Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Glires	ANCESTRAL SPECIES		ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Rodentia	ANCESTRAL SPECIES		ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00900000143227	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Muroidea	ANCESTRAL SPECIES	3	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00900000143227	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00900000143227	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Murinae	ANCESTRAL SPECIES	2	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Mus	ANCESTRAL SPECIES	3	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Mus_A	ANCESTRAL SPECIES	3	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Mus_B	ANCESTRAL SPECIES	5	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Mouse	MODERN SPECIES	13	Scp2 (ENSMUSG00000028603) #7	Echdc2 (ENSMUSG00000028601) #8	Zyg11a (ENSMUSG00000034645) #9	Zyg11b (ENSMUSG00000034636) #10	Coa7 (ENSMUSG00000048351) #11	Shisal2a (ENSMUSG00000059816) #12	Gpx7 (ENSMUSG00000028597) #13	Tut4 (ENSMUSG00000034610) #14	Prpf38a (ENSMUSG00000063800) #15	Orc1 (ENSMUSG00000028587) #16	Cc2d1b (ENSMUSG00000028582) #17	Zfyve9 (ENSMUSG00000034557) #18	Btf3l4 (ENSMUSG00000028568) #19	Txndc12 (ENSMUSG00000028567) #20	Kti12 (ENSMUSG00000073775) #21	Rab3b (ENSMUSG00000003411) #22	Nrd1 (ENSMUSG00000053510) #23	Osbpl9 (ENSMUSG00000028559) #24	Calr4 (ENSMUSG00000028558) #25	Eps15 (ENSMUSG00000028552) #26	Ttc39a (ENSMUSG00000028555) #27	Rnf11 (ENSMUSG00000028557) #28	4930522H14Rik (ENSMUSG00000060491) #29	Cdkn2c (ENSMUSG00000028551) #30	Faf1 (ENSMUSG00000010517) #31	Dmrta2 (ENSMUSG00000047143) #32	Elavl4 (ENSMUSG00000028546) #33	Agbl4 (ENSMUSG00000061298) #34	Bend5 (ENSMUSG00000028545) #35	Spata6 (ENSMUSG00000034401) #36	Slc5a9 (ENSMUSG00000028544) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00390000002443 #21	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
spretus	MODERN SPECIES	13	Zyg11a (MGP_SPRETEiJ_G0027232) #9	Zyg11b (MGP_SPRETEiJ_G0027233) #10	Coa7 (MGP_SPRETEiJ_G0027234) #11	Shisal2a (MGP_SPRETEiJ_G0027235) #12	Gpx7 (MGP_SPRETEiJ_G0027236) #13	Tut4 (MGP_SPRETEiJ_G0027237) #14	Prpf38a (MGP_SPRETEiJ_G0027238) #15	Orc1 (MGP_SPRETEiJ_G0027239) #16	Cc2d1b (MGP_SPRETEiJ_G0027240) #17	Zfyve9 (MGP_SPRETEiJ_G0027241) #18	MGP_SPRETEiJ_G0027242	MGP_SPRETEiJ_G0027243 #19	Txndc12 (MGP_SPRETEiJ_G0027244) #20	MGP_SPRETEiJ_G0027245	Kti12 (MGP_SPRETEiJ_G0027246) #21	Rab3b (MGP_SPRETEiJ_G0027247) #22	Nrd1 (MGP_SPRETEiJ_G0027248) #23	Osbpl9 (MGP_SPRETEiJ_G0027249) #24	Calr4 (MGP_SPRETEiJ_G0027250) #25	Eps15 (MGP_SPRETEiJ_G0027251) #26	Ttc39a (MGP_SPRETEiJ_G0027252) #27	Rnf11 (MGP_SPRETEiJ_G0027253) #28	4930522H14Rik (MGP_SPRETEiJ_G0027254) #29	Cdkn2c (MGP_SPRETEiJ_G0027255) #30	Faf1 (MGP_SPRETEiJ_G0027256) #31	Dmrta2 (MGP_SPRETEiJ_G0027257) #32	Elavl4 (MGP_SPRETEiJ_G0027258) #33	Agbl4 (MGP_SPRETEiJ_G0027259) #34	Bend5 (MGP_SPRETEiJ_G0027260) #35	Spata6 (MGP_SPRETEiJ_G0027261) #36	Slc5a9 (MGP_SPRETEiJ_G0027262) #37
