00000011590)	SPCS3 (ENSFALG00000024232)	ASB5 (ENSFALG00000011570)	WDR17 (ENSFALG00000011543)	GPM6A (ENSFALG00000025678)	GLRA3 (ENSFALG00000011516) #18	HPGD (ENSFALG00000025221) #19	CEP44 (ENSFALG00000011499) #20	FBXO8 (ENSFALG00000024067) #21	HAND2 (ENSFALG00000011490) #22	SCRG1 (ENSFALG00000011488) #23	SAP30 (ENSFALG00000011481) #25	HMGB2 (ENSFALG00000011474) #26	ENSFALG00000011458	GALNTL6 (ENSFALG00000011441) #28	AADAT (ENSFALG00000011425) #29	MFAP3L (ENSFALG00000026913) #30	HPF1 (ENSFALG00000011413) #31	CLCN3 (ENSFALG00000011405) #32	NEK1 (ENSFALG00000011390) #33	SH3RF1 (ENSFALG00000011380) #34	CBR4 (ENSFALG00000025399) #36	PALLD (ENSFALG00000025066) #37	ANXA10 (ENSFALG00000011340)	SPOCK3 (ENSFALG00000011321)
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000166775	ENSGT00940000160623
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37	ENSGT00940000166775	ENSGT00940000160623
Common canary	MODERN SPECIES	2	DCTD (ENSSCAG00000010024)	ENSSCAG00000010030	ENSSCAG00000010063	ENSSCAG00000010138	AGA (ENSSCAG00000010144)	NEIL3 (ENSSCAG00000010148) ##9	VEGFC (ENSSCAG00000010159)	SPCS3 (ENSSCAG00000010167)	ASB5 (ENSSCAG00000010170)	WDR17 (ENSSCAG00000010175)	GPM6A (ENSSCAG00000010193)	GLRA3 (ENSSCAG00000010203) #18	HPGD (ENSSCAG00000010216) #19	CEP44 (ENSSCAG00000010219) #20	FBXO8 (ENSSCAG00000010222) #21	HAND2 (ENSSCAG00000010229) #22	SCRG1 (ENSSCAG00000010237) #23	SAP30 (ENSSCAG00000010239) #25	HMGB2 (ENSSCAG00000010243) #26	GALNT7 (ENSSCAG00000010245) #27	GALNTL6 (ENSSCAG00000010253) #28	AADAT (ENSSCAG00000010261) #29	MFAP3L (ENSSCAG00000010267) #30	HPF1 (ENSSCAG00000010268) #31	CLCN3 (ENSSCAG00000010271) #32	NEK1 (ENSSCAG00000010284) #33	SH3RF1 (ENSSCAG00000010309) #34	CBR4 (ENSSCAG00000010314) #36	PALLD (ENSSCAG00000010362) #37	ANXA10 (ENSSCAG00000010482)	SPOCK3 (ENSSCAG00000010508)
Zebra finch	MODERN SPECIES	25	WWC2 (ENSTGUG00000006543)	DCTD (ENSTGUG00000006536)	TENM3 (ENSTGUG00000006481)	AGA (ENSTGUG00000006468)	NEIL3 (ENSTGUG00000006458) ##9	VEGFC (ENSTGUG00000006451)	SPCS3 (ENSTGUG00000006441)	ASB5 (ENSTGUG00000006421)	WDR17 (ENSTGUG00000006388)	GPM6A (ENSTGUG00000006358)	GLRA3 (ENSTGUG00000006325) #18	HPGD (ENSTGUG00000006311) #19	CEP44 (ENSTGUG00000006297) #20	FBXO8 (ENSTGUG00000006285) #21	ENSTGUG00000027176	HAND2 (ENSTGUG00000006281) #22	SCRG1 (ENSTGUG00000006280) #23	SAP30 (ENSTGUG00000006275) #25	HMGB2 (ENSTGUG00000006267) #26	GALNT7 (ENSTGUG00000006243) #27	GALNTL6 (ENSTGUG00000006232) #28	AADAT (ENSTGUG00000006219) #29	MFAP3L (ENSTGUG00000027066) #30	HPF1 (ENSTGUG00000006209) #31	CLCN3 (ENSTGUG00000006161) #32	NEK1 (ENSTGUG00000006124) #33	SH3RF1 (ENSTGUG00000006100) #34	CBR4 (ENSTGUG00000025799) #36	PALLD (ENSTGUG00000006061) #37	ENSTGUG00000027586	ANXA10 (ENSTGUG00000006030)
Medium ground finch	MODERN SPECIES		WWC2 (ENSGFOG00000007703)	DCTD (ENSGFOG00000007713)	TENM3 (ENSGFOG00000007869)	ENSGFOG00000010900	AGA (ENSGFOG00000010904)	NEIL3 (ENSGFOG00000010910) ##9	VEGFC (ENSGFOG00000010919)	SPCS3 (ENSGFOG00000010925)	ASB5 (ENSGFOG00000010931)	WDR17 (ENSGFOG00000010966)	GPM6A (ENSGFOG00000011465)	GLRA3 (ENSGFOG00000011470) #18	HPGD (ENSGFOG00000011504) #19	CEP44 (ENSGFOG00000011514) #20	FBXO8 (ENSGFOG00000011522) #21	HAND2 (ENSGFOG00000000006) #22	SCRG1 (ENSGFOG00000000150) #23	SAP30 (ENSGFOG00000000154) #25	HMGB2 (ENSGFOG00000000158) #26	GALNT7 (ENSGFOG00000000167) #27	GALNTL6 (ENSGFOG00000000182) #28	AADAT (ENSGFOG00000000202) #29	MFAP3L (ENSGFOG00000000209) #30	HPF1 (ENSGFOG00000000212) #31	CLCN3 (ENSGFOG00000000217) #32	NEK1 (ENSGFOG00000000236) #33	SH3RF1 (ENSGFOG00000000301) #34	CBR4 (ENSGFOG00000000307) #36	PALLD (ENSGFOG00000000415) #37	ANXA10 (ENSGFOG00000001171)	SPOCK3 (ENSGFOG00000001186)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
Emydidae	ANCESTRAL SPECIES	1	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000168298	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a #37
painted turtle	MODERN SPECIES	733															FBXO8 (ENSCPBG00000002750) #21	HAND2 (ENSCPBG00000002725) #22	SCRG1 (ENSCPBG00000002706) #23	SAP30 (ENSCPBG00000002695) #25	HMGB2 (ENSCPBG00000002686) #26	GALNT7 (ENSCPBG00000002652) #27	ENSCPBG00000002502 #28	ENSCPBG00000002476 #28	ENSCPBG00000002461	ENSCPBG00000002453	ENSCPBG00000002441	GRIA1 (ENSCPBG00000002377)	ENSCPBG00000002354	FAM114A2 (ENSCPBG00000002319)	MFAP3 (ENSCPBG00000002287) ##30	GALNT10 (ENSCPBG00000002247)	SAP30L (ENSCPBG00000002229) ##25
Three-toed box turtle	MODERN SPECIES	26	WWC2 (ENSTMTG00000005538)	DCTD (ENSTMTG00000005516)	TENM3 (ENSTMTG00000005465)	AGA (ENSTMTG00000005446)	ENSTMTG00000005431	VEGFC (ENSTMTG00000005414)	SPCS3 (ENSTMTG00000005407)	ASB5 (ENSTMTG00000005377)	SPATA4 (ENSTMTG00000005358)	WDR17 (ENSTMTG00000005197)	GPM6A (ENSTMTG00000005149)	GLRA3 (ENSTMTG00000005114) #18	HPGD (ENSTMTG00000005087) #19	CEP44 (ENSTMTG00000004951) #20	FBXO8 (ENSTMTG00000004929) #21	HAND2 (ENSTMTG00000004921) #22	SCRG1 (ENSTMTG00000004909) #23	SAP30 (ENSTMTG00000004897) #25	HMGB2 (ENSTMTG00000004883) #26	GALNT7 (ENSTMTG00000004870) #27	ENSTMTG00000004848	ENSTMTG00000004816 #28	ENSTMTG00000004787 #28	ENSTMTG00000004740 #29	ENSTMTG00000004299 #29	MFAP3L (ENSTMTG00000004256) #30	HPF1 (ENSTMTG00000004238) #31	CLCN3 (ENSTMTG00000004179) #32	NEK1 (ENSTMTG00000003707) #33	SH3RF1 (ENSTMTG00000003623) #34	CBR4 (ENSTMTG00000003604) #36
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000004594.a #29	ENSGT00390000004594.b #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT01000000217744	ENSGT00940000153441.a.a.cb #37	ENSGT00940000153441.a.a.bb #37
Abingdon island giant tortoise	MODERN SPECIES	717												GLRA3 (ENSCABG00000002225) #18	HPGD (ENSCABG00000002227) #19	CEP44 (ENSCABG00000002231) #20	FBXO8 (ENSCABG00000002233) #21	HAND2 (ENSCABG00000002234) #22	SCRG1 (ENSCABG00000002236) #23	SAP30 (ENSCABG00000002238) #25	HMGB2 (ENSCABG00000002239) #26	GALNT7 (ENSCABG00000002243) #27	ENSCABG00000002371 #28	POGLUT3 (ENSCABG00000002374)	EXPH5 (ENSCABG00000002376)	DDX10 (ENSCABG00000002399)
Goode s thornscrub tortoise	MODERN SPECIES	19	ENSGEVG00005003226	DCTD (ENSGEVG00005003233)	ENSGEVG00005003257	AGA (ENSGEVG00005003296)	ENSGEVG00005003316	VEGFC (ENSGEVG00005003328)	SPCS3 (ENSGEVG00005003340)	ASB5 (ENSGEVG00005003356)	SPATA4 (ENSGEVG00005003382)	WDR17 (ENSGEVG00005003558)	GPM6A (ENSGEVG00005003929)	GLRA3 (ENSGEVG00005003944) #18	HPGD (ENSGEVG00005003961) #19	CEP44 (ENSGEVG00005003971) #20	FBXO8 (ENSGEVG00005004010) #21	HAND2 (ENSGEVG00005004018) #22	SCRG1 (ENSGEVG00005004025) #23	SAP30 (ENSGEVG00005004034) #25	HMGB2 (ENSGEVG00005004044) #26	GALNT7 (ENSGEVG00005004062) #27	ENSGEVG00005004085 #28	ENSGEVG00005004102 #28	ENSGEVG00005004144 #29	ENSGEVG00005004201 #29	MFAP3L (ENSGEVG00005004240) #30	HPF1 (ENSGEVG00005004257) #31	CLCN3 (ENSGEVG00005004287) #32	NEK1 (ENSGEVG00005004393) #33	SH3RF1 (ENSGEVG00005004432) #34	ENSGEVG00005004456	ENSGEVG00005004489 #37
Chinese turtle	MODERN SPECIES	1338										GLRA3 (ENSPSIG00000013405) #18	HPGD (ENSPSIG00000013013) #19	ENSPSIG00000012981	CEP44 (ENSPSIG00000012942) #20	FBXO8 (ENSPSIG00000012819) #21	ENSPSIG00000000555	HAND2 (ENSPSIG00000012804) #22	SCRG1 (ENSPSIG00000012751) #23	SAP30 (ENSPSIG00000012745) #25	HMGB2 (ENSPSIG00000012526) #26	GALNT7 (ENSPSIG00000011937) #27	ENSPSIG00000011202 #28	ENSPSIG00000011200 #28
Anura	ANCESTRAL SPECIES	2	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00390000006633.b #25	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038.b #28	ENSGT00390000004594 #29	ENSGT00390000011576.a #30	ENSGT00390000014876 #31	ENSGT00940000153763.b #32	ENSGT00940000158460 #33	ENSGT00940000155875 #34	ENSGT00940000157620 #36	ENSGT00940000153441.a.a.b #37	ENSGT00940000157188	ENSGT00940000160623
Frog	MODERN SPECIES		aga (ENSXETG00000009427)	neil3 (ENSXETG00000030606) ##9	ENSXETG00000043475	vegfc (ENSXETG00000002447)	ENSXETG00000043390	spcs3 (ENSXETG00000036663)	asb5 (ENSXETG00000040581)	spata4 (ENSXETG00000038630)	wdr17 (ENSXETG00000002453)	gpm6a (ENSXETG00000036810)	ENSXETG00000041411	glra3 (ENSXETG00000002460) #18	cep44 (ENSXETG00000032956) #20	fbxo8 (ENSXETG00000016906) #21	ENSXETG00000045901	hand2 (ENSXETG00000016908) #22	scrg1 (ENSXETG00000036235) #23	hmgb2 (ENSXETG00000016916) #26	sap30 (ENSXETG00000016915) #25	galnt7 (ENSXETG00000016917) #27	ENSXETG00000047064	galntl6 (ENSXETG00000016922) #28	ENSXETG00000043847	aadat (ENSXETG00000023143) #29	hpf1 (ENSXETG00000023144) #30	clcn3 (ENSXETG00000023146) #32	nek1 (ENSXETG00000023155) #33	sh3rf1 (ENSXETG00000004943) #34	cbr4 (ENSXETG00000004944) #36	palld (ENSXETG00000033874) #37	ENSXETG00000043858
Leishan spiny toad	MODERN SPECIES		VEGFC (ENSLLEG00000018299)	ENSLLEG00000018286	SPCS3 (ENSLLEG00000018192)	ASB5 (ENSLLEG00000017956)	ENSLLEG00000017850	ENSLLEG00000017373	ENSLLEG00000017316	WDR17 (ENSLLEG00000016137)	GPM6A (ENSLLEG00000015714)	GLRA3 (ENSLLEG00000014704) #18	HPGD (ENSLLEG00000014587) #19	CEP44 (ENSLLEG00000014485) #20	FBXO8 (ENSLLEG00000014415) #21	ENSLLEG00000014388	ENSLLEG00000014375	HAND2 (ENSLLEG00000014340) #22	SCRG1 (ENSLLEG00000014306) #23	SAP30 (ENSLLEG00000014265) #25	ENSLLEG00000014244	ENSLLEG00000014150 #26	ENSLLEG00000014104	GALNT7 (ENSLLEG00000013592) #27	ENSLLEG00000013502	ENSLLEG00000013447	ENSLLEG00000013404	ENSLLEG00000013222 #28	ENSLLEG00000013195	ENSLLEG00000013182	ENSLLEG00000013127 #28	ENSLLEG00000013100	ENSLLEG00000013079
Coelacanth	MODERN SPECIES	368										GLRA3 (ENSLACG00000015183) #18	ENSLACG00000014755	HPGD (ENSLACG00000022523) #19	CEP44 (ENSLACG00000013177) #20	FBXO8 (ENSLACG00000012723) #21	ENSLACG00000011377	HAND2 (ENSLACG00000004329) #22
Actinopterygii	ANCESTRAL SPECIES	21	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00980000202608	ENSGT00510000046787.e.a
Neopterygii	ANCESTRAL SPECIES	2	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000153230.A ##9	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00980000202608	ENSGT00510000046787.e.a	ENSGT00400000023138	ENSGT00980000202596	ENSGT00390000017018.b	ENSGT00390000011365.b	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633
