Amniota	ANCESTRAL SPECIES	1	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000177852
Mammalia	ANCESTRAL SPECIES	38	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35
Theria	ANCESTRAL SPECIES	35	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Glires	ANCESTRAL SPECIES	13	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734.q #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.cb #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734.q #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.cb #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734.q #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.cb #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a.u.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Alpin marmot	MODERN SPECIES	6	SLC66A3 (ENSMMMG00000022562) #7	ROCK2 (ENSMMMG00000022550) #8	E2F6 (ENSMMMG00000022544) #9	GREB1 (ENSMMMG00000022514) #10	LPIN1 (ENSMMMG00000022468) #12	TRIB2 (ENSMMMG00000022461) #13	LRATD1 (ENSMMMG00000022451) #14	NBAS (ENSMMMG00000022403) #15	DDX1 (ENSMMMG00000022392) #16	ENSMMMG00000022387 #17	ENSMMMG00000022385 #17	CYRIA (ENSMMMG00000022371) #18	RAD51AP2 (ENSMMMG00000022347) #19	VSNL1 (ENSMMMG00000022330) #20	SMC6 (ENSMMMG00000022309) #21	GEN1 (ENSMMMG00000022304) #22	MSGN1 (ENSMMMG00000022303) #23	KCNS3 (ENSMMMG00000022292) #24	RDH14 (ENSMMMG00000022280) #25	ENSMMMG00000022251 #26	OSR1 (ENSMMMG00000022239) #27	TTC32 (ENSMMMG00000022212) #28	WDR35 (ENSMMMG00000022195) #29	MATN3 (ENSMMMG00000022186) #30	LAPTM4A (ENSMMMG00000022160) #31	SDC1 (ENSMMMG00000022131) #32	ENSMMMG00000022129 #33	PUM2 (ENSMMMG00000022116) #34	ENSMMMG00000022089 #35	RHOB (ENSMMMG00000022086) #36	HS1BP3 (ENSMMMG00000022083) #37
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734.q #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a.k #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.cb #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a.u.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Arctic ground squirrel	MODERN SPECIES		ENSUPAG00010011160	E2F6 (ENSUPAG00010011151) #9	GREB1 (ENSUPAG00010011107) #10	NTSR2 (ENSUPAG00010011106) #11	LPIN1 (ENSUPAG00010009943) #12	TRIB2 (ENSUPAG00010009911) #13	LRATD1 (ENSUPAG00010009896) #14	NBAS (ENSUPAG00010009750) #15	DDX1 (ENSUPAG00010009711) #16	ENSUPAG00010009708	MYCN (ENSUPAG00010009702) #17	CYRIA (ENSUPAG00010009668) #18	RAD51AP2 (ENSUPAG00010009663) #19	VSNL1 (ENSUPAG00010009655) #20	SMC6 (ENSUPAG00010009564) #21	GEN1 (ENSUPAG00010009557) #22	MSGN1 (ENSUPAG00010009556) #23	RDH14 (ENSUPAG00010009546) #25	ENSUPAG00010009474 #26	OSR1 (ENSUPAG00010009451) #27	TTC32 (ENSUPAG00010009436) #28	WDR35 (ENSUPAG00010009354) #29	MATN3 (ENSUPAG00010009339) #30	LAPTM4A (ENSUPAG00010009333) #31	SDC1 (ENSUPAG00010009310) #32	ENSUPAG00010009303	ENSUPAG00010009301 #33	PUM2 (ENSUPAG00010009123) #34	ENSUPAG00010009092 #35	RHOB (ENSUPAG00010009084) #36	HS1BP3 (ENSUPAG00010009063) #37
Squirrel	MODERN SPECIES	93									NBAS (ENSSTOG00000008943) #15	DDX1 (ENSSTOG00000003977) #16	MYCN (ENSSTOG00000012252) #17	CYRIA (ENSSTOG00000022187) #18	ENSSTOG00000025212 #19	VSNL1 (ENSSTOG00000010438) #20	SMC6 (ENSSTOG00000013946) #21	GEN1 (ENSSTOG00000013963) #22	MSGN1 (ENSSTOG00000013981) #23	KCNS3 (ENSSTOG00000012420) #24	RDH14 (ENSSTOG00000021114) #25	NT5C1B (ENSSTOG00000014834) #26	OSR1 (ENSSTOG00000015454) #27	TTC32 (ENSSTOG00000007140) #28	WDR35 (ENSSTOG00000007151) #29	MATN3 (ENSSTOG00000019530) #30	ENSSTOG00000007214 #31	SDC1 (ENSSTOG00000028519) #32	ENSSTOG00000033291	PUM2 (ENSSTOG00000006262) #34	ENSSTOG00000023326 #35	ENSSTOG00000014644 #36	HS1BP3 (ENSSTOG00000004973) #37
Eurasian red squirrel	MODERN SPECIES	5	NTSR2 (ENSSVLG00005017070) #11	LPIN1 (ENSSVLG00005016318) #12	TRIB2 (ENSSVLG00005016251) #13	ENSSVLG00005016163	LRATD1 (ENSSVLG00005025440) #14	NBAS (ENSSVLG00005025400) #15	ENSSVLG00005025381	DDX1 (ENSSVLG00005025306) #16	ENSSVLG00005025265	ENSSVLG00005025253 #17	CYRIA (ENSSVLG00005025229) #18	ENSSVLG00005025209	RAD51AP2 (ENSSVLG00005025196) #19	VSNL1 (ENSSVLG00005025182) #20	SMC6 (ENSSVLG00005025164) #21	GEN1 (ENSSVLG00005025123) #22	MSGN1 (ENSSVLG00005025107) #23	KCNS3 (ENSSVLG00005025089) #24	ENSSVLG00005025079	RDH14 (ENSSVLG00005025062) #25	NT5C1B (ENSSVLG00005025002) #26	OSR1 (ENSSVLG00005024914) #27	TTC32 (ENSSVLG00005024889) #28	WDR35 (ENSSVLG00005024826) #29	MATN3 (ENSSVLG00005024711) #30	LAPTM4A (ENSSVLG00005024670) #31	SDC1 (ENSSVLG00005024647) #32	ENSSVLG00005024506 #34	ENSSVLG00005024370 #35	RHOB (ENSSVLG00005024328) #36	HS1BP3 (ENSSVLG00005024304) #37
Hystricomorpha	ANCESTRAL SPECIES	8														ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Hystricomorpha_a	ANCESTRAL SPECIES	31														ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Hystricomorpha_b	ANCESTRAL SPECIES	26														ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Long-tailed chinchilla	MODERN SPECIES	176													ENSCLAG00000013272	VSNL1 (ENSCLAG00000011222) #20	SMC6 (ENSCLAG00000012919) #21	GEN1 (ENSCLAG00000008865) #22	MSGN1 (ENSCLAG00000015119) #23	KCNS3 (ENSCLAG00000013937) #24	RDH14 (ENSCLAG00000009341) #25	NT5C1B (ENSCLAG00000008659) #26	OSR1 (ENSCLAG00000009423) #27	TTC32 (ENSCLAG00000009839) #28	WDR35 (ENSCLAG00000007929) #29	MATN3 (ENSCLAG00000006019) #30	LAPTM4A (ENSCLAG00000006983) #31	SDC1 (ENSCLAG00000007345) #32	PUM2 (ENSCLAG00000006048) #34	ENSCLAG00000005814 #35	RHOB (ENSCLAG00000017801) #36	HS1BP3 (ENSCLAG00000008832) #37	LDAH (ENSCLAG00000011308)
Degu	MODERN SPECIES	60	ENSODEG00000009441	ENSODEG00000009977	SGCB (ENSODEG00000009784)	ENSODEG00000009044	ENSODEG00000009096	CWH43 (ENSODEG00000009451)	OCIAD2 (ENSODEG00000010340)	ENSODEG00000010537	OCIAD1 (ENSODEG00000009198)	FRYL (ENSODEG00000009331)	ENSODEG00000008772	SLC10A4 (ENSODEG00000010331)	ENSODEG00000008159	VSNL1 (ENSODEG00000008555) #20	SMC6 (ENSODEG00000008987) #21	GEN1 (ENSODEG00000010156) #22	MSGN1 (ENSODEG00000009615) #23	ENSODEG00000019755	KCNS3 (ENSODEG00000009066) #24	RDH14 (ENSODEG00000008458) #25	NT5C1B (ENSODEG00000008929) #26	OSR1 (ENSODEG00000008728) #27	TTC32 (ENSODEG00000009280) #28	WDR35 (ENSODEG00000012693) #29	MATN3 (ENSODEG00000008451) #30	LAPTM4A (ENSODEG00000008579) #31	SDC1 (ENSODEG00000010758) #32	ENSODEG00000008774	PUM2 (ENSODEG00000007823) #34	ENSODEG00000010362 #35	RHOB (ENSODEG00000019841) #36
Guinea pig	MODERN SPECIES	18														VSNL1 (ENSCPOG00000030283) #20	SMC6 (ENSCPOG00000014752) #21	GEN1 (ENSCPOG00000033894) #22	MSGN1 (ENSCPOG00000003061) #23	KCNS3 (ENSCPOG00000009232) #24	RDH14 (ENSCPOG00000022651) #25	NT5C1B (ENSCPOG00000012761) #26	OSR1 (ENSCPOG00000002025) #27	TTC32 (ENSCPOG00000033658) #28	WDR35 (ENSCPOG00000007053) #29	MATN3 (ENSCPOG00000004739) #30	LAPTM4A (ENSCPOG00000009690) #31	SDC1 (ENSCPOG00000008875) #32	ENSCPOG00000007075 #33	PUM2 (ENSCPOG00000031996) #34	ENSCPOG00000037907 #35	HS1BP3 (ENSCPOG00000000278) #37	LDAH (ENSCPOG00000012586)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000008939	SAMSN1 (ENSHGLG00000015900)	HSPA13 (ENSHGLG00000043774)	RBM11 (ENSHGLG00000013951)	ENSHGLG00000016407	ENSHGLG00000005987	ENSHGLG00000042984	ENSHGLG00000037863	ENSHGLG00000000774	ENSHGLG00000045735	ENSHGLG00000001440	ENSHGLG00000035920	ENSHGLG00000046617	ENSHGLG00000003293	ENSHGLG00000002905	ENSHGLG00000037292 #22	VGLL3 (ENSHGLG00000000912)	ENSHGLG00000050433	CHMP2B (ENSHGLG00000000954)	POU1F1 (ENSHGLG00000001001)	ENSHGLG00000032647	ENSHGLG00000047444	ENSHGLG00000001380	ENSHGLG00000032052	ENSHGLG00000042763	CGGBP1 (ENSHGLG00000034659)	ZNF654 (ENSHGLG00000001844)	ENSHGLG00000037445	C3orf38 (ENSHGLG00000002435)	ENSHGLG00000041404	EPHA3 (ENSHGLG00000003586)
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000002072	ENSHGLG00000031903	ENSHGLG00000006911	HECTD1 (ENSHGLG00000004613)	ENSHGLG00000038178	HEATR5A (ENSHGLG00000002799)	ENSHGLG00000038655	DTD2 (ENSHGLG00000046094)	GPR33 (ENSHGLG00000019958)	ENSHGLG00000001878	NUBPL (ENSHGLG00000043820)	ENSHGLG00000003444	ENSHGLG00000043700	ENSHGLG00000003356	ENSHGLG00000050973	ENSHGLG00000048569 #22	ENSHGLG00000036198	ENSHGLG00000050257	ENSHGLG00000001333	ENSHGLG00000001019	ENSHGLG00000045174	ENSHGLG00000000723	ENSHGLG00000001684	ENSHGLG00000001381	ENSHGLG00000032861	ENSHGLG00000002049	ENSHGLG00000046910	EAPP (ENSHGLG00000035378)	SNX6 (ENSHGLG00000002236)	CFL2 (ENSHGLG00000001467)	ENSHGLG00000047884
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000036392	ENSHGLG00000050705	ENSHGLG00000035577	ENSHGLG00000012435	ENSHGLG00000040813	ENSHGLG00000002743	ENSHGLG00000001556	FBXO25 (ENSHGLG00000001395)	ENSHGLG00000012555	ENSHGLG00000044269	ENSHGLG00000032967	ENSHGLG00000037485	ENSHGLG00000042446	ENSHGLG00000016211 #20	ENSHGLG00000016450 #21	GEN1 (ENSHGLG00000015449) #22	ENSHGLG00000017189 #23	ENSHGLG00000046477	ENSHGLG00000045872	ENSHGLG00000008037	ENSHGLG00000007715	ENSHGLG00000006288	ENSHGLG00000007387	ENSHGLG00000011910	ENSHGLG00000043882	ENSHGLG00000044427	NKAPL (ENSHGLG00000035910)	ENSHGLG00000043206	ENSHGLG00000005144	ENSHGLG00000039085	ENSHGLG00000005106
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Muroidea	ANCESTRAL SPECIES	21	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165.c #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Chinese hamster chok1gshd	MODERN SPECIES	229	E2f6 (ENSCGRG00001013963) #9	Greb1 (ENSCGRG00001018970) #10	Ntsr2 (ENSCGRG00001012327) #11	Lpin1 (ENSCGRG00001000692) #12	Trib2 (ENSCGRG00001024816) #13	ENSCGRG00001013482	ENSCGRG00001013069	ENSCGRG00001002169 #14	Nbas (ENSCGRG00001001919) #15	Ddx1 (ENSCGRG00001013025) #16	Mycn (ENSCGRG00001018130) ##17	Cyria (ENSCGRG00001014064) #18	ENSCGRG00001012128	Vsnl1 (ENSCGRG00001017035) #20	Smc6 (ENSCGRG00001024287) #21	ENSCGRG00001019699 #22	Msgn1 (ENSCGRG00001003369) #23	Kcns3 (ENSCGRG00001004289) #24	ENSCGRG00001006912	Rdh14 (ENSCGRG00001024177) #25	Nt5c1b (ENSCGRG00001016775) #26	Osr1 (ENSCGRG00001009653) #27	Ttc32 (ENSCGRG00001007763) #28	Wdr35 (ENSCGRG00001004220) #29	Matn3 (ENSCGRG00001025049) #30	Laptm4a (ENSCGRG00001021474) #31	SDC1 (ENSCGRG00001018173) #32	Pum2 (ENSCGRG00001025023) #34	Slc7a15 (ENSCGRG00001018113) #35	Rhob (ENSCGRG00001001843) #36	Hs1bp3 (ENSCGRG00001015945) #37
Golden Hamster	MODERN SPECIES	367																ENSMAUG00000007689 #22
Cricetidae_B	ANCESTRAL SPECIES	43	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Northern American deer mouse	MODERN SPECIES	14	E2f6 (ENSPEMG00000020192) #9	Greb1 (ENSPEMG00000020144) #10	Ntsr2 (ENSPEMG00000007290) #11	Lpin1 (ENSPEMG00000005628) #12	Trib2 (ENSPEMG00000027972) #13	ENSPEMG00000030202	Lratd1 (ENSPEMG00000027364) #14	Nbas (ENSPEMG00000000126) #15	Ddx1 (ENSPEMG00000016389) #16	ENSPEMG00000027724	Mycn (ENSPEMG00000014767) ##17	Cyria (ENSPEMG00000025578) #18	ENSPEMG00000027568	Vsnl1 (ENSPEMG00000028838) #20	ENSPEMG00000024461 #21	Gen1 (ENSPEMG00000001855) #22	Msgn1 (ENSPEMG00000007522) #23	ENSPEMG00000007987	Kcns3 (ENSPEMG00000011462) #24	ENSPEMG00000025389	ENSPEMG00000000184	Rdh14 (ENSPEMG00000018416) #25	Nt5c1b (ENSPEMG00000013187) #26	Osr1 (ENSPEMG00000008344) #27	Ttc32 (ENSPEMG00000027871) #28	Wdr35 (ENSPEMG00000004790) #29	Matn3 (ENSPEMG00000017106) #30	Laptm4a (ENSPEMG00000015789) #31	Sdc1 (ENSPEMG00000010998) #32	ENSPEMG00000024635 #33	Pum2 (ENSPEMG00000008357) #34
Prairie vole	MODERN SPECIES	93	Greb1 (ENSMOCG00000012442) #10	Ntsr2 (ENSMOCG00000005558) #11	Lpin1 (ENSMOCG00000014921) #12	ENSMOCG00000002531	Trib2 (ENSMOCG00000006314) #13	Lratd1 (ENSMOCG00000015863) #14	Nbas (ENSMOCG00000009751) #15	Ddx1 (ENSMOCG00000000257) #16	Mycn (ENSMOCG00000012273) ##17	Cyria (ENSMOCG00000015524) #18	ENSMOCG00000004702	ENSMOCG00000002918	Rad51ap2 (ENSMOCG00000012235) #19	Vsnl1 (ENSMOCG00000000359) #20	Smc6 (ENSMOCG00000009440) #21	Gen1 (ENSMOCG00000000146) #22	Msgn1 (ENSMOCG00000003059) #23
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Mus	ANCESTRAL SPECIES	10	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Mouse	MODERN SPECIES	3	Pqlc3 (ENSMUSG00000045679) #7	Rock2 (ENSMUSG00000020580) #8	E2f6 (ENSMUSG00000057469) #9	Greb1 (ENSMUSG00000036523) #10	Ntsr2 (ENSMUSG00000020591) #11	Lpin1 (ENSMUSG00000020593) #12	Trib2 (ENSMUSG00000020601) #13	Lratd1 (ENSMUSG00000020607) #14	Nbas (ENSMUSG00000020576) #15	Ddx1 (ENSMUSG00000037149) #16	Mycn (ENSMUSG00000037169) ##17	Cyria (ENSMUSG00000020589) #18	Rad51ap2 (ENSMUSG00000086022) #19	Vsnl1 (ENSMUSG00000054459) #20	Smc6 (ENSMUSG00000020608) #21	Gen1 (ENSMUSG00000051235) #22	Msgn1 (ENSMUSG00000047002) #23	Kcns3 (ENSMUSG00000043673) #24	Rdh14 (ENSMUSG00000020621) #25	Nt5c1b (ENSMUSG00000020622) #26	Osr1 (ENSMUSG00000048387) #27	Ttc32 (ENSMUSG00000066637) #28	Wdr35 (ENSMUSG00000066643) #29	Matn3 (ENSMUSG00000020583) #30	Laptm4a (ENSMUSG00000020585) #31	Sdc1 (ENSMUSG00000020592) #32	Pum2 (ENSMUSG00000020594) #34	Slc7a15 (ENSMUSG00000020600) #35	Rhob (ENSMUSG00000054364) #36	Hs1bp3 (ENSMUSG00000020605) #37	Gdf7 (ENSMUSG00000037660)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000153916.B.c #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a ##17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Steppe mouse	MODERN SPECIES	66														Vsnl1 (ENSMSIG00000003607) #20	Smc6 (ENSMSIG00000003533) #21	Gen1 (ENSMSIG00000003465) #22	Msgn1 (ENSMSIG00000003441) #23	Kcns3 (ENSMSIG00000003427) #24