Steppe mouse	MODERN SPECIES	3208	Zyg11a (ENSMSIG00000008898) #9	Zyg11b (ENSMSIG00000009007) #10	Coa7 (ENSMSIG00000009074) #11	Shisal2a (ENSMSIG00000009080) #12	ENSMSIG00000009101	Gpx7 (ENSMSIG00000009105) #13	Tut4 (ENSMSIG00000009120) #14	Prpf38a (ENSMSIG00000009346) #15	Orc1 (ENSMSIG00000009368) #16	Cc2d1b (ENSMSIG00000009416) #17	Zfyve9 (ENSMSIG00000009471) #18	ENSMSIG00000009649	ENSMSIG00000009654 #19	Txndc12 (ENSMSIG00000009686) #20	ENSMSIG00000009709	Rab3b (ENSMSIG00000009714) #22	ENSMSIG00000009731	Nrd1 (ENSMSIG00000009746) #23	Osbpl9 (ENSMSIG00000010057) #24	Calr4 (ENSMSIG00000010220) #25	Eps15 (ENSMSIG00000010254) #26	Ttc39a (ENSMSIG00000010745) #27	Rnf11 (ENSMSIG00000010854) #28	4930522H14Rik (ENSMSIG00000010887) #29	ENSMSIG00000010900	Cdkn2c (ENSMSIG00000010907) #30	Faf1 (ENSMSIG00000010918) #31	Dmrta2 (ENSMSIG00000010966) #32	ENSMSIG00000010976	Elavl4 (ENSMSIG00000010996) #33
Ryukyu mouse	MODERN SPECIES	13	Zyg11a (MGP_CAROLIEiJ_G0026263) #9	Zyg11b (MGP_CAROLIEiJ_G0026264) #10	Coa7 (MGP_CAROLIEiJ_G0026265) #11	Shisal2a (MGP_CAROLIEiJ_G0026266) #12	Gpx7 (MGP_CAROLIEiJ_G0026267) #13	Tut4 (MGP_CAROLIEiJ_G0026268) #14	Prpf38a (MGP_CAROLIEiJ_G0026269) #15	Orc1 (MGP_CAROLIEiJ_G0026270) #16	Cc2d1b (MGP_CAROLIEiJ_G0026271) #17	Zfyve9 (MGP_CAROLIEiJ_G0026272) #18	MGP_CAROLIEiJ_G0026273	MGP_CAROLIEiJ_G0026274 #19	Txndc12 (MGP_CAROLIEiJ_G0026275) #20	MGP_CAROLIEiJ_G0026276	Kti12 (MGP_CAROLIEiJ_G0026277) #21	Rab3b (MGP_CAROLIEiJ_G0026278) #22	Nrd1 (MGP_CAROLIEiJ_G0026279) #23	Osbpl9 (MGP_CAROLIEiJ_G0026280) #24	MGP_CAROLIEiJ_G0026281 #25	Eps15 (MGP_CAROLIEiJ_G0026282) #26	Ttc39a (MGP_CAROLIEiJ_G0026283) #27	Rnf11 (MGP_CAROLIEiJ_G0026284) #28	4930522H14Rik (MGP_CAROLIEiJ_G0026285) #29	Cdkn2c (MGP_CAROLIEiJ_G0026286) #30	Faf1 (MGP_CAROLIEiJ_G0026287) #31	Dmrta2 (MGP_CAROLIEiJ_G0026288) #32	Elavl4 (MGP_CAROLIEiJ_G0026289) #33	Agbl4 (MGP_CAROLIEiJ_G0026290) #34	Bend5 (MGP_CAROLIEiJ_G0026291) #35	Spata6 (MGP_CAROLIEiJ_G0026292) #36	Slc5a9 (MGP_CAROLIEiJ_G0026293) #37
Shrew mouse	MODERN SPECIES	19	Zyg11a (MGP_PahariEiJ_G0028596) #9	Zyg11b (MGP_PahariEiJ_G0028597) #10	Coa7 (MGP_PahariEiJ_G0028598) #11	Shisal2a (MGP_PahariEiJ_G0028599) #12	Gpx7 (MGP_PahariEiJ_G0028600) #13	Tut4 (MGP_PahariEiJ_G0028601) #14	Prpf38a (MGP_PahariEiJ_G0028602) #15	Orc1 (MGP_PahariEiJ_G0028603) #16	Cc2d1b (MGP_PahariEiJ_G0028604) #17	Zfyve9 (MGP_PahariEiJ_G0028605) #18	MGP_PahariEiJ_G0028606	MGP_PahariEiJ_G0028607 #19	Txndc12 (MGP_PahariEiJ_G0028608) #20	MGP_PahariEiJ_G0028609	Kti12 (MGP_PahariEiJ_G0028610) #21	Rab3b (MGP_PahariEiJ_G0028611) #22	Nrd1 (MGP_PahariEiJ_G0028612) #23	Osbpl9 (MGP_PahariEiJ_G0028613) #24	Calr4 (MGP_PahariEiJ_G0028614) #25	Eps15 (MGP_PahariEiJ_G0028615) #26	Ttc39a (MGP_PahariEiJ_G0028616) #27	Rnf11 (MGP_PahariEiJ_G0028617) #28	4930522H14Rik (MGP_PahariEiJ_G0028618) #29	Cdkn2c (MGP_PahariEiJ_G0028619) #30	Faf1 (MGP_PahariEiJ_G0028620) #31	Dmrta2 (MGP_PahariEiJ_G0028621) #32	Elavl4 (MGP_PahariEiJ_G0028622) #33	Agbl4 (MGP_PahariEiJ_G0028623) #34	Bend5 (MGP_PahariEiJ_G0028624) #35	Spata6 (MGP_PahariEiJ_G0028625) #36	Slc5a9 (MGP_PahariEiJ_G0028626) #37