Osteoglossocephalai	ANCESTRAL SPECIES	14	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a	ENSGT01030000234566.f	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a	ENSGT01000000220882	ENSGT00940000156074.a.b	ENSGT00940000153745.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a
Clupeocephala	ANCESTRAL SPECIES	26	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660
Euteleosteomorpha	ANCESTRAL SPECIES	247		ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28
Protacanthopterygii	ANCESTRAL SPECIES	41	ENSGT01090000260176	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00390000006915.d.i	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT01080000257488	ENSGT00940000154986.b	ENSGT00940000177316	ENSGT00390000017709	ENSGT00390000016644	ENSGT00950000182936.a.a.b.a	ENSGT00940000155694.g	ENSGT00390000018433	ENSGT00940000154778.d	ENSGT01050000244827.C.c.b	ENSGT00940000154778.c.a
Salmoninae	ANCESTRAL SPECIES	460	ENSGT00410000025556.a.a.a.b.c.b.b	ENSGT00940000153676.a.w.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A.i.b.b	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368.f.b #18	ENSGT00390000006915.d.i	ENSGT00940000158368.e #18	ENSGT00940000154593.a.b.e #19	ENSGT00390000009873.d #20	ENSGT00390000009873.c.a #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191.a.a #23	ENSGT00940000154466.ec #26	ENSGT00390000009191.b #23	ENSGT00940000154466.dc.b #26	ENSGT00940000158105 #27	ENSGT00940000155038.sc.a #28
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	84	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a	ENSGT00940000153676.a.w.b	ENSGT01030000234566.e.b.a.a.a.a.a	ENSGT00940000156167.b.d	ENSGT00390000009223.nb	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368.f.b #18	ENSGT00390000006915.d.i	ENSGT00940000158368.e #18	ENSGT00940000154593.a.b.e #19	ENSGT00390000009873.c.a #20	ENSGT00940000158356 #21	ENSGT00940000160772.c #22	ENSGT00390000009191.a.a #23	ENSGT00940000154466.ec #26	ENSGT00390000009191.b #23	ENSGT00940000154466.dc.b #26	ENSGT00940000158105 #27	ENSGT00940000155038.sc.a #28	ENSGT01080000257488	ENSGT00940000154986.b.d	ENSGT00390000017709.f	ENSGT00390000016644.h	ENSGT00940000177316.g	ENSGT00940000154986.b.c	ENSGT00390000017709.e	ENSGT00390000016644.g	ENSGT00950000182936.a.a.b.a
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a.a	ENSGT00410000025556.a.a.a.b.c.b.a.a	ENSGT00940000153676.a.w.b	ENSGT01030000234566.e.b.a.a.a.a.a.b	ENSGT01030000234566.e.b.a.a.a.a.a.a	ENSGT00940000156167.b.d	ENSGT00390000009223.nb	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.p	ENSGT00390000006915.d.j.a	ENSGT00940000158368.e.a #18	ENSGT00940000154593.a.b.e.c #19	ENSGT00390000009873.c.a #20	ENSGT00940000158356.i.a #21	ENSGT00940000160772.c #22	ENSGT00390000009191.a.a.a #23	ENSGT00940000154466.dc.b.a #26	ENSGT00940000158105.o #27	ENSGT00940000155038.sc.b #28	ENSGT01080000257488.e	ENSGT00940000177316.g	ENSGT00940000154986.b.c.b	ENSGT00390000017709.f	ENSGT00940000154986.b.d	ENSGT00390000017709.e	ENSGT00390000016644.g	ENSGT00950000182936.a.a.b.a.l	ENSGT00940000155694.g.i	ENSGT00390000018433.j.a.b	ENSGT01050000244827.C.c.b.c
Rainbow trout	MODERN SPECIES	10	WWC2 (ENSOMYG00000020577)	dctd (ENSOMYG00000073078)	TENM3 (ENSOMYG00000019844)	vegfc (ENSOMYG00000019522)	ENSOMYG00000065035	spcs3 (ENSOMYG00000019520)	asb5b (ENSOMYG00000019512)	wdr17 (ENSOMYG00000017900)	ENSOMYG00000067119	gpm6ab (ENSOMYG00000017609)	glra3 (ENSOMYG00000017336) #18	hpgd (ENSOMYG00000017310) #19	cep44 (ENSOMYG00000017279) #20	fbxo8 (ENSOMYG00000017247) #21	ENSOMYG00000048016	hand2 (ENSOMYG00000017232) #22	SCRG1 (ENSOMYG00000017225) #23	hmgb2a (ENSOMYG00000017209) #26	galnt7 (ENSOMYG00000016502) #27	ENSOMYG00000070850	galntl6 (ENSOMYG00000016271) #28	tmem154 (ENSOMYG00000016234)	ENSOMYG00000067149	FBXW7 (ENSOMYG00000016200)	dctpp1 (ENSOMYG00000016189)	gatb (ENSOMYG00000016150)	ENSOMYG00000058088	FHIP1A (ENSOMYG00000016136)	sh3d19 (ENSOMYG00000016130)	RPS3A (ENSOMYG00000016107)	ENSOMYG00000053185
Oncorhynchus_a	ANCESTRAL SPECIES	104							ENSGT00940000156167.b.d	ENSGT00390000009223.nb	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.p	ENSGT00390000006915.d.j.a	ENSGT00940000158368.e.a #18	ENSGT00940000154593.a.b.e.c #19	ENSGT00390000009873.c.a #20	ENSGT00940000158356.i.a #21	ENSGT00940000160772.c #22	ENSGT00390000009191.a.a.a #23	ENSGT00940000154466.dc.b.a.a #26	ENSGT00940000158105.o #27	ENSGT00940000155038.sc.b #28	ENSGT01080000257488.e	ENSGT00940000177316.g	ENSGT00940000154986.b.c.a.a	ENSGT00390000016644.g	ENSGT00950000182936.a.a.b.a.l	ENSGT00940000155694.g.i	ENSGT00390000018433.j.a.b	ENSGT01050000244827.C.c.b.c	ENSGT00940000154778.c.a.g.a	ENSGT00940000154895.b.g.a.b	ENSGT00940000154895.b.g.a.a.a
Coho salmon	MODERN SPECIES	27	dctd (ENSOKIG00005010629)	TENM3 (ENSOKIG00005010263)	ENSOKIG00005010193	ENSOKIG00005010192	vegfc (ENSOKIG00005010178)	spcs3 (ENSOKIG00005010167)	asb5b (ENSOKIG00005010139)	wdr17 (ENSOKIG00005008293)	GPM6A (ENSOKIG00005008116)	ENSOKIG00005008099	ENSOKIG00005008095	glra3 (ENSOKIG00005007473) #18	hpgd (ENSOKIG00005007435) #19	cep44 (ENSOKIG00005007428) #20	fbxo8 (ENSOKIG00005007411) #21	hand2 (ENSOKIG00005007398) #22	SCRG1 (ENSOKIG00005007387) #23	hmgb2a (ENSOKIG00005007373) #26	galnt7 (ENSOKIG00005006633) #27	galntl6 (ENSOKIG00005006403) #28	tmem154 (ENSOKIG00005006377)	ENSOKIG00005006365	FBXW7 (ENSOKIG00005005600)	gatb (ENSOKIG00005005233)	FHIP1A (ENSOKIG00005005178)	sh3d19 (ENSOKIG00005005145)	rps3a (ENSOKIG00005005114)	ENSOKIG00005005105	LRBA (ENSOKIG00005004112)	ENSOKIG00005003839	nr3c2 (ENSOKIG00005003769)
Chinook salmon	MODERN SPECIES	2	ENSOTSG00005015651	ENSOTSG00005015648	ENSOTSG00005015645	ENSOTSG00005015642	ENSOTSG00005015640	ENSOTSG00005015638	ENSOTSG00005015637	ENSOTSG00005015636	tenm3 (ENSOTSG00005015633)	GPM6A (ENSOTSG00005015630)	glra3 (ENSOTSG00005015628) #18	hpgd (ENSOTSG00005015627) #19	cep44 (ENSOTSG00005015626) #20	fbxo8 (ENSOTSG00005015625) #21	ENSOTSG00005015624	hand2 (ENSOTSG00005015623) #22	SCRG1 (ENSOTSG00005015619) #23	hmgb2a (ENSOTSG00005015617) #26	galnt7 (ENSOTSG00005015136) #27	ENSOTSG00005015130	galntl6 (ENSOTSG00005015099) #28	tmem154 (ENSOTSG00005015097)	ENSOTSG00005015096	FBXW7 (ENSOTSG00005015094)	dctpp1 (ENSOTSG00005015093)	gatb (ENSOTSG00005015091)	FHIP1A (ENSOTSG00005015088)	sh3d19 (ENSOTSG00005015085)	rps3a (ENSOTSG00005015074)	ednraa (ENSOTSG00005015065)	tmem184c (ENSOTSG00005014994)
Salmo	ANCESTRAL SPECIES	86	ENSGT01090000260176.b.a.a	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT01030000234576.D.a.b.b.f.b.a	ENSGT00410000025556.a.a.a.b.c.b.b	ENSGT00940000153676.a.w.a.b	ENSGT01030000234566.e.b.a.a.a.a.b	ENSGT00940000156167.b.c	ENSGT00390000009223.ob	ENSGT00940000165059.A.i.b.b	ENSGT00940000158602.n	ENSGT00390000006915.d.j.a.f	ENSGT00940000158368.f.a #18	ENSGT00940000154593.a.b.e.a #19	ENSGT00390000009873.d #20	ENSGT00940000158356.h #21	ENSGT00940000160772.c #22	ENSGT00390000009191.b #23	ENSGT00390000009191.a.a #23	ENSGT00940000154466.dc.b #26	ENSGT00940000158105.q.a #27	ENSGT00940000155038.sc.a #28	ENSGT01080000257488.c	ENSGT00940000177316.g	ENSGT00940000154986.b.c	ENSGT00390000017709.e.a	ENSGT00390000016644.g	ENSGT00950000182936.a.a.b.a.i	ENSGT00940000155694.g.g	ENSGT00390000018433.i.b	ENSGT01050000244827.C.c.b.c	ENSGT00940000154895.b.g.a.a.b
Atlantic salmon	MODERN SPECIES	23	WWC2 (ENSSSAG00000070262)	DCTD (ENSSSAG00000070252)	TENM3 (ENSSSAG00000056252)	ENSSSAG00000109209	vegfc (ENSSSAG00000055981)	SPCS3 (ENSSSAG00000055976)	asb5b (ENSSSAG00000055967)	wdr17 (ENSSSAG00000055196)	GPM6A (ENSSSAG00000054788)	glra3 (ENSSSAG00000054688) #18	PGDH (ENSSSAG00000054647) #19	ENSSSAG00000082929	ENSSSAG00000086498	cep44 (ENSSSAG00000054633) #20	fbxo8 (ENSSSAG00000090818) #21	hand2 (ENSSSAG00000087050) #22	SCRG1 (ENSSSAG00000108079) #23	hmgb2a (ENSSSAG00000054548) #26	galnt7 (ENSSSAG00000069362) #27	galntl6 (ENSSSAG00000069430) #28	tmem154 (ENSSSAG00000069445)	FBXW7 (ENSSSAG00000052138)	dctpp1 (ENSSSAG00000053600)	gatb (ENSSSAG00000107916)	FHIP1A (ENSSSAG00000053551)	sh3d19 (ENSSSAG00000052054)	RPS3A (ENSSSAG00000052007)	LRBA (ENSSSAG00000010768)	ENSSSAG00000005000	nr3c2 (ENSSSAG00000087524)	arhgap10 (ENSSSAG00000095725)
River trout	DUPLICATION
River trout	MODERN SPECIES	2	xpa (ENSSTUG00000026759)	saraf (ENSSTUG00000026768)	WWC2 (ENSSTUG00000026786)	dctd (ENSSTUG00000026843)	ENSSTUG00000026874	TENM3 (ENSSTUG00000026979)	vegfc (ENSSTUG00000031965)	spcs3 (ENSSTUG00000031980)	asb5b (ENSSTUG00000031996)	wdr17 (ENSSTUG00000032125)	GPM6A (ENSSTUG00000034275)	glra3 (ENSSTUG00000034335) #18	hpgd (ENSSTUG00000034473) #19	cep44 (ENSSTUG00000034489) #20	fbxo8 (ENSSTUG00000034503) #21	hand2 (ENSSTUG00000034578) #22	SCRG1 (ENSSTUG00000034605) #23	hmgb2a (ENSSTUG00000034628) #26	galnt7 (ENSSTUG00000034671) #27	galntl6 (ENSSTUG00000034992) #28	ENSSTUG00000035124	tmem154 (ENSSTUG00000035130)	FBXW7 (ENSSTUG00000035149)	dctpp1 (ENSSTUG00000035164)	gatb (ENSSTUG00000035179)	FHIP1A (ENSSTUG00000035396)	sh3d19 (ENSSTUG00000035445)	rps3a (ENSSTUG00000000966)	LRBA (ENSSTUG00000001959)	mab21l2 (ENSSTUG00000008895)	ENSSTUG00000008928
River trout	MODERN SPECIES	33	dctd (ENSSTUG00000013750)	TENM3 (ENSSTUG00000012215)	ENSSTUG00000012149	ENSSTUG00000012137	vegfc (ENSSTUG00000012123)	spcs3 (ENSSTUG00000012094)	ENSSTUG00000012089	asb5b (ENSSTUG00000012082)	wdr17 (ENSSTUG00000010168)	GPM6A (ENSSTUG00000009919)	glra3 (ENSSTUG00000009347) #18	ENSSTUG00000009328	hpgd (ENSSTUG00000009308) #19	cep44 (ENSSTUG00000009293) #20	fbxo8 (ENSSTUG00000009240) #21	hand2 (ENSSTUG00000009220) #22	SCRG1 (ENSSTUG00000009216) #23	hmgb2a (ENSSTUG00000009209) #26	galnt7 (ENSSTUG00000008745) #27	galntl6 (ENSSTUG00000008558) #28	tmem154 (ENSSTUG00000008531)	ENSSTUG00000008525	FBXW7 (ENSSTUG00000008059)	dctpp1 (ENSSTUG00000008047)	gatb (ENSSTUG00000007485)	FHIP1A (ENSSTUG00000007417)	sh3d19 (ENSSTUG00000007399)	rps3a (ENSSTUG00000007367)	mab21l2 (ENSSTUG00000007361)	LRBA (ENSSTUG00000005372)	ENSSTUG00000003670
