Rodentia_A ANCESTRAL SPECIES 14 ENSGT00940000153916.B ENSGT01030000234517.D ENSGT00940000155734.q #8 ENSGT00390000008041.C #9 ENSGT01100000263518.A.a.a.b #10 ENSGT00940000157219 #11 ENSGT00950000182986.a.b.a #12 ENSGT00940000161165 #13 ENSGT00390000012474 #14 ENSGT00940000155678 #15 ENSGT00940000158432.cb #17 ENSGT00390000015159.a.b #18 ENSGT00470000042500 #19 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00900000143081 #33 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 Sciuridae ANCESTRAL SPECIES 16 ENSGT00940000153916.B ENSGT01030000234517.D ENSGT00940000155734.q #8 ENSGT00390000008041.C #9 ENSGT01100000263518.A.a.a.b #10 ENSGT00940000157219 #11 ENSGT00950000182986.a.b.a #12 ENSGT00940000161165 #13 ENSGT00390000012474 #14 ENSGT00940000155678 #15 ENSGT00940000158432.cb #17 ENSGT00390000015159.a.b #18 ENSGT00470000042500 #19 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00900000143081 #33 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 Marmotini ANCESTRAL SPECIES 14 ENSGT00940000153916.B ENSGT01030000234517.D ENSGT00940000155734.q #8 ENSGT00390000008041.C #9 ENSGT01100000263518.A.a.a.b #10 ENSGT00940000157219 #11 ENSGT00950000182986.a.b.a #12 ENSGT00940000161165 #13 ENSGT00390000012474 #14 ENSGT00940000155678 #15 ENSGT00940000158432.cb #17 ENSGT00390000015159.a.b #18 ENSGT00470000042500 #19 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a.u.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00900000143081 #33 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 Marmotini_b ANCESTRAL SPECIES 17 ENSGT00940000153916.B ENSGT01030000234517.D ENSGT00940000155734.q #8 ENSGT00390000008041.C #9 ENSGT01100000263518.A.a.a.b #10 ENSGT00940000157219 #11 ENSGT00950000182986.a.b.a.k #12 ENSGT00940000161165 #13 ENSGT00390000012474 #14 ENSGT00940000155678 #15 ENSGT00940000158432.cb #17 ENSGT00390000015159.a.b #18 ENSGT00470000042500 #19 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a.u.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00900000143081 #33 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 Arctic ground squirrel MODERN SPECIES ENSUPAG00010011160 #7 E2F6 (ENSUPAG00010011151) #8 GREB1 (ENSUPAG00010011107) #9 NTSR2 (ENSUPAG00010011106) #10 LPIN1 (ENSUPAG00010009943) #11 TRIB2 (ENSUPAG00010009911) #12 LRATD1 (ENSUPAG00010009896) #13 NBAS (ENSUPAG00010009750) #14 DDX1 (ENSUPAG00010009711) #15 ENSUPAG00010009708 #16 MYCN (ENSUPAG00010009702) #17 CYRIA (ENSUPAG00010009668) #18 RAD51AP2 (ENSUPAG00010009663) #19 VSNL1 (ENSUPAG00010009655) #20 SMC6 (ENSUPAG00010009564) #21 GEN1 (ENSUPAG00010009557) #22 MSGN1 (ENSUPAG00010009556) #23 RDH14 (ENSUPAG00010009546) #24 ENSUPAG00010009474 #25 OSR1 (ENSUPAG00010009451) #26 TTC32 (ENSUPAG00010009436) #27 WDR35 (ENSUPAG00010009354) #28 MATN3 (ENSUPAG00010009339) #29 LAPTM4A (ENSUPAG00010009333) #30 SDC1 (ENSUPAG00010009310) #31 ENSUPAG00010009303 #32 ENSUPAG00010009301 #33 PUM2 (ENSUPAG00010009123) #34 ENSUPAG00010009092 #35 RHOB (ENSUPAG00010009084) #36 HS1BP3 (ENSUPAG00010009063) #37 Squirrel MODERN SPECIES 93 NBAS (ENSSTOG00000008943) #14 DDX1 (ENSSTOG00000003977) #15 MYCN (ENSSTOG00000012252) #17 CYRIA (ENSSTOG00000022187) #18 ENSSTOG00000025212 #19 VSNL1 (ENSSTOG00000010438) #20 SMC6 (ENSSTOG00000013946) #21 GEN1 (ENSSTOG00000013963) #22 MSGN1 (ENSSTOG00000013981) #23 KCNS3 (ENSSTOG00000012420) RDH14 (ENSSTOG00000021114) #24 NT5C1B (ENSSTOG00000014834) ##25 OSR1 (ENSSTOG00000015454) #26 TTC32 (ENSSTOG00000007140) #27 WDR35 (ENSSTOG00000007151) #28 MATN3 (ENSSTOG00000019530) #29 ENSSTOG00000007214 #30 SDC1 (ENSSTOG00000028519) #31 ENSSTOG00000033291 ##32 PUM2 (ENSSTOG00000006262) #34 ENSSTOG00000023326 #35 ENSSTOG00000014644 #36 HS1BP3 (ENSSTOG00000004973) #37 Alpin marmot MODERN SPECIES 6 SLC66A3 (ENSMMMG00000022562) ROCK2 (ENSMMMG00000022550) E2F6 (ENSMMMG00000022544) #8 GREB1 (ENSMMMG00000022514) #9 LPIN1 (ENSMMMG00000022468) #11 TRIB2 (ENSMMMG00000022461) #12 LRATD1 (ENSMMMG00000022451) #13 NBAS (ENSMMMG00000022403) #14 DDX1 (ENSMMMG00000022392) #15 ENSMMMG00000022387 #17 ENSMMMG00000022385 #17 CYRIA (ENSMMMG00000022371) #18 RAD51AP2 (ENSMMMG00000022347) #19 VSNL1 (ENSMMMG00000022330) #20 SMC6 (ENSMMMG00000022309) #21 GEN1 (ENSMMMG00000022304) #22 MSGN1 (ENSMMMG00000022303) #23 KCNS3 (ENSMMMG00000022292) RDH14 (ENSMMMG00000022280) #24 ENSMMMG00000022251 #25 OSR1 (ENSMMMG00000022239) #26 TTC32 (ENSMMMG00000022212) #27 WDR35 (ENSMMMG00000022195) #28 MATN3 (ENSMMMG00000022186) #29 LAPTM4A (ENSMMMG00000022160) #30 SDC1 (ENSMMMG00000022131) #31 ENSMMMG00000022129 #33 PUM2 (ENSMMMG00000022116) #34 ENSMMMG00000022089 #35 RHOB (ENSMMMG00000022086) #36 HS1BP3 (ENSMMMG00000022083) #37 Eurasian red squirrel MODERN SPECIES 5 NTSR2 (ENSSVLG00005017070) #10 LPIN1 (ENSSVLG00005016318) #11 TRIB2 (ENSSVLG00005016251) #12 ENSSVLG00005016163 LRATD1 (ENSSVLG00005025440) #13 NBAS (ENSSVLG00005025400) #14 ENSSVLG00005025381 DDX1 (ENSSVLG00005025306) #15 ENSSVLG00005025265 ENSSVLG00005025253 #17 CYRIA (ENSSVLG00005025229) #18 ENSSVLG00005025209 RAD51AP2 (ENSSVLG00005025196) #19 VSNL1 (ENSSVLG00005025182) #20 SMC6 (ENSSVLG00005025164) #21 GEN1 (ENSSVLG00005025123) #22 MSGN1 (ENSSVLG00005025107) #23 KCNS3 (ENSSVLG00005025089) ENSSVLG00005025079 RDH14 (ENSSVLG00005025062) #24 NT5C1B (ENSSVLG00005025002) #25 OSR1 (ENSSVLG00005024914) #26 TTC32 (ENSSVLG00005024889) #27 WDR35 (ENSSVLG00005024826) #28 MATN3 (ENSSVLG00005024711) #29 LAPTM4A (ENSSVLG00005024670) #30 SDC1 (ENSSVLG00005024647) #31 ENSSVLG00005024506 #34 ENSSVLG00005024370 #35 RHOB (ENSSVLG00005024328) #36 HS1BP3 (ENSSVLG00005024304) #37 Hystricomorpha ANCESTRAL SPECIES 8 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00900000143081 #33 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 Hystricomorpha_a ANCESTRAL SPECIES 31 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00900000143081 #33 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 Hystricomorpha_b ANCESTRAL SPECIES 26 ENSGT00940000156513 #20 ENSGT00550000074816.A.a #21 ENSGT00940000159266 #22 ENSGT00530000063712.a.b #23 ENSGT00940000155979 ENSGT00940000160181 #24 ENSGT00390000017767.b.a #25 ENSGT00940000158993 #26 ENSGT00390000011905 #27 ENSGT00940000155745 #28 ENSGT00940000157581 #29 ENSGT00940000153446.b #30 ENSGT00940000161171 #31 ENSGT00940000157575 #34 ENSGT00940000162520.d #35 ENSGT00950000182945.b.a.a.b.b.b #36 ENSGT00390000013092 #37 ENSGT00940000160140.b Long-tailed chinchilla MODERN SPECIES 176 ENSCLAG00000013272 VSNL1 (ENSCLAG00000011222) #20 SMC6 (ENSCLAG00000012919) #21 GEN1 (ENSCLAG00000008865) #22 MSGN1 (ENSCLAG00000015119) #23 KCNS3 (ENSCLAG00000013937) RDH14 (ENSCLAG00000009341) #24 NT5C1B (ENSCLAG00000008659) #25 OSR1 (ENSCLAG00000009423) #26 TTC32 (ENSCLAG00000009839) #27 WDR35 (ENSCLAG00000007929) #28 MATN3 (ENSCLAG00000006019) #29 LAPTM4A (ENSCLAG00000006983) #30 SDC1 (ENSCLAG00000007345) #31 PUM2 (ENSCLAG00000006048) #34 ENSCLAG00000005814 #35 RHOB (ENSCLAG00000017801) #36 HS1BP3 (ENSCLAG00000008832) #37 LDAH (ENSCLAG00000011308) Degu MODERN SPECIES 60 ENSODEG00000009441 ENSODEG00000009977 SGCB (ENSODEG00000009784) ENSODEG00000009044 ENSODEG00000009096 CWH43 (ENSODEG00000009451) OCIAD2 (ENSODEG00000010340) ENSODEG00000010537 OCIAD1 (ENSODEG00000009198) FRYL (ENSODEG00000009331) ENSODEG00000008772 SLC10A4 (ENSODEG00000010331) ENSODEG00000008159 VSNL1 (ENSODEG00000008555) #20 SMC6 (ENSODEG00000008987) #21 GEN1 (ENSODEG00000010156) #22 MSGN1 (ENSODEG00000009615) #23 ENSODEG00000019755 KCNS3 (ENSODEG00000009066) RDH14 (ENSODEG00000008458) #24 NT5C1B (ENSODEG00000008929) #25 OSR1 (ENSODEG00000008728) #26 TTC32 (ENSODEG00000009280) #27 WDR35 (ENSODEG00000012693) #28 MATN3 (ENSODEG00000008451) #29 LAPTM4A (ENSODEG00000008579) #30 SDC1 (ENSODEG00000010758) #31 ENSODEG00000008774 PUM2 (ENSODEG00000007823) #34 ENSODEG00000010362 #35 RHOB (ENSODEG00000019841) #36 Guinea pig MODERN SPECIES 18 VSNL1 (ENSCPOG00000030283) #20 SMC6 (ENSCPOG00000014752) #21 GEN1 (ENSCPOG00000033894) #22 MSGN1 (ENSCPOG00000003061) #23 KCNS3 (ENSCPOG00000009232) RDH14 (ENSCPOG00000022651) #24 NT5C1B (ENSCPOG00000012761) #25 OSR1 (ENSCPOG00000002025) #26 TTC32 (ENSCPOG00000033658) #27 WDR35 (ENSCPOG00000007053) #28 MATN3 (ENSCPOG00000004739) #29 LAPTM4A (ENSCPOG00000009690) #30 SDC1 (ENSCPOG00000008875) #31 ENSCPOG00000007075 #33 PUM2 (ENSCPOG00000031996) #34 ENSCPOG00000037907 #35 HS1BP3 (ENSCPOG00000000278) #37 LDAH (ENSCPOG00000012586) Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 11 ENSHGLG00000008939 SAMSN1 (ENSHGLG00000015900) HSPA13 (ENSHGLG00000043774) RBM11 (ENSHGLG00000013951) ENSHGLG00000016407 ENSHGLG00000005987 ENSHGLG00000042984 ENSHGLG00000037863 ENSHGLG00000000774 ENSHGLG00000045735 ENSHGLG00000001440 ENSHGLG00000035920 ENSHGLG00000046617 ENSHGLG00000003293 ENSHGLG00000002905 ENSHGLG00000037292 #22 VGLL3 (ENSHGLG00000000912) ENSHGLG00000050433 CHMP2B (ENSHGLG00000000954) POU1F1 (ENSHGLG00000001001) ENSHGLG00000032647 ENSHGLG00000047444 ENSHGLG00000001380 ENSHGLG00000032052 ENSHGLG00000042763 CGGBP1 (ENSHGLG00000034659) ZNF654 (ENSHGLG00000001844) ENSHGLG00000037445 C3orf38 (ENSHGLG00000002435) ENSHGLG00000041404 EPHA3 (ENSHGLG00000003586) Naked mole-rat female MODERN SPECIES 11 ENSHGLG00000002072 ENSHGLG00000031903 ENSHGLG00000006911 HECTD1 (ENSHGLG00000004613) ENSHGLG00000038178 HEATR5A (ENSHGLG00000002799) ENSHGLG00000038655 DTD2 (ENSHGLG00000046094) GPR33 (ENSHGLG00000019958) ENSHGLG00000001878 NUBPL (ENSHGLG00000043820) ENSHGLG00000003444 ENSHGLG00000043700 ENSHGLG00000003356 ENSHGLG00000050973 ENSHGLG00000048569 #22 ENSHGLG00000036198 ENSHGLG00000050257 ENSHGLG00000001333 ENSHGLG00000001019 ENSHGLG00000045174 ENSHGLG00000000723 ENSHGLG00000001684 ENSHGLG00000001381 ENSHGLG00000032861 ENSHGLG00000002049 ENSHGLG00000046910 EAPP (ENSHGLG00000035378) SNX6 (ENSHGLG00000002236) CFL2 (ENSHGLG00000001467) ENSHGLG00000047884 Naked mole-rat female MODERN SPECIES 30 ENSHGLG00000036392 ENSHGLG00000050705 ENSHGLG00000035577 ENSHGLG00000012435 ENSHGLG00000040813 ENSHGLG00000002743 ENSHGLG00000001556 FBXO25 (ENSHGLG00000001395) ENSHGLG00000012555 ENSHGLG00000044269 ENSHGLG00000032967 ENSHGLG00000037485 ENSHGLG00000042446 ENSHGLG00000016211 #20 ENSHGLG00000016450 #21 GEN1 (ENSHGLG00000015449) #22 ENSHGLG00000017189 #23 ENSHGLG00000046477 ENSHGLG00000045872 ENSHGLG00000008037 ENSHGLG00000007715 ENSHGLG00000006288 ENSHGLG00000007387 ENSHGLG00000011910 ENSHGLG00000043882 ENSHGLG00000044427 NKAPL (ENSHGLG00000035910) ENSHGLG00000043206 ENSHGLG00000005144 ENSHGLG00000039085 ENSHGLG00000005106