Rat	MODERN SPECIES	15	Echdc2 (ENSRNOG00000029333) #8	Zyg11a (ENSRNOG00000010885) #9	Zyg11b (ENSRNOG00000010859) #10	Coa7 (ENSRNOG00000010636) #11	Shisal2a (ENSRNOG00000030641) #12	Gpx7 (ENSRNOG00000009751) #13	Tut4 (ENSRNOG00000052062) #14	Prpf38a (ENSRNOG00000009451) #15	Orc1 (ENSRNOG00000008841) #16	Cc2d1b (ENSRNOG00000008634) #17	Zfyve9 (ENSRNOG00000027183) #18	AABR07049554.2 (ENSRNOG00000049469)	Btf3l4 (ENSRNOG00000008512) #19	Txndc12 (ENSRNOG00000008090) #20	Kti12 (ENSRNOG00000070073) #21	Rab3b (ENSRNOG00000008001) #22	Nrdc (ENSRNOG00000007111) #23	Osbpl9 (ENSRNOG00000033593) #24	Calr4 (ENSRNOG00000037710) #25	Eps15 (ENSRNOG00000010299) #26	Ttc39a (ENSRNOG00000047573) #27	Rnf11 (ENSRNOG00000057589) #28	LOC689589 (ENSRNOG00000009138) #29	Cdkn2c (ENSRNOG00000008956) #30	Faf1 (ENSRNOG00000008523) #31	Dmrta2 (ENSRNOG00000068045) #32	Elavl4 (ENSRNOG00000023601) #33	Bend5 (ENSRNOG00000008025) #35	Spata6 (ENSRNOG00000007568) #36	Slc5a9 (ENSRNOG00000042950) #37	Skint8 (ENSRNOG00000037680)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00900000143227	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00900000143227	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00900000142372	ENSGT00530000063273.a #20	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00390000001724 #35	ENSGT00940000155042.b #34	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Golden Hamster	MODERN SPECIES	648	ENSMAUG00000020482 #7	ENSMAUG00000013333 #8	Zyg11b (ENSMAUG00000018692) #10	Coa7 (ENSMAUG00000012044) #11	Shisal2a (ENSMAUG00000020030) #12	Gpx7 (ENSMAUG00000016553) #13	Tut4 (ENSMAUG00000010283) #14	ENSMAUG00000006707	Orc1 (ENSMAUG00000013045) #16	Cc2d1b (ENSMAUG00000008894) #17	Zfyve9 (ENSMAUG00000001289) #18	ENSMAUG00000008216	ENSMAUG00000010455 #19	ENSMAUG00000007753	Txndc12 (ENSMAUG00000008444) #20	Rab3b (ENSMAUG00000012473) #22	ENSMAUG00000010138	Nrd1 (ENSMAUG00000012215) #23	Osbpl9 (ENSMAUG00000011321) #24	Calr4 (ENSMAUG00000016786) #25	Eps15 (ENSMAUG00000021661) #26	Ttc39a (ENSMAUG00000013412) #27	Rnf11 (ENSMAUG00000014680) #28	4930522H14Rik (ENSMAUG00000018143) #29	Cdkn2c (ENSMAUG00000019466) #30	Faf1 (ENSMAUG00000011844) #31	Dmrta2 (ENSMAUG00000012169) #32	Elavl4 (ENSMAUG00000021566) #33	Bend5 (ENSMAUG00000007838) #35	Agbl4 (ENSMAUG00000020446) #34	ENSMAUG00000021230 #36