Salmoninae_a	ANCESTRAL SPECIES	358																ENSGT00940000160772.d #22	ENSGT00390000009191.a.b #23	ENSGT00940000154466.dc.a #26
Oncorhynchus	ANCESTRAL SPECIES	92					ENSGT00940000153676.a.w.a.b	ENSGT01030000234566.e.b.a.a.a.a.b	ENSGT00940000156167.b.c	ENSGT00390000009223.ob	ENSGT00940000165059.A.i.b.b.a	ENSGT00940000158602.o	ENSGT00390000006915.d.i	ENSGT00940000158368.e.b #18	ENSGT00940000154593.a.b.e.d #19	ENSGT00390000009873.c.b #20	ENSGT00940000158356.i.b #21	ENSGT00940000160772.d #22	ENSGT00390000009191.a.a.b #23	ENSGT00940000154466.ec #26	ENSGT00940000154466.dc.a #26	ENSGT00940000158105.p #27	ENSGT00940000155038.rc.b #28	ENSGT00390000016644.h	ENSGT00950000182936.a.a.b.a.k	ENSGT00940000155694.g.j	ENSGT00390000018433.j.a.a	ENSGT00940000154778.c.a.g.a	ENSGT01050000244827.C.c.b.d	ENSGT00940000154895.b.g.b.a	ENSGT00940000154778.c.b	ENSGT00940000154895.b.g.a.a.b	ENSGT00940000159333.l.b
Rainbow trout	MODERN SPECIES	1	TENM3 (ENSOMYG00000005360)	ENSOMYG00000055329	ENSOMYG00000051477	vegfc (ENSOMYG00000006060)	ENSOMYG00000061786	spcs3 (ENSOMYG00000006116)	asb5b (ENSOMYG00000006164)	ENSOMYG00000056256	wdr17 (ENSOMYG00000006843)	GPM6A (ENSOMYG00000007055)	glra3 (ENSOMYG00000007086) #18	ENSOMYG00000052045	hpgd (ENSOMYG00000007107) #19	cep44 (ENSOMYG00000007156) #20	fbxo8 (ENSOMYG00000007223) #21	hand2 (ENSOMYG00000007252) #22	SCRG1 (ENSOMYG00000007352) #23	hmgb2a (ENSOMYG00000007312) #26	galnt7 (ENSOMYG00000007549) #27	galntl6 (ENSOMYG00000007898) #28	tmem154 (ENSOMYG00000008311)	ENSOMYG00000074693	FBXW7 (ENSOMYG00000008634)	dctpp1 (ENSOMYG00000056431)	gatb (ENSOMYG00000009146)	FHIP1A (ENSOMYG00000009332)	sh3d19 (ENSOMYG00000009382)	RPS3A (ENSOMYG00000009413)	LRBA (ENSOMYG00000009860)	mab21l2 (ENSOMYG00000060641)	ENSOMYG00000060018
Oncorhynchus_a	ANCESTRAL SPECIES	88				ENSGT01030000234566.e.b.a.a.a.a.b	ENSGT00940000156167.b.c	ENSGT00390000009223.ob	ENSGT00940000165059.A.i.b.b.a	ENSGT00940000158602.o	ENSGT00390000006915.d.i	ENSGT00940000158368.e.b #18	ENSGT00940000154593.a.b.e.d #19	ENSGT00390000009873.d #20	ENSGT00940000158356.j #21	ENSGT00390000009873.c.b #20	ENSGT00940000158356.i.b #21	ENSGT00940000160772.d #22	ENSGT00390000009191.a.b #23	ENSGT00940000154466.dc.b.b #26	ENSGT00940000158105.p #27	ENSGT00940000155038.sc.a #28	ENSGT01080000257488.f	ENSGT00940000154986.b.c.b	ENSGT00390000017709.f	ENSGT00390000016644.h	ENSGT00950000182936.a.a.b.a.k	ENSGT00940000155694.g.j	ENSGT00390000018433.j.a.a	ENSGT01050000244827.C.c.b.d	ENSGT00940000154895.b.g.a.a.b	ENSGT00940000159333.l.b	ENSGT00940000159559.j
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005018651	ENSOTSG00005018654	ENSOTSG00005018669	ENSOTSG00005018675	ENSOTSG00005006826	ENSOTSG00005006828	ENSOTSG00005006829	dctd (ENSOTSG00005006831)	ENSOTSG00005006832	ENSOTSG00005006834	gpm6ab (ENSOTSG00005006835)	glra3 (ENSOTSG00005006844) #18	hpgd (ENSOTSG00005007795) #19	cep44 (ENSOTSG00005007796) #20	fbxo8 (ENSOTSG00005007800) #21	hand2 (ENSOTSG00005007802) #22	SCRG1 (ENSOTSG00005007804) #23	hmgb2a (ENSOTSG00005007805) #26	galnt7 (ENSOTSG00005007810) #27	galntl6 (ENSOTSG00005008288) #28	ENSOTSG00005008290 #28	ENSOTSG00005008293	dnajb1b (ENSOTSG00005008296)	ENSOTSG00005008297	ENSOTSG00005008298	ENSOTSG00005008299	smad1 (ENSOTSG00005008301)	abce1 (ENSOTSG00005008324)	pkd2 (ENSOTSG00005008380)	uso1 (ENSOTSG00005008382)	ENSOTSG00005008389
Coho salmon	MODERN SPECIES	3	ENSOKIG00005020241	ENSOKIG00005020253	WWC2 (ENSOKIG00005020298)	dctd (ENSOKIG00005020428)	TENM3 (ENSOKIG00005020509)	vegfc (ENSOKIG00005021044)	spcs3 (ENSOKIG00005021064)	asb5b (ENSOKIG00005011907)	wdr17 (ENSOKIG00005011968)	GPM6A (ENSOKIG00005012161)	ENSOKIG00005012205	glra3 (ENSOKIG00005012250) #18	hpgd (ENSOKIG00005012957) #19	cep44 (ENSOKIG00005012964) #20	fbxo8 (ENSOKIG00005012974) #21	hand2 (ENSOKIG00005013007) #22	SCRG1 (ENSOKIG00005012997) #23	hmgb2a (ENSOKIG00005013022) #26	galnt7 (ENSOKIG00005013068) #27	galntl6 (ENSOKIG00005013529) #28	tmem154 (ENSOKIG00005013868)	ENSOKIG00005013887	FBXW7 (ENSOKIG00005013917)	ENSOKIG00005014351	gatb (ENSOKIG00005014366)	dctpp1 (ENSOKIG00005014412)	FHIP1A (ENSOKIG00005014419)	sh3d19 (ENSOKIG00005014440)	rps3a (ENSOKIG00005014459)	LRBA (ENSOKIG00005014836)	ENSOKIG00005025156
Salmo	ANCESTRAL SPECIES	116	ENSGT01030000234576.D.a.b.b.f.a	ENSGT00390000002721.d.d	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a	ENSGT00940000153676.a.w.b	ENSGT01030000234566.e.b.a.a.a.a.a	ENSGT00940000156167.b.d	ENSGT00390000009223.nb.a	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.m	ENSGT00390000006915.d.j.a.e	ENSGT00940000158368.f.b #18	ENSGT00940000154593.a.b.e.b #19	ENSGT00390000009873.c.a #20	ENSGT00940000158356.g #21	ENSGT00940000160772.d #22	ENSGT00390000009191.a.b #23	ENSGT00940000154466.dc.a #26	ENSGT00940000158105.q.b #27	ENSGT00940000155038.sc.b #28	ENSGT01080000257488.d	ENSGT00940000154986.b.d	ENSGT00390000017709.e.b	ENSGT00390000016644.h	ENSGT00950000182936.a.a.b.a.j	ENSGT00940000155694.g.h	ENSGT00390000018433.i.a	ENSGT00940000154778.c.a	ENSGT01050000244827.C.c.b.d	ENSGT00940000154895.b.g.a.a.a	ENSGT00940000159333.l.a
Atlantic salmon	MODERN SPECIES	27	saraf (ENSSSAG00000063573)	WWC2 (ENSSSAG00000063590)	ENSSSAG00000037804	ENSSSAG00000097282	TENM3 (ENSSSAG00000039668)	vegfc (ENSSSAG00000098022)	spcs3 (ENSSSAG00000063898)	asb5b (ENSSSAG00000063906)	wdr17 (ENSSSAG00000063973)	ENSSSAG00000062493	GPM6A (ENSSSAG00000068042)	glra3 (ENSSSAG00000068071) #18	PGDH (ENSSSAG00000069326) #19	cep44 (ENSSSAG00000069330) #20	fbxo8 (ENSSSAG00000115162) #21	hand2 (ENSSSAG00000106585) #22	SCRG1 (ENSSSAG00000054575) #23	hmgb2a (ENSSSAG00000109524) #26	galnt7 (ENSSSAG00000054259) #27	galntl6 (ENSSSAG00000053665) #28	tmem154 (ENSSSAG00000053643)	FBXW7 (ENSSSAG00000053603)	gatb (ENSSSAG00000069474)	dctpp1 (ENSSSAG00000069569)	FHIP1A (ENSSSAG00000069572)	SH3D19 (ENSSSAG00000069578)	RPS3A (ENSSSAG00000069593)	LRBA (ENSSSAG00000069704)	ENSSSAG00000107787	mab21l2 (ENSSSAG00000110521)	ENSSSAG00000072083
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2	glra4b (ENSHHUG00000011564)	ENSHHUG00000011556	DRP2 (ENSHHUG00000011318)	ENSHHUG00000011313	ENSHHUG00000011309	msi2a (ENSHHUG00000011278)	ENSHHUG00000011263	OMG (ENSHHUG00000011259)	NF1 (ENSHHUG00000011146)	ENSHHUG00000011133	KSR1 (ENSHHUG00000011025)	cuedc1a (ENSHHUG00000010983)	VEZF1 (ENSHHUG00000010968)	ENSHHUG00000010959	ENSHHUG00000008484	hand2 (ENSHHUG00000008422) #22
Huchen	MODERN SPECIES	2260												ENSHHUG00000047180 #18	hpgd (ENSHHUG00000047171) #19	cep44 (ENSHHUG00000047168) #20	fbxo8 (ENSHHUG00000047104) #21	hand2 (ENSHHUG00000047092) #22
Northern pike	MODERN SPECIES	24	ENSELUG00000026468	ENSELUG00000012607	ENSELUG00000012637	ENSELUG00000032869	ENSELUG00000012658	ENSELUG00000012664	ENSELUG00000012226	ENSELUG00000012682	ENSELUG00000012668	ENSELUG00000012703	ENSELUG00000029634	glra3 (ENSELUG00000013036) #18	hpgd (ENSELUG00000013134) #19	cep44 (ENSELUG00000013171) #20	fbxo8 (ENSELUG00000013211) #21	hand2 (ENSELUG00000013229) #22	SCRG1 (ENSELUG00000030804) #23	hmgb2a (ENSELUG00000013293) #26	galnt7 (ENSELUG00000013351) #27	tmem154 (ENSELUG00000013437)	FBXW7 (ENSELUG00000013499)	dctpp1 (ENSELUG00000013538)	gatb (ENSELUG00000013584)	FHIP1A (ENSELUG00000013639)	sh3d19 (ENSELUG00000013755)	rps3a (ENSELUG00000013839)	LRBA (ENSELUG00000013955)	mab21l2 (ENSELUG00000013864)	ENSELUG00000014023	nr3c2 (ENSELUG00000014053)	arhgap10 (ENSELUG00000014084)
Acanthomorphata	ANCESTRAL SPECIES	202	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000013419	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000158105 #27	ENSGT00390000002918.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a
Euacanthomorphacea	ANCESTRAL SPECIES	97	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223	ENSGT00390000002918.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a
Percomorphaceae	ANCESTRAL SPECIES	75	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223
Tiger tail seahorse	MODERN SPECIES	282	ddt (ENSHCOG00000001586)	vps37c (ENSHCOG00000001594)	ENSHCOG00000001602	galnt7 (ENSHCOG00000001612) #27	kdm2aa (ENSHCOG00000001626)	spcs3 (ENSHCOG00000001636)	stx3a (ENSHCOG00000001649)	vegfc (ENSHCOG00000001658)	ENSHCOG00000001675	ENSHCOG00000001683	ENSHCOG00000001689	ENSHCOG00000001711	dctd (ENSHCOG00000001730)	ENSHCOG00000001738 #20	fbxo8 (ENSHCOG00000001746) #21	hand2 (ENSHCOG00000001752) #22	GPM6A (ENSHCOG00000001758)	ENSHCOG00000001764	GLRA3 (ENSHCOG00000001778) #18	wdr17 (ENSHCOG00000001805)	hmgb2a (ENSHCOG00000001815) #26	pmm2 (ENSHCOG00000001822)	mtmr7b (ENSHCOG00000001833)	ENSHCOG00000001844	ENSHCOG00000001854	ENSHCOG00000001869	patl1 (ENSHCOG00000001898)	ENSHCOG00000001913	RPS6KB2 (ENSHCOG00000001946)	ENSHCOG00000001961	ENSHCOG00000001963
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00990000203830	ENSGT00510000052596.b	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT00940000158942.a	ENSGT01100000264349	ENSGT01100000263491.a.b.a.a.a.b.a
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00990000203830	ENSGT00510000052596.b	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT00940000158942.a	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00940000161345	ENSGT00940000166931
Atherinomorphae	ANCESTRAL SPECIES	38	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT01100000263491.a.b.a.a.a.b.a
Oryzias	ANCESTRAL SPECIES	28						ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000166931	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00950000183012.A.b	ENSGT00390000006933	ENSGT01100000263541.a.a.a.b.a.b.a	ENSGT00940000156783.k	ENSGT00940000166336	ENSGT00940000176019	ENSGT00640000091565	ENSGT00950000182894.B