spretus	MODERN SPECIES	3	MGP_SPRETEiJ_G0018473 #7	Rock2 (MGP_SPRETEiJ_G0018472) #8	E2f6 (MGP_SPRETEiJ_G0018471) #9	Greb1 (MGP_SPRETEiJ_G0018470) #10	Ntsr2 (MGP_SPRETEiJ_G0018469) #11	Lpin1 (MGP_SPRETEiJ_G0018468) #12	Trib2 (MGP_SPRETEiJ_G0018467) #13	Lratd1 (MGP_SPRETEiJ_G0018466) #14	Nbas (MGP_SPRETEiJ_G0018465) #15	Ddx1 (MGP_SPRETEiJ_G0018464) #16	Mycn (MGP_SPRETEiJ_G0018463) ##17	Cyria (MGP_SPRETEiJ_G0018462) #18	Rad51ap2 (MGP_SPRETEiJ_G0018461) #19	Vsnl1 (MGP_SPRETEiJ_G0018460) #20	Smc6 (MGP_SPRETEiJ_G0018459) #21	Gen1 (MGP_SPRETEiJ_G0018458) #22	Msgn1 (MGP_SPRETEiJ_G0018457) #23	Kcns3 (MGP_SPRETEiJ_G0018456) #24	Rdh14 (MGP_SPRETEiJ_G0018455) #25	Nt5c1b (MGP_SPRETEiJ_G0018454) #26	Osr1 (MGP_SPRETEiJ_G0018453) #27	Ttc32 (MGP_SPRETEiJ_G0018452) #28	Wdr35 (MGP_SPRETEiJ_G0018451) #29	Matn3 (MGP_SPRETEiJ_G0018450) #30	MGP_SPRETEiJ_G0018449 #31	Sdc1 (MGP_SPRETEiJ_G0018448) #32	Pum2 (MGP_SPRETEiJ_G0018447) #34	Slc7a15 (MGP_SPRETEiJ_G0018446) #35	Rhob (MGP_SPRETEiJ_G0018445) #36	Hs1bp3 (MGP_SPRETEiJ_G0018444) #37	Gdf7 (MGP_SPRETEiJ_G0018443)
Ryukyu mouse	MODERN SPECIES	3	MGP_CAROLIEiJ_G0017631 #7	Rock2 (MGP_CAROLIEiJ_G0017630) #8	MGP_CAROLIEiJ_G0017629 #9	Greb1 (MGP_CAROLIEiJ_G0017628) #10	Ntsr2 (MGP_CAROLIEiJ_G0017627) #11	Lpin1 (MGP_CAROLIEiJ_G0017626) #12	Trib2 (MGP_CAROLIEiJ_G0017625) #13	Lratd1 (MGP_CAROLIEiJ_G0017624) #14	Nbas (MGP_CAROLIEiJ_G0017623) #15	Ddx1 (MGP_CAROLIEiJ_G0017622) #16	Mycn (MGP_CAROLIEiJ_G0017621) ##17	Cyria (MGP_CAROLIEiJ_G0017620) #18	Rad51ap2 (MGP_CAROLIEiJ_G0017619) #19	Vsnl1 (MGP_CAROLIEiJ_G0017618) #20	Smc6 (MGP_CAROLIEiJ_G0017617) #21	Gen1 (MGP_CAROLIEiJ_G0017616) #22	Msgn1 (MGP_CAROLIEiJ_G0017615) #23	MGP_CAROLIEiJ_G0017614	Vmn1r200 (MGP_CAROLIEiJ_G0017613)	Kcns3 (MGP_CAROLIEiJ_G0017612) #24	Rdh14 (MGP_CAROLIEiJ_G0017611) #25	Nt5c1b (MGP_CAROLIEiJ_G0017610) #26	Osr1 (MGP_CAROLIEiJ_G0017609) #27	Ttc32 (MGP_CAROLIEiJ_G0017608) #28	Wdr35 (MGP_CAROLIEiJ_G0017607) #29	Matn3 (MGP_CAROLIEiJ_G0017606) #30	MGP_CAROLIEiJ_G0017605 #31	Sdc1 (MGP_CAROLIEiJ_G0017604) #32	Pum2 (MGP_CAROLIEiJ_G0017603) #34	Slc7a15 (MGP_CAROLIEiJ_G0017602) #35	Rhob (MGP_CAROLIEiJ_G0017601) #36
Shrew mouse	MODERN SPECIES	20	Rock2 (MGP_PahariEiJ_G0029387) #8	MGP_PahariEiJ_G0029386	E2f6 (MGP_PahariEiJ_G0029385) #9	Greb1 (MGP_PahariEiJ_G0029384) #10	MGP_PahariEiJ_G0029383 #11	Lpin1 (MGP_PahariEiJ_G0029382) #12	Trib2 (MGP_PahariEiJ_G0029381) #13	Lratd1 (MGP_PahariEiJ_G0029380) #14	Nbas (MGP_PahariEiJ_G0029379) #15	Ddx1 (MGP_PahariEiJ_G0029378) #16	Mycn (MGP_PahariEiJ_G0029377) ##17	Cyria (MGP_PahariEiJ_G0029376) #18	Rad51ap2 (MGP_PahariEiJ_G0029375) #19	Vsnl1 (MGP_PahariEiJ_G0029374) #20	Smc6 (MGP_PahariEiJ_G0029373) #21	Gen1 (MGP_PahariEiJ_G0029372) #22	Msgn1 (MGP_PahariEiJ_G0029371) #23	Kcns3 (MGP_PahariEiJ_G0029370) #24	Rdh14 (MGP_PahariEiJ_G0029369) #25	Nt5c1b (MGP_PahariEiJ_G0029368) #26	Osr1 (MGP_PahariEiJ_G0029367) #27	Ttc32 (MGP_PahariEiJ_G0029366) #28	Wdr35 (MGP_PahariEiJ_G0029365) #29	Matn3 (MGP_PahariEiJ_G0029364) #30	MGP_PahariEiJ_G0029363 #31	Sdc1 (MGP_PahariEiJ_G0029362) #32	Pum2 (MGP_PahariEiJ_G0029361) #34	Slc7a15 (MGP_PahariEiJ_G0029360) #35	Rhob (MGP_PahariEiJ_G0029359) #36	Hs1bp3 (MGP_PahariEiJ_G0029358) #37	Gdf7 (MGP_PahariEiJ_G0029357)
Rat	MODERN SPECIES	16	Greb1 (ENSRNOG00000024651) #10	Ntsr2 (ENSRNOG00000049054) #11	Lpin1 (ENSRNOG00000004377) #12	Trib2 (ENSRNOG00000004110) #13	Lratd1 (ENSRNOG00000004084) #14	Nbas (ENSRNOG00000024503) #15	Ddx1 (ENSRNOG00000006652) #16	ENSRNOG00000064235	Mycn (ENSRNOG00000051372) ##17	LOC100360357 (ENSRNOG00000065320)	Cyria (ENSRNOG00000052758) #18	AABR07072562.1 (ENSRNOG00000050653)	Rad51ap2 (ENSRNOG00000049271) #19	Vsnl1 (ENSRNOG00000005345) #20	Smc6 (ENSRNOG00000004908) #21	Gen1 (ENSRNOG00000004667) #22	Msgn1 (ENSRNOG00000028518) #23	Kcns3 (ENSRNOG00000004899) #24	Rdh14 (ENSRNOG00000039551) #25	Nt5c1b (ENSRNOG00000004296) #26	Osr1 (ENSRNOG00000004210) #27	Ttc32 (ENSRNOG00000049088) #28	Wdr35 (ENSRNOG00000028783) #29	Matn3 (ENSRNOG00000056141) #30	Laptm4a (ENSRNOG00000006865) #31	Sdc1 (ENSRNOG00000059947) #32	Pum2 (ENSRNOG00000006180) #34	Slc7a15 (ENSRNOG00000006119) #35	Hs1bp3 (ENSRNOG00000006062) #37	Gdf7 (ENSRNOG00000006046)	Ldah (ENSRNOG00000021475)
Kangaroo rat	MODERN SPECIES	339	ENSDORG00000027660	Pqlc3 (ENSDORG00000025612) #7	Rock2 (ENSDORG00000008054) #8	E2f6 (ENSDORG00000013213) #9	Greb1 (ENSDORG00000009946) #10	Lpin1 (ENSDORG00000010485) #12	Trib2 (ENSDORG00000030161) #13	Lratd1 (ENSDORG00000023584) #14	Nbas (ENSDORG00000012843) #15	Ddx1 (ENSDORG00000012847) #16	Mycn (ENSDORG00000009906) ##17	Cyria (ENSDORG00000010274) #18	ENSDORG00000026713	Vsnl1 (ENSDORG00000024043) #20	Smc6 (ENSDORG00000010753) #21	Gen1 (ENSDORG00000010754) #22	Msgn1 (ENSDORG00000003509) #23	Kcns3 (ENSDORG00000024097) #24	Rdh14 (ENSDORG00000019712) #25	Nt5c1b (ENSDORG00000012516) #26	Osr1 (ENSDORG00000000798) #27	Ttc32 (ENSDORG00000029568) #28	Wdr35 (ENSDORG00000014086) #29	Matn3 (ENSDORG00000014087) #30	Laptm4a (ENSDORG00000014089) #31	Sdc1 (ENSDORG00000014605) #32	Pum2 (ENSDORG00000011453) #34	ENSDORG00000027569 ##35	Rhob (ENSDORG00000016173) #36	Hs1bp3 (ENSDORG00000005361) #37	Gdf7 (ENSDORG00000010280)
Lagomorpha	ANCESTRAL SPECIES	75						ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Rabbit	MODERN SPECIES	11	ENSOCUG00000038693	ENSOCUG00000031382	TRIB2 (ENSOCUG00000003153) #13	ENSOCUG00000039303	LRATD1 (ENSOCUG00000002283) #14	ENSOCUG00000039105	ENSOCUG00000023292	NBAS (ENSOCUG00000015460) #15	DDX1 (ENSOCUG00000007010) #16	ENSOCUG00000037275 #17	CYRIA (ENSOCUG00000007886) #18	RAD51AP2 (ENSOCUG00000027767) #19	VSNL1 (ENSOCUG00000026184) #20	ENSOCUG00000017307	ENSOCUG00000034282 #21	GEN1 (ENSOCUG00000027255) #22	MSGN1 (ENSOCUG00000000309) #23	KCNS3 (ENSOCUG00000007365) #24	RDH14 (ENSOCUG00000025332) #25	NT5C1B (ENSOCUG00000026238) #26	OSR1 (ENSOCUG00000006091) #27	ENSOCUG00000034308	TTC32 (ENSOCUG00000003731) #28	WDR35 (ENSOCUG00000013185) #29	MATN3 (ENSOCUG00000021257) #30	LAPTM4A (ENSOCUG00000026699) #31	SDC1 (ENSOCUG00000025956) #32	ENSOCUG00000032467 #33	PUM2 (ENSOCUG00000017908) #34	ENSOCUG00000025149 #35	RHOB (ENSOCUG00000032265) #36
Primates	ANCESTRAL SPECIES	14	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745	ENSGT00390000013092 #37
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745	ENSGT00390000013092 #37
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000157219 #12	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000157219 #12	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424.a	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Hominidae	ANCESTRAL SPECIES	19	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424.a	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00390000001347.vb.a.b.b.a.a	ENSGT00910000146844.b	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00950000183424.a	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00910000147240	ENSGT00940000164653	ENSGT00910000147230
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000157219 #12	ENSGT00390000001347.vb.a.b.b.a.a	ENSGT00910000146844.b	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00910000147240	ENSGT00940000164653	ENSGT00910000147230
Pan	ANCESTRAL SPECIES	17	ENSGT00940000157219 #12	ENSGT00390000001347.vb.a.b.b.a.a	ENSGT00910000146844.b	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00910000147240	ENSGT00940000164653	ENSGT00910000147230
Chimpanzee	MODERN SPECIES	14	ENSPTRG00000047057	TRIB2 (ENSPTRG00000011666) #13	LRATD1 (ENSPTRG00000046886) #14	ENSPTRG00000052334	NBAS (ENSPTRG00000011668) #15	DDX1 (ENSPTRG00000011670) #16	MYCNOS (ENSPTRG00000042767)	MYCN (ENSPTRG00000011672) #17	ENSPTRG00000046661	CYRIA (ENSPTRG00000011673) #18	ENSPTRG00000006456	ENSPTRG00000052339	RAD51AP2 (ENSPTRG00000034119) #19	VSNL1 (ENSPTRG00000011675) #20	SMC6 (ENSPTRG00000011677) #21	GEN1 (ENSPTRG00000011678) #22	MSGN1 (ENSPTRG00000011679) #23	KCNS3 (ENSPTRG00000011680) #24	NT5C1B (ENSPTRG00000011681) #26	OSR1 (ENSPTRG00000011683) #27	ENSPTRG00000039202	ENSPTRG00000045822	TTC32 (ENSPTRG00000011685) #28	WDR35 (ENSPTRG00000011686) #29	MATN3 (ENSPTRG00000011689) #30	LAPTM4A (ENSPTRG00000011690) #31	SDC1 (ENSPTRG00000044887) #32	ENSPTRG00000043608	ENSPTRG00000050463	PUM2 (ENSPTRG00000011692) #34	RHOB (ENSPTRG00000046722) #36
Bonobo	MODERN SPECIES	14	ENSPPAG00000037510 #11	LPIN1 (ENSPPAG00000032292) #12	ENSPPAG00000012981	ENSPPAG00000028638	TRIB2 (ENSPPAG00000032342) #13	LRATD1 (ENSPPAG00000000774) #14	ENSPPAG00000015747	NBAS (ENSPPAG00000031915) #15	DDX1 (ENSPPAG00000027432) #16	ENSPPAG00000037839 #17	CYRIA (ENSPPAG00000041134) #18	ENSPPAG00000027462	RAD51AP2 (ENSPPAG00000041865) #19	VSNL1 (ENSPPAG00000032929) #20	SMC6 (ENSPPAG00000015508) #21	GEN1 (ENSPPAG00000028355) #22	MSGN1 (ENSPPAG00000033217) #23	KCNS3 (ENSPPAG00000000574) #24	ENSPPAG00000033270 #25	NT5C1B (ENSPPAG00000030956) #26	OSR1 (ENSPPAG00000032777) #27	ENSPPAG00000034662	TTC32 (ENSPPAG00000035271) #28	WDR35 (ENSPPAG00000037901) #29	MATN3 (ENSPPAG00000035472) #30	LAPTM4A (ENSPPAG00000037069) #31	SDC1 (ENSPPAG00000037638) #32	ENSPPAG00000037572	ENSPPAG00000039090	PUM2 (ENSPPAG00000023095) #34	ENSPPAG00000039825
Human	MODERN SPECIES	11	SLC66A3 (ENSG00000162976) #7	ROCK2 (ENSG00000134318) #8	E2F6 (ENSG00000169016) #9	GREB1 (ENSG00000196208) #10	NTSR2 (ENSG00000169006) #11	LPIN1 (ENSG00000134324) #12	TRIB2 (ENSG00000071575) #13	LRATD1 (ENSG00000162981) #14	NBAS (ENSG00000151779) #15	DDX1 (ENSG00000079785) #16	MYCN (ENSG00000134323) #17	CYRIA (ENSG00000197872) #18	RAD51AP2 (ENSG00000214842) #19	VSNL1 (ENSG00000163032) #20	SMC6 (ENSG00000163029) #21	GEN1 (ENSG00000178295) #22	MSGN1 (ENSG00000151379) #23	KCNS3 (ENSG00000170745) #24	RDH14 (ENSG00000240857) #25	NT5C1B-RDH14 (ENSG00000250741)	NT5C1B (ENSG00000185013) #26	OSR1 (ENSG00000143867) #27	TTC32 (ENSG00000183891) #28	WDR35 (ENSG00000118965) #29	MATN3 (ENSG00000132031) #30	LAPTM4A (ENSG00000068697) #31	SDC1 (ENSG00000115884) #32	PUM2 (ENSG00000055917) #34	RHOB (ENSG00000143878) #36	HS1BP3 (ENSG00000118960) #37	GDF7 (ENSG00000143869)
Gorilla	MODERN SPECIES	14	ENSGGOG00000043612	ENSGGOG00000043716	TRIB2 (ENSGGOG00000036149) #13	LRATD1 (ENSGGOG00000039574) #14	ENSGGOG00000040876	NBAS (ENSGGOG00000009226) #15	DDX1 (ENSGGOG00000012482) #16	ENSGGOG00000043697	ENSGGOG00000041173	MYCN (ENSGGOG00000005130) #17	FAM49A (ENSGGOG00000001230) #18	ENSGGOG00000038621	RAD51AP2 (ENSGGOG00000004887) #19	VSNL1 (ENSGGOG00000008280) #20	SMC6 (ENSGGOG00000003864) #21	GEN1 (ENSGGOG00000012157) #22	MSGN1 (ENSGGOG00000012168) #23	KCNS3 (ENSGGOG00000000972) #24	NT5C1B (ENSGGOG00000014980) #26	OSR1 (ENSGGOG00000016877) #27	ENSGGOG00000037043	TTC32 (ENSGGOG00000009777) #28	WDR35 (ENSGGOG00000009782) #29	MATN3 (ENSGGOG00000009798) #30	LAPTM4A (ENSGGOG00000027710) #31	SDC1 (ENSGGOG00000041852) #32	ENSGGOG00000027238	ENSGGOG00000040988	ENSGGOG00000037272	PUM2 (ENSGGOG00000011374) #34	RHOB (ENSGGOG00000042542) #36
Orangutan	MODERN SPECIES	14	E2F6 (ENSPPYG00000036394) #9	GREB1 (ENSPPYG00000012645) #10	NTSR2 (ENSPPYG00000012644) #11	LPIN1 (ENSPPYG00000012643) #12	TRIB2 (ENSPPYG00000038287) #13	LRATD1 (ENSPPYG00000012640) #14	ENSPPYG00000030484	NBAS (ENSPPYG00000012639) #15	DDX1 (ENSPPYG00000012638) #16	MYCN (ENSPPYG00000012635) #17	ENSPPYG00000038333	CYRIA (ENSPPYG00000012634) #18	RAD51AP2 (ENSPPYG00000012632) #19	VSNL1 (ENSPPYG00000012631) #20	SMC6 (ENSPPYG00000012630) #21	GEN1 (ENSPPYG00000012629) #22	MSGN1 (ENSPPYG00000012628) #23	KCNS3 (ENSPPYG00000012627) #24	ENSPPYG00000012626 #26	ENSPPYG00000012624 #27	ENSPPYG00000012623 #28	ENSPPYG00000036668	WDR35 (ENSPPYG00000012622) #29	MATN3 (ENSPPYG00000012621) #30	LAPTM4A (ENSPPYG00000012620) #31	SDC1 (ENSPPYG00000032047) #32	PUM2 (ENSPPYG00000012617) #34	RHOB (ENSPPYG00000012616) #36	HS1BP3 (ENSPPYG00000012615) #37	GDF7 (ENSPPYG00000035678)	LDAH (ENSPPYG00000037972)
Gibbon	MODERN SPECIES	9	GREB1 (ENSNLEG00000014178) #10	NTSR2 (ENSNLEG00000014189) #11	LPIN1 (ENSNLEG00000014196) #12	ENSNLEG00000028139	TRIB2 (ENSNLEG00000014260) #13	ENSNLEG00000014270 #14	ENSNLEG00000018294	NBAS (ENSNLEG00000014272) #15	DDX1 (ENSNLEG00000014417) #16	ENSNLEG00000014496 #17	ENSNLEG00000031164	CYRIA (ENSNLEG00000001413) #18	RAD51AP2 (ENSNLEG00000001524) #19	VSNL1 (ENSNLEG00000001537) #20	SMC6 (ENSNLEG00000001569) #21	GEN1 (ENSNLEG00000029593) #22	MSGN1 (ENSNLEG00000018810) #23	KCNS3 (ENSNLEG00000001834) #24	RDH14 (ENSNLEG00000028221) #25	NT5C1B (ENSNLEG00000001850) #26	ENSNLEG00000033627	OSR1 (ENSNLEG00000002004) #27	ENSNLEG00000028344	TTC32 (ENSNLEG00000030350) #28	WDR35 (ENSNLEG00000002032) #29	MATN3 (ENSNLEG00000002247) #30	LAPTM4A (ENSNLEG00000002305) #31	SDC1 (ENSNLEG00000031569) #32	ENSNLEG00000029549	ENSNLEG00000002506	PUM2 (ENSNLEG00000002509) #34
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00940000157219 #12	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00910000147240	ENSGT00940000153340.B.k.b	ENSGT00910000147230