Chinese hamster chok1gshd	MODERN SPECIES	111	Echdc2 (ENSCGRG00001001923) #8	Zyg11a (ENSCGRG00001023446) #9	Zyg11b (ENSCGRG00001016208) #10	Coa7 (ENSCGRG00001023745) #11	Shisal2a (ENSCGRG00001022860) #12	Gpx7 (ENSCGRG00001021907) #13	ENSCGRG00001020028	ENSCGRG00001020315 #14	ENSCGRG00001018502 #15	Orc1 (ENSCGRG00001007386) #16	Cc2d1b (ENSCGRG00001013141) #17	Zfyve9 (ENSCGRG00001023802) #18	ENSCGRG00001021792	ENSCGRG00001021460 #19	Txndc12 (ENSCGRG00001019312) #20	Rab3b (ENSCGRG00001013853) #22	Nrd1 (ENSCGRG00001022296) #23	Osbpl9 (ENSCGRG00001021068) #24	Calr4 (ENSCGRG00001011514) #25	Eps15 (ENSCGRG00001009890) #26	Ttc39a (ENSCGRG00001020495) #27	Rnf11 (ENSCGRG00001018595) #28	4930522H14Rik (ENSCGRG00001016306) #29	Cdkn2c (ENSCGRG00001013915) #30	Faf1 (ENSCGRG00001012451) #31	Dmrta2 (ENSCGRG00001010624) #32	Elavl4 (ENSCGRG00001020348) #33	Bend5 (ENSCGRG00001018629) #35	Agbl4 (ENSCGRG00001017075) #34	Spata6 (ENSCGRG00001001168) #36	Slc5a9 (ENSCGRG00001019511) #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00900000143227	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00960000191437	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Prairie vole	MODERN SPECIES	1	ENSMOCG00000009574	Zyg11b (ENSMOCG00000022204) #10	Coa7 (ENSMOCG00000007692) #11	Shisal2a (ENSMOCG00000009421) #12	Gpx7 (ENSMOCG00000009483) #13	Tut4 (ENSMOCG00000012851) #14	ENSMOCG00000002902	Prpf38a (ENSMOCG00000013080) #15	Orc1 (ENSMOCG00000004495) #16	Cc2d1b (ENSMOCG00000010270) #17	ENSMOCG00000005933 #18	ENSMOCG00000020621	ENSMOCG00000012648 #19	Txndc12 (ENSMOCG00000007402) #20	ENSMOCG00000008572	Rab3b (ENSMOCG00000013133) #22	Nrd1 (ENSMOCG00000008359) #23	Osbpl9 (ENSMOCG00000017056) #24	ENSMOCG00000017309	Calr4 (ENSMOCG00000002656) #25	Eps15 (ENSMOCG00000004099) #26	Ttc39a (ENSMOCG00000009418) #27	Rnf11 (ENSMOCG00000014218) #28	4930522H14Rik (ENSMOCG00000014783) #29	Cdkn2c (ENSMOCG00000008425) #30	Faf1 (ENSMOCG00000016469) #31	Dmrta2 (ENSMOCG00000018451) #32	Elavl4 (ENSMOCG00000010309) #33	Agbl4 (ENSMOCG00000016733) #34	Bend5 (ENSMOCG00000003340) #35	ENSMOCG00000021709 #36
Northern American deer mouse	MODERN SPECIES	11	Podn (ENSPEMG00000018365)	Scp2 (ENSPEMG00000021015) #7	Echdc2 (ENSPEMG00000014546) #8	Zyg11a (ENSPEMG00000008436) #9	Zyg11b (ENSPEMG00000016012) #10	Coa7 (ENSPEMG00000004172) #11	Shisal2a (ENSPEMG00000011001) #12	ENSPEMG00000020533	Tut4 (ENSPEMG00000023722) #14	ENSPEMG00000023277 #15	Orc1 (ENSPEMG00000023287) #16	Cc2d1b (ENSPEMG00000013623) #17	Zfyve9 (ENSPEMG00000020667) #18	Txndc12 (ENSPEMG00000027936) #20	ENSPEMG00000029069	Rab3b (ENSPEMG00000009732) #22	Nrd1 (ENSPEMG00000021266) #23	Osbpl9 (ENSPEMG00000023026) #24	Calr4 (ENSPEMG00000015759) #25	Eps15 (ENSPEMG00000017501) #26	ENSPEMG00000029734	Ttc39a (ENSPEMG00000021737) #27	Rnf11 (ENSPEMG00000028550) #28	4930522H14Rik (ENSPEMG00000020496) #29	ENSPEMG00000030255	Cdkn2c (ENSPEMG00000029349) #30	Faf1 (ENSPEMG00000022043) #31	Dmrta2 (ENSPEMG00000028558) #32	Elavl4 (ENSPEMG00000021058) #33	Agbl4 (ENSPEMG00000023297) #34	Bend5 (ENSPEMG00000022292) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	609	Scp2 (ENSNGAG00000013622) #7	Echdc2 (ENSNGAG00000017020) #8	Zyg11a (ENSNGAG00000019638) #9	Zyg11b (ENSNGAG00000023722) #10	Coa7 (ENSNGAG00000004912) #11	ENSNGAG00000007159 #12	Gpx7 (ENSNGAG00000009438) #13	Tut4 (ENSNGAG00000011508) #14	ENSNGAG00000010806	Prpf38a (ENSNGAG00000011884) #15	Orc1 (ENSNGAG00000015424) #16	Cc2d1b (ENSNGAG00000018247) #17	ENSNGAG00000010775 #18	ENSNGAG00000015099 #19	Txndc12 (ENSNGAG00000015535) #20	Rab3b (ENSNGAG00000018705) #22	Nrd1 (ENSNGAG00000020583) #23	Osbpl9 (ENSNGAG00000010145) #24	Calr4 (ENSNGAG00000016961) #25	Eps15 (ENSNGAG00000002710) #26	Ttc39a (ENSNGAG00000017981) #27	Rnf11 (ENSNGAG00000004117) #28