Oryzias_b	ANCESTRAL SPECIES	80						ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000166931	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00950000183012.A.b	ENSGT00940000154063.C.a.a.a.b.a.a.b.a.b.b	ENSGT00940000154063.C.a.a.a.b.a.a.b.a.b.a.a	ENSGT00940000177444	ENSGT00940000154063.C.a.a.a.b.a.a.b.a.b.a.b	ENSGT00390000006933	ENSGT01100000263541.a.a.a.b.a.b.a	ENSGT00940000156783.k
Indian medaka	MODERN SPECIES	35	lgals2b (ENSOMEG00000015678)	gtpbp1 (ENSOMEG00000015651)	ELFN2 (ENSOMEG00000015589)	ENSOMEG00000015556	ENSOMEG00000015543	ENSOMEG00000015514	ENSOMEG00000015485	rtn4rl2a (ENSOMEG00000015468)	ENSOMEG00000015455	unc93b1 (ENSOMEG00000015402)	timm10 (ENSOMEG00000015357)	ENSOMEG00000015333	ENSOMEG00000015270	cep44 (ENSOMEG00000015176) #20	fbxo8 (ENSOMEG00000015142) #21	hand2 (ENSOMEG00000015101) #22	ddt (ENSOMEG00000014985)	galnt7 (ENSOMEG00000015072) #27	ENSOMEG00000014955	spcs3 (ENSOMEG00000014898)	kdm2aa (ENSOMEG00000014839)	stx3a (ENSOMEG00000014694)	ENSOMEG00000014657	vps37c (ENSOMEG00000014639)	ENSOMEG00000014604	ENSOMEG00000014572	ENSOMEG00000014534	ENSOMEG00000014505	ENSOMEG00000014471	ENSOMEG00000014447	ENSOMEG00000014429
Javanese ricefish	MODERN SPECIES		ENSOJAG00000007305	cyth4b (ENSOJAG00000007098)	fam83fb (ENSOJAG00000007058)	ENSOJAG00000007020	DIAPH2 (ENSOJAG00000006671)	ENSOJAG00000006622	rtn4rl2a (ENSOJAG00000006599)	ENSOJAG00000006548	unc93b1 (ENSOJAG00000006131)	ENSOJAG00000006054	timm10 (ENSOJAG00000006031)	ENSOJAG00000006004	ENSOJAG00000005775	ENSOJAG00000005736 #20	fbxo8 (ENSOJAG00000005684) #21	hand2 (ENSOJAG00000005668) #22	ddt (ENSOJAG00000005656)	ENSOJAG00000005614	galnt7 (ENSOJAG00000005339) #27	spcs3 (ENSOJAG00000005288)	kdm2aa (ENSOJAG00000004090)	stx3a (ENSOJAG00000003697)	ENSOJAG00000003637	vps37c (ENSOJAG00000003618)	ENSOJAG00000010920	golga7ba (ENSOJAG00000010818)	crtac1a (ENSOJAG00000010094)	ENSOJAG00000009999	LOXL4 (ENSOJAG00000009969)	ENSOJAG00000009905	crb3b (ENSOJAG00000009880)
Oryzias_a	ANCESTRAL SPECIES	111							ENSGT01020000230338.a.a	ENSGT00940000180797	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000156045.b	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000166931	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00950000183012.A.b
Japanese Medaka HdrR	MODERN SPECIES		wdr83os (ENSORLG00000024207)	wdr83 (ENSORLG00000020088)	PSPN (ENSORLG00000020090)	gtf3aa (ENSORLG00000022686)	yju2b (ENSORLG00000020092)	c3b.2 (ENSORLG00000020102)	ENSORLG00000029164	ENSORLG00000026295	rtn4rl2a (ENSORLG00000024828)	ENSORLG00000010889	unc93b1 (ENSORLG00000010912)	timm10 (ENSORLG00000024774)	ENSORLG00000010944	ENSORLG00000010947 #20	fbxo8 (ENSORLG00000010964) #21	hand2 (ENSORLG00000026925) #22	ddt (ENSORLG00000010973)	galnt7 (ENSORLG00000011016) #27	spcs3 (ENSORLG00000011044)	ENSORLG00000011028	kdm2aa (ENSORLG00000011075)	ENSORLG00000011118	vps37c (ENSORLG00000028517)	ENSORLG00000027707	c3-1 (ENSORLG00000011267)	c3-2 (ENSORLG00000011326)	ENSORLG00000018160	ENSORLG00000023460	b3gntl1 (ENSORLG00000011348)	ENSORLG00000011354	slc25a10b (ENSORLG00000011387)
Chinese medaka	MODERN SPECIES	1247											rtn4rl2a (ENSOSIG00000010429)	ENSOSIG00000016384	unc93b1 (ENSOSIG00000016353)	timm10 (ENSOSIG00000016345)	fbxo8 (ENSOSIG00000016344) #21	hand2 (ENSOSIG00000016341) #22	ENSOSIG00000016338	galnt7 (ENSOSIG00000014471) #27	ENSOSIG00000014464	spcs3 (ENSOSIG00000014462)	kdm2aa (ENSOSIG00000013973)	stx3a (ENSOSIG00000013958)
Cyprinodontiformes	ANCESTRAL SPECIES	38	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT01100000263491.a.b.a.a.a.b.a
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00940000160772 #22
Mangrove rivulus	MODERN SPECIES	537														ENSKMAG00000016677	aldh5a1 (ENSKMAG00000016713)	hand2 (ENSKMAG00000016663) #22	ENSKMAG00000016656	vps37c (ENSKMAG00000016629)
Turquoise killifish	MODERN SPECIES	1372																hand2 (ENSNFUG00015015507) #22
Cyprinodontoidei	ANCESTRAL SPECIES	58	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a.e	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT01100000263491.a.b.a.a.a.b.a
Poecilia	ANCESTRAL SPECIES	64	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT01030000234893.b.a.a.b.b.a	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a.e	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT00990000210217
NAME_6	ANCESTRAL SPECIES	78	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT01030000234893.b.a.a.b.b.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a.e	ENSGT00940000153676.a	ENSGT00390000009873.g #20	ENSGT00390000009873.h #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT00990000210217
Amazon molly	MODERN SPECIES	414	ENSPFOG00000010874	ENSPFOG00000010867	ENSPFOG00000010818	ENSPFOG00000010787	ENSPFOG00000010740	ENSPFOG00000010729	ENSPFOG00000022568	ENSPFOG00000010705	vegfc (ENSPFOG00000010660)	TENM3 (ENSPFOG00000009694)	ENSPFOG00000021807 #20	ENSPFOG00000023938	dctd (ENSPFOG00000010583)	ENSPFOG00000009625 #20	fbxo8 (ENSPFOG00000009550) #21	hand2 (ENSPFOG00000009546) #22	ENSPFOG00000009530	ndufs8a (ENSPFOG00000009410)	glrba (ENSPFOG00000009313)	GRIA2 (ENSPFOG00000008549)
Sailfin molly	MODERN SPECIES	656													DCTD (ENSPLAG00000004700)	ENSPLAG00000004725 #20	fbxo8 (ENSPLAG00000004737) #21	hand2 (ENSPLAG00000004744) #22	ENSPLAG00000004754	ENSPLAG00000004764	ndufs8a (ENSPLAG00000000763)	glrba (ENSPLAG00000004805)	GRIA2 (ENSPLAG00000004841)	ENSPLAG00000000779	galnt7 (ENSPLAG00000004909) #27	ENSPLAG00000004945	spcs3 (ENSPLAG00000004971)	kdm2aa (ENSPLAG00000005080)	stx3a (ENSPLAG00000005336)
Guppy	MODERN SPECIES	439	tmx2b (ENSPREG00000022631)	ENSPREG00000022617	ENSPREG00000022613	ENSPREG00000022610	ENSPREG00000022603	ENSPREG00000022596	ENSPREG00000022591	ENSPREG00000022585	ENSPREG00000022575	ENSPREG00000022558	ENSPREG00000022551	vegfc (ENSPREG00000022543)	TENM3 (ENSPREG00000022337)	dctd (ENSPREG00000022221)	fbxo8 (ENSPREG00000022197) #21	hand2 (ENSPREG00000022192) #22	ENSPREG00000022169	ENSPREG00000022154	ndufs8a (ENSPREG00000022139)	glrba (ENSPREG00000022117)	GRIA2 (ENSPREG00000022050)	ENSPREG00000022021	galnt7 (ENSPREG00000022007) #27	ENSPREG00000021996	spcs3 (ENSPREG00000021991)	kdm2aa (ENSPREG00000021962)	stx3a (ENSPREG00000021940)	ENSPREG00000021934	vps37c (ENSPREG00000021926)	ENSPREG00000021924	capn9 (ENSPREG00000021911)
Platyfish	MODERN SPECIES	19	zdhhc5a (ENSXMAG00000013732)	tmx2b (ENSXMAG00000013723)	ENSXMAG00000013714	ENSXMAG00000021497	ENSXMAG00000023872	ENSXMAG00000013701	ENSXMAG00000013687	ENSXMAG00000028168	ENSXMAG00000011494	vegfc (ENSXMAG00000011488)	TENM3 (ENSXMAG00000015765)	ENSXMAG00000021802	dctd (ENSXMAG00000015859)	cep44 (ENSXMAG00000017542) #20	fbxo8 (ENSXMAG00000017544) #21	hand2 (ENSXMAG00000023432) #22	si:dkey-102c8.3 (ENSXMAG00000015872)	ENSXMAG00000015875	ndufs8a (ENSXMAG00000015877)	glrba (ENSXMAG00000015884)	GRIA2 (ENSXMAG00000015901)	saraf (ENSXMAG00000015951)	galnt7 (ENSXMAG00000015957) #27	ASB5 (ENSXMAG00000015975)	spcs3 (ENSXMAG00000015996)	kdm2aa (ENSXMAG00000015985)	stx3a (ENSXMAG00000028936)	ENSXMAG00000016005	vps37c (ENSXMAG00000016009)	ENSXMAG00000028364	capn9 (ENSXMAG00000016015)
NAME_4	ANCESTRAL SPECIES	236												ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00950000183012.A.b
Sheepshead minnow	MODERN SPECIES	335													TENM3 (ENSCVAG00000018202)	dctd (ENSCVAG00000018241)	fbxo8 (ENSCVAG00000018289) #21	hand2 (ENSCVAG00000018299) #22	ENSCVAG00000000478	ENSCVAG00000018339	ENSCVAG00000018352
Mummichog	MODERN SPECIES	512																hand2 (ENSFHEG00000004266) #22	ndufs8a (ENSFHEG00000004246)	glrba (ENSFHEG00000004085)	gria2a (ENSFHEG00000004038)	saraf (ENSFHEG00000004002)	galnt7 (ENSFHEG00000003988) #27	ENSFHEG00000003940	spcs3 (ENSFHEG00000003928)	kdm2aa (ENSFHEG00000003912)	stx3a (ENSFHEG00000003858)	ENSFHEG00000003673
Ovalentaria_B	ANCESTRAL SPECIES	54	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105 #27	ENSGT00390000013419	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b
Cichlidae	ANCESTRAL SPECIES	62														ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052596.b	ENSGT00510000052942	ENSGT00950000183012.A.b	ENSGT00940000158942.a	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00940000161345
Pseudocrenilabrinae	ANCESTRAL SPECIES	3														ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a	ENSGT00390000013419	ENSGT00940000165311.b	ENSGT00940000162755	ENSGT01100000263621	ENSGT00940000176873	ENSGT00940000154922.a	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000155710.b	ENSGT00940000155636.b.a	ENSGT00940000153463.b.b	ENSGT00530000064271
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	154														ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Haplochromini	ANCESTRAL SPECIES	156														ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Burton s mouthbrooder	MODERN SPECIES	862														dctd (ENSHBUG00000006782)	fbxo8 (ENSHBUG00000006744) #21	hand2 (ENSHBUG00000006726) #22	ENSHBUG00000006700	ENSHBUG00000006669
Haplochromini_A	ANCESTRAL SPECIES	164														ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
P. nyererei	MODERN SPECIES	502										ENSPNYG00000016919	ENSPNYG00000016907	TENM3 (ENSPNYG00000016802)	dctd (ENSPNYG00000016709)	ENSPNYG00000016653 #20	fbxo8 (ENSPNYG00000016608) #21	hand2 (ENSPNYG00000016583) #22	ENSPNYG00000016565	ENSPNYG00000016514	ENSPNYG00000016503
Haplochromini_B	ANCESTRAL SPECIES	47	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00390000014512.d	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT00940000154348.c.b.b.a.b.d.b.h.a.a.a.b.a.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000174164	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT00940000178757	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT00940000160591.a.a	ENSGT00390000011698.c.a.b	ENSGT00390000011249