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000157219 #12	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00910000148107	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT01100000264019	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00910000148107	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT01100000264019	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36
Cercopithecinae_d	ANCESTRAL SPECIES	23	ENSGT00910000148193	ENSGT00950000182986.a.b.a #13	ENSGT00910000148107	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT01100000264019	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36
Sooty mangabey	MODERN SPECIES	542	LPIN1 (ENSCATG00000039834) #12	TRIB2 (ENSCATG00000017155) #13	ENSCATG00000020884	LRATD1 (ENSCATG00000021787) #14	NBAS (ENSCATG00000042904) #15	DDX1 (ENSCATG00000033924) #16	ENSCATG00000014658	ENSCATG00000019609	MYCN (ENSCATG00000041172) #17	ENSCATG00000003592	CYRIA (ENSCATG00000004720) #18	ENSCATG00000043417	RAD51AP2 (ENSCATG00000035523) #19	VSNL1 (ENSCATG00000043748) #20	SMC6 (ENSCATG00000007538) #21	GEN1 (ENSCATG00000002261) #22	MSGN1 (ENSCATG00000020832) #23	KCNS3 (ENSCATG00000019098) #24	RDH14 (ENSCATG00000040055) #25	NT5C1B (ENSCATG00000030226) #26	OSR1 (ENSCATG00000041386) #27	ENSCATG00000035076	ENSCATG00000035517	TTC32 (ENSCATG00000043877) #28	WDR35 (ENSCATG00000043847) #29	MATN3 (ENSCATG00000038685) #30	LAPTM4A (ENSCATG00000036860) #31	SDC1 (ENSCATG00000044796) #32	ENSCATG00000041330	PUM2 (ENSCATG00000043826) #34	RHOB (ENSCATG00000021066) #36
Drill	MODERN SPECIES	273		ENSMLEG00000027447	LRATD1 (ENSMLEG00000014430) #14	NBAS (ENSMLEG00000030040) #15	DDX1 (ENSMLEG00000030787) #16	ENSMLEG00000041133	ENSMLEG00000042759	ENSMLEG00000038077	ENSMLEG00000042888 #17	ENSMLEG00000000943	CYRIA (ENSMLEG00000021733) #18	ENSMLEG00000032548	RAD51AP2 (ENSMLEG00000032822) #19	VSNL1 (ENSMLEG00000009493) #20	SMC6 (ENSMLEG00000038093) #21	GEN1 (ENSMLEG00000037009) #22	MSGN1 (ENSMLEG00000016060) #23	KCNS3 (ENSMLEG00000024480) #24	NT5C1B (ENSMLEG00000032260) #26	OSR1 (ENSMLEG00000036388) #27	ENSMLEG00000035262	TTC32 (ENSMLEG00000034466) #28	WDR35 (ENSMLEG00000042194) #29	MATN3 (ENSMLEG00000028366) #30	LAPTM4A (ENSMLEG00000011616) #31	SDC1 (ENSMLEG00000030457) #32	ENSMLEG00000041181	PUM2 (ENSMLEG00000039243) #34	RHOB (ENSMLEG00000014328) #36	HS1BP3 (ENSMLEG00000036114) #37	GDF7 (ENSMLEG00000030590)
Olive baboon	MODERN SPECIES	5	LPIN1 (ENSPANG00000009989) #12	TRIB2 (ENSPANG00000005636) #13	ENSPANG00000047167	ENSPANG00000050237	ENSPANG00000044900	LRATD1 (ENSPANG00000018765) #14	NBAS (ENSPANG00000018551) #15	DDX1 (ENSPANG00000025185) #16	ENSPANG00000032256 #17	ENSPANG00000029967	CYRIA (ENSPANG00000008636) #18	ENSPANG00000050326	RAD51AP2 (ENSPANG00000022532) #19	ENSPANG00000022533 #20	SMC6 (ENSPANG00000018608) #21	GEN1 (ENSPANG00000008635) #22	MSGN1 (ENSPANG00000004064) #23	KCNS3 (ENSPANG00000010367) #24	RDH14 (ENSPANG00000007663) #25	OSR1 (ENSPANG00000045188) #27	ENSPANG00000033126	TTC32 (ENSPANG00000015095) #28	WDR35 (ENSPANG00000019305) #29	MATN3 (ENSPANG00000019588) #30	LAPTM4A (ENSPANG00000011260) #31	ENSPANG00000033560	PUM2 (ENSPANG00000009393) #34	RHOB (ENSPANG00000016884) #36	HS1BP3 (ENSPANG00000008436) #37	GDF7 (ENSPANG00000015811)	LDAH (ENSPANG00000017330)
Macaca	ANCESTRAL SPECIES	17	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00910000148107	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000183424	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT01020000230346.C.c.a.a.b	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000154445.f.b.b	ENSGT00910000147213	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT01100000264019	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36
Pig-tailed macaque	MODERN SPECIES	561															SMC6 (ENSMNEG00000037394) #21	GEN1 (ENSMNEG00000041505) #22	MSGN1 (ENSMNEG00000009838) #23	KCNS3 (ENSMNEG00000010748) #24	RDH14 (ENSMNEG00000042523) #25	NT5C1B (ENSMNEG00000031824) #26	OSR1 (ENSMNEG00000024040) #27	ENSMNEG00000040736	ENSMNEG00000000256	TTC32 (ENSMNEG00000032654) #28	WDR35 (ENSMNEG00000043506) #29	MATN3 (ENSMNEG00000040055) #30	LAPTM4A (ENSMNEG00000030721) #31	SDC1 (ENSMNEG00000037009) #32	ENSMNEG00000031627	PUM2 (ENSMNEG00000039659) #34	RHOB (ENSMNEG00000004093) #36
Macaca_a	ANCESTRAL SPECIES	15	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000153294.m.a.d.e	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT01100000264019	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092.c #37	ENSGT00940000160140.b	ENSGT00390000009688
Rhesus	MODERN SPECIES	4	NTSR2 (ENSMMUG00000020250) #11	LPIN1 (ENSMMUG00000021672) #12	ENSMMUG00000062508	TRIB2 (ENSMMUG00000038615) #13	ENSMMUG00000060624	ENSMMUG00000059746	LRATD1 (ENSMMUG00000004215) #14	NBAS (ENSMMUG00000023434) #15	DDX1 (ENSMMUG00000023437) #16	ENSMMUG00000052644	MYCN (ENSMMUG00000052363) #17	CYRIA (ENSMMUG00000020385) #18	RAD51AP2 (ENSMMUG00000058011) #19	VSNL1 (ENSMMUG00000040529) #20	SMC6 (ENSMMUG00000012056) #21	GEN1 (ENSMMUG00000012058) #22	MSGN1 (ENSMMUG00000008141) #23	KCNS3 (ENSMMUG00000017198) #24	NT5C1B (ENSMMUG00000014083) #26	OSR1 (ENSMMUG00000037622) #27	ENSMMUG00000056023	TTC32 (ENSMMUG00000001570) #28	WDR35 (ENSMMUG00000001575) #29	MATN3 (ENSMMUG00000001579) #30	LAPTM4A (ENSMMUG00000001582) #31	SDC1 (ENSMMUG00000030922) #32	ENSMMUG00000052718	PUM2 (ENSMMUG00000023181) #34	HS1BP3 (ENSMMUG00000022996) #37	GDF7 (ENSMMUG00000050446)	ENSMMUG00000055950
Crab-eating macaque	MODERN SPECIES	4	ENSMFAG00000044386 #10	NTSR2 (ENSMFAG00000043071) #11	ENSMFAG00000064291	LPIN1 (ENSMFAG00000035872) #12	TRIB2 (ENSMFAG00000042686) #13	ENSMFAG00000047890	LRATD1 (ENSMFAG00000027588) #14	NBAS (ENSMFAG00000003823) #15	DDX1 (ENSMFAG00000033987) #16	ENSMFAG00000052602	MYCN (ENSMFAG00000032784) #17	CYRIA (ENSMFAG00000030486) #18	RAD51AP2 (ENSMFAG00000002803) #19	VSNL1 (ENSMFAG00000063922) #20	SMC6 (ENSMFAG00000033284) #21	GEN1 (ENSMFAG00000002080) #22	MSGN1 (ENSMFAG00000007491) #23	KCNS3 (ENSMFAG00000007411) #24	NT5C1B (ENSMFAG00000002988) #26	ENSMFAG00000064231	ENSMFAG00000051219	ENSMFAG00000065687	ENSMFAG00000059615	OSR1 (ENSMFAG00000039189) #27	TTC32 (ENSMFAG00000040343) #28	WDR35 (ENSMFAG00000034406) #29	MATN3 (ENSMFAG00000043379) #30	ENSMFAG00000049571	LAPTM4A (ENSMFAG00000036772) #31	ENSMFAG00000064406 #32	ENSMFAG00000043647
Vervet Monkey	MODERN SPECIES	5	E2F6 (ENSCSAG00000007487) #9	ENSCSAG00000007494 #10	ENSCSAG00000007503 #10	NTSR2 (ENSCSAG00000007519) #11	LPIN1 (ENSCSAG00000007534) #12	TRIB2 (ENSCSAG00000007539) #13	LRATD1 (ENSCSAG00000000375) #14	ENSCSAG00000000376	NBAS (ENSCSAG00000007763) #15	DDX1 (ENSCSAG00000007883) #16	MYCN (ENSCSAG00000007889) #17	CYRIA (ENSCSAG00000007902) #18	RAD51AP2 (ENSCSAG00000007907) #19	VSNL1 (ENSCSAG00000007914) #20	SMC6 (ENSCSAG00000007925) #21	GEN1 (ENSCSAG00000007952) #22	MSGN1 (ENSCSAG00000000377) #23	KCNS3 (ENSCSAG00000000378) #24	RDH14 (ENSCSAG00000007969) #25	NT5C1B (ENSCSAG00000007999) #26	OSR1 (ENSCSAG00000008012) #27	TTC32 (ENSCSAG00000008028) #28	WDR35 (ENSCSAG00000008051) #29	MATN3 (ENSCSAG00000008064) #30	LAPTM4A (ENSCSAG00000008071) #31	SDC1 (ENSCSAG00000008077) #32	PUM2 (ENSCSAG00000008087) #34	RHOB (ENSCSAG00000000379) #36	HS1BP3 (ENSCSAG00000008096) #37	GDF7 (ENSCSAG00000008108)	LDAH (ENSCSAG00000008123)
Rhinopithecus	ANCESTRAL SPECIES	327				ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000012474 #15	ENSGT00940000154958.lb.a	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26
Golden snub-nosed monkey	MODERN SPECIES	2966													RAD51AP2 (ENSRROG00000039994) #19	VSNL1 (ENSRROG00000045059) #20	SMC6 (ENSRROG00000021603) #21	GEN1 (ENSRROG00000031604) #22	MSGN1 (ENSRROG00000028305) #23	KCNS3 (ENSRROG00000006598) #24
Black snub-nosed monkey	MODERN SPECIES	374					LRATD1 (ENSRBIG00000004537) #14	ENSRBIG00000000433	NBAS (ENSRBIG00000040798) #15	ENSRBIG00000039266	DDX1 (ENSRBIG00000041664) #16	MYCN (ENSRBIG00000031158) #17	ENSRBIG00000016916	CYRIA (ENSRBIG00000037805) #18	RAD51AP2 (ENSRBIG00000041339) #19	VSNL1 (ENSRBIG00000043244) #20	SMC6 (ENSRBIG00000032057) #21	GEN1 (ENSRBIG00000034123) #22	MSGN1 (ENSRBIG00000031141) #23	KCNS3 (ENSRBIG00000031172) #24	RDH14 (ENSRBIG00000031223) #25	NT5C1B (ENSRBIG00000035028) #26	DLG5 (ENSRBIG00000030077)	ENSRBIG00000035661	ENSRBIG00000041134	KCNMA1 (ENSRBIG00000045005)	ENSRBIG00000036747
Platyrrhini	ANCESTRAL SPECIES	45	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905.n.a #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745	ENSGT00390000013092 #37
Cebidae	ANCESTRAL SPECIES	40	ENSGT00940000153916.B.f #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905.n.a #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745	ENSGT00390000013092 #37	ENSGT00940000160140.b
Cebidae_a	ANCESTRAL SPECIES	46	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00770000121715	ENSGT00390000003897.s.b.a.b.a.a	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905.n.a #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00900000143745	ENSGT00390000013092 #37	ENSGT00940000160140.b
Capuchin	MODERN SPECIES	1	NTSR2 (ENSCCAG00000036768) #11	LPIN1 (ENSCCAG00000030095) #12	TRIB2 (ENSCCAG00000013010) #13	LRATD1 (ENSCCAG00000019002) #14	ENSCCAG00000024507	NBAS (ENSCCAG00000028087) #15	DDX1 (ENSCCAG00000030085) #16	ENSCCAG00000032936	ENSCCAG00000033245	MYCN (ENSCCAG00000036405) #17	CYRIA (ENSCCAG00000019373) #18	ENSCCAG00000027131	RAD51AP2 (ENSCCAG00000024012) #19	VSNL1 (ENSCCAG00000027421) #20	SMC6 (ENSCCAG00000027451) #21	GEN1 (ENSCCAG00000031121) #22	MSGN1 (ENSCCAG00000020077) #23	KCNS3 (ENSCCAG00000020195) #24	RDH14 (ENSCCAG00000027491) #25	NT5C1B (ENSCCAG00000020565) #26	OSR1 (ENSCCAG00000029161) #27	TTC32 (ENSCCAG00000025284) #28	WDR35 (ENSCCAG00000030486) #29	MATN3 (ENSCCAG00000033118) #30	LAPTM4A (ENSCCAG00000029231) #31	ENSCCAG00000019764	SDC1 (ENSCCAG00000031573) #32	PUM2 (ENSCCAG00000037035) #34	RHOB (ENSCCAG00000018485) #36	HS1BP3 (ENSCCAG00000028038) #37	GDF7 (ENSCCAG00000035529)
Bolivian squirrel monkey	MODERN SPECIES	113									NBAS (ENSSBOG00000030791) #15	DDX1 (ENSSBOG00000027577) #16	MYCN (ENSSBOG00000027501) #17	CYRIA (ENSSBOG00000025029) #18	RAD51AP2 (ENSSBOG00000028552) #19	VSNL1 (ENSSBOG00000029668) #20	SMC6 (ENSSBOG00000020240) #21	GEN1 (ENSSBOG00000031046) #22	MSGN1 (ENSSBOG00000010657) #23	KCNS3 (ENSSBOG00000010067) #24	RDH14 (ENSSBOG00000028443) #25	NT5C1B (ENSSBOG00000030055) #26	ENSSBOG00000023931	OSR1 (ENSSBOG00000023175) #27	TTC32 (ENSSBOG00000024543) #28	WDR35 (ENSSBOG00000030509) #29	MATN3 (ENSSBOG00000027840) #30	LAPTM4A (ENSSBOG00000031549) #31	ENSSBOG00000029288 #32	PUM2 (ENSSBOG00000022007) #34	RHOB (ENSSBOG00000013056) #36	ENSSBOG00000032320	HS1BP3 (ENSSBOG00000023433) #37
Marmoset	MODERN SPECIES	5	E2F6 (ENSCJAG00000006910) #9	GREB1 (ENSCJAG00000006946) #10	NTSR2 (ENSCJAG00000006958) #11	LPIN1 (ENSCJAG00000006976) #12	ENSCJAG00000021005	TRIB2 (ENSCJAG00000046267) #13	LRATD1 (ENSCJAG00000046159) #14	NBAS (ENSCJAG00000007028) #15	DDX1 (ENSCJAG00000007076) #16	ENSCJAG00000064948	MYCN (ENSCJAG00000039364) #17	CYRIA (ENSCJAG00000043048) #18	RAD51AP2 (ENSCJAG00000007262) #19	VSNL1 (ENSCJAG00000002578) #20	SMC6 (ENSCJAG00000007282) #21	GEN1 (ENSCJAG00000007327) #22	MSGN1 (ENSCJAG00000032633) #23	KCNS3 (ENSCJAG00000007354) #24	NT5C1B (ENSCJAG00000007361) #26	ENSCJAG00000022933	ENSCJAG00000083040	OSR1 (ENSCJAG00000007379) #27	TTC32 (ENSCJAG00000065690) #28	WDR35 (ENSCJAG00000007386) #29	MATN3 (ENSCJAG00000007406) #30	ENSCJAG00000071467 #31	SDC1 (ENSCJAG00000039283) #32	PUM2 (ENSCJAG00000007450) #34	ENSCJAG00000086921	RHOB (ENSCJAG00000077207) #36	ENSCJAG00000022935
Mas night monkey	MODERN SPECIES	1339	LPIN1 (ENSANAG00000028949) #12	ENSANAG00000006352	TRIB2 (ENSANAG00000029484) #13	ENSANAG00000027894	LRATD1 (ENSANAG00000010804) #14	ENSANAG00000034033	ENSANAG00000026719	NBAS (ENSANAG00000021700) #15	DDX1 (ENSANAG00000037912) #16	ENSANAG00000027938	MYCN (ENSANAG00000027525) #17	CYRIA (ENSANAG00000031083) #18	RAD51AP2 (ENSANAG00000027176) #19	VSNL1 (ENSANAG00000033429) #20	SMC6 (ENSANAG00000032320) #21	GEN1 (ENSANAG00000029921) #22	MSGN1 (ENSANAG00000002932) #23	KCNS3 (ENSANAG00000001463) #24
Tarsier	MODERN SPECIES	4281													RAD51AP2 (ENSTSYG00000003638) #19	VSNL1 (ENSTSYG00000035386) #20	SMC6 (ENSTSYG00000007471) #21	GEN1 (ENSTSYG00000003676) #22
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Lemuriformes	ANCESTRAL SPECIES	23	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Lemuriformes_a	ANCESTRAL SPECIES	10	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00950000183424	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Greater bamboo lemur	MODERN SPECIES	339	E2F6 (ENSPSMG00000008847) #9	GREB1 (ENSPSMG00000008813) #10	NTSR2 (ENSPSMG00000008712) #11	LPIN1 (ENSPSMG00000008652) #12	TRIB2 (ENSPSMG00000008501) #13	LRATD1 (ENSPSMG00000008472) #14	NBAS (ENSPSMG00000008335) #15	DDX1 (ENSPSMG00000007970) #16	ENSPSMG00000007742 #17	ENSPSMG00000007732	CYRIA (ENSPSMG00000007716) #18	ENSPSMG00000007660	RAD51AP2 (ENSPSMG00000007652) #19	VSNL1 (ENSPSMG00000007643) #20	SMC6 (ENSPSMG00000007622) #21	GEN1 (ENSPSMG00000007525) #22	MSGN1 (ENSPSMG00000007507) #23	KCNS3 (ENSPSMG00000007502) #24	RDH14 (ENSPSMG00000007468) #25	NT5C1B (ENSPSMG00000007455) #26	OSR1 (ENSPSMG00000007427) #27	TTC32 (ENSPSMG00000007425) #28	WDR35 (ENSPSMG00000007386) #29	MATN3 (ENSPSMG00000007217) #30	LAPTM4A (ENSPSMG00000007179) #31	SDC1 (ENSPSMG00000007157) #32	PUM2 (ENSPSMG00000007064) #34	ENSPSMG00000006929	HS1BP3 (ENSPSMG00000006908) #37	GDF7 (ENSPSMG00000006880)	ENSPSMG00000006877