Kangaroo rat	MODERN SPECIES	380	Podn (ENSDORG00000009899)	Scp2 (ENSDORG00000007773) #7	Echdc2 (ENSDORG00000016652) #8	Zyg11a (ENSDORG00000016160) #9	Zyg11b (ENSDORG00000029472) #10	Coa7 (ENSDORG00000030077) #11	Shisal2a (ENSDORG00000005418) #12	Gpx7 (ENSDORG00000013130) #13	Tut4 (ENSDORG00000027891) #14	ENSDORG00000023857 #15	Orc1 (ENSDORG00000005947) #16	Cc2d1b (ENSDORG00000005946) #17	Zfyve9 (ENSDORG00000005942) #18	ENSDORG00000025881 #19	Txndc12 (ENSDORG00000030070) #20	Rab3b (ENSDORG00000012758) #22	Nrd1 (ENSDORG00000003129) #23	Osbpl9 (ENSDORG00000003127) #24	Calr4 (ENSDORG00000023159) #25	Eps15 (ENSDORG00000015061) #26	Ttc39a (ENSDORG00000000219) #27	Rnf11 (ENSDORG00000027640) #28	Cdkn2c (ENSDORG00000024257) #30
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.mb.b #24	ENSGT00940000154690.nb #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000154327.b.e.a #7	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.mb.b #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988.f #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Marmotini	ANCESTRAL SPECIES		ENSGT00940000154327.b.e.a #7	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.mb.b #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988.f #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000154327.b.e.a #7	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.mb.b #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751.m #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988.f #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36	ENSGT00940000157546 #37
Squirrel	MODERN SPECIES	122	ZYG11A (ENSSTOG00000021997) #9	ZYG11B (ENSSTOG00000008067) #10	COA7 (ENSSTOG00000008063) #11	SHISAL2A (ENSSTOG00000026416) #12	ENSSTOG00000023745	GPX7 (ENSSTOG00000023247) #13	TUT4 (ENSSTOG00000015611) #14	PRPF38A (ENSSTOG00000015610) #15	ORC1 (ENSSTOG00000015591) #16	CC2D1B (ENSSTOG00000015584) #17	ZFYVE9 (ENSSTOG00000026884) #18	ENSSTOG00000025134	BTF3L4 (ENSSTOG00000006129) #19	TXNDC12 (ENSSTOG00000006093) #20	ENSSTOG00000032439	RAB3B (ENSSTOG00000016470) #22	NRDC (ENSSTOG00000000706) #23	ENSSTOG00000000692 #24	ENSSTOG00000022882 #25	ENSSTOG00000023598 #26	TTC39A (ENSSTOG00000009015) #27	ENSSTOG00000020072 #28	C1orf185 (ENSSTOG00000028403) #29	CDKN2C (ENSSTOG00000013796) #30	FAF1 (ENSSTOG00000002849) #31	DMRTA2 (ENSSTOG00000024624) #32	ELAVL4 (ENSSTOG00000027271) #33