Eastern happy	MODERN SPECIES	18	ENSACLG00000016799	socs7 (ENSACLG00000016817)	sp2 (ENSACLG00000016868)	ENSACLG00000016925	ENSACLG00000017009	mrpl4 (ENSACLG00000017038)	ENSACLG00000017092	ENSACLG00000017133	vegfc (ENSACLG00000017154)	ENSACLG00000017161	ENSACLG00000017165	ENSACLG00000017209	TENM3 (ENSACLG00000017323)	dctd (ENSACLG00000017470)	fbxo8 (ENSACLG00000017521) #21	hand2 (ENSACLG00000017592) #22	ENSACLG00000017600	ENSACLG00000017613	ENSACLG00000017678	ENSACLG00000017800	ENSACLG00000017809	ENSACLG00000017914	ENSACLG00000017924	tmx2b (ENSACLG00000017930)	zdhhc5a (ENSACLG00000017981)	slc43a1b (ENSACLG00000018013)	ENSACLG00000018125	pold4 (ENSACLG00000018341)	p2rx3b (ENSACLG00000018368)	ENSACLG00000018432	irf2bp2b (ENSACLG00000018448)
Zebra mbuna	MODERN SPECIES	751																hand2 (ENSMZEG00005028181) #22
Lyretail cichlid	MODERN SPECIES	434											ENSNBRG00000009348	vegfc (ENSNBRG00000009361)	ENSNBRG00000009420	TENM3 (ENSNBRG00000009457)	fbxo8 (ENSNBRG00000009579) #21	hand2 (ENSNBRG00000009601) #22
Nile tilapia	MODERN SPECIES	18	kdm2aa (ENSONIG00000018158)	spcs3 (ENSONIG00000032171)	ENSONIG00000032229	galnt7 (ENSONIG00000018162) #27	ENSONIG00000018167	ENSONIG00000037267	ENSONIG00000018169	ENSONIG00000018171	ENSONIG00000018443	ENSONIG00000037603	ENSONIG00000041399	ENSONIG00000040542	TENM3 (ENSONIG00000016025)	dctd (ENSONIG00000032541)	fbxo8 (ENSONIG00000038733) #21	hand2 (ENSONIG00000042267) #22	ENSONIG00000039977	ndufs8a (ENSONIG00000016061)	glrba (ENSONIG00000041765)	glur2a (ENSONIG00000016067)	ENSONIG00000040179	saraf (ENSONIG00000016096)	ENSONIG00000041395	ENSONIG00000016098	tpcn3 (ENSONIG00000016102)	ENSONIG00000030581	ENSONIG00000031300	ENSONIG00000027023	slc22a7a (ENSONIG00000016109)	ENSONIG00000042055	ENSONIG00000029200
Midas cichlid	MODERN SPECIES	69											ENSACIG00000004401	TENM3 (ENSACIG00000004305)	dctd (ENSACIG00000004235)	ENSACIG00000004217 #20	fbxo8 (ENSACIG00000004196) #21	hand2 (ENSACIG00000004179) #22
Pomacentridae	ANCESTRAL SPECIES	221									ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Bicolor damselfish	MODERN SPECIES	1908													dctd (ENSSPAG00000001010)	cep44 (ENSSPAG00000001036) #20	fbxo8 (ENSSPAG00000001076) #21	hand2 (ENSSPAG00000001112) #22
Pomacentridae_A	ANCESTRAL SPECIES	250										ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Amphiprion	ANCESTRAL SPECIES	93		ENSGT00940000177045.b.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105 #27	ENSGT00390000013419	ENSGT00390000010980	ENSGT01100000263495.A.a.a	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00530000067736	ENSGT00390000002789	ENSGT00940000177040	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT01090000260226	ENSGT00730000111912.A.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155246
Clown anemonefish	MODERN SPECIES	764													dctd (ENSAOCG00000012087)	cep44 (ENSAOCG00000012043) #20	fbxo8 (ENSAOCG00000012018) #21	hand2 (ENSAOCG00000011989) #22	ENSAOCG00000011954	ltv1 (ENSAOCG00000011907)	ENSAOCG00000002332	capn9 (ENSAOCG00000011801)	taf5l (ENSAOCG00000011766)	ENSAOCG00000011736
Orange clownfish	MODERN SPECIES	17	galnt7 (ENSAPEG00000004270) #27	ENSAPEG00000004391	zgc:153146 (ENSAPEG00000004404)	ENSAPEG00000004427	ENSAPEG00000004442	ENSAPEG00000004453	vegfc (ENSAPEG00000004465)	ENSAPEG00000004475	ENSAPEG00000004485	TENM3 (ENSAPEG00000004567)	dctd (ENSAPEG00000004793)	ENSAPEG00000004816 #20	fbxo8 (ENSAPEG00000004845) #21	dctd (ENSAPEG00000004901)	ENSAPEG00000004928 #20	hand2 (ENSAPEG00000004952) #22	ENSAPEG00000004997	ltv1 (ENSAPEG00000005031)	ENSAPEG00000005070	capn9 (ENSAPEG00000005095)	taf5l (ENSAPEG00000005137)	ENSAPEG00000005156	ENSAPEG00000005183	nup133 (ENSAPEG00000005220)	ACTA1 (ENSAPEG00000005287)	CCSAP (ENSAPEG00000005321)	cdc6 (ENSAPEG00000005339)	cdc6 (ENSAPEG00000005384)	WIPF2 (ENSAPEG00000005487)	MRPL21 (ENSAPEG00000005507)	zgc:77929 (ENSAPEG00000005535)
Spiny chromis	MODERN SPECIES	1802																hand2 (ENSAPOG00000002923) #22
Percomorphaceae_C	ANCESTRAL SPECIES	25	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT00390000011272	ENSGT00390000013419	ENSGT00940000158105 #27	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00990000203830	ENSGT00510000052596.b	ENSGT00510000052942	ENSGT00610000087490
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00940000161345	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466 #26	ENSGT00390000002918.a.a	ENSGT00940000155777.b
Carangaria	ANCESTRAL SPECIES		ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000163205.d	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00940000158602	ENSGT00940000154466 #26	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b
Carangaria_A	ANCESTRAL SPECIES	62	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.j	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00940000158602	ENSGT00940000154466 #26	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000155062.a	ENSGT00940000157122.b.b
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT00990000203726	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000157122.b.b	ENSGT00980000200302	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00940000158602	ENSGT00940000154466 #26	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a
Greater amberjack	MODERN SPECIES	93	tmx2b (ENSSDUG00000006174)	ENSSDUG00000006145	ADISSP (ENSSDUG00000006122)	ENSSDUG00000006084	ENSSDUG00000006043	ENSSDUG00000006003	ENSSDUG00000005987	vegfc (ENSSDUG00000005963)	ENSSDUG00000005946	ENSSDUG00000005924	ENSSDUG00000005910	TENM3 (ENSSDUG00000005581)	dctd (ENSSDUG00000005527)	cep44 (ENSSDUG00000005496) #20	fbxo8 (ENSSDUG00000005461) #21	hand2 (ENSSDUG00000005437) #22	ENSSDUG00000005378	ENSSDUG00000005355	glrba (ENSSDUG00000005332)	gria2a (ENSSDUG00000005301)	GPM6A (ENSSDUG00000005279)	ENSSDUG00000005260	glra3 (ENSSDUG00000004967) #18
Yellowtail amberjack	MODERN SPECIES	3281	ENSSLDG00000019956	TESK1 (ENSSLDG00000019934)	ADISSP (ENSSLDG00000019910)	ENSSLDG00000019870	ENSSLDG00000019793	ENSSLDG00000019775	ENSSLDG00000019761	vegfc (ENSSLDG00000019755)	ENSSLDG00000019742	ENSSLDG00000019723	ENSSLDG00000019705	ENSSLDG00000019690	dctd (ENSSLDG00000019653)	cep44 (ENSSLDG00000019636) #20	fbxo8 (ENSSLDG00000019619) #21	hand2 (ENSSLDG00000019601) #22	ENSSLDG00000019546	ENSSLDG00000019526
Barramundi perch	MODERN SPECIES	32													dctd (ENSLCAG00010021737)	ENSLCAG00010021739 #20	fbxo8 (ENSLCAG00010021744) #21	hand2 (ENSLCAG00010021747) #22	p2rx3b (ENSLCAG00010021750)	ENSLCAG00010021755	ENSLCAG00010021757	ndufs8a (ENSLCAG00010021759)	TMEM187 (ENSLCAG00010021768)	saraf (ENSLCAG00010021771)	galnt7 (ENSLCAG00010021795) #27	ENSLCAG00010021872	spcs3 (ENSLCAG00010021877)	kdm2aa (ENSLCAG00010021893)	stx3a (ENSLCAG00010021943)	ENSLCAG00010021947	ENSLCAG00010021950	ENSLCAG00010021952	ENSLCAG00010021956
Pleuronectoidei	ANCESTRAL SPECIES	76	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Tongue sole	MODERN SPECIES	19	ENSCSEG00000015475	GPM6A (ENSCSEG00000015465)	ENSCSEG00000015459	ARHGDIA (ENSCSEG00000015448)	ALYREF (ENSCSEG00000015438)	anapc11 (ENSCSEG00000015417)	ppp1r27b (ENSCSEG00000015412)	p4hb (ENSCSEG00000015403)	gria2a (ENSCSEG00000015384)	ENSCSEG00000015380	glrba (ENSCSEG00000015357)	gstt1b (ENSCSEG00000015351)	ENSCSEG00000015346	chchd10 (ENSCSEG00000015343)	fbxo8 (ENSCSEG00000015328) #21	hand2 (ENSCSEG00000015320) #22	ENSCSEG00000015256	ENSCSEG00000015240	ENSCSEG00000015235	ENDOV (ENSCSEG00000015214)	NPTX1 (ENSCSEG00000015199)	RPTOR (ENSCSEG00000015159)	ENSCSEG00000015112	ENSCSEG00000015083	rtn4rl2a (ENSCSEG00000015068)	unc93b1 (ENSCSEG00000015034)	timm10 (ENSCSEG00000015023)	CTNND1 (ENSCSEG00000015013)	ENSCSEG00000015002	ENSCSEG00000014997	ENSCSEG00000014987
Turbot	MODERN SPECIES	20	ENSSMAG00000012252	ENSSMAG00000012277	ENSSMAG00000034788	ENSSMAG00000012484	ENSSMAG00000012492	wdr17 (ENSSMAG00000012503)	ENSSMAG00000034692 #19	ENSSMAG00000012602 #18	ENSSMAG00000032933	ENSSMAG00000012638	ENSSMAG00000037754	ENSSMAG00000012739	ENSSMAG00000013371	ENSSMAG00000013386 #20	ENSSMAG00000013399 #21	hand2 (ENSSMAG00000022866) #22	ENSSMAG00000013443	ENSSMAG00000013547	ENSSMAG00000014858	ENSSMAG00000032062	ENSSMAG00000013607	ENSSMAG00000013663	ENSSMAG00000024065	ENSSMAG00000013910	ENSSMAG00000013922	ENSSMAG00000013941 #27	ENSSMAG00000014849	ENSSMAG00000014947	ENSSMAG00000014951	ENSSMAG00000014963	ENSSMAG00000014981
Anabantaria	ANCESTRAL SPECIES	48	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Zig-zag eel	MODERN SPECIES		ENSMAMG00000002998	slc43a1b (ENSMAMG00000003012)	ENSMAMG00000003057	pold4 (ENSMAMG00000003177)	ENSMAMG00000003194	ENSMAMG00000003204	ENSMAMG00000003226	ENSMAMG00000003247	ENSMAMG00000003269	ENSMAMG00000003298	ENSMAMG00000003330	ENSMAMG00000003364	ENSMAMG00000003495	cep44 (ENSMAMG00000003510) #20	ENSMAMG00000026096 #21	hand2 (ENSMAMG00000003557) #22	ENSMAMG00000028518	ENSMAMG00000003580	ENSMAMG00000026834	ENSMAMG00000027721	glra3 (ENSMAMG00000003626) #18	hpgd (ENSMAMG00000026813) #19	wdr17 (ENSMAMG00000003713)	ENSMAMG00000003816 #26	ENSMAMG00000003832	ENSMAMG00000003860	ENSMAMG00000003905	ENSMAMG00000003950	ENSMAMG00000004038	ENSMAMG00000004063	ENSMAMG00000004097
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22
Siamese fighting fish	MODERN SPECIES		timm10 (ENSBSLG00000018685)	CTNND1 (ENSBSLG00000018364)	slc43a3a (ENSBSLG00000018314)	slc43a3a (ENSBSLG00000018273)	NOCT (ENSBSLG00000018185)	elf2b (ENSBSLG00000018120)	ENSBSLG00000018100	naa15b (ENSBSLG00000016893)	ENSBSLG00000016589	scoca (ENSBSLG00000016277)	clgn (ENSBSLG00000016013)	ENSBSLG00000016004	ENSBSLG00000015995	ENSBSLG00000015947	fbxo8 (ENSBSLG00000015936) #21	hand2 (ENSBSLG00000015931) #22	ENSBSLG00000015925	tppp2 (ENSBSLG00000015921)	ENSBSLG00000015919	exosc9 (ENSBSLG00000015906)	tusc3 (ENSBSLG00000015889)	SGCZ (ENSBSLG00000015880)	abca1a (ENSBSLG00000015778)	ENSBSLG00000015757	stra6l (ENSBSLG00000015747)	tdrd7a (ENSBSLG00000015678)	TMOD1 (ENSBSLG00000015602)	cplx2l (ENSBSLG00000015595)	gne (ENSBSLG00000015084)	clta (ENSBSLG00000015061)	ENSBSLG00000015058