Coquerels sifaka	MODERN SPECIES	559								LRATD1 (ENSPCOG00000007737) #14	NBAS (ENSPCOG00000021921) #15	DDX1 (ENSPCOG00000028185) #16	MYCN (ENSPCOG00000013382) #17	CYRIA (ENSPCOG00000021268) #18	RAD51AP2 (ENSPCOG00000019163) #19	VSNL1 (ENSPCOG00000003780) #20	SMC6 (ENSPCOG00000028541) #21	GEN1 (ENSPCOG00000022405) #22	KCNS3 (ENSPCOG00000009392) #24	RDH14 (ENSPCOG00000023642) #25	NT5C1B (ENSPCOG00000000264) #26	OSR1 (ENSPCOG00000024991) #27	ENSPCOG00000015877	TTC32 (ENSPCOG00000028173) #28	MATN3 (ENSPCOG00000020678) #30	LAPTM4A (ENSPCOG00000019008) #31	SDC1 (ENSPCOG00000024117) #32	PUM2 (ENSPCOG00000019636) #34	RHOB (ENSPCOG00000004927) #36	HS1BP3 (ENSPCOG00000016428) #37	GDF7 (ENSPCOG00000020938)	LDAH (ENSPCOG00000014577)	APOB (ENSPCOG00000021611)
Mouse lemur	MODERN SPECIES	30	ENSMICG00000028029	E2F6 (ENSMICG00000017705) #9	GREB1 (ENSMICG00000017707) #10	NTSR2 (ENSMICG00000017708) #11	LPIN1 (ENSMICG00000017709) #12	TRIB2 (ENSMICG00000031869) #13	LRATD1 (ENSMICG00000042880) #14	ENSMICG00000036925	NBAS (ENSMICG00000001009) #15	DDX1 (ENSMICG00000001023) #16	MYCN (ENSMICG00000013903) #17	CYRIA (ENSMICG00000013924) #18	RAD51AP2 (ENSMICG00000038023) #19	VSNL1 (ENSMICG00000036354) #20	SMC6 (ENSMICG00000010802) #21	GEN1 (ENSMICG00000026479) #22	ENSMICG00000029479 #24	RDH14 (ENSMICG00000033814) #25	NT5C1B (ENSMICG00000010847) #26	OSR1 (ENSMICG00000004493) #27	ENSMICG00000041804 #28	WDR35 (ENSMICG00000037969) #29	MATN3 (ENSMICG00000032185) #30	LAPTM4A (ENSMICG00000031395) #31	SDC1 (ENSMICG00000041634) #32	PUM2 (ENSMICG00000011647) #34	RHOB (ENSMICG00000029771) #36	HS1BP3 (ENSMICG00000027064) #37	GDF7 (ENSMICG00000044629)	LDAH (ENSMICG00000011319)	APOB (ENSMICG00000011331)
Bushbaby	MODERN SPECIES	137	ROCK2 (ENSOGAG00000009767) #8	ENSOGAG00000024515	E2F6 (ENSOGAG00000013601) #9	GREB1 (ENSOGAG00000013608) #10	NTSR2 (ENSOGAG00000013618) #11	LPIN1 (ENSOGAG00000013620) #12	TRIB2 (ENSOGAG00000002490) #13	LRATD1 (ENSOGAG00000032892) #14	NBAS (ENSOGAG00000008723) #15	DDX1 (ENSOGAG00000008730) #16	MYCN (ENSOGAG00000010927) #17	CYRIA (ENSOGAG00000009218) #18	ENSOGAG00000031508	VSNL1 (ENSOGAG00000030574) #20	SMC6 (ENSOGAG00000004809) #21	GEN1 (ENSOGAG00000004816) #22	MSGN1 (ENSOGAG00000012569) #23	KCNS3 (ENSOGAG00000007336) #24	RDH14 (ENSOGAG00000027061) #25	NT5C1B (ENSOGAG00000001728) #26	OSR1 (ENSOGAG00000003047) #27	TTC32 (ENSOGAG00000002990) #28	WDR35 (ENSOGAG00000002991) #29	MATN3 (ENSOGAG00000002995) #30	ENSOGAG00000029374	LAPTM4A (ENSOGAG00000003002) #31	SDC1 (ENSOGAG00000010183) #32	PUM2 (ENSOGAG00000002187) #34	RHOB (ENSOGAG00000034489) #36	HS1BP3 (ENSOGAG00000000192) #37	GDF7 (ENSOGAG00000025229)
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Microbat	MODERN SPECIES	1102						TRIB2 (ENSMLUG00000003079) #13	ENSMLUG00000025107	LRATD1 (ENSMLUG00000010312) #14	NBAS (ENSMLUG00000002994) #15	DDX1 (ENSMLUG00000003027) #16	ENSMLUG00000006738	ENSMLUG00000026821 #17	CYRIA (ENSMLUG00000001745) #18	VSNL1 (ENSMLUG00000023070) #20	SMC6 (ENSMLUG00000014744) #21	GEN1 (ENSMLUG00000007576) #22	MSGN1 (ENSMLUG00000007599) #23	KCNS3 (ENSMLUG00000005107) #24
Greater horseshoe bat	MODERN SPECIES	4	SLC66A3 (ENSRFEG00010008070) #7	ROCK2 (ENSRFEG00010007837) #8	E2F6 (ENSRFEG00010007627) #9	GREB1 (ENSRFEG00010007141) #10	LPIN1 (ENSRFEG00010006930) #12	TRIB2 (ENSRFEG00010006836) #13	ENSRFEG00010006807	LRATD1 (ENSRFEG00010006783) #14	NBAS (ENSRFEG00010006665) #15	DDX1 (ENSRFEG00010006410) #16	MYCN (ENSRFEG00010006325) #17	CYRIA (ENSRFEG00010006289) #18	RAD51AP2 (ENSRFEG00010006267) #19	VSNL1 (ENSRFEG00010006243) #20	SMC6 (ENSRFEG00010006174) #21	GEN1 (ENSRFEG00010006120) #22	MSGN1 (ENSRFEG00010006094) #23	KCNS3 (ENSRFEG00010006076) #24	RDH14 (ENSRFEG00010006059) #25	NT5C1B (ENSRFEG00010006003) #26	OSR1 (ENSRFEG00010005966) #27	TTC32 (ENSRFEG00010005945) #28	WDR35 (ENSRFEG00010005857) #29	MATN3 (ENSRFEG00010005757) #30	LAPTM4A (ENSRFEG00010005720) #31	SDC1 (ENSRFEG00010005688) #32	ENSRFEG00010005671 #33	PUM2 (ENSRFEG00010005562) #34	RHOB (ENSRFEG00010005478) #36	HS1BP3 (ENSRFEG00010005461) #37	GDF7 (ENSRFEG00010005440)
Megabat	MODERN SPECIES	3356													RAD51AP2 (ENSPVAG00000015657) #19	VSNL1 (ENSPVAG00000015658) #20	SMC6 (ENSPVAG00000015659) #21	GEN1 (ENSPVAG00000015665) #22	MSGN1 (ENSPVAG00000015666) #23	KCNS3 (ENSPVAG00000015667) #24
Equus	ANCESTRAL SPECIES	7	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT01090000263232	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00910000146982	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT01090000263317.a	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Horse	MODERN SPECIES	6	LPIN1 (ENSECAG00000011239) #12	TRIB2 (ENSECAG00000010405) #13	ENSECAG00000050817	ENSECAG00000038530	ENSECAG00000007860	LRATD1 (ENSECAG00000027835) #14	NBAS (ENSECAG00000016641) #15	DDX1 (ENSECAG00000016396) #16	ENSECAG00000037590	MYCN (ENSECAG00000002896) #17	ENSECAG00000018361	CYRIA (ENSECAG00000014952) #18	RAD51AP2 (ENSECAG00000014706) #19	VSNL1 (ENSECAG00000013682) #20	SMC6 (ENSECAG00000022265) #21	GEN1 (ENSECAG00000020295) #22	MSGN1 (ENSECAG00000002724) #23	KCNS3 (ENSECAG00000019779) #24	RDH14 (ENSECAG00000045905) #25	NT5C1B (ENSECAG00000014033) #26	OSR1 (ENSECAG00000013593) #27	TTC32 (ENSECAG00000013048) #28	WDR35 (ENSECAG00000018258) #29	MATN3 (ENSECAG00000017085) #30	SDC1 (ENSECAG00000014709) #32	ENSECAG00000045674	PUM2 (ENSECAG00000021930) #34	ENSECAG00000021922 #35	ENSECAG00000032315	RHOB (ENSECAG00000051165) #36	HS1BP3 (ENSECAG00000021502) #37
Donkey	MODERN SPECIES	26	ROCK2 (ENSEASG00005005236) #8	E2F6 (ENSEASG00005008212) #9	GREB1 (ENSEASG00005008223) #10	NTSR2 (ENSEASG00005008238) #11	LPIN1 (ENSEASG00005008245) #12	TRIB2 (ENSEASG00005008257) #13	ENSEASG00005008260	LRATD1 (ENSEASG00005026394) #14	NBAS (ENSEASG00005008385) #15	DDX1 (ENSEASG00005009335) #16	MYCN (ENSEASG00005037158) #17	CYRIA (ENSEASG00005009344) #18	RAD51AP2 (ENSEASG00005009350) #19	VSNL1 (ENSEASG00005026430) #20	SMC6 (ENSEASG00005009355) #21	GEN1 (ENSEASG00005023619) #22	MSGN1 (ENSEASG00005009364) #23	KCNS3 (ENSEASG00005009368) #24	RDH14 (ENSEASG00005029880) #25	NT5C1B (ENSEASG00005009376) #26	OSR1 (ENSEASG00005009388) #27	TTC32 (ENSEASG00005026368) #28	WDR35 (ENSEASG00005009400) #29	MATN3 (ENSEASG00005009408) #30	LAPTM4A (ENSEASG00005009414) #31	SDC1 (ENSEASG00005009418) #32	PUM2 (ENSEASG00005009429) #34	ENSEASG00005009442 #35	ENSEASG00005027331	RHOB (ENSEASG00005009448) #36	HS1BP3 (ENSEASG00005009454) #37
Carnivora	ANCESTRAL SPECIES	19	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Caniformia	ANCESTRAL SPECIES	18	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Ursidae	ANCESTRAL SPECIES	9	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b.f #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Ursus	ANCESTRAL SPECIES	27						ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b.f #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Polar bear	MODERN SPECIES	223							NBAS (ENSUMAG00000023486) #15	DDX1 (ENSUMAG00000023450) #16	ENSUMAG00000023445	ENSUMAG00000023442 #17	ENSUMAG00000023440	CYRIA (ENSUMAG00000023433) #18	RAD51AP2 (ENSUMAG00000023423) #19	VSNL1 (ENSUMAG00000023419) #20	SMC6 (ENSUMAG00000023406) #21	GEN1 (ENSUMAG00000023394) #22	MSGN1 (ENSUMAG00000023391) #23	KCNS3 (ENSUMAG00000023389) #24	RDH14 (ENSUMAG00000023381) #25	NT5C1B (ENSUMAG00000023377) #26	OSR1 (ENSUMAG00000023373) #27	TTC32 (ENSUMAG00000023371) #28	WDR35 (ENSUMAG00000023232) #29	MATN3 (ENSUMAG00000023214) #30	LAPTM4A (ENSUMAG00000023207) #31	ENSUMAG00000023205 #32	ENSUMAG00000023203 #33	PUM2 (ENSUMAG00000023198) #34	ENSUMAG00000023094 #35	ENSUMAG00000023070 #37	LDAH (ENSUMAG00000023067)
American black bear	MODERN SPECIES	1335														ENSUAMG00000001939	ENSUAMG00000001936	ENSUAMG00000001929 #22	MSGN1 (ENSUAMG00000001925) #23	KCNS3 (ENSUAMG00000001922) #24
Giant Panda	MODERN SPECIES	14	LPIN1 (ENSAMEG00000012767) #12	TRIB2 (ENSAMEG00000012759) #13	ENSAMEG00000024142	LRATD1 (ENSAMEG00000028918) #14	ENSAMEG00000030828	NBAS (ENSAMEG00000010210) #15	DDX1 (ENSAMEG00000001071) #16	ENSAMEG00000029970	ENSAMEG00000001062 #17	ENSAMEG00000023555	CYRIA (ENSAMEG00000001040) #18	ENSAMEG00000002627	RAD51AP2 (ENSAMEG00000002644) #19	VSNL1 (ENSAMEG00000011624) #20	SMC6 (ENSAMEG00000002654) #21	GEN1 (ENSAMEG00000002666) #22	MSGN1 (ENSAMEG00000019874) #23	KCNS3 (ENSAMEG00000019878) #24	NT5C1B (ENSAMEG00000002686) #26	OSR1 (ENSAMEG00000002708) #27	TTC32 (ENSAMEG00000002717) #28	WDR35 (ENSAMEG00000002724) #29	MATN3 (ENSAMEG00000002771) #30	LAPTM4A (ENSAMEG00000002787) #31	SDC1 (ENSAMEG00000002804) #32	ENSAMEG00000025209 #33	PUM2 (ENSAMEG00000002823) #34	ENSAMEG00000002884 #35	RHOB (ENSAMEG00000019884) #36	ENSAMEG00000025415 #37	ENSAMEG00000002904
Mustelinae	ANCESTRAL SPECIES	55	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
American mink	MODERN SPECIES	7	ROCK2 (ENSNVIG00000014361) #8	E2F6 (ENSNVIG00000014248) #9	GREB1 (ENSNVIG00000014163) #10	NTSR2 (ENSNVIG00000014146) #11	LPIN1 (ENSNVIG00000014063) #12	TRIB2 (ENSNVIG00000014034) #13	LRATD1 (ENSNVIG00000014024) #14	NBAS (ENSNVIG00000013960) #15	DDX1 (ENSNVIG00000013794) #16	ENSNVIG00000013771	MYCN (ENSNVIG00000013755) #17	CYRIA (ENSNVIG00000013712) #18	RAD51AP2 (ENSNVIG00000013682) #19	VSNL1 (ENSNVIG00000013664) #20	ENSNVIG00000013543	GEN1 (ENSNVIG00000013515) #22	MSGN1 (ENSNVIG00000013513) #23	ENSNVIG00000013510	KCNS3 (ENSNVIG00000013506) #24	RDH14 (ENSNVIG00000013495) #25	NT5C1B (ENSNVIG00000013468) #26	ENSNVIG00000013455	OSR1 (ENSNVIG00000013439) #27	TTC32 (ENSNVIG00000013413) #28	WDR35 (ENSNVIG00000013269) #29	MATN3 (ENSNVIG00000013221) #30	LAPTM4A (ENSNVIG00000013199) #31	SDC1 (ENSNVIG00000013190) #32	ENSNVIG00000013188 #33	ENSNVIG00000013176	PUM2 (ENSNVIG00000013016) #34
Ferret	MODERN SPECIES	178	LPIN1 (ENSMPUG00000013577) #12	TRIB2 (ENSMPUG00000013582) #13	ENSMPUG00000019482	LRATD1 (ENSMPUG00000019483) #14	ENSMPUG00000013584	ENSMPUG00000013586	NBAS (ENSMPUG00000013588) #15	DDX1 (ENSMPUG00000013606) #16	ENSMPUG00000013620 #17	ENSMPUG00000013621	CYRIA (ENSMPUG00000013624) #18	ENSMPUG00000013627	RAD51AP2 (ENSMPUG00000013634) #19	VSNL1 (ENSMPUG00000013641) #20	SMC6 (ENSMPUG00000013644) #21	GEN1 (ENSMPUG00000013651) #22	MSGN1 (ENSMPUG00000019484) #23	KCNS3 (ENSMPUG00000019486) #24	RDH14 (ENSMPUG00000013659) #25	NT5C1B (ENSMPUG00000013662) #26	OSR1 (ENSMPUG00000013697) #27	TTC32 (ENSMPUG00000013701) #28	WDR35 (ENSMPUG00000013708) #29	MATN3 (ENSMPUG00000013713) #30	LAPTM4A (ENSMPUG00000013714) #31	SDC1 (ENSMPUG00000013732) #32	PUM2 (ENSMPUG00000013734) #34	ENSMPUG00000013736 #35	RHOB (ENSMPUG00000019487) #36	HS1BP3 (ENSMPUG00000013739) #37	GDF7 (ENSMPUG00000013742)
Canidae	ANCESTRAL SPECIES	46	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000154502.u.b	ENSGT00950000185177	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00980000202730	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000154502.u.b	ENSGT00950000185177	ENSGT00950000185147	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00980000202468	ENSGT00980000202730	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35
Dingo	DUPLICATION
Dingo	MODERN SPECIES	223	LPIN1 (ENSCAFG00020026371) #12	TRIB2 (ENSCAFG00020026310) #13	LRATD1 (ENSCAFG00020026306) #14	NBAS (ENSCAFG00020026147) #15	DDX1 (ENSCAFG00020026083) #16	ENSCAFG00020026077	ENSCAFG00020026076	ENSCAFG00020026073	MYCN (ENSCAFG00020026072) #17	CYRIA (ENSCAFG00020026065) #18	RAD51AP2 (ENSCAFG00020026058) #19	VSNL1 (ENSCAFG00020026051) #20	ENSCAFG00020026047	ENSCAFG00020026046	ENSCAFG00020026045 #22	ENSCAFG00020026044 #22	MSGN1 (ENSCAFG00020026040) #23	KCNS3 (ENSCAFG00020026039) #24	ENSCAFG00020026037	RDH14 (ENSCAFG00020026035) #25	NT5C1B (ENSCAFG00020026028) #26	OSR1 (ENSCAFG00020026025) #27	TTC32 (ENSCAFG00020026024) #28	WDR35 (ENSCAFG00020025847) #29	LAPTM4A (ENSCAFG00020025761) #31	SDC1 (ENSCAFG00020025760) #32	ENSCAFG00020025758 #33	PUM2 (ENSCAFG00020025689) #34	ENSCAFG00020025683 #35	ENSCAFG00020025680 ##35	RHOB (ENSCAFG00020025677) #36
Dingo	MODERN SPECIES	223	NTSR2 (ENSCAFG00020026550) #11	LPIN1 (ENSCAFG00020026371) #12	TRIB2 (ENSCAFG00020026310) #13	LRATD1 (ENSCAFG00020026306) #14	NBAS (ENSCAFG00020026147) #15	DDX1 (ENSCAFG00020026083) #16	ENSCAFG00020026077	ENSCAFG00020026076	ENSCAFG00020026073	MYCN (ENSCAFG00020026072) #17	CYRIA (ENSCAFG00020026065) #18	RAD51AP2 (ENSCAFG00020026058) #19	VSNL1 (ENSCAFG00020026051) #20	ENSCAFG00020026047	ENSCAFG00020026046	ENSCAFG00020026045 #22	ENSCAFG00020026044 #22	MSGN1 (ENSCAFG00020026040) #23	KCNS3 (ENSCAFG00020026039) #24	ENSCAFG00020026037	RDH14 (ENSCAFG00020026035) #25	NT5C1B (ENSCAFG00020026028) #26	OSR1 (ENSCAFG00020026025) #27	TTC32 (ENSCAFG00020026024) #28	WDR35 (ENSCAFG00020025847) #29	LAPTM4A (ENSCAFG00020025761) #31	SDC1 (ENSCAFG00020025760) #32	ENSCAFG00020025758 #33	PUM2 (ENSCAFG00020025689) #34	ENSCAFG00020025683 #35	ENSCAFG00020025680 ##35