Arctic ground squirrel	MODERN SPECIES	21	ECHDC2 (ENSUPAG00010021676) #8	ZYG11A (ENSUPAG00010021681) #9	ZYG11B (ENSUPAG00010021696) #10	COA7 (ENSUPAG00010021697) #11	SHISAL2A (ENSUPAG00010021700) #12	ENSUPAG00010021701	GPX7 (ENSUPAG00010021704) #13	TUT4 (ENSUPAG00010021705) #14	PRPF38A (ENSUPAG00010021729) #15	ORC1 (ENSUPAG00010021734) #16	CC2D1B (ENSUPAG00010021747) #17	ZFYVE9 (ENSUPAG00010021759) #18	ENSUPAG00010021795	BTF3L4 (ENSUPAG00010021796) #19	TXNDC12 (ENSUPAG00010021798) #20	RAB3B (ENSUPAG00010021800) #22	NRDC (ENSUPAG00010021802) #23	ENSUPAG00010021819 #24	ENSUPAG00010022352 #25	EPS15 (ENSUPAG00010022360) #26	TTC39A (ENSUPAG00010022367) #27	RNF11 (ENSUPAG00010022375) #28	C1orf185 (ENSUPAG00010022379) #29	CDKN2C (ENSUPAG00010022383) #30	FAF1 (ENSUPAG00010022385) #31	DMRTA2 (ENSUPAG00010022391) #32	ELAVL4 (ENSUPAG00010022399) #33	AGBL4 (ENSUPAG00010022463) #34	ENSUPAG00010022464	ENSUPAG00010022466	BEND5 (ENSUPAG00010022467) #35
Alpin marmot	MODERN SPECIES	15	SCP2 (ENSMMMG00000016086) #7	ECHDC2 (ENSMMMG00000016104) #8	ZYG11A (ENSMMMG00000016112) #9	ZYG11B (ENSMMMG00000016136) #10	COA7 (ENSMMMG00000016177) #11	SHISAL2A (ENSMMMG00000016185) #12	GPX7 (ENSMMMG00000016186) #13	TUT4 (ENSMMMG00000016195) #14	PRPF38A (ENSMMMG00000016248) #15	ORC1 (ENSMMMG00000016258) #16	CC2D1B (ENSMMMG00000016420) #17	ZFYVE9 (ENSMMMG00000016442) #18	ENSMMMG00000016535	BTF3L4 (ENSMMMG00000016539) #19	TXNDC12 (ENSMMMG00000016554) #20	RAB3B (ENSMMMG00000016565) #22	NRDC (ENSMMMG00000016570) #23	ENSMMMG00000016694 #24	ENSMMMG00000017393	ENSMMMG00000017404 #25	EPS15 (ENSMMMG00000017432) #26	TTC39A (ENSMMMG00000017526) #27	RNF11 (ENSMMMG00000017539) #28	C1orf185 (ENSMMMG00000017543) #29	ENSMMMG00000017564	CDKN2C (ENSMMMG00000017571) #30	FAF1 (ENSMMMG00000017599) #31	ENSMMMG00000017613	ELAVL4 (ENSMMMG00000017637) #33	AGBL4 (ENSMMMG00000017802) #34	BEND5 (ENSMMMG00000017823) #35
Eurasian red squirrel	MODERN SPECIES		ECHDC2 (ENSSVLG00005000395) #8	ZYG11A (ENSSVLG00005000332) #9	ENSSVLG00005000308 #10	COA7 (ENSSVLG00005000295) #11	SHISAL2A (ENSSVLG00005000179) #12	ENSSVLG00005020075	GPX7 (ENSSVLG00005019992) #13	TUT4 (ENSSVLG00005019510) #14	PRPF38A (ENSSVLG00005019181) #15	ORC1 (ENSSVLG00005018995) #16	CC2D1B (ENSSVLG00005018179) #17	ZFYVE9 (ENSSVLG00005017916) #18	BTF3L4 (ENSSVLG00005017708) #19	ENSSVLG00005017649	TXNDC12 (ENSSVLG00005017615) #20	RAB3B (ENSSVLG00005017555) #22	NRDC (ENSSVLG00005017058) #23	ENSSVLG00005016989	OSBPL9 (ENSSVLG00005016219) #24	ENSSVLG00005016060 #25	ENSSVLG00005016035	EPS15 (ENSSVLG00005015885) #26	TTC39A (ENSSVLG00005015332) #27	ENSSVLG00005015243 #28	ENSSVLG00005015219	C1orf185 (ENSSVLG00005015015) #29	CDKN2C (ENSSVLG00005014944) #30	FAF1 (ENSSVLG00005014843) #31	DMRTA2 (ENSSVLG00005014792) #32	ELAVL4 (ENSSVLG00005014154) #33	BEND5 (ENSSVLG00005013425) #35