Climbing perch	MODERN SPECIES		pold4 (ENSATEG00000026596)	ENSATEG00000003700	slc43a1b (ENSATEG00000003687)	ENSATEG00000003675	ENSATEG00000003616	ENSATEG00000003607	ENSATEG00000003583	ENSATEG00000003550	ENSATEG00000026424	ENSATEG00000003514	ENSATEG00000003508	ENSATEG00000003278	ENSATEG00000025497	cep44 (ENSATEG00000003246) #20	ENSATEG00000003189 #21	hand2 (ENSATEG00000003171) #22	ENSATEG00000003140	ENSATEG00000003079	ENSATEG00000002976 #27	ENSATEG00000002966	ENSATEG00000029485	ENSATEG00000002928	ENSATEG00000002880	ENSATEG00000002868	ENSATEG00000029716	ENSATEG00000002857	ENSATEG00000002853	ENSATEG00000002726	ENSATEG00000028234	chchd10 (ENSATEG00000002690)	ENSATEG00000002686
Eupercaria	ANCESTRAL SPECIES	39	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000160772 #22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000005624	ENSTNIG00000005623	ENSTNIG00000005622	ENSTNIG00000005618	ENSTNIG00000005617	inppl1a (ENSTNIG00000005603)	phox2a (ENSTNIG00000005602)	ENSTNIG00000005601	ENSTNIG00000005600	ENSTNIG00000005599	ENSTNIG00000005596	cplx2 (ENSTNIG00000005587)	ENSTNIG00000005586	ENSTNIG00000000003	ENSTNIG00000005585	hand2 (ENSTNIG00000005584) #22	utp23 (ENSTNIG00000005582)	ENSTNIG00000005570	klhl32 (ENSTNIG00000005569)	ENSTNIG00000000574	ENSTNIG00000005553	ttll12 (ENSTNIG00000005552)	TMTC1 (ENSTNIG00000005551)	dpydb (ENSTNIG00000005550)	ENSTNIG00000005549	ENSTNIG00000005548	prrx1b (ENSTNIG00000005538)	gorab (ENSTNIG00000005537)	ntmt2 (ENSTNIG00000005536)	niban1a (ENSTNIG00000005535)	TRMT1L (ENSTNIG00000005534)
Eupecaria_A	ANCESTRAL SPECIES	36	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b
Ballan wrasse	MODERN SPECIES	105	ENSLBEG00000020051	ENSLBEG00000020068	ENSLBEG00000020126	ENSLBEG00000020145	ENSLBEG00000020212	ENSLBEG00000020305	ENSLBEG00000020312	ENSLBEG00000020320	ENSLBEG00000020344	ENSLBEG00000020383	ENSLBEG00000020414	vegfc (ENSLBEG00000020429)	TENM3 (ENSLBEG00000020476)	cep44 (ENSLBEG00000020625) #20	fbxo8 (ENSLBEG00000020645) #21	hand2 (ENSLBEG00000020681) #22	ENSLBEG00000020712	ENSLBEG00000020747	ENSLBEG00000020758
Eupecaria_B	ANCESTRAL SPECIES	34	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a.n
Perciformes	ANCESTRAL SPECIES	45	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105 #27	ENSGT00390000013419	ENSGT00390000011272	ENSGT00390000003049.b.a
Perciformes_a	ANCESTRAL SPECIES	52	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105 #27	ENSGT00390000013419	ENSGT00390000011272	ENSGT00390000003049.b.a
Pike perch	MODERN SPECIES	128												TENM3 (ENSSLUG00000004050)	dctd (ENSSLUG00000003622)	cep44 (ENSSLUG00000003601) #20	fbxo8 (ENSSLUG00000003581) #21	hand2 (ENSSLUG00000003576) #22	stx3a (ENSSLUG00000002960)	ENSSLUG00000024091	kdm2aa (ENSSLUG00000024022)	spcs3 (ENSSLUG00000023996)	ENSSLUG00000023991	galnt7 (ENSSLUG00000023824) #27	saraf (ENSSLUG00000023786)	TMEM187 (ENSSLUG00000023784)	ndufs8a (ENSSLUG00000023780)
Channel bull blenny	MODERN SPECIES		tmx2b (ENSCGOG00000007447)	ENSCGOG00000007556	ADISSP (ENSCGOG00000007559)	ENSCGOG00000007560	ENSCGOG00000007561	ENSCGOG00000007562	ENSCGOG00000007570	vegfc (ENSCGOG00000007575)	ENSCGOG00000007576	ENSCGOG00000007578	ENSCGOG00000007580	TENM3 (ENSCGOG00000007717)	dctd (ENSCGOG00000013980)	cep44 (ENSCGOG00000013986) #20	fbxo8 (ENSCGOG00000013990) #21	hand2 (ENSCGOG00000013992) #22	stx3a (ENSCGOG00000013994)	kdm2aa (ENSCGOG00000013996)	spcs3 (ENSCGOG00000014087)	ENSCGOG00000014092	ENSCGOG00000014094	galnt7 (ENSCGOG00000014102) #27	saraf (ENSCGOG00000014509)	TMEM187 (ENSCGOG00000014510)	ndufs8a (ENSCGOG00000014513)	patl1 (ENSCGOG00000014516)	ENSCGOG00000014528	ENSCGOG00000014531	ENSCGOG00000014534	mtmr7b (ENSCGOG00000014565)	pmm2 (ENSCGOG00000015051)
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105 #27	ENSGT00390000013419	ENSGT00390000003049.b.a	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466 #26	ENSGT00940000158602	ENSGT00940000154593.a.b #19
Lumpfish	MODERN SPECIES							ENSCLMG00005000009	ENSCLMG00005000015	ENSCLMG00005000018	vegfc (ENSCLMG00005000028)	ENSCLMG00005000037	ENSCLMG00005000038	TENM3 (ENSCLMG00005000572)	dctd (ENSCLMG00005018167)	ENSCLMG00005018168 #20	fbxo8 (ENSCLMG00005018169) #21	hand2 (ENSCLMG00005018173) #22	ENSCLMG00005018192	ENSCLMG00005018227	ENSCLMG00005018229	spcs3 (ENSCLMG00005018231)	ENSCLMG00005018232	galnt7 (ENSCLMG00005018234) #27	saraf (ENSCLMG00005018254)	ndufs8a (ENSCLMG00005018255)	patl1 (ENSCLMG00005018267)	ENSCLMG00005018268	ENSCLMG00005018269	pmm2 (ENSCLMG00005018271)	hmgb2a (ENSCLMG00005018273) #26	wdr17 (ENSCLMG00005018275)	ENSCLMG00005018277
Stickleback	MODERN SPECIES	4	slc43a1b (ENSGACG00000016335)	ENSGACG00000016342	p2rx3b (ENSGACG00000016347)	zdhhc5a (ENSGACG00000016361)	tmx2b (ENSGACG00000016364)	TESK1 (ENSGACG00000016374)	ENSGACG00000016375	ENSGACG00000016377	ENSGACG00000016379	ENSGACG00000016382	ENSGACG00000016383	vegfc (ENSGACG00000016386)	TENM3 (ENSGACG00000016390)	dctd (ENSGACG00000016400)	fbxo8 (ENSGACG00000016412) #21	hand2 (ENSGACG00000016418) #22	stx3a (ENSGACG00000016420)	kdm2aa (ENSGACG00000016421)	spcs3 (ENSGACG00000016427)	ENSGACG00000016432	galnt7 (ENSGACG00000016436) #27	saraf (ENSGACG00000016440)	ndufs8a (ENSGACG00000016442)	patl1 (ENSGACG00000016448)	ENSGACG00000016455	ENSGACG00000016459	mtmr7b (ENSGACG00000016465)	pmm2 (ENSGACG00000016475)	hmgb2a (ENSGACG00000016482) #26	wdr17 (ENSGACG00000016493)	hpgd (ENSGACG00000016499) #19
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a.n
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a.n
European seabass	MODERN SPECIES	20	ENSDLAG00005026455	ENSDLAG00005011372	ENSDLAG00005011312	ENSDLAG00005011297	ENSDLAG00005011282	ENSDLAG00005011278	ENSDLAG00005011264	ENSDLAG00005011216	ENSDLAG00005028809	ENSDLAG00005011196	ENSDLAG00005034844	ENSDLAG00005030132	ENSDLAG00005010255	cep44 (ENSDLAG00005008903) #20	ENSDLAG00005030601 #21	hand2 (ENSDLAG00005008932) #22	ENSDLAG00005008934	ENSDLAG00005008941	ENSDLAG00005009068	ENSDLAG00005026375	ENSDLAG00005010249	ENSDLAG00005028393	ENSDLAG00005003170	ENSDLAG00005032186	ENSDLAG00005030918	ENSDLAG00005028125	ENSDLAG00005033112	ENSDLAG00005021922	ENSDLAG00005021916	ENSDLAG00005026627	ENSDLAG00005033084
Large yellow croaker	MODERN SPECIES	481	tmx2b (ENSLCRG00005020868)	TESK1 (ENSLCRG00005020864)	ENSLCRG00005020863	ENSLCRG00005020862	ENSLCRG00005020861	ENSLCRG00005020860	vegfc (ENSLCRG00005020858)	ENSLCRG00005020857	ENSLCRG00005020856	ENSLCRG00005020854	TENM3 (ENSLCRG00005017609)	dctd (ENSLCRG00005017545)	ENSLCRG00005017543	cep44 (ENSLCRG00005017541) #20	fbxo8 (ENSLCRG00005017537) #21	hand2 (ENSLCRG00005017535) #22	ENSLCRG00005017532	PLPPR5 (ENSLCRG00005017528)	tyw3 (ENSLCRG00005017527)	ENSLCRG00005017525	ENSLCRG00005017523	ttpa (ENSLCRG00005017518)	xpr1b (ENSLCRG00005017340)	ENSLCRG00005017332	dnai4 (ENSLCRG00005017327)	ENSLCRG00005017312	ENSLCRG00005017308	ACOT11 (ENSLCRG00005017196)	mrpl37 (ENSLCRG00005017194)	csnk1g2a (ENSLCRG00005016436)	mfsd12a (ENSLCRG00005016365)
Gilthead seabream	MODERN SPECIES		ENSSAUG00010007659	hmgb2a (ENSSAUG00010007660) #26	pmm2 (ENSSAUG00010007661)	ENSSAUG00010007662	mtmr7b (ENSSAUG00010007665)	ENSSAUG00010007809	ENSSAUG00010007822	patl1 (ENSSAUG00010007823)	ENSSAUG00010007826	cep44 (ENSSAUG00010007829) #20	fbxo8 (ENSSAUG00010007831) #21	ENSSAUG00010007832	ENSSAUG00010007833	ENSSAUG00010007834	ENSSAUG00010007835	hand2 (ENSSAUG00010007836) #22	ENSSAUG00010007837	GLRB (ENSSAUG00010007840)	ENSSAUG00010008490	ENSSAUG00010008491	ENSSAUG00010008492	ENSSAUG00010008493	tmem176 (ENSSAUG00010008500)	vps37c (ENSSAUG00010008501)	ENSSAUG00010008503	ENSSAUG00010008507	ENSSAUG00010008509	ENSSAUG00010008511	ENSSAUG00010008512	ENSSAUG00010008513	chchd10 (ENSSAUG00010008514)
Pinecone sodierfish	MODERN SPECIES					ENSMMDG00005000927	GPM6A (ENSMMDG00005000924)	ENSMMDG00005000922	glrba (ENSMMDG00005000921)	ENSMMDG00005000919	ENSMMDG00005000918	GRIA2 (ENSMMDG00005000901)	pmm2 (ENSMMDG00005000890)	glra3 (ENSMMDG00005000886) #18	hpgd (ENSMMDG00005000883) #19	ENSMMDG00005000882 #20	fbxo8 (ENSMMDG00005000879) #21	hand2 (ENSMMDG00005000878) #22	hmgb2a (ENSMMDG00005000877) #26	wdr17 (ENSMMDG00005000651)	dctd (ENSMMDG00005000595)	TENM3 (ENSMMDG00005000508)	vegfc (ENSMMDG00005000467)	ENSMMDG00005000465	ENSMMDG00005000462	ENSMMDG00005000457	ENSMMDG00005000455	ENSMMDG00005000450	ENSMMDG00005000428	ENSMMDG00005000407	ENSMMDG00005000389	ENSMMDG00005000374	ENSMMDG00005000357
Cod	MODERN SPECIES	16	ENSGMOG00000022571	ENSGMOG00000029049	ENSGMOG00000004795	ENSGMOG00000004894	ENSGMOG00000004905	ENSGMOG00000004927	ENSGMOG00000024328	ENSGMOG00000026931	ENSGMOG00000007088	ENSGMOG00000016486	glra3 (ENSGMOG00000005468) #18	hpgd (ENSGMOG00000001937) #19	cep44 (ENSGMOG00000001932) #20	ENSGMOG00000030231	fbxo8 (ENSGMOG00000001920) #21	hand2 (ENSGMOG00000033700) #22	ENSGMOG00000018985 #26	ENSGMOG00000019006 #27	ENSGMOG00000019021	ENSGMOG00000019104	ENSGMOG00000006820	ENSGMOG00000031371	ENSGMOG00000006752	ENSGMOG00000006737 #31	ENSGMOG00000006725	ENSGMOG00000006707	ENSGMOG00000009655	ENSGMOG00000033539	ENSGMOG00000025268	ENSGMOG00000025853	ENSGMOG00000034682
Otomorpha	ANCESTRAL SPECIES	57	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.f	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000154372.a.b.a	ENSGT00940000154372.a.a.b	ENSGT00530000063586.b.c.a	ENSGT00390000010628.a	ENSGT00390000005639.a.a.n	ENSGT00390000000470.m	ENSGT00390000015958.c	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00510000046787.e.a	ENSGT00990000208074	ENSGT00940000156074.a.b	ENSGT00940000153745.b.f	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000002566	fgfbp2b (ENSCHAG00000002529)	prom1b (ENSCHAG00000025619)	tapt1b (ENSCHAG00000025603)	ldb2b (ENSCHAG00000025587)	qdprb.4 (ENSCHAG00000025580)	ccdc149b (ENSCHAG00000025567)	ING2 (ENSCHAG00000025560)	STOX2 (ENSCHAG00000025558)	wdr17 (ENSCHAG00000024838)	GPM6A (ENSCHAG00000024720)	glra3 (ENSCHAG00000024546) #18	hpgd (ENSCHAG00000024535) #19	cep44 (ENSCHAG00000024534) #20	fbxo8 (ENSCHAG00000024519) #21	hand2 (ENSCHAG00000024514) #22	SCRG1 (ENSCHAG00000024508) #23	hmgb2a (ENSCHAG00000024498) #26	galnt7 (ENSCHAG00000024324) #27	galntl6 (ENSCHAG00000024248) #28	FAM193A (ENSCHAG00000024073)	TNIP2 (ENSCHAG00000024057)	sparcl1 (ENSCHAG00000024042)	scpp9 (ENSCHAG00000024033)	cnga1a (ENSCHAG00000024031)	tacr3a (ENSCHAG00000024017)	bdh2 (ENSCHAG00000023994)	ENSCHAG00000023975	cisd2 (ENSCHAG00000023972)	golt1bb (ENSCHAG00000023969)	suclg1 (ENSCHAG00000023961)