Dog	MODERN SPECIES	8	GREB1 (ENSCAFG00845028242) #10	NTSR2 (ENSCAFG00845028451) #11	LPIN1 (ENSCAFG00845028736) #12	TRIB2 (ENSCAFG00845029138) #13	ENSCAFG00845029183	LRATD1 (ENSCAFG00845029228) #14	NBAS (ENSCAFG00845029355) #15	DDX1 (ENSCAFG00845015852) #16	ENSCAFG00845016086	ENSCAFG00845016099	MYCN (ENSCAFG00845016124) #17	CYRIA (ENSCAFG00845016166) #18	RAD51AP2 (ENSCAFG00845016237) #19	VSNL1 (ENSCAFG00845016286) #20	SMC6 (ENSCAFG00845016537) #21	GEN1 (ENSCAFG00845017081) #22	MSGN1 (ENSCAFG00845017161) #23	KCNS3 (ENSCAFG00845017227) #24	ENSCAFG00845017269	ENSCAFG00845017291	NT5C1B (ENSCAFG00845017330) #25	NT5C1B (ENSCAFG00845017369) #26	OSR1 (ENSCAFG00845017551) #27	TTC32 (ENSCAFG00845017602) #28	WDR35 (ENSCAFG00845017734) #29	MATN3 (ENSCAFG00845018475) #30	MATN3 (ENSCAFG00845018598) #31	SDC1 (ENSCAFG00845018675) #32	PUM2 (ENSCAFG00845018880) #34	ENSCAFG00845019715 #35	RHOB (ENSCAFG00845019784) #36
Red fox	MODERN SPECIES	107						NBAS (ENSVVUG00000011071) #15	DDX1 (ENSVVUG00000013085) #16	ENSVVUG00000013119	MYCN (ENSVVUG00000013125) #17	ENSVVUG00000013139	FAM49A (ENSVVUG00000013163) #18	ENSVVUG00000013219	RAD51AP2 (ENSVVUG00000013222) #19	VSNL1 (ENSVVUG00000013234) #20	SMC6 (ENSVVUG00000013308) #21	GEN1 (ENSVVUG00000014785) #22	MSGN1 (ENSVVUG00000014790) #23	KCNS3 (ENSVVUG00000014792) #24	ENSVVUG00000014794	RDH14 (ENSVVUG00000014797) #25	NT5C1B (ENSVVUG00000014799) #26	OSR1 (ENSVVUG00000014812) #27	ENSVVUG00000014817 #28	WDR35 (ENSVVUG00000014818) #29	MATN3 (ENSVVUG00000014820) #30	LAPTM4A (ENSVVUG00000014821) #31	SDC1 (ENSVVUG00000014823) #32	ENSVVUG00000014826 #33	PUM2 (ENSVVUG00000014829) #34	ENSVVUG00000014837 #35	ENSVVUG00000014838 #35
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000169919	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b.c #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000169919	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b.c #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b.l #36	ENSGT00950000182945.b.a.a.b.b.b.k.a #36
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000169919	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b.c #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b.l #36	ENSGT00950000182945.b.a.a.b.b.b.k.a #36
lion	MODERN SPECIES	3	ROCK2 (ENSPLOG00000003439) #8	E2F6 (ENSPLOG00000003470) #9	GREB1 (ENSPLOG00000003614) #10	ENSPLOG00000003731	LPIN1 (ENSPLOG00000003864) #12	TRIB2 (ENSPLOG00000003954) #13	LRATD1 (ENSPLOG00000003961) #14	NBAS (ENSPLOG00000004024) #15	DDX1 (ENSPLOG00000004218) #16	MYCN (ENSPLOG00000004251) #17	ENSPLOG00000004254	CYRIA (ENSPLOG00000004262) #18	RAD51AP2 (ENSPLOG00000004282) #19	VSNL1 (ENSPLOG00000004292) #20	SMC6 (ENSPLOG00000004301) #21	GEN1 (ENSPLOG00000004334) #22	MSGN1 (ENSPLOG00000004343) #23	KCNS3 (ENSPLOG00000004351) #24	RDH14 (ENSPLOG00000004360) #25	NT5C1B (ENSPLOG00000004380) #26	OSR1 (ENSPLOG00000004407) #27	TTC32 (ENSPLOG00000004421) #28	WDR35 (ENSPLOG00000004441) #29	MATN3 (ENSPLOG00000004487) #30	ENSPLOG00000004505 #31	SDC1 (ENSPLOG00000004513) #32	ENSPLOG00000004519 #33	PUM2 (ENSPLOG00000004537) #34	ENSPLOG00000004582 #35	RHOB (ENSPLOG00000004676) #36	HS1BP3 (ENSPLOG00000004714) #37
leopard	MODERN SPECIES		C2orf50 (ENSPPRG00000018217)	SLC66A3 (ENSPPRG00000018314) #7	ROCK2 (ENSPPRG00000018610) #8	E2F6 (ENSPPRG00000018702) #9	GREB1 (ENSPPRG00000019270) #10	LPIN1 (ENSPPRG00000019764) #12	TRIB2 (ENSPPRG00000019893) #13	LRATD1 (ENSPPRG00000020023) #14	NBAS (ENSPPRG00000020146) #15	DDX1 (ENSPPRG00000020556) #16	MYCN (ENSPPRG00000020616) #17	CYRIA (ENSPPRG00000020692) #18	RAD51AP2 (ENSPPRG00000020727) #19	VSNL1 (ENSPPRG00000020771) #20	SMC6 (ENSPPRG00000020812) #21	GEN1 (ENSPPRG00000020921) #22	MSGN1 (ENSPPRG00000020043) #23	ENSPPRG00000020962	KCNS3 (ENSPPRG00000020060) #24	RDH14 (ENSPPRG00000020986) #25	NT5C1B (ENSPPRG00000021030) #26	OSR1 (ENSPPRG00000021067) #27	TTC32 (ENSPPRG00000021136) #28	WDR35 (ENSPPRG00000021186) #29	MATN3 (ENSPPRG00000021301) #30	LAPTM4A (ENSPPRG00000021333) #31	SDC1 (ENSPPRG00000021362) #32	ENSPPRG00000021380 #33	PUM2 (ENSPPRG00000021443) #34	ENSPPRG00000021503 #35	ENSPPRG00000020084 #36
Tiger	MODERN SPECIES	149								TRIB2 (ENSPTIG00000017323) #13	NBAS (ENSPTIG00000018904) #15	DDX1 (ENSPTIG00000008267) #16	ENSPTIG00000018921 #17	CYRIA (ENSPTIG00000019497) #18	RAD51AP2 (ENSPTIG00000020726) #19	VSNL1 (ENSPTIG00000020980) #20	SMC6 (ENSPTIG00000001154) #21	GEN1 (ENSPTIG00000007224) #22	MSGN1 (ENSPTIG00000006467) #23	KCNS3 (ENSPTIG00000006472) #24	RDH14 (ENSPTIG00000010724) #25	NT5C1B (ENSPTIG00000011201) #26	OSR1 (ENSPTIG00000012004) #27	TTC32 (ENSPTIG00000012474) #28	WDR35 (ENSPTIG00000012685) #29	MATN3 (ENSPTIG00000015261) #30	LAPTM4A (ENSPTIG00000016492) #31	SDC1 (ENSPTIG00000017404) #32	ENSPTIG00000018625 #33	PUM2 (ENSPTIG00000018982) #34	ENSPTIG00000000251 #35	RHOB (ENSPTIG00000006084) #36	HS1BP3 (ENSPTIG00000010200) #37
Cat	MODERN SPECIES	2	SLC66A3 (ENSFCAG00000014335) #7	ROCK2 (ENSFCAG00000024216) #8	E2F6 (ENSFCAG00000011952) #9	GREB1 (ENSFCAG00000008510) #10	LPIN1 (ENSFCAG00000008518) #12	TRIB2 (ENSFCAG00000035828) #13	LRATD1 (ENSFCAG00000030598) #14	NBAS (ENSFCAG00000004675) #15	DDX1 (ENSFCAG00000004680) #16	ENSFCAG00000048673	MYCN (ENSFCAG00000043374) #17	CYRIA (ENSFCAG00000004125) #18	RAD51AP2 (ENSFCAG00000028900) #19	VSNL1 (ENSFCAG00000023416) #20	SMC6 (ENSFCAG00000013578) #21	GEN1 (ENSFCAG00000013581) #22	MSGN1 (ENSFCAG00000045777) #23	KCNS3 (ENSFCAG00000014253) #24	NT5C1B (ENSFCAG00000010773) #26	OSR1 (ENSFCAG00000026754) #27	TTC32 (ENSFCAG00000037766) #28	WDR35 (ENSFCAG00000005351) #29	MATN3 (ENSFCAG00000033314) #30	ENSFCAG00000043657 #31	SDC1 (ENSFCAG00000005354) #32	ENSFCAG00000039293 #33	PUM2 (ENSFCAG00000027520) #34	ENSFCAG00000028084 #35	ENSFCAG00000048458 #35	HS1BP3 (ENSFCAG00000002398) #37	GDF7 (ENSFCAG00000044521)
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Cetacea	ANCESTRAL SPECIES	16	ENSGT00940000168548	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000168548	ENSGT00390000008041.C.f #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00940000168548	ENSGT00390000008041.C.f #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00390000008041.C.f #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00390000012178.g.b.a.b.b	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00950000185985	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00940000168548	ENSGT00390000008041.C.f #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00390000012178.g.b.a.b.b	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00950000185177	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00390000009688
Narwhal	MODERN SPECIES	305	LPIN1 (ENSMMNG00015006305) #12	ENSMMNG00015006235	TRIB2 (ENSMMNG00015006221) #13	ENSMMNG00015006201	LRATD1 (ENSMMNG00015006182) #14	NBAS (ENSMMNG00015005986) #15	DDX1 (ENSMMNG00015005859) #16	ENSMMNG00015005828	ENSMMNG00015005811 #17	ENSMMNG00015005798	ENSMMNG00015005789 #17	CYRIA (ENSMMNG00015005774) #18	RAD51AP2 (ENSMMNG00015005739) #19	VSNL1 (ENSMMNG00015005727) #20	SMC6 (ENSMMNG00015005666) #21	GEN1 (ENSMMNG00015005619) #22	MSGN1 (ENSMMNG00015005600) #23	KCNS3 (ENSMMNG00015005585) #24	RDH14 (ENSMMNG00015005575) #25	NT5C1B (ENSMMNG00015005540) #26	OSR1 (ENSMMNG00015005525) #27	TTC32 (ENSMMNG00015005504) #28	WDR35 (ENSMMNG00015005480) #29	MATN3 (ENSMMNG00015005436) #30	LAPTM4A (ENSMMNG00015005414) #31	SDC1 (ENSMMNG00015005397) #32	PUM2 (ENSMMNG00015008879) #34	RHOB (ENSMMNG00015008862) #36	HS1BP3 (ENSMMNG00015008848) #37	GDF7 (ENSMMNG00015008839)	LDAH (ENSMMNG00015008820)
Beluga whale	MODERN SPECIES	37	LPIN1 (ENSDLEG00000004420) #12	ENSDLEG00000004406	TRIB2 (ENSDLEG00000004400) #13	ENSDLEG00000004393	ENSDLEG00000004388	FAM84A (ENSDLEG00000004385) #14	NBAS (ENSDLEG00000004320) #15	DDX1 (ENSDLEG00000004022) #16	ENSDLEG00000003947	ENSDLEG00000003941	MYCN (ENSDLEG00000003931) #17	FAM49A (ENSDLEG00000003918) #18	RAD51AP2 (ENSDLEG00000003910) #19	VSNL1 (ENSDLEG00000003903) #20	SMC6 (ENSDLEG00000003874) #21	GEN1 (ENSDLEG00000003850) #22	MSGN1 (ENSDLEG00000003842) #23	KCNS3 (ENSDLEG00000003837) #24	RDH14 (ENSDLEG00000003827) #25	NT5C1B (ENSDLEG00000003811) #26	OSR1 (ENSDLEG00000003804) #27	ENSDLEG00000003800	TTC32 (ENSDLEG00000003795) #28	WDR35 (ENSDLEG00000003761) #29	MATN3 (ENSDLEG00000003741) #30	LAPTM4A (ENSDLEG00000003732) #31	SDC1 (ENSDLEG00000003726) #32	PUM2 (ENSDLEG00000003713) #34	RHOB (ENSDLEG00000003706) #36	HS1BP3 (ENSDLEG00000003696) #37	GDF7 (ENSDLEG00000003664)
Vaquita	MODERN SPECIES	4	LPIN1 (ENSPSNG00000004678) #12	ENSPSNG00000004854	TRIB2 (ENSPSNG00000004874) #13	ENSPSNG00000004892	ENSPSNG00000004906	LRATD1 (ENSPSNG00000004919) #14	NBAS (ENSPSNG00000004987) #15	DDX1 (ENSPSNG00000005062) #16	ENSPSNG00000005167	MYCN (ENSPSNG00000005177) #17	ENSPSNG00000005190	CYRIA (ENSPSNG00000005208) #18	RAD51AP2 (ENSPSNG00000005244) #19	VSNL1 (ENSPSNG00000005265) #20	SMC6 (ENSPSNG00000005297) #21	GEN1 (ENSPSNG00000005368) #22	MSGN1 (ENSPSNG00000005383) #23	KCNS3 (ENSPSNG00000005395) #24	RDH14 (ENSPSNG00000005407) #25	NT5C1B (ENSPSNG00000005430) #26	OSR1 (ENSPSNG00000005478) #27	TTC32 (ENSPSNG00000005497) #28	WDR35 (ENSPSNG00000005538) #29	MATN3 (ENSPSNG00000005606) #30	LAPTM4A (ENSPSNG00000005648) #31	SDC1 (ENSPSNG00000005664) #32	PUM2 (ENSPSNG00000005720) #34	RHOB (ENSPSNG00000005853) #36	HS1BP3 (ENSPSNG00000005889) #37	GDF7 (ENSPSNG00000005912)	LDAH (ENSPSNG00000005977)
Dolphin	MODERN SPECIES	1419														VSNL1 (ENSTTRG00000015908) #20	SMC6 (ENSTTRG00000015911) #21	GEN1 (ENSTTRG00000015915) #22	MSGN1 (ENSTTRG00000015917) #23	KCNS3 (ENSTTRG00000015918) #24
Sperm whale	MODERN SPECIES	3	ROCK2 (ENSPCTG00005014000) #8	ENSPCTG00005014060	ENSPCTG00005014135 #10	ENSPCTG00005014216	LRATD1 (ENSPCTG00005014256) #14	NBAS (ENSPCTG00005014284) #15	DDX1 (ENSPCTG00005014405) #16	ENSPCTG00005015309	ENSPCTG00005015328 #17	ENSPCTG00005015376	ENSPCTG00005015400	FAM49A (ENSPCTG00005015455) #18	RAD51AP2 (ENSPCTG00005015523) #19	VSNL1 (ENSPCTG00005015591) #20	SMC6 (ENSPCTG00005015640) #21	GEN1 (ENSPCTG00005015707) #22	MSGN1 (ENSPCTG00005015740) #23	KCNS3 (ENSPCTG00005015770) #24	RDH14 (ENSPCTG00005015784) #25	NT5C1B (ENSPCTG00005015828) #26	WDR35 (ENSPCTG00005016075) #29	MATN3 (ENSPCTG00005016290) #30	LAPTM4A (ENSPCTG00005016508) #31	ENSPCTG00005016545	PUM2 (ENSPCTG00005016650) #34	RHOB (ENSPCTG00005016876) #36	ENSPCTG00005016911 #37	GDF7 (ENSPCTG00005016929)	LDAH (ENSPCTG00005016984)	KLHL29 (ENSPCTG00005017130)	ATAD2B (ENSPCTG00005017541)
Blue whale	MODERN SPECIES	4	LPIN1 (ENSBMSG00010015983) #12	ENSBMSG00010015898	TRIB2 (ENSBMSG00010015872) #13	ENSBMSG00010015848	ENSBMSG00010015831	LRATD1 (ENSBMSG00010015823) #14	NBAS (ENSBMSG00010015769) #15	DDX1 (ENSBMSG00010015414) #16	ENSBMSG00010015278	ENSBMSG00010015206	MYCN (ENSBMSG00010015182) #17	CYRIA (ENSBMSG00010015112) #18	VSNL1 (ENSBMSG00010014927) #20	ENSBMSG00010014894	SMC6 (ENSBMSG00010014555) #21	ENSBMSG00010014350 #22	MSGN1 (ENSBMSG00010014319) #23	KCNS3 (ENSBMSG00010014305) #24	RDH14 (ENSBMSG00010014286) #25	NT5C1B (ENSBMSG00010014150) #26	OSR1 (ENSBMSG00010014098) #27	TTC32 (ENSBMSG00010014051) #28	WDR35 (ENSBMSG00010013819) #29	MATN3 (ENSBMSG00010013735) #30	LAPTM4A (ENSBMSG00010013698) #31	SDC1 (ENSBMSG00010013669) #32	ENSBMSG00010013651	PUM2 (ENSBMSG00010013534) #34	RHOB (ENSBMSG00010013496) #36	HS1BP3 (ENSBMSG00010013470) #37	GDF7 (ENSBMSG00010013453)
Pecora	ANCESTRAL SPECIES	5	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Percora_a	ANCESTRAL SPECIES	13	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT01030000234517.D #8	ENSGT00990000203553.c.b.o.b	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181.e #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Bos	ANCESTRAL SPECIES	5	ENSGT00990000203553.c.b.o.b	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181.e #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Bos_a	ANCESTRAL SPECIES	6	ENSGT01030000234517.D #8	ENSGT00990000203553.c.b.o.b	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181.e #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Domestic yak	MODERN SPECIES	28	ENSBGRG00000024544	ROCK2 (ENSBGRG00000024309) #8	E2F6 (ENSBGRG00000024251) #9	GREB1 (ENSBGRG00000023941) #10	NTSR2 (ENSBGRG00000023894) #11	LPIN1 (ENSBGRG00000023367) #12	TRIB2 (ENSBGRG00000023292) #13	LRATD1 (ENSBGRG00000023277) #14	NBAS (ENSBGRG00000022914) #15	DDX1 (ENSBGRG00000022559) #16	ENSBGRG00000022487 #17	CYRIA (ENSBGRG00000022323) #18	RAD51AP2 (ENSBGRG00000022307) #19	VSNL1 (ENSBGRG00000022276) #20	SMC6 (ENSBGRG00000022073) #21	GEN1 (ENSBGRG00000022034) #22	MSGN1 (ENSBGRG00000022021) #23	KCNS3 (ENSBGRG00000022008) #24	ENSBGRG00000021977 #25	NT5C1B (ENSBGRG00000021877) #26	OSR1 (ENSBGRG00000021840) #27	ENSBGRG00000021825	TTC32 (ENSBGRG00000021780) #28	WDR35 (ENSBGRG00000020967) #29	MATN3 (ENSBGRG00000020733) #30	SDC1 (ENSBGRG00000020622) #32	PUM2 (ENSBGRG00000020491) #34	ENSBGRG00000020441 #35	ENSBGRG00000020423 #36	RHOB (ENSBGRG00000020410) #36	HS1BP3 (ENSBGRG00000020332) #37