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.nb #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00940000163721	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00950000183489	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.nb #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00940000163721	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Hystricomorpha_b	ANCESTRAL SPECIES	54	ENSGT00940000154327.b.e.a #7	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690.nb #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00940000163721	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.b #34	ENSGT00390000001724 #35	ENSGT00530000063821.b.a #36
Long-tailed chinchilla	MODERN SPECIES	171	SCP2 (ENSCLAG00000005478) #7	ECHDC2 (ENSCLAG00000006204) #8	ZYG11A (ENSCLAG00000006429) #9	ZYG11B (ENSCLAG00000007005) #10	COA7 (ENSCLAG00000007569) #11	SHISAL2A (ENSCLAG00000004758) #12	GPX7 (ENSCLAG00000004885) #13	TUT4 (ENSCLAG00000005255) #14	PRPF38A (ENSCLAG00000005816) #15	ORC1 (ENSCLAG00000005917) #16	CC2D1B (ENSCLAG00000006239) #17	ZFYVE9 (ENSCLAG00000006470) #18	BTF3L4 (ENSCLAG00000007659) #19	TXNDC12 (ENSCLAG00000004403) #20	ENSCLAG00000004470	RAB3B (ENSCLAG00000004516) #22	NRDC (ENSCLAG00000004925) #23	OSBPL9 (ENSCLAG00000006250) #24	ENSCLAG00000009812 #25	ENSCLAG00000004460	EPS15 (ENSCLAG00000005042) #26	TTC39A (ENSCLAG00000005328) #27	ENSCLAG00000006939	C1orf185 (ENSCLAG00000007634) #29	CDKN2C (ENSCLAG00000007763) #30	FAF1 (ENSCLAG00000008153) #31	DMRTA2 (ENSCLAG00000008314) #32	ELAVL4 (ENSCLAG00000005476) #33	AGBL4 (ENSCLAG00000006735) #34	BEND5 (ENSCLAG00000007168) #35	SPATA6 (ENSCLAG00000007504) #36
Degu	MODERN SPECIES	148	ZYG11B (ENSODEG00000007121) #10	ENSODEG00000005960	COA7 (ENSODEG00000006401) #11	SHISAL2A (ENSODEG00000006570) #12	ENSODEG00000005999 #13	ENSODEG00000006847	TUT4 (ENSODEG00000007328) #14	ENSODEG00000019366	ENSODEG00000005869 #15	ORC1 (ENSODEG00000006111) #16	CC2D1B (ENSODEG00000005964) #17	ENSODEG00000006003 #18	ENSODEG00000007049 #19	ENSODEG00000006041 #20	ENSODEG00000006614	RAB3B (ENSODEG00000008282) #22	NRDC (ENSODEG00000007264) #23	OSBPL9 (ENSODEG00000005945) #24	ENSODEG00000007342 #25	EPS15 (ENSODEG00000006324) #26	TTC39A (ENSODEG00000006441) #27	ENSODEG00000009489 #28	ENSODEG00000009865	ENSODEG00000006863	ENSODEG00000007244	CDKN2C (ENSODEG00000010220) #30	FAF1 (ENSODEG00000010743) #31	DMRTA2 (ENSODEG00000006537) #32	ELAVL4 (ENSODEG00000006770) #33	ENSODEG00000007109	AGBL4 (ENSODEG00000009564) #34
Guinea pig	MODERN SPECIES	112		ECHDC2 (ENSCPOG00000010469) #8	ZYG11A (ENSCPOG00000039722) #9	ZYG11B (ENSCPOG00000012898) #10	COA7 (ENSCPOG00000039755) #11	GPX7 (ENSCPOG00000039924) #13	TUT4 (ENSCPOG00000005086) #14	PRPF38A (ENSCPOG00000005079) #15	ORC1 (ENSCPOG00000005075) #16	CC2D1B (ENSCPOG00000005067) #17	ZFYVE9 (ENSCPOG00000005063) #18	ENSCPOG00000033698	BTF3L4 (ENSCPOG00000036248) #19	ENSCPOG00000031935	TXNDC12 (ENSCPOG00000038607) #20	RAB3B (ENSCPOG00000007714) #22	NRDC (ENSCPOG00000010677) #23	OSBPL9 (ENSCPOG00000010663) #24	ENSCPOG00000023884 #25	EPS15 (ENSCPOG00000009273) #26	TTC39A (ENSCPOG00000008138) #27	RNF11 (ENSCPOG00000031987) #28	CDKN2C (ENSCPOG00000031293) #30	FAF1 (ENSCPOG00000001151) #31	ENSCPOG00000030212	ENSCPOG00000002044 #33	BEND5 (ENSCPOG00000013879) #35	AGBL4 (ENSCPOG00000013872) #34	ENSCPOG00000013870 #36