Denticle herring	MODERN SPECIES	14	ENSDCDG00000010819	fgfbp2b (ENSDCDG00000010816)	prom1b (ENSDCDG00000009012)	tapt1b (ENSDCDG00000006115)	ldb2b (ENSDCDG00000005617)	qdprb.4 (ENSDCDG00000005606)	ccdc149b (ENSDCDG00000005589)	ING2 (ENSDCDG00000005583)	STOX2 (ENSDCDG00000005579)	wdr17 (ENSDCDG00000005508)	GPM6A (ENSDCDG00000005496)	glra3 (ENSDCDG00000005262) #18	hpgd (ENSDCDG00000005237) #19	cep44 (ENSDCDG00000005235) #20	fbxo8 (ENSDCDG00000005234) #21	hand2 (ENSDCDG00000005232) #22	hmgb2a (ENSDCDG00000005230) #26	galnt7 (ENSDCDG00000004931) #27	galntl6 (ENSDCDG00000004905) #28	FAM193A (ENSDCDG00000004875)	ENSDCDG00000004850	sparcl1 (ENSDCDG00000004794)	scpp9 (ENSDCDG00000004780)	cnga1a (ENSDCDG00000034690)	tacr3a (ENSDCDG00000034688)	bdh2 (ENSDCDG00000034682)	ENSDCDG00000034669	cisd2 (ENSDCDG00000034666)	suclg1 (ENSDCDG00000034662)	LRRTM1 (ENSDCDG00000034656)	ctnna2 (ENSDCDG00000034495)
Otophysi	ANCESTRAL SPECIES	79	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00510000046787.e.a	ENSGT00740000117197	ENSGT00510000046908.a.b	ENSGT00390000000973.a.b	ENSGT00940000154895.b	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00510000046787.e.a	ENSGT00740000117197	ENSGT00510000046908.a.b	ENSGT00390000000973.a.b	ENSGT00940000154895.b	ENSGT00940000159333	ENSGT00940000159559.e	ENSGT00940000158472	ENSGT00940000160339	ENSGT00940000154978	ENSGT00940000156063.k
Channel catfish	MODERN SPECIES	22	asb5 (ENSIPUG00000002631)	wdr17 (ENSIPUG00000002658)	ENSIPUG00000002687	ENSIPUG00000002694	ENSIPUG00000002705	ENSIPUG00000002708	ENSIPUG00000002719	ENSIPUG00000002724	ENSIPUG00000002735	ENSIPUG00000002740	gpm6a (ENSIPUG00000002750)	glra3 (ENSIPUG00000002794) #18	HPGD (ENSIPUG00000003061) #19	cep44 (ENSIPUG00000003087) #20	fbxo8 (ENSIPUG00000003106) #21	hand2 (ENSIPUG00000003128) #22	SCRG1 (ENSIPUG00000003136) #23	hmgb2a (ENSIPUG00000003150) #26	galnt7 (ENSIPUG00000003165) #27	galntl6 (ENSIPUG00000003196) #28	ENSIPUG00000003248	ENSIPUG00000003266	ENSIPUG00000003334	ENSIPUG00000003337	ENSIPUG00000003343	sparcl1 (ENSIPUG00000003381)	scpp1 (ENSIPUG00000003891)	Tnip2 (ENSIPUG00000003895)	FAM193A (ENSIPUG00000003934)	DCLK2 (ENSIPUG00000003977)	nr3c2 (ENSIPUG00000004309)
Characiphysae_b	ANCESTRAL SPECIES	76		ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00510000046787.e.a	ENSGT00740000117197	ENSGT00510000046908.a.b	ENSGT00390000000973.a.b	ENSGT00940000154895.b	ENSGT00940000159333	ENSGT00940000159559.e	ENSGT00940000158472	ENSGT00940000160339	ENSGT00940000154978	ENSGT00940000156063.k
Characoidei	ANCESTRAL SPECIES	83												ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00390000009191 #23	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00510000046787.e.a	ENSGT00740000117197	ENSGT00510000046908.a.b	ENSGT00390000000973.a.b	ENSGT00940000154895.b	ENSGT00940000159333	ENSGT00940000159559.e	ENSGT00940000158472	ENSGT00940000160339	ENSGT00940000154978	ENSGT00940000156063.k
Mexicana tetra	MODERN SPECIES	17												glra3 (ENSAMXG00000033487) #18	hpgd (ENSAMXG00000036072) #19	cep44 (ENSAMXG00000044081) #20	fbxo8 (ENSAMXG00000010799) #21	hand2 (ENSAMXG00000039141) #22	SCRG1 (ENSAMXG00000035267) #23	hmgb2a (ENSAMXG00000039458) #26	galnt7 (ENSAMXG00000017060) #27	galntl6 (ENSAMXG00000017087) #28	ENSAMXG00000029902	ENSAMXG00000034308	ENSAMXG00000030849	sparcl1 (ENSAMXG00000017100)	scpp1 (ENSAMXG00000035298)	ENSAMXG00000017148	FAM193A (ENSAMXG00000019508)	dclk2a (ENSAMXG00000031323)	nr3c2 (ENSAMXG00000025608)	arhgap10 (ENSAMXG00000040905)	prmt9 (ENSAMXG00000019547)
Red-bellied piranha	MODERN SPECIES	75										gpm6ab (ENSPNAG00000018013)	ENSPNAG00000018027	glra3 (ENSPNAG00000018082) #18	hpgd (ENSPNAG00000018096) #19	cep44 (ENSPNAG00000018114) #20	fbxo8 (ENSPNAG00000018147) #21	hand2 (ENSPNAG00000018155) #22	SCRG1 (ENSPNAG00000018171) #23	hmgb2a (ENSPNAG00000018206) #26	galnt7 (ENSPNAG00000003518) #27	galntl6 (ENSPNAG00000018292) #28	sparcl1 (ENSPNAG00000018312)	scpp1 (ENSPNAG00000018327)	ENSPNAG00000018343	FAM193A (ENSPNAG00000018360)	dclk2a (ENSPNAG00000018538)	nr3c2 (ENSPNAG00000018585)	arhgap10 (ENSPNAG00000018633)	prmt9 (ENSPNAG00000018653)	tmem184c (ENSPNAG00000018682)	ednraa (ENSPNAG00000018703)	pou4f2 (ENSPNAG00000018723)
Electric eel	MODERN SPECIES	378								spcs3 (ENSEEEG00000017355)	asb5b (ENSEEEG00000017358)	wdr17 (ENSEEEG00000017360)	GPM6A (ENSEEEG00000017361)	glra3 (ENSEEEG00000017394) #18	hpgd (ENSEEEG00000017405) #19	cep44 (ENSEEEG00000017409) #20	fbxo8 (ENSEEEG00000017410) #21	hand2 (ENSEEEG00000017411) #22	SCRG1 (ENSEEEG00000017412) #23	hmgb2a (ENSEEEG00000017413) #26	galnt7 (ENSEEEG00000017423) #27	ENSEEEG00000017603	MXD4 (ENSEEEG00000017604)	ENSEEEG00000017606	pdcd4a (ENSEEEG00000017612)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772 #22	ENSGT00940000154466.cc #26	ENSGT00940000158105 #27	ENSGT00940000155038 #28	ENSGT00510000046787.e.a	ENSGT00740000117197	ENSGT00510000046908.a.b	ENSGT00390000000973.a.b	ENSGT00940000154895.b.d	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339	ENSGT00940000154978
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	348							ENSGT00940000156167.b.b	ENSGT00390000009223.sb	ENSGT00940000165059.A.b	ENSGT00940000158602.j	ENSGT00390000006915.d.i.b	ENSGT00940000158368.d #18	ENSGT00940000154593.a.b.i #19	ENSGT00390000009873.k #20	ENSGT00940000158356.k #21	ENSGT00940000160772.g #22	ENSGT00940000154466.cc.b #26	ENSGT00940000158105.k #27	ENSGT00940000155038.pc #28	ENSGT00510000046787.e.a.a	ENSGT00740000117197.b	ENSGT00510000046908.a.b.d	ENSGT00390000000973.a.b.b	ENSGT00940000154895.b.d.b	ENSGT00940000159333.n	ENSGT00940000159559.d	ENSGT00940000158472.d	ENSGT00940000155201.c.a	ENSGT01100000263512.a.a.b.b.a	ENSGT00940000160339.b	ENSGT00940000154978.eb
Cyprininae_a	ANCESTRAL SPECIES	217							ENSGT00940000156167.b.b	ENSGT00390000009223.sb	ENSGT00940000165059.A.b	ENSGT00940000158602.j	ENSGT00390000006915.d.i.b	ENSGT00940000158368.d #18	ENSGT00940000154593.a.b.i #19	ENSGT00390000009873.k #20	ENSGT00940000158356.k #21	ENSGT00940000160772.g #22	ENSGT00940000154466.cc.b #26	ENSGT00940000158105.k #27	ENSGT00940000155038.pc #28	ENSGT00510000046787.e.a.a	ENSGT00740000117197.b	ENSGT00510000046908.a.b.d	ENSGT00390000000973.a.b.b	ENSGT00940000154895.b.d.b	ENSGT00940000159333.n	ENSGT00940000159559.d	ENSGT00940000158472.d	ENSGT00940000155201.c.a	ENSGT01100000263512.a.a.b.b.a	ENSGT00940000160339.b	ENSGT00940000154978.eb
Common carp reference	MODERN SPECIES	22	aip (ENSCCRG00000048177)	ENSCCRG00000051978	tmem134 (ENSCCRG00000045301)	ENSCCRG00000064446	dctd (ENSCCRG00000045283)	ENSCCRG00000045275	vegfc (ENSCCRG00000000931)	spcs3 (ENSCCRG00000031218)	asb5b (ENSCCRG00000061922)	wdr17 (ENSCCRG00000031233)	gpm6ab (ENSCCRG00000074115)	ENSCCRG00000079948	glra3 (ENSCCRG00000050387) #18	fbxo8 (ENSCCRG00000069917) #21	cep44 (ENSCCRG00000001108) #20	hand2 (ENSCCRG00000002702) #22	hmgb2a (ENSCCRG00000060705) #26	galnt7 (ENSCCRG00000040431) #27	galntl6 (ENSCCRG00000041366) #28	sparcl1 (ENSCCRG00000016120)	scpp1 (ENSCCRG00000076200)	ENSCCRG00000058577	ENSCCRG00000036286	dclk2a (ENSCCRG00000023870)	nr3c2 (ENSCCRG00000016208)	arhgap10 (ENSCCRG00000075379)	tmem184c (ENSCCRG00000025121)	ednraa (ENSCCRG00000064871)	pou4f2 (ENSCCRG00000067954)	lsm6 (ENSCCRG00000079318)	ZNF827 (ENSCCRG00000035574)
Golden-line barbel	MODERN SPECIES	657					vegfc (ENSSGRG00000023986)	spcs3 (ENSSGRG00000023979)	asb5b (ENSSGRG00000023977)	wdr17 (ENSSGRG00000023923)	gpm6ab (ENSSGRG00000023920)	gpm6ab (ENSSGRG00000023915)	ENSSGRG00000023913	glra3 (ENSSGRG00000023912) #18	hpgd (ENSSGRG00000023911) #19	cep44 (ENSSGRG00000023909) #20	fbxo8 (ENSSGRG00000023905) #21	hand2 (ENSSGRG00000023904) #22	hmgb2a (ENSSGRG00000023901) #26	galnt7 (ENSSGRG00000023896) #27
Goldfish	MODERN SPECIES		ARVCF (ENSCARG00000000095)	ENSCARG00000000094	fbxo8 (ENSCARG00000000093) #21	cep44 (ENSCARG00000000092) #20	hpgd (ENSCARG00000000091) #19	glra3 (ENSCARG00000000090) #18	gpm6ab (ENSCARG00000000089)	ENSCARG00000000088	asb5b (ENSCARG00000000086)	spcs3 (ENSCARG00000000085)	vegfc (ENSCARG00000000084)	ENSCARG00000000083	ENSCARG00000000081	ENSCARG00000000080	tenm3 (ENSCARG00000000079)	hand2 (ENSCARG00000000078) #22	hmgb2a (ENSCARG00000000077) #26	galnt7 (ENSCARG00000000076) #27	galntl6 (ENSCARG00000000075) #28	sparcl1 (ENSCARG00000000074)	scpp1 (ENSCARG00000000073)	ENSCARG00000000072	FAM193A (ENSCARG00000000071)	dclk2a (ENSCARG00000000070)	nr3c2 (ENSCARG00000000069)	arhgap10 (ENSCARG00000000068)	tmem184c (ENSCARG00000000067)	ednraa (ENSCARG00000000066)	pou4f2 (ENSCARG00000000065)	ENSCARG00000000064	ENSCARG00000000063
Cyprininae	ANCESTRAL SPECIES	164	ENSGT00390000011766.g	ENSGT00940000159063.f.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a.m	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b.a	ENSGT00390000009223.rb	ENSGT00940000165059.A.a	ENSGT00940000158602.i	ENSGT00390000006915.d.i.a	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368.c #18	ENSGT00940000154593.a.b.j #19	ENSGT00390000009873.l #20	ENSGT00940000158356.l #21	ENSGT00940000160772.h #22	ENSGT00940000154466.cc.a #26	ENSGT00940000158105.l #27	ENSGT00940000155038.qc #28	ENSGT00510000046787.e.a.b	ENSGT00740000117197.a	ENSGT00510000046908.a.b.c	ENSGT00390000000973.a.b.a	ENSGT00940000154895.b.d.a	ENSGT00940000159333.m	ENSGT00940000159559.c	ENSGT00940000158472.c	ENSGT00940000155201.c.b	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000160339.a	ENSGT00940000154978.db