Wild yak	MODERN SPECIES	370								LRATD1 (ENSBMUG00000015351) #14	NBAS (ENSBMUG00000015322) #15	DDX1 (ENSBMUG00000015142) #16	ENSBMUG00000015004 #17	CYRIA (ENSBMUG00000014990) #18	RAD51AP2 (ENSBMUG00000014970) #19	VSNL1 (ENSBMUG00000014955) #20	SMC6 (ENSBMUG00000014908) #21	GEN1 (ENSBMUG00000014871) #22	MSGN1 (ENSBMUG00000014840) #23	KCNS3 (ENSBMUG00000014825) #24	RDH14 (ENSBMUG00000014812) #25
Bos_b	ANCESTRAL SPECIES	16	ENSGT00990000203553.c.b.o.b	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181.e #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.b.b	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Hybrid Bos Indicus	MODERN SPECIES	2	E2F6 (ENSBIXG00005022718) #9	ENSBIXG00005003893	ENSBIXG00005022741	GREB1 (ENSBIXG00005023461) #10	NTSR2 (ENSBIXG00005004030) #11	LPIN1 (ENSBIXG00005023863) #12	TRIB2 (ENSBIXG00005024058) #13	LRATD1 (ENSBIXG00005024161) #14	NBAS (ENSBIXG00005007735) #15	DDX1 (ENSBIXG00005024527) #16	MYCN (ENSBIXG00005024578) #17	CYRIA (ENSBIXG00005024640) #18	RAD51AP2 (ENSBIXG00005024673) #19	VSNL1 (ENSBIXG00005024708) #20	SMC6 (ENSBIXG00005004235) #21	GEN1 (ENSBIXG00005024882) #22	MSGN1 (ENSBIXG00005024894) #23	KCNS3 (ENSBIXG00005024916) #24	RDH14 (ENSBIXG00005024953) #25	NT5C1B (ENSBIXG00005025000) #26	ENSBIXG00005025042 #27	TTC32 (ENSBIXG00005025110) #28	WDR35 (ENSBIXG00005025304) #29	MATN3 (ENSBIXG00005006070) #30	ENSBIXG00005025414	LAPTM4A (ENSBIXG00005025436) #31	SDC1 (ENSBIXG00005004335) #32	PUM2 (ENSBIXG00005004375) #34	ENSBIXG00005025762 #35	RHOB (ENSBIXG00005004398) #36	HS1BP3 (ENSBIXG00005025838) #37
Cow	MODERN SPECIES	2	NLRP6 (ENSBTAG00000001076)	COX8B (ENSBTAG00000002046)	PSMD13 (ENSBTAG00000002045)	SIRT3 (ENSBTAG00000002044)	RIC8A (ENSBTAG00000002042)	BET1L (ENSBTAG00000001744)	ODF3 (ENSBTAG00000001730)	SCGB1C1 (ENSBTAG00000022142)	NBAS (ENSBTAG00000014081) #15	DDX1 (ENSBTAG00000009906) #16	MYCN (ENSBTAG00000023372) #17	CYRIA (ENSBTAG00000012779) #18	RAD51AP2 (ENSBTAG00000037812) #19	VSNL1 (ENSBTAG00000017158) #20	SMC6 (ENSBTAG00000018256) #21	GEN1 (ENSBTAG00000020059) #22	MSGN1 (ENSBTAG00000039113) #23	RDH14 (ENSBTAG00000023928) #25	NT5C1B (ENSBTAG00000005270) #26	OSR1 (ENSBTAG00000008113) #27	TTC32 (ENSBTAG00000015587) #28	WDR35 (ENSBTAG00000051164) #29	MATN3 (ENSBTAG00000020893) #30	ENSBTAG00000052052	LAPTM4A (ENSBTAG00000020894) #31	SDC1 (ENSBTAG00000011154) #32	PUM2 (ENSBTAG00000011155) #34	ENSBTAG00000049117 #35	HS1BP3 (ENSBTAG00000015490) #37	GDF7 (ENSBTAG00000038224)	LDAH (ENSBTAG00000031014)
American bison	MODERN SPECIES	3068													RAD51AP2 (ENSBBBG00000005308) #19	VSNL1 (ENSBBBG00000005304) #20	SMC6 (ENSBBBG00000019549) #21	GEN1 (ENSBBBG00000005250) #22	MSGN1 (ENSBBBG00000005230) #23	KCNS3 (ENSBBBG00000019452) #24	ENSBBBG00000019450 #25	NT5C1B (ENSBBBG00000009192) #26	OSR1 (ENSBBBG00000019430) #27	TTC32 (ENSBBBG00000006785) #28	WDR35 (ENSBBBG00000007319) #29	MATN3 (ENSBBBG00000019335) #30	LAPTM4A (ENSBBBG00000007183) #31	SDC1 (ENSBBBG00000009171) #32	PUM2 (ENSBBBG00000019297) #34	ENSBBBG00000019228 #35	RHOB (ENSBBBG00000019223) #36	HS1BP3 (ENSBBBG00000019208) #37	LDAH (ENSBBBG00000019145)
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Goat	MODERN SPECIES	2	ROCK2 (ENSCHIG00000013173) #8	E2F6 (ENSCHIG00000016333) #9	GREB1 (ENSCHIG00000017667) #10	NTSR2 (ENSCHIG00000011816) #11	LPIN1 (ENSCHIG00000018539) #12	TRIB2 (ENSCHIG00000015740) #13	ENSCHIG00000021912	LRATD1 (ENSCHIG00000008065) #14	ENSCHIG00000013770	NBAS (ENSCHIG00000014758) #15	DDX1 (ENSCHIG00000011046) #16	MYCN (ENSCHIG00000017882) #17	CYRIA (ENSCHIG00000018672) #18	VSNL1 (ENSCHIG00000006913) #20	SMC6 (ENSCHIG00000010144) #21	GEN1 (ENSCHIG00000013888) #22	MSGN1 (ENSCHIG00000010365) #23	KCNS3 (ENSCHIG00000012986) #24	ENSCHIG00000027201 #25	NT5C1B (ENSCHIG00000026605) #26	OSR1 (ENSCHIG00000020202) #27	TTC32 (ENSCHIG00000025091) #28	WDR35 (ENSCHIG00000006588) #29	MATN3 (ENSCHIG00000018061) #30	LAPTM4A (ENSCHIG00000022265) #31	SDC1 (ENSCHIG00000018782) #32	ENSCHIG00000025915 #33	PUM2 (ENSCHIG00000022180) #34	ENSCHIG00000018368 #35	RHOB (ENSCHIG00000012713) #36	HS1BP3 (ENSCHIG00000026302) #37
Siberian musk deer	MODERN SPECIES	239							LRATD1 (ENSMMSG00000001828) #14	NBAS (ENSMMSG00000001890) #15	DDX1 (ENSMMSG00000002128) #16	ENSMMSG00000002254	MYCN (ENSMMSG00000002269) #17	CYRIA (ENSMMSG00000002297) #18	ENSMMSG00000002335	VSNL1 (ENSMMSG00000002354) #20	SMC6 (ENSMMSG00000002375) #21	GEN1 (ENSMMSG00000002401) #22	MSGN1 (ENSMMSG00000002419) #23	KCNS3 (ENSMMSG00000002436) #24	RDH14 (ENSMMSG00000002449) #25	NT5C1B (ENSMMSG00000002465) #26	OSR1 (ENSMMSG00000002491) #27	TTC32 (ENSMMSG00000002503) #28	WDR35 (ENSMMSG00000002532) #29	ENSMMSG00000002584	MATN3 (ENSMMSG00000002615) #30	LAPTM4A (ENSMMSG00000002657) #31	ENSMMSG00000002671	SDC1 (ENSMMSG00000002684) #32	PUM2 (ENSMMSG00000002715) #34	ENSMMSG00000002810 #35	RHOB (ENSMMSG00000002823) #36
Yarkand deer	MODERN SPECIES	2	ENSCHYG00000009170	ROCK2 (ENSCHYG00000008822) #8	ENSCHYG00000008703 #9	GREB1 (ENSCHYG00000008543) #10	NTSR2 (ENSCHYG00000008520) #11	LPIN1 (ENSCHYG00000008194) #12	TRIB2 (ENSCHYG00000008145) #13	LRATD1 (ENSCHYG00000008068) #14	NBAS (ENSCHYG00000007960) #15	DDX1 (ENSCHYG00000007524) #16	ENSCHYG00000007479 #17	CYRIA (ENSCHYG00000007408) #18	RAD51AP2 (ENSCHYG00000007371) #19	VSNL1 (ENSCHYG00000007343) #20	SMC6 (ENSCHYG00000007159) #21	GEN1 (ENSCHYG00000007066) #22	MSGN1 (ENSCHYG00000007045) #23	KCNS3 (ENSCHYG00000007031) #24	RDH14 (ENSCHYG00000007014) #25	NT5C1B (ENSCHYG00000006961) #26	ENSCHYG00000006946	OSR1 (ENSCHYG00000006938) #27	TTC32 (ENSCHYG00000006877) #28	WDR35 (ENSCHYG00000006261) #29	MATN3 (ENSCHYG00000006044) #30	LAPTM4A (ENSCHYG00000005989) #31	SDC1 (ENSCHYG00000005966) #32	PUM2 (ENSCHYG00000005651) #34	ENSCHYG00000005597 #35	RHOB (ENSCHYG00000005587) #36	HS1BP3 (ENSCHYG00000005568) #37
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT01090000263460
Arabian camel	MODERN SPECIES	6	E2F6 (ENSCDRG00005003569) #9	GREB1 (ENSCDRG00005003633) #10	NTSR2 (ENSCDRG00005003795) #11	LPIN1 (ENSCDRG00005003875) #12	TRIB2 (ENSCDRG00005004180) #13	ENSCDRG00005004212	LRATD1 (ENSCDRG00005004252) #14	NBAS (ENSCDRG00005004285) #15	DDX1 (ENSCDRG00005004527) #16	ENSCDRG00005004697 #17	ENSCDRG00005004717 #17	CYRIA (ENSCDRG00005004743) #18	RAD51AP2 (ENSCDRG00005004783) #19	VSNL1 (ENSCDRG00005004814) #20	SMC6 (ENSCDRG00005004835) #21	GEN1 (ENSCDRG00005004909) #22	MSGN1 (ENSCDRG00005004972) #23	KCNS3 (ENSCDRG00005004986) #24	RDH14 (ENSCDRG00005004999) #25	NT5C1B (ENSCDRG00005005015) #26	OSR1 (ENSCDRG00005005052) #27	TTC32 (ENSCDRG00005005072) #28	ENSCDRG00005005097 #29	MATN3 (ENSCDRG00005005117) #30	LAPTM4A (ENSCDRG00005005142) #31	ENSCDRG00005005168 #35	SDC1 (ENSCDRG00005005384) #32	ENSCDRG00005005424 #33	PUM2 (ENSCDRG00005005454) #34	RHOB (ENSCDRG00005005629) #36	HS1BP3 (ENSCDRG00005005637) #37
Alpaca	MODERN SPECIES	2892														RAD51AP2 (ENSVPAG00000010297) #19	SMC6 (ENSVPAG00000010300) #21	GEN1 (ENSVPAG00000010307) #22
Suina	ANCESTRAL SPECIES	13	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Pig	MODERN SPECIES	11	E2F6 (ENSSSCG00000026161) #9	GREB1 (ENSSSCG00000025483) #10	NTSR2 (ENSSSCG00000008625) #11	LPIN1 (ENSSSCG00000008624) #12	TRIB2 (ENSSSCG00000039080) #13	ENSSSCG00000042932	LRATD1 (ENSSSCG00000008664) #14	NBAS (ENSSSCG00000008621) #15	DDX1 (ENSSSCG00000008619) #16	MYCN (ENSSSCG00000008618) #17	ENSSSCG00000033084	CYRIA (ENSSSCG00000008617) #18	RAD51AP2 (ENSSSCG00000038058) #19	VSNL1 (ENSSSCG00000008615) #20	SMC6 (ENSSSCG00000008614) #21	GEN1 (ENSSSCG00000008613) #22	MSGN1 (ENSSSCG00000026538) #23	ENSSSCG00000040752	KCNS3 (ENSSSCG00000031905) #24	RDH14 (ENSSSCG00000008608) #25	NT5C1B (ENSSSCG00000008607) #26	ENSSSCG00000054495	OSR1 (ENSSSCG00000060496) #27	ENSSSCG00000058710	TTC32 (ENSSSCG00000053616) #28	WDR35 (ENSSSCG00000008604) #29	MATN3 (ENSSSCG00000008603) #30	LAPTM4A (ENSSSCG00000008602) #31	SDC1 (ENSSSCG00000008601) #32	PUM2 (ENSSSCG00000008600) #34	ENSSSCG00000054581 #35
Chacoan peccary	MODERN SPECIES	776			E2F6 (ENSCWAG00000013986) #9	GREB1 (ENSCWAG00000014037) #10	NTSR2 (ENSCWAG00000014475) #11	LPIN1 (ENSCWAG00000014537) #12	TRIB2 (ENSCWAG00000015191) #13	LRATD1 (ENSCWAG00000015236) #14	NBAS (ENSCWAG00000015265) #15	DDX1 (ENSCWAG00000015647) #16	MYCN (ENSCWAG00000015961) #17	CYRIA (ENSCWAG00000016027) #18	RAD51AP2 (ENSCWAG00000016094) #19	VSNL1 (ENSCWAG00000016143) #20	SMC6 (ENSCWAG00000016171) #21	GEN1 (ENSCWAG00000016234) #22	MSGN1 (ENSCWAG00000016325) #23	KCNS3 (ENSCWAG00000016339) #24	RDH14 (ENSCWAG00000016353) #25	NT5C1B (ENSCWAG00000016386) #26	OSR1 (ENSCWAG00000016456) #27	TTC32 (ENSCWAG00000016481) #28	WDR35 (ENSCWAG00000016523) #29	MATN3 (ENSCWAG00000016742) #30	LAPTM4A (ENSCWAG00000016902) #31	SDC1 (ENSCWAG00000016920) #32	PUM2 (ENSCWAG00000003696) #34	ENSCWAG00000003897 #35	RHOB (ENSCWAG00000004001) #36	HS1BP3 (ENSCWAG00000004014) #37	GDF7 (ENSCWAG00000004046)
Eulipotyphla	ANCESTRAL SPECIES	1441															ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22
Common shrew	MODERN SPECIES	4284															SMC6 (ENSSARG00000014427) #21	GEN1 (ENSSARG00000014442) #22
Hedgehog	MODERN SPECIES	7199																GEN1 (ENSEEUG00000004845) #22
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000169919	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Xenarthra	ANCESTRAL SPECIES	803													ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24
Armadillo	MODERN SPECIES	784									CYRIA (ENSDNOG00000034711) #18	ENSDNOG00000048026	RAD51AP2 (ENSDNOG00000049595) #19	ENSDNOG00000030945	VSNL1 (ENSDNOG00000043870) #20	ENSDNOG00000035527	ENSDNOG00000005599	GEN1 (ENSDNOG00000036480) #22	MSGN1 (ENSDNOG00000013441) #23	KCNS3 (ENSDNOG00000043353) #24
Sloth	MODERN SPECIES	4923															SMC6 (ENSCHOG00000008563) #21	ENSCHOG00000008614 #22
Afrotheria	ANCESTRAL SPECIES	26	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000169919	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Afrotheria_a	ANCESTRAL SPECIES	26	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000169919	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Elephant	MODERN SPECIES	197	ROCK2 (ENSLAFG00000007153) #8	E2F6 (ENSLAFG00000021573) #9	GREB1 (ENSLAFG00000003341) #10	ENSLAFG00000016802	LPIN1 (ENSLAFG00000008202) #12	TRIB2 (ENSLAFG00000013795) #13	LRATD1 (ENSLAFG00000012514) #14	ENSLAFG00000013044 #15	ENSLAFG00000030074 #15	DDX1 (ENSLAFG00000002213) #16	MYCN (ENSLAFG00000015181) #17	CYRIA (ENSLAFG00000014613) #18	RAD51AP2 (ENSLAFG00000025867) #19	VSNL1 (ENSLAFG00000015994) #20	SMC6 (ENSLAFG00000007506) #21	GEN1 (ENSLAFG00000023255) #22	MSGN1 (ENSLAFG00000015319) #23	ENSLAFG00000029496	ENSLAFG00000028092	KCNS3 (ENSLAFG00000021521) #24	RDH14 (ENSLAFG00000022569) #25	NT5C1B (ENSLAFG00000007746) #26	OSR1 (ENSLAFG00000027174) #27	ENSLAFG00000027572	ENSLAFG00000030361	TTC32 (ENSLAFG00000014830) #28	WDR35 (ENSLAFG00000014834) #29	MATN3 (ENSLAFG00000014853) #30	LAPTM4A (ENSLAFG00000013774) #31	SDC1 (ENSLAFG00000022920) #32	PUM2 (ENSLAFG00000009278) #34
Hyrax	MODERN SPECIES	4551														VSNL1 (ENSPCAG00000012647) #20	SMC6 (ENSPCAG00000012676) #21	GEN1 (ENSPCAG00000012835) #22
Tenrec	MODERN SPECIES	5362															SMC6 (ENSETEG00000015304) #21	ENSETEG00000015308 #22
Marsupialia	ANCESTRAL SPECIES	35	ENSGT00940000157631	ENSGT00390000013048	ENSGT01050000244898.b.a	ENSGT00940000154863	ENSGT00940000157488	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.f #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Marsupialia_b	ANCESTRAL SPECIES	23	ENSGT00940000157631	ENSGT00390000013048	ENSGT01050000244898.b.a	ENSGT00940000154863	ENSGT00940000157488	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.f #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092.b #37
Diprotodontia	ANCESTRAL SPECIES	35	ENSGT00940000157631	ENSGT00390000013048	ENSGT01050000244898.b.a	ENSGT00940000154863	ENSGT00940000157488	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00960000192062	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.f #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092.b #37
Diprotodontia_a	ANCESTRAL SPECIES	34	ENSGT00940000157631	ENSGT00390000013048	ENSGT01050000244898.b.a	ENSGT00940000154863	ENSGT00940000157488	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00960000192062	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.f #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092.b #37
Common wonbat	MODERN SPECIES	694	TET3 (ENSVURG00010023722)	BOLA3 (ENSVURG00010023724)	ENSVURG00010023725	MTHFD2 (ENSVURG00010023727)	SLC4A5 (ENSVURG00010023729)	LPIN1 (ENSVURG00010023733) #12	TRIB2 (ENSVURG00010023736) #13	ENSVURG00010023738	LRATD1 (ENSVURG00010023740) #14	NBAS (ENSVURG00010023744) #15	DDX1 (ENSVURG00010023755) #16	MYCN (ENSVURG00010023760) #17	CYRIA (ENSVURG00010023771) #18	VSNL1 (ENSVURG00010023772) #20	ENSVURG00010023775 #21	GEN1 (ENSVURG00010023780) #22	MSGN1 (ENSVURG00010023787) #23	KCNS3 (ENSVURG00010023790) #24	RDH14 (ENSVURG00010023793) #25	ENSVURG00010023796 #26	ENSVURG00010023800 #27	TTC32 (ENSVURG00010023802) #28	WDR35 (ENSVURG00010023804) #29	LAPTM4A (ENSVURG00010023811) #31	ENSVURG00010023814 #32	ENSVURG00010023816 #33	PUM2 (ENSVURG00010023817) #34	ENSVURG00010023821 #35	RHOB (ENSVURG00010023826) #36
koala	MODERN SPECIES	175							ENSPCIG00000018101 #14	NBAS (ENSPCIG00000010934) #15	DDX1 (ENSPCIG00000010941) #16	MYCN (ENSPCIG00000036099) #17	ENSPCIG00000001358	CYRIA (ENSPCIG00000010035) #18	ENSPCIG00000035261	VSNL1 (ENSPCIG00000029441) #20	ENSPCIG00000029439 #21	ENSPCIG00000029438 #22	MSGN1 (ENSPCIG00000029437) #23	KCNS3 (ENSPCIG00000029436) #24	RDH14 (ENSPCIG00000024554) #25	ENSPCIG00000016776 #26	OSR1 (ENSPCIG00000011035) #27	TTC32 (ENSPCIG00000035406) #28	ENSPCIG00000022097 #29	MATN3 (ENSPCIG00000016627) #30	LAPTM4A (ENSPCIG00000016629) #31	ENSPCIG00000035866 #32	ENSPCIG00000022138 #33	PUM2 (ENSPCIG00000022139) #34	ENSPCIG00000022147 #35	RHOB (ENSPCIG00000036417) #36	ENSPCIG00000022157 #37
Wallaby	MODERN SPECIES	8589																ENSMEUG00000016284 #22
Tasmanian devil	MODERN SPECIES	1	TET3 (ENSSHAG00000028758)	ENSSHAG00000007748	MOB1A (ENSSHAG00000021354)	ENSSHAG00000008571	ENSSHAG00000008676	ENSSHAG00000001060 #12	TRIB2 (ENSSHAG00000020582) #13	LRATD1 (ENSSHAG00000026203) #14	NBAS (ENSSHAG00000008409) #15	DDX1 (ENSSHAG00000009363) #16	ENSSHAG00000030834 #17	CYRIA (ENSSHAG00000031827) #18	ENSSHAG00000030057 #19	VSNL1 (ENSSHAG00000030993) #20	ENSSHAG00000004113 #21	ENSSHAG00000020514 #22	KCNS3 (ENSSHAG00000001315) #24	RDH14 (ENSSHAG00000009042) #25	ENSSHAG00000008640 #26	WDR35 (ENSSHAG00000007255) #29	MATN3 (ENSSHAG00000006973) #30	LAPTM4A (ENSSHAG00000006571) #31	ENSSHAG00000031833 #33	PUM2 (ENSSHAG00000002778) #34	ENSSHAG00000000746 #35	RHOB (ENSSHAG00000031379) #36	ENSSHAG00000007625 #37	GDF7 (ENSSHAG00000024813)	ENSSHAG00000025983	ENSSHAG00000006797	APOB (ENSSHAG00000002807)
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000177852
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00960000192062	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Episquamata	ANCESTRAL SPECIES		ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00960000192062	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000155745 #29	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00960000192062	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000155745 #29	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Lizard	MODERN SPECIES		ENSACAG00000038536	LRATD1 (ENSACAG00000000402) #14	ENSACAG00000036783	ENSACAG00000038844	ENSACAG00000042544	ENSACAG00000036037	ENSACAG00000040466	NBAS (ENSACAG00000010861) #15	DDX1 (ENSACAG00000011036) #16	MYCN (ENSACAG00000011351) #17	CYRIA (ENSACAG00000000956) #18	ENSACAG00000042126	VSNL1 (ENSACAG00000001746) #20	ENSACAG00000040359	SMC6 (ENSACAG00000001613) #21	GEN1 (ENSACAG00000001607) #22	MSGN1 (ENSACAG00000001604) #23	KCNS3 (ENSACAG00000001600) #24	ENSACAG00000034780	ENSACAG00000010816	ENSACAG00000043172	ENSACAG00000038525	ENSACAG00000004579	ENSACAG00000038429	ENSACAG00000035373	ENSACAG00000034865	KLHL29 (ENSACAG00000011365)	ATAD2B (ENSACAG00000011448)	UBXN2A (ENSACAG00000011587)	MFSD2B (ENSACAG00000029258)	WDCP (ENSACAG00000011645)
Elapidae	ANCESTRAL SPECIES		ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT01010000229139	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.c #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000155745 #29	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00950000185286
Elapidae_a	DUPLICATION
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT01010000229139	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.c #21	ENSGT00940000159266.e #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000155745 #29	ENSGT00940000160181.a #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b	ENSGT00950000185286
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT01010000229139	ENSGT00390000008041.C #10	ENSGT00940000157219.c #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00940000156513 #20	ENSGT00550000074816.A.a.c #21	ENSGT00940000159266.e #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000155745 #29	ENSGT00940000160181.a #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00950000185286
Mainland tiger snake	MODERN SPECIES	74														VSNL1 (ENSNSUG00000005729) #20	SMC6 (ENSNSUG00000003811) #21	GEN1 (ENSNSUG00000003777) #22	MSGN1 (ENSNSUG00000003773) #23	KCNS3 (ENSNSUG00000003771) #24	WDR35 (ENSNSUG00000003762) #29	RDH14 (ENSNSUG00000003758) #25	NT5C1B (ENSNSUG00000003749) #26	OSR1 (ENSNSUG00000003748) #27	ENSNSUG00000003742	TTC32 (ENSNSUG00000003736) #28	LAPTM4A (ENSNSUG00000003734) #31	SDC1 (ENSNSUG00000003733) #32	PUM2 (ENSNSUG00000000851) #34	ENSNSUG00000000764 #35	RHOB (ENSNSUG00000000761) #36	HS1BP3 (ENSNSUG00000000758) #37	ENSNSUG00000000756
Eastern brown snake	MODERN SPECIES	4	SLC66A3 (ENSPTXG00000012846) #7	ROCK2 (ENSPTXG00000012863) #8	E2F6 (ENSPTXG00000014503) #9	ENSPTXG00000014504	GREB1 (ENSPTXG00000014506) #10	LPIN1 (ENSPTXG00000014511) #12	TRIB2 (ENSPTXG00000014512) #13	LRATD1 (ENSPTXG00000014513) #14	NBAS (ENSPTXG00000014516) #15	DDX1 (ENSPTXG00000014521) #16	MYCN (ENSPTXG00000014526) #17	CYRIA (ENSPTXG00000014529) #18	VSNL1 (ENSPTXG00000014531) #20	SMC6 (ENSPTXG00000014533) #21	ENSPTXG00000014536	ENSPTXG00000014537 #22	MSGN1 (ENSPTXG00000014539) #23	KCNS3 (ENSPTXG00000014540) #24	WDR35 (ENSPTXG00000014548) #29	RDH14 (ENSPTXG00000014558) #25	NT5C1B (ENSPTXG00000014559) #26	OSR1 (ENSPTXG00000014560) #27	ENSPTXG00000014561	TTC32 (ENSPTXG00000014562) #28	LAPTM4A (ENSPTXG00000014563) #31	SDC1 (ENSPTXG00000014564) #32	PUM2 (ENSPTXG00000014565) #34	ENSPTXG00000014566 #35	RHOB (ENSPTXG00000014567) #36	HS1BP3 (ENSPTXG00000014568) #37	GDF7 (ENSPTXG00000014569)
Blue-lipped sea krait	MODERN SPECIES	5826																GEN1 (ENSLLTG00000006176) #22	MSGN1 (ENSLLTG00000006170) #23	KCNS3 (ENSLLTG00000006167) #24
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000159266.f #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00940000159266.f #22
Eastern brown snake	MODERN SPECIES	1713															ENSPTXG00000012644	ENSPTXG00000012646 #22
Indian cobra	MODERN SPECIES		ROCK2 (ENSNNAG00000012714) #8	E2F6 (ENSNNAG00000004227) #9	ENSNNAG00000004249	GREB1 (ENSNNAG00000004275) #10	LPIN1 (ENSNNAG00000004384) #12	TRIB2 (ENSNNAG00000004479) #13	LRATD1 (ENSNNAG00000004490) #14	NBAS (ENSNNAG00000004531) #15	DDX1 (ENSNNAG00000004957) #16	MYCN (ENSNNAG00000005197) #17	CYRIA (ENSNNAG00000005209) #18	ENSNNAG00000005240	ENSNNAG00000005266	VSNL1 (ENSNNAG00000005283) #20	SMC6 (ENSNNAG00000005310) #21	ENSNNAG00000005468 #22	MSGN1 (ENSNNAG00000005477) #23	KCNS3 (ENSNNAG00000005487) #24	WDR35 (ENSNNAG00000005515) #29	RDH14 (ENSNNAG00000005638) #25	NT5C1B (ENSNNAG00000005647) #26	OSR1 (ENSNNAG00000005665) #27	ENSNNAG00000005690	TTC32 (ENSNNAG00000005721) #28	LAPTM4A (ENSNNAG00000005741) #31	ENSNNAG00000005759 #32	ENSNNAG00000005775	PUM2 (ENSNNAG00000005799) #34	ENSNNAG00000005965 #35	RHOB (ENSNNAG00000006172) #36	HS1BP3 (ENSNNAG00000006192) #37
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000155745 #29	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37	ENSGT00940000160140.b
Argentine black and white tegu	MODERN SPECIES	43	PAIP2 (ENSSMRG00000022733)	SLC23A1 (ENSSMRG00000022734)	E2F6 (ENSSMRG00000022735) #9	GREB1 (ENSSMRG00000022736) #10	LPIN1 (ENSSMRG00000022737) #12	TRIB2 (ENSSMRG00000022739) #13	LRATD1 (ENSSMRG00000022742) #14	NBAS (ENSSMRG00000022743) #15	DDX1 (ENSSMRG00000022744) #16	MYCN (ENSSMRG00000022746) #17	ENSSMRG00000022749	CYRIA (ENSSMRG00000022751) #18	ENSSMRG00000022753	VSNL1 (ENSSMRG00000022754) #20	SMC6 (ENSSMRG00000022755) #21	GEN1 (ENSSMRG00000022756) #22	MSGN1 (ENSSMRG00000022757) #23	KCNS3 (ENSSMRG00000022758) #24	WDR35 (ENSSMRG00000022759) #29	RDH14 (ENSSMRG00000022761) #25	NT5C1B (ENSSMRG00000022762) #26
Common wall lizard	MODERN SPECIES	11	ESF1 (ENSPMRG00000002058)	NDUFAF5 (ENSPMRG00000002068)	SEL1L2 (ENSPMRG00000002085)	ENSPMRG00000002121	FLRT3 (ENSPMRG00000002123)	KIF16B (ENSPMRG00000002144)	SNRPB2 (ENSPMRG00000002233)	OTOR (ENSPMRG00000002241)	PCSK2 (ENSPMRG00000002244)	BFSP1 (ENSPMRG00000002249)	ENSPMRG00000002256	ENSPMRG00000002259	ENSPMRG00000002261	VSNL1 (ENSPMRG00000002266) #20	SMC6 (ENSPMRG00000002270) #21	GEN1 (ENSPMRG00000002288) #22	KCNS3 (ENSPMRG00000002300) #24	WDR35 (ENSPMRG00000002308) #29	RDH14 (ENSPMRG00000002345) #25	NT5C1B (ENSPMRG00000002348) #26	OSR1 (ENSPMRG00000002362) #27	ENSPMRG00000002372	TTC32 (ENSPMRG00000002380) #28	LAPTM4A (ENSPMRG00000002388) #31	MATN3 (ENSPMRG00000002396) #30	SDC1 (ENSPMRG00000002406) #32	PUM2 (ENSPMRG00000010266) #34	ENSPMRG00000010287 #35	RHOB (ENSPMRG00000010292) #36	HS1BP3 (ENSPMRG00000010298) #37	GDF7 (ENSPMRG00000010304)
tuatara	MODERN SPECIES	709														VSNL1 (ENSSPUG00000002309) #20	SMC6 (ENSSPUG00000002341) #21	ENSSPUG00000002388 #22	KCNS3 (ENSSPUG00000002407) #24
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000177852
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34	ENSGT00940000162520.d #35
Aves	ANCESTRAL SPECIES	10	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35
Anatidae	ANCESTRAL SPECIES		ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35
Pink-footed goose	MODERN SPECIES	171												CYRIA (ENSABRG00000014109) #18	ENSABRG00000014137 #19	VSNL1 (ENSABRG00000014146) #20	SMC6 (ENSABRG00000014152) #21	GEN1 (ENSABRG00000014167) #22	MSGN1 (ENSABRG00000014179) #23	ENSABRG00000014184	KCNS3 (ENSABRG00000014206) #24	RDH14 (ENSABRG00000014216) #25	NT5C1B (ENSABRG00000014218) #26
Duck	MODERN SPECIES	21	UFL1 (ENSAPLG00000005301)	FHL5 (ENSAPLG00000005672)	GPR63 (ENSAPLG00000001077)	NDUFAF4 (ENSAPLG00000005892)	KLHL32 (ENSAPLG00000005979)	MMS22L (ENSAPLG00000006108)	TRIB2 (ENSAPLG00000013170) #13	LRATD1 (ENSAPLG00000011566) #14	NBAS (ENSAPLG00000012361) #15	DDX1 (ENSAPLG00000011093) #16	MYCN (ENSAPLG00000009825) #17	CYRIA (ENSAPLG00000009498) #18	ENSAPLG00000025611 #19	VSNL1 (ENSAPLG00000010558) #20	SMC6 (ENSAPLG00000008910) #21	GEN1 (ENSAPLG00000008596) #22	MSGN1 (ENSAPLG00000001852) #23	ENSAPLG00000008127	KCNS3 (ENSAPLG00000001833) #24	RDH14 (ENSAPLG00000008116) #25	NT5C1B (ENSAPLG00000008001) #26	OSR1 (ENSAPLG00000007971) #27	ENSAPLG00000007727	TTC32 (ENSAPLG00000007719) #28	WDR35 (ENSAPLG00000007231) #29	MATN3 (ENSAPLG00000006850) #30	LAPTM4A (ENSAPLG00000006688) #31	ENSAPLG00000019338	SDC1 (ENSAPLG00000010484) #32	PUM2 (ENSAPLG00000010496) #34	ENSAPLG00000011262 #35
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734.ab #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00940000164003
Japanese quail	MODERN SPECIES	21	SLC66A3 (ENSCJPG00005011053) #7	ROCK2 (ENSCJPG00005011054) #8	E2F6 (ENSCJPG00005011055) #9	ENSCJPG00005011056	GREB1 (ENSCJPG00005011057) #10	LPIN1 (ENSCJPG00005011058) #12	TRIB2 (ENSCJPG00005011061) #13	LRATD1 (ENSCJPG00005011069) #14	NBAS (ENSCJPG00005011080) #15	DDX1 (ENSCJPG00005011093) #16	MYCN (ENSCJPG00005011100) #17	CYRIA (ENSCJPG00005011106) #18	ENSCJPG00005011113 #19	VSNL1 (ENSCJPG00005011115) #20	SMC6 (ENSCJPG00005011116) #21	GEN1 (ENSCJPG00005011117) #22	MSGN1 (ENSCJPG00005011118) #23	ENSCJPG00005011119	RDH14 (ENSCJPG00005011121) #25	NT5C1B (ENSCJPG00005011122) #26	OSR1 (ENSCJPG00005011136) #27	ENSCJPG00005011142	TTC32 (ENSCJPG00005011143) #28	WDR35 (ENSCJPG00005011144) #29	MATN3 (ENSCJPG00005011280) #30	LAPTM4A (ENSCJPG00005011281) #31	SDC1 (ENSCJPG00005011283) #32	PUM2 (ENSCJPG00005011284) #34	ENSCJPG00005011289 #35	RHOB (ENSCJPG00005011290) #36	HS1BP3 (ENSCJPG00005011293) #37
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734.ab #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00940000164003
Chicken	MODERN SPECIES	22	SLC66A3 (ENSGALG00010002673) #7	ROCK2 (ENSGALG00010002706) #8	E2F6 (ENSGALG00010002730) #9	GREB1 (ENSGALG00010002758) #10	LPIN1 (ENSGALG00010002832) #12	TRIB2 (ENSGALG00010002848) #13	FAM84A (ENSGALG00010002918) #14	NBAS (ENSGALG00010002952) #15	DDX1 (ENSGALG00010003057) #16	ENSGALG00010003639	MYCN (ENSGALG00010003652) #17	FAM49A (ENSGALG00010002341) #18	ENSGALG00010002344	VSNL1 (ENSGALG00010002364) #20	SMC6 (ENSGALG00010002372) #21	GEN1 (ENSGALG00010002376) #22	MSGN1 (ENSGALG00010003849) #23	ZPAX (ENSGALG00010003469)	KCNS3 (ENSGALG00010003438) #24	RDH14 (ENSGALG00010003665) #25	NT5C1B (ENSGALG00010003681) #26	OSR1 (ENSGALG00010002500) #27	ENSGALG00010002513	TTC32 (ENSGALG00010002520) #28	WDR35 (ENSGALG00010002551) #29	MATN3 (ENSGALG00010002579) #30	LAPTM4A (ENSGALG00010007992) #31	SDC1 (ENSGALG00010007999) #32	PUM2 (ENSGALG00010008032) #34	ENSGALG00010008042 #35	RHOB (ENSGALG00010008046) #36
Turkey	MODERN SPECIES	11	RPS7 (ENSMGAG00000013978)	ENSMGAG00000013979	ENSMGAG00000013977	ENSMGAG00000013975	ENSMGAG00000013974	TRIB2 (ENSMGAG00000019802) #13	LRATD1 (ENSMGAG00000022775) #14	NBAS (ENSMGAG00000014024) #15	DDX1 (ENSMGAG00000014025) #16	ENSMGAG00000022947 #17	ENSMGAG00000006102	CYRIA (ENSMGAG00000014026) #18	ENSMGAG00000021857 #19	VSNL1 (ENSMGAG00000014027) #20	SMC6 (ENSMGAG00000014028) #21	ENSMGAG00000014029 #22	MSGN1 (ENSMGAG00000016374) #23	ENSMGAG00000014030	KCNS3 (ENSMGAG00000015620) #24	RDH14 (ENSMGAG00000021183) #25	NT5C1B (ENSMGAG00000014031) #26	OSR1 (ENSMGAG00000014033) #27	ENSMGAG00000014037	TTC32 (ENSMGAG00000019538) #28	WDR35 (ENSMGAG00000014034) #29	MATN3 (ENSMGAG00000014036) #30	LAPTM4A (ENSMGAG00000014038) #31	SDC1 (ENSMGAG00000014039) #32	PUM2 (ENSMGAG00000014040) #34	ENSMGAG00000014041 #35	ENSMGAG00000015625
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000160213	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Great tit	MODERN SPECIES	22	PDIA6 (ENSPMJG00000012436)	SLC66A3 (ENSPMJG00000012442) #7	ROCK2 (ENSPMJG00000012447) #8	E2F6 (ENSPMJG00000012450) #9	GREB1 (ENSPMJG00000012451) #10	LPIN1 (ENSPMJG00000012453) #12	TRIB2 (ENSPMJG00000012455) #13	LRATD1 (ENSPMJG00000012465) #14	NBAS (ENSPMJG00000012468) #15	DDX1 (ENSPMJG00000012469) #16	MYCN (ENSPMJG00000012473) #17	CYRIA (ENSPMJG00000012475) #18	ENSPMJG00000012476 #19	VSNL1 (ENSPMJG00000012477) #20	SMC6 (ENSPMJG00000012478) #21	GEN1 (ENSPMJG00000012479) #22	MSGN1 (ENSPMJG00000012480) #23	KCNS3 (ENSPMJG00000012481) #24	RDH14 (ENSPMJG00000012483) #25	NT5C1B (ENSPMJG00000012484) #26	OSR1 (ENSPMJG00000012488) #27	ENSPMJG00000012490	TTC32 (ENSPMJG00000012491) #28	WDR35 (ENSPMJG00000012492) #29	MATN3 (ENSPMJG00000012493) #30	LAPTM4A (ENSPMJG00000012494) #31	ENSPMJG00000012495	SDC1 (ENSPMJG00000012496) #32	ENSPMJG00000012497 #33	PUM2 (ENSPMJG00000012498) #34	ENSPMJG00000012500 #35
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000160213	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000153916.B #7	ENSGT00990000205825	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000153916.B #7	ENSGT00990000205825	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00900000143081 #33	ENSGT00940000157575 #34
Common canary	MODERN SPECIES	1	SLC66A3 (ENSSCAG00000012565) #7	ROCK2 (ENSSCAG00000012610) #8	E2F6 (ENSSCAG00000012631) #9	GREB1 (ENSSCAG00000012639) #10	LPIN1 (ENSSCAG00000012667) #12	TRIB2 (ENSSCAG00000012687) #13	LRATD1 (ENSSCAG00000012692) #14	NBAS (ENSSCAG00000012763) #15	DDX1 (ENSSCAG00000013147) #16	MYCN (ENSSCAG00000013162) #17	ENSSCAG00000013165 #17	CYRIA (ENSSCAG00000013175) #18	ENSSCAG00000013192 #19	VSNL1 (ENSSCAG00000013204) #20	SMC6 (ENSSCAG00000013216) #21	GEN1 (ENSSCAG00000013242) #22	MSGN1 (ENSSCAG00000013255) #23	KCNS3 (ENSSCAG00000013262) #24	RDH14 (ENSSCAG00000013279) #25	NT5C1B (ENSSCAG00000013290) #26	OSR1 (ENSSCAG00000013326) #27	ENSSCAG00000013351	TTC32 (ENSSCAG00000013359) #28	WDR35 (ENSSCAG00000013365) #29	MATN3 (ENSSCAG00000013373) #30	LAPTM4A (ENSSCAG00000013378) #31	ENSSCAG00000013381	SDC1 (ENSSCAG00000013387) #32	ENSSCAG00000013394 #33	PUM2 (ENSSCAG00000013402) #34	ENSSCAG00000013425 #35
Zebra finch	MODERN SPECIES	23	SLC66A3 (ENSTGUG00000026462) #7	ENSTGUG00000023758	ROCK2 (ENSTGUG00000013067) #8	ENSTGUG00000013076 #9	GREB1 (ENSTGUG00000013081) #10	LPIN1 (ENSTGUG00000013085) #12	TRIB2 (ENSTGUG00000013089) #13	LRATD1 (ENSTGUG00000013091) #14	NBAS (ENSTGUG00000013092) #15	DDX1 (ENSTGUG00000013096) #16	ENSTGUG00000027142 #17	MYCN (ENSTGUG00000013104) #17	CYRIA (ENSTGUG00000013106) #18	ENSTGUG00000019456 #19	SMC6 (ENSTGUG00000013110) #21	GEN1 (ENSTGUG00000013117) #22	VSNL1 (ENSTGUG00000013109) #20	MSGN1 (ENSTGUG00000013122) #23	ENSTGUG00000013124	KCNS3 (ENSTGUG00000013126) #24	RDH14 (ENSTGUG00000013127) #25	NT5C1B (ENSTGUG00000013129) #26	OSR1 (ENSTGUG00000019377) #27	ENSTGUG00000013130	TTC32 (ENSTGUG00000013135) #28	WDR35 (ENSTGUG00000013136) #29	MATN3 (ENSTGUG00000013143) #30	LAPTM4A (ENSTGUG00000013146) #31	ENSTGUG00000024330	SDC1 (ENSTGUG00000013148) #32	PUM2 (ENSTGUG00000013149) #34
Medium ground finch	MODERN SPECIES	21	SLC66A3 (ENSGFOG00000007534) #7	ENSGFOG00000007525	ROCK2 (ENSGFOG00000007498) #8	ENSGFOG00000007490 #9	ENSGFOG00000007488 #9	GREB1 (ENSGFOG00000007462) #10	LPIN1 (ENSGFOG00000005160) #12	TRIB2 (ENSGFOG00000010590) #13	LRATD1 (ENSGFOG00000010589) #14	NBAS (ENSGFOG00000010569) #15	DDX1 (ENSGFOG00000010553) #16	MYCN (ENSGFOG00000010546) #17	CYRIA (ENSGFOG00000010538) #18	VSNL1 (ENSGFOG00000010531) #20	SMC6 (ENSGFOG00000010514) #21	GEN1 (ENSGFOG00000010501) #22	KCNS3 (ENSGFOG00000010498) #24	RDH14 (ENSGFOG00000010495) #25	NT5C1B (ENSGFOG00000010490) #26	OSR1 (ENSGFOG00000010486) #27	ENSGFOG00000010484	WDR35 (ENSGFOG00000010480) #29	MATN3 (ENSGFOG00000010458) #30	LAPTM4A (ENSGFOG00000010443) #31	ENSGFOG00000010430	SDC1 (ENSGFOG00000010416) #32	ENSGFOG00000010411 #33	PUM2 (ENSGFOG00000010379) #34	ENSGFOG00000010354 #35	RHOB (ENSGFOG00000010348) #36	HS1BP3 (ENSGFOG00000010343) #37
Flycatcher	MODERN SPECIES	21	SLC66A3 (ENSFALG00000024817) #7	ROCK2 (ENSFALG00000006707) #8	ENSFALG00000027375 #9	ENSFALG00000026316 #9	GREB1 (ENSFALG00000006718) #10	LPIN1 (ENSFALG00000006735) #12	TRIB2 (ENSFALG00000028332) #13	LRATD1 (ENSFALG00000015040) #14	NBAS (ENSFALG00000008699) #15	DDX1 (ENSFALG00000008696) #16	ENSFALG00000028783 #17	CYRIA (ENSFALG00000008685) #18	ENSFALG00000001832 #19	VSNL1 (ENSFALG00000027644) #20	SMC6 (ENSFALG00000001824) #21	GEN1 (ENSFALG00000027943) #22	MSGN1 (ENSFALG00000001820) #23	KCNS3 (ENSFALG00000014929) #24	RDH14 (ENSFALG00000014908) #25	NT5C1B (ENSFALG00000001786) #26	OSR1 (ENSFALG00000028520) #27	ENSFALG00000001780	TTC32 (ENSFALG00000001778) #28	WDR35 (ENSFALG00000001777) #29	MATN3 (ENSFALG00000025667) #30	LAPTM4A (ENSFALG00000001775) #31	ENSFALG00000021365	SDC1 (ENSFALG00000001773) #32	ENSFALG00000026224 #33	ENSFALG00000025154 #34	ENSFALG00000001759 #34
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432 #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000157581 #30	ENSGT00940000153446.b #31	ENSGT00940000180923	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #36
Golden eagle	MODERN SPECIES	6	ROCK2 (ENSACCG00020011682) #8	E2F6 (ENSACCG00020011591) #9	GREB1 (ENSACCG00020011499) #10	LPIN1 (ENSACCG00020011416) #12	TRIB2 (ENSACCG00020011397) #13	ENSACCG00020011382	ENSACCG00020011374	LRATD1 (ENSACCG00020011362) #14	NBAS (ENSACCG00020011318) #15	DDX1 (ENSACCG00020011276) #16	MYCN (ENSACCG00020011258) #17	CYRIA (ENSACCG00020011233) #18	ENSACCG00020011205 #19	VSNL1 (ENSACCG00020011201) #20	SMC6 (ENSACCG00020011179) #21	GEN1 (ENSACCG00020011155) #22	MSGN1 (ENSACCG00020011146) #23	KCNS3 (ENSACCG00020011140) #24	RDH14 (ENSACCG00020011134) #25	NT5C1B (ENSACCG00020011126) #26	OSR1 (ENSACCG00020011118) #27	ENSACCG00020011110	WDR35 (ENSACCG00020011082) #29	MATN3 (ENSACCG00020011023) #30	LAPTM4A (ENSACCG00020011001) #31	ENSACCG00020010982	SDC1 (ENSACCG00020010958) #32	ENSACCG00020010949	PUM2 (ENSACCG00020010910) #34	ENSACCG00020010869 #35	ENSACCG00020010855
Kakapo	MODERN SPECIES	23	C2orf50 (ENSSHBG00005007249)	SLC66A3 (ENSSHBG00005007268) #7	ENSSHBG00005007299 #8	ENSSHBG00005007333 #8	E2F6 (ENSSHBG00005007355) #9	GREB1 (ENSSHBG00005007448) #10	LPIN1 (ENSSHBG00005007857) #12	TRIB2 (ENSSHBG00005007893) #13	LRATD1 (ENSSHBG00005007911) #14	NBAS (ENSSHBG00005008111) #15	DDX1 (ENSSHBG00005009418) #16	MYCN (ENSSHBG00005009434) #17	CYRIA (ENSSHBG00005009457) #18	VSNL1 (ENSSHBG00005009485) #20	SMC6 (ENSSHBG00005009502) #21	ENSSHBG00005009523 #22	MSGN1 (ENSSHBG00005009540) #23	KCNS3 (ENSSHBG00005009545) #24	RDH14 (ENSSHBG00005009558) #25	NT5C1B (ENSSHBG00005009567) #26	OSR1 (ENSSHBG00005009574) #27	TTC32 (ENSSHBG00005009581) #28	WDR35 (ENSSHBG00005009592) #29	LAPTM4A (ENSSHBG00005009614) #31	ENSSHBG00005009640	SDC1 (ENSSHBG00005009652) #32	PUM2 (ENSSHBG00005009670) #34	ENSSHBG00005009714 #35	RHOB (ENSSHBG00005009806) #36	HS1BP3 (ENSSHBG00005009814) #37	GDF7 (ENSSHBG00005009832)
African ostrich	MODERN SPECIES	803													ENSSCUG00000012515 #19	VSNL1 (ENSSCUG00000012512) #20	SMC6 (ENSSCUG00000012506) #21	GEN1 (ENSSCUG00000012504) #22	KCNS3 (ENSSCUG00000012503) #24	RDH14 (ENSSCUG00000012496) #25	NT5C1B (ENSSCUG00000012495) #26
Australian saltwater crocodile	MODERN SPECIES	38	ENSCPRG00005006542	ROCK2 (ENSCPRG00005006216) #8	ENSCPRG00005006100 #9	GREB1 (ENSCPRG00005006077) #10	LPIN1 (ENSCPRG00005005996) #12	TRIB2 (ENSCPRG00005005953) #13	ENSCPRG00005005922	NBAS (ENSCPRG00005005782) #15	DDX1 (ENSCPRG00005005666) #16	MYCN (ENSCPRG00005005639) #17	CYRIA (ENSCPRG00005005582) #18	ENSCPRG00005005559 #19	VSNL1 (ENSCPRG00005005557) #20	ENSCPRG00005005504 #21	ENSCPRG00005005424 #21	GEN1 (ENSCPRG00005005337) #22	MSGN1 (ENSCPRG00005005322) #23	KCNS3 (ENSCPRG00005005307) #24	RDH14 (ENSCPRG00005005281) #25	NT5C1B (ENSCPRG00005005265) #26	ENSCPRG00005005234	OSR1 (ENSCPRG00005005214) #27	TTC32 (ENSCPRG00005005187) #28	WDR35 (ENSCPRG00005005160) #29	MATN3 (ENSCPRG00005005148) #30	LAPTM4A (ENSCPRG00005005092) #31	SDC1 (ENSCPRG00005005072) #32	PUM2 (ENSCPRG00005005047) #34	ENSCPRG00005004993 #35	ENSCPRG00005004985	RHOB (ENSCPRG00005004980) #36
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.jb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000177852	ENSGT00940000162520.d #35	ENSGT00950000182945.b.a.a.b.b.b #36
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219.a #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.jb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000177852	ENSGT00940000162520.d #35	ENSGT00940000164003
Emydidae	ANCESTRAL SPECIES	8	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219.a #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.jb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000163503.B	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00940000165918	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000153446.b.s #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000162520.d #35	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #36
painted turtle	MODERN SPECIES	2390	KCNF1 (ENSCPBG00000014030)	C2orf50 (ENSCPBG00000014027)	SLC66A3 (ENSCPBG00000014025) #7	ROCK2 (ENSCPBG00000014009) #8	E2F6 (ENSCPBG00000014007) #9	GREB1 (ENSCPBG00000014004) #10	LPIN1 (ENSCPBG00000014000) #12	TRIB2 (ENSCPBG00000013994) #13	LRATD1 (ENSCPBG00000013990) #14	NBAS (ENSCPBG00000013977) #15	DDX1 (ENSCPBG00000013330) #16	ENSCPBG00000013321 #17	CYRIA (ENSCPBG00000013312) #18	VSNL1 (ENSCPBG00000013304) #20	SMC6 (ENSCPBG00000013302) #21	GEN1 (ENSCPBG00000013299) #22	MSGN1 (ENSCPBG00000013298) #23	ENSCPBG00000013295	KCNS3 (ENSCPBG00000013292) #24	RDH14 (ENSCPBG00000013290) #25	NT5C1B (ENSCPBG00000013288) #26	ENSCPBG00000013282	OSR1 (ENSCPBG00000013280) #27
Three-toed box turtle	MODERN SPECIES	15	C2orf50 (ENSTMTG00000002318)	ROCK2 (ENSTMTG00000002325) #8	E2F6 (ENSTMTG00000002335) #9	GREB1 (ENSTMTG00000002344) #10	ENSTMTG00000002372	LPIN1 (ENSTMTG00000002382) #12	TRIB2 (ENSTMTG00000002404) #13	LRATD1 (ENSTMTG00000002408) #14	NBAS (ENSTMTG00000002506) #15	DDX1 (ENSTMTG00000003436) #16	ENSTMTG00000003512 #17	CYRIA (ENSTMTG00000003533) #18	RAD51AP2 (ENSTMTG00000003579) #19	VSNL1 (ENSTMTG00000003601) #20	SMC6 (ENSTMTG00000003697) #21	GEN1 (ENSTMTG00000004477) #22	MSGN1 (ENSTMTG00000004516) #23	KCNS3 (ENSTMTG00000004528) #24	RDH14 (ENSTMTG00000004538) #25	NT5C1B (ENSTMTG00000004549) #26	ENSTMTG00000005639	OSR1 (ENSTMTG00000005645) #27	ENSTMTG00000005663	TTC32 (ENSTMTG00000005737) #28	WDR35 (ENSTMTG00000005747) #29	ENSTMTG00000005813 #31	SDC1 (ENSTMTG00000005833) #32	PUM2 (ENSTMTG00000005851) #34	ENSTMTG00000005951 #35	ENSTMTG00000006051	RHOB (ENSTMTG00000006061) #36
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00940000154459.B	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT00940000157219.a #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.jb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #24	ENSGT00940000160181 #25	ENSGT00390000017767.b.a #26	ENSGT00940000158993 #27	ENSGT00390000011905 #28	ENSGT00940000155745 #29	ENSGT00940000153446.b #31	ENSGT00940000161171 #32	ENSGT00940000157575 #34	ENSGT00940000177852	ENSGT00940000162520.d #35	ENSGT00940000164003	ENSGT00950000182945.b.a.a.b.b.b #36	ENSGT00390000013092 #37
Goode s thornscrub tortoise	MODERN SPECIES	17	ROCK2 (ENSGEVG00005007467) #8	E2F6 (ENSGEVG00005007439) #9	GREB1 (ENSGEVG00005007324) #10	LPIN1 (ENSGEVG00005007279) #12	ENSGEVG00005007261	TRIB2 (ENSGEVG00005007232) #13	LRATD1 (ENSGEVG00005007216) #14	ENSGEVG00005007207	NBAS (ENSGEVG00005006521) #15	DDX1 (ENSGEVG00005006272) #16	ENSGEVG00005006200 #17	CYRIA (ENSGEVG00005006179) #18	RAD51AP2 (ENSGEVG00005006144) #19	VSNL1 (ENSGEVG00005006120) #20	SMC6 (ENSGEVG00005006087) #21	GEN1 (ENSGEVG00005006047) #22	MSGN1 (ENSGEVG00005006020) #23	KCNS3 (ENSGEVG00005006009) #24	RDH14 (ENSGEVG00005005984) #25	NT5C1B (ENSGEVG00005005960) #26	OSR1 (ENSGEVG00005005926) #27	TTC32 (ENSGEVG00005005918) #28	WDR35 (ENSGEVG00005005855) #29	LAPTM4A (ENSGEVG00005005801) #31	ENSGEVG00005005777 #32	PUM2 (ENSGEVG00005005679) #34	ENSGEVG00005005576 #35	ENSGEVG00005005556	RHOB (ENSGEVG00005005543) #36	HS1BP3 (ENSGEVG00005005524) #37	ENSGEVG00005005503
Abingdon island giant tortoise	MODERN SPECIES	335													RAD51AP2 (ENSCABG00000003740) #19	VSNL1 (ENSCABG00000003727) #20	SMC6 (ENSCABG00000001660) #21	ENSCABG00000001600 #22
Chinese turtle	MODERN SPECIES	2214								ENSPSIG00000012297 #15	DDX1 (ENSPSIG00000012292) #16	MYCN (ENSPSIG00000012289) #17	CYRIA (ENSPSIG00000012167) #18	ENSPSIG00000012137 #19	ENSPSIG00000001849	VSNL1 (ENSPSIG00000012117) #20	SMC6 (ENSPSIG00000012096) #21	GEN1 (ENSPSIG00000011938) #22	MSGN1 (ENSPSIG00000001846) #23	ENSPSIG00000011815	KCNS3 (ENSPSIG00000001843) #24	RDH14 (ENSPSIG