Naked mole-rat female	MODERN SPECIES	26	ECHDC2 (ENSHGLG00000000790) #8	ENSHGLG00000040536 #11	SHISAL2A (ENSHGLG00000035245) #12	GPX7 (ENSHGLG00000038706) #13	ENSHGLG00000039303 #14	ENSHGLG00000037798	ENSHGLG00000000475 #15	ORC1 (ENSHGLG00000001033) #16	ENSHGLG00000000303 #18	ENSHGLG00000001719	ENSHGLG00000035847	BTF3L4 (ENSHGLG00000033881) #19	ENSHGLG00000046765 #20	ENSHGLG00000032066 #21	ENSHGLG00000000345	ENSHGLG00000031974 #22	ENSHGLG00000044000	ENSHGLG00000002902 #23	ENSHGLG00000032380	ENSHGLG00000001285 #24	ENSHGLG00000002972	ENSHGLG00000003489 #25	ENSHGLG00000000349 #26	ENSHGLG00000001310 #27	ENSHGLG00000034536	FAF1 (ENSHGLG00000000538) #31	CDKN2C (ENSHGLG00000034852) #30	DMRTA2 (ENSHGLG00000001509) #32	ENSHGLG00000037718	ELAVL4 (ENSHGLG00000000485) #33	ENSHGLG00000043536
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00940000154327.b.e.a #7	ENSGT00940000158798 #8	ENSGT00530000063187.B.b #9	ENSGT00530000063187.B.a #10	ENSGT00390000004835 #11	ENSGT00940000161304 #12	ENSGT00940000159127 #13	ENSGT00940000156988 #14	ENSGT00730000111085.A #15	ENSGT00530000063498.B #16	ENSGT00390000009595.a #17	ENSGT00940000154290.a #18	ENSGT00940000154296 #19	ENSGT00530000063273.a #20	ENSGT00900000142372	ENSGT00940000159943 #22	ENSGT00940000155026 #23	ENSGT00940000154690 #24	ENSGT00950000182915.b.b.b.a #25	ENSGT00940000155751 #26	ENSGT00950000182917.a.b.a #27	ENSGT00730000110988 #28	ENSGT00390000000797 #29	ENSGT00940000160194 #30	ENSGT00940000154831 #31	ENSGT00940000161649 #32	ENSGT00940000157399 #33	ENSGT00940000155042.a.b ##34	ENSGT00390000001724 #35	ENSGT00940000155042.b #34	ENSGT00530000063821.b.a #36
Rabbit	MODERN SPECIES	4	SCP2 (ENSOCUG00000002555) #7	ECHDC2 (ENSOCUG00000016774) #8	ZYG11A (ENSOCUG00000023070) #9	ZYG11B (ENSOCUG00000003181) #10	COA7 (ENSOCUG00000016049) #11	SHISAL2A (ENSOCUG00000029254) #12	GPX7 (ENSOCUG00000007319) #13	TUT4 (ENSOCUG00000002390) #14	PRPF38A (ENSOCUG00000000963) #15	ORC1 (ENSOCUG00000000962) #16	CC2D1B (ENSOCUG00000000959) #17	ZFYVE9 (ENSOCUG00000000956) #18	ENSOCUG00000001517 #19	TXNDC12 (ENSOCUG00000001972) #20	ENSOCUG00000033633	RAB3B (ENSOCUG00000001969) #22	NRDC (ENSOCUG00000004330) #23	OSBPL9 (ENSOCUG00000004303) #24	ENSOCUG00000023504 #25	EPS15 (ENSOCUG00000004293) #26	TTC39A (ENSOCUG00000007583) #27	RNF11 (ENSOCUG00000007582) #28	C1orf185 (ENSOCUG00000027363) #29	ENSOCUG00000038347	CDKN2C (ENSOCUG00000008385) #30	FAF1 (ENSOCUG00000031945) #31	DMRTA2 (ENSOCUG00000001019) #32	ELAVL4 (ENSOCUG00000016262) #33	ENSOCUG00000037999	ENSOCUG00000030354	ENSOCUG00000029778
Pika	MODERN SPECIES	530														BTF3L4 (ENSOPRG00000013335) #19	TXNDC12 (ENSOPRG00000013320) #20	RAB3B (ENSOPRG00000013308) #22	NRDC (ENSOPRG00000013243) #23	OSBPL9 (ENSOPRG00000013216) #24
Tree shrew	MODERN SPECIES	3626																RAB3B (ENSTBEG00000012353) #22