Goldfish	MODERN SPECIES	277	tmem134 (ENSCARG00000045521)	dctd (ENSCARG00000045635)	ENSCARG00000046010	vegfc (ENSCARG00000048535)	ENSCARG00000048565	spcs3 (ENSCARG00000048575)	ENSCARG00000048603	asb5b (ENSCARG00000018865)	wdr17 (ENSCARG00000018888)	gpm6ab (ENSCARG00000018978)	glra3 (ENSCARG00000019237) #18	ENSCARG00000019464	hpgd (ENSCARG00000019468) #19	cep44 (ENSCARG00000019483) #20	fbxo8 (ENSCARG00000019500) #21	hand2 (ENSCARG00000019511) #22	hmgb2a (ENSCARG00000019517) #26	galnt7 (ENSCARG00000019556) #27	galntl6 (ENSCARG00000020263) #28	ENSCARG00000020381	ENSCARG00000020385	sparcl1 (ENSCARG00000020392)	scpp1 (ENSCARG00000020402)	ENSCARG00000020407	FAM193A (ENSCARG00000020414)	dclk2a (ENSCARG00000020534)	nr3c2 (ENSCARG00000022937)	arhgap10 (ENSCARG00000022973)	prmt9 (ENSCARG00000023782)	tmem184c (ENSCARG00000023828)	ednraa (ENSCARG00000024182)
Cyprininae_a	ANCESTRAL SPECIES	157	ENSGT00390000011766.g	ENSGT00940000159063.f.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a.m	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b.a	ENSGT00390000009223.rb	ENSGT00940000165059.A.a	ENSGT00940000158602.i	ENSGT00390000006915.d.i.a	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368.c #18	ENSGT00940000154593.a.b.j #19	ENSGT00390000009873.l #20	ENSGT00940000158356.l #21	ENSGT00940000160772.h #22	ENSGT00940000154466.cc.a #26	ENSGT00940000158105.l #27	ENSGT00940000155038.qc #28	ENSGT00510000046787.e.a.b	ENSGT00740000117197.a	ENSGT00510000046908.a.b.c	ENSGT00390000000973.a.b.a	ENSGT00940000154895.b.d.a	ENSGT00940000159333.m	ENSGT00940000159559.c	ENSGT00940000158472.c	ENSGT00940000155201.c.b	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000160339.a	ENSGT00940000154978.db
Common carp reference	MODERN SPECIES	27	tmem134 (ENSCCRG00000081609)	irf2a (ENSCCRG00000076801)	ENSCCRG00000045193	ENSCCRG00000041144	tenm3 (ENSCCRG00000059959)	vegfc (ENSCCRG00000075544)	spcs3 (ENSCCRG00000032030)	asb5b (ENSCCRG00000058956)	wdr17 (ENSCCRG00000031139)	gpm6ab (ENSCCRG00000024308)	ENSCCRG00000058509	glra3 (ENSCCRG00000049689) #18	hpgd (ENSCCRG00000061983) #19	fbxo8 (ENSCCRG00000065697) #21	cep44 (ENSCCRG00000002666) #20	hand2 (ENSCCRG00000040398) #22	hmgb2a (ENSCCRG00000079039) #26	galnt7 (ENSCCRG00000002736) #27	galntl6 (ENSCCRG00000070371) #28	ENSCCRG00000079193	sparcl1 (ENSCCRG00000036272)	ENSCCRG00000016128	ENSCCRG00000074633	ENSCCRG00000036265	dclk2a (ENSCCRG00000016187)	nr3c2 (ENSCCRG00000003237)	arhgap10 (ENSCCRG00000069265)	prmt9 (ENSCCRG00000028542)	tmem184c (ENSCCRG00000013098)	ednraa (ENSCCRG00000056916)	pou4f2 (ENSCCRG00000056758)
Golden-line barbel	MODERN SPECIES	16	ing2 (ENSSGRG00000036225)	STOX2 (ENSSGRG00000036224)	tmem134 (ENSSGRG00000036223)	irf2a (ENSSGRG00000036222)	dctd (ENSSGRG00000036221)	TENM3 (ENSSGRG00000033560)	ENSSGRG00000033531	vegfc (ENSSGRG00000033530)	spcs3 (ENSSGRG00000033525)	asb5b (ENSSGRG00000033524)	wdr17 (ENSSGRG00000032964)	gpm6ab (ENSSGRG00000032955)	glra3 (ENSSGRG00000032951) #18	hpgd (ENSSGRG00000032943) #19	cep44 (ENSSGRG00000032942) #20	hand2 (ENSSGRG00000032940) #22	hmgb2a (ENSSGRG00000032939) #26	galnt7 (ENSSGRG00000032938) #27	galntl6 (ENSSGRG00000032937) #28	sparcl1 (ENSSGRG00000032936)	scpp1 (ENSSGRG00000032934)	ENSSGRG00000032933	FAM193A (ENSSGRG00000032892)	dclk2a (ENSSGRG00000032773)	nr3c2 (ENSSGRG00000032646)	arhgap10 (ENSSGRG00000032639)	prmt9 (ENSSGRG00000032638)	tmem184c (ENSSGRG00000032496)	ednraa (ENSSGRG00000032364)	pou4f2 (ENSSGRG00000032362)	lsm6 (ENSSGRG00000032360)
Zebrafish	MODERN SPECIES		STOX2 (ENSDARG00000070162)	tmem134 (ENSDARG00000024828)	irf2a (ENSDARG00000007387)	dctd (ENSDARG00000036990)	tenm3 (ENSDARG00000005479)	ENSDARG00000104657	vegfc (ENSDARG00000069640)	spcs3 (ENSDARG00000089976)	asb5b (ENSDARG00000053222)	wdr17 (ENSDARG00000075098)	gpm6ab (ENSDARG00000004621)	glra3 (ENSDARG00000011066) #18	hpgd (ENSDARG00000012016) #19	cep44 (ENSDARG00000053106) #20	fbxo8 (ENSDARG00000007477) #21	hand2 (ENSDARG00000008305) #22	hmgb2a (ENSDARG00000029722) #26	ENSDARG00000113575	galnt7 (ENSDARG00000057303) #27	galntl6 (ENSDARG00000040048) #28	ENSDARG00000077519	ENSDARG00000076343	sparcl1 (ENSDARG00000074989)	scpp1 (ENSDARG00000090416)	ENSDARG00000074501	fam193a (ENSDARG00000102787)	dclk2a (ENSDARG00000034093)	nr3c2 (ENSDARG00000102082)	arhgap10 (ENSDARG00000078326)	prmt9 (ENSDARG00000036755)	tmem184c (ENSDARG00000078789)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	220					ENSGT00410000025556.a.a.a.b	ENSGT01030000234566.e.b.a.a.d.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368.i #18	ENSGT00940000154593.a.b #19	ENSGT00390000009873 #20	ENSGT00940000158356 #21	ENSGT00940000160772.i #22	ENSGT00390000009191 #23	ENSGT00940000154466 #26	ENSGT00940000158105.i #27	ENSGT00940000155038.tc #28	ENSGT00390000000973.a.b.i	ENSGT00510000046908.a.b	ENSGT00940000181360	ENSGT00510000046787.e.a	ENSGT01000000220882	ENSGT00940000156074.a.b	ENSGT00940000153745.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351
Asian bonytongue	MODERN SPECIES	7	IRF2 (ENSSFOG00015032334)	STOX2 (ENSSFOG00015020536)	ENSSFOG00015020518	trappc11 (ENSSFOG00015020365)	WWC2 (ENSSFOG00015020303)	TENM3 (ENSSFOG00015020254)	vegfc (ENSSFOG00015020236)	spcs3 (ENSSFOG00015020226)	asb5b (ENSSFOG00015027571)	wdr17 (ENSSFOG00015020006)	GPM6A (ENSSFOG00015019961)	glra3 (ENSSFOG00015019945) #18	hpgd (ENSSFOG00015019878) #19	cep44 (ENSSFOG00015019847) #20	fbxo8 (ENSSFOG00015025727) #21	hand2 (ENSSFOG00015019807) #22	SCRG1 (ENSSFOG00015029537) #23	hmgb2a (ENSSFOG00015019784) #26	galnt7 (ENSSFOG00015019762) #27	galntl6 (ENSSFOG00015019733) #28	FAM193A (ENSSFOG00015019654)	TNIP2 (ENSSFOG00015019632)	ENSSFOG00015024835	sparcl1 (ENSSFOG00015019600)	ENSSFOG00015019590	cnga1a (ENSSFOG00015019582)	tacr3a (ENSSFOG00015025707)	bdh2 (ENSSFOG00015019240)	ENSSFOG00015019213	ENSSFOG00015030099	cisd2 (ENSSFOG00015019208)
P. kingsleyae	MODERN SPECIES	6									asb5b (ENSPKIG00000009671)	wdr17 (ENSPKIG00000009737)	GPM6A (ENSPKIG00000009850)	glra3 (ENSPKIG00000009922) #18	hpgd (ENSPKIG00000010035) #19	cep44 (ENSPKIG00000010095) #20	fbxo8 (ENSPKIG00000010171) #21	hand2 (ENSPKIG00000010209) #22	SCRG1 (ENSPKIG00000010226) #23	hmgb2a (ENSPKIG00000010260) #26	galnt7 (ENSPKIG00000010314) #27	galntl6 (ENSPKIG00000010410) #28	FAM193A (ENSPKIG00000010534)	ENSPKIG00000010651	ENSPKIG00000010675	sparcl1 (ENSPKIG00000010703)	ENSPKIG00000010743	ENSPKIG00000010758	cnga1a (ENSPKIG00000010788)	ENSPKIG00000010824	bdh2 (ENSPKIG00000010846)	cisd2 (ENSPKIG00000010875)	suclg1 (ENSPKIG00000010907)
Osteoglossiformes	ANCESTRAL SPECIES	231	ENSGT00950000182856.a.a.b.a	ENSGT00390000015511	ENSGT00940000159063.g.b	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.d.a	ENSGT00950000183045.C	ENSGT00940000153230.A ##9	ENSGT00940000165522.a	ENSGT00910000144159.B	ENSGT00390000006915.d.j.b	ENSGT00940000158368.j #18	ENSGT00940000160772.j #22	ENSGT00940000158105.j #27	ENSGT00940000155038.uc #28	ENSGT00390000000973.a.b.j
P. kingsleyae	MODERN SPECIES	142	irf2 (ENSPKIG00000007333)	enpp6 (ENSPKIG00000007305)	enpp6 (ENSPKIG00000007282)	STOX2 (ENSPKIG00000007258)	rwdd (ENSPKIG00000007232)	ING2 (ENSPKIG00000007217)	dctd (ENSPKIG00000007202)	ENSPKIG00000007190	TENM3 (ENSPKIG00000006791)	aga (ENSPKIG00000006658)	neil3 (ENSPKIG00000006630) ##9	ENSPKIG00000006621	asb5a (ENSPKIG00000006588)	spata4 (ENSPKIG00000006546)	gpm6aa (ENSPKIG00000006511)	HAND2 (ENSPKIG00000006490) #22	GALNT7 (ENSPKIG00000006430) #27	GALNTL6 (ENSPKIG00000006370) #28	ENSPKIG00000006345	mtus1a (ENSPKIG00000006318)	pdgfrl (ENSPKIG00000006299)	slc7a2 (ENSPKIG00000006243)	cnot7 (ENSPKIG00000006165)	zdhhc2 (ENSPKIG00000006088)	fgf20b (ENSPKIG00000006061)	SGCZ (ENSPKIG00000006035)	DLC1 (ENSPKIG00000005988)	LONRF1 (ENSPKIG00000005938)	ENSPKIG00000005910	cdk2ap2 (ENSPKIG00000005894)	ENSPKIG00000005844
Asian bonytongue	MODERN SPECIES	18	zgc:153146 (ENSSFOG00015016159)	snx25 (ENSSFOG00015016180)	ENSSFOG00015016228	irf2 (ENSSFOG00015016268)	enpp6 (ENSSFOG00015016299)	rwdd (ENSSFOG00015016340)	STOX2 (ENSSFOG00015016321)	dctd (ENSSFOG00015016372)	TENM3 (ENSSFOG00015016398)	aga (ENSSFOG00015026832)	neil3 (ENSSFOG00015016495) ##9	asb5a (ENSSFOG00015016519)	spata4 (ENSSFOG00015025074)	gpm6aa (ENSSFOG00015016573)	ENSSFOG00015016602 #18	HAND2 (ENSSFOG00015025637) #22	GALNT7 (ENSSFOG00015016651) #27	GALNTL6 (ENSSFOG00015016704) #28	FAM193A (ENSSFOG00015016741)	ENSSFOG00015033033	CNGA1 (ENSSFOG00015016819)	NFXL1 (ENSSFOG00015016860)	CORIN (ENSSFOG00015016934)	TACR3 (ENSSFOG00015016970)	ENSSFOG00015016983	ENSSFOG00015017006	LRRTM1 (ENSSFOG00015033327)	ctnna2 (ENSSFOG00015017032)	ENSSFOG00015017102	rnf24 (ENSSFOG00015033113)	FBXO41 (ENSSFOG00015017167)
Spotted gar	MODERN SPECIES	670	WWC2 (ENSLOCG00000013682)	dctd (ENSLOCG00000013678)	TENM3 (ENSLOCG00000013649)	aga (ENSLOCG00000013645)	neil3 (ENSLOCG00000013638) ##9	vegfc (ENSLOCG00000013634)	spcs3 (ENSLOCG00000013631)	ASB5 (ENSLOCG00000013627)	spata4 (ENSLOCG00000013625)	wdr17 (ENSLOCG00000013618)	gpm6aa (ENSLOCG00000013615)	glra3 (ENSLOCG00000013603) #18	hpgd (ENSLOCG00000013597) #19	cep44 (ENSLOCG00000013590) #20	fbxo8 (ENSLOCG00000013587) #21	hand2 (ENSLOCG00000013581) #22	hmgb2a (ENSLOCG00000013578) #26	galnt7 (ENSLOCG00000013565) #27	galntl6 (ENSLOCG00000013556) #28	FAM193A (ENSLOCG00000013548)	ENSLOCG00000013545	ENSLOCG00000013541	ENSLOCG00000013538	ENSLOCG00000013532	sparcl1 (ENSLOCG00000013522)	ENSLOCG00000013517	ENSLOCG00000013511	ENSLOCG00000013509	ENSLOCG00000013504	ENSLOCG00000013500	uso1 (ENSLOCG00000013485)
Reedfish	MODERN SPECIES	27						vegfc (ENSECRG00000017065)	spcs3 (ENSECRG00000017031)	ASB5 (ENSECRG00000016987)	spata4 (ENSECRG00000016967)	wdr17 (ENSECRG00000016860)	gpm6aa (ENSECRG00000016736)	glra3 (ENSECRG00000016525) #18	hpgd (ENSECRG00000016454) #19	cep44 (ENSECRG00000016427) #20	fbxo8 (ENSECRG00000016398) #21	hand2 (ENSECRG00000016377) #22	SCRG1 (ENSECRG00000016365) #23	hmgb2a (ENSECRG00000016345) #26	galnt7 (ENSECRG00000015660) #27	ENSECRG00000015568	galntl6 (ENSECRG00000015478) #28	FAM193A (ENSECRG00000015411)	ENSECRG00000015372	ENSECRG00000015231	ENSECRG00000015106	ENSECRG00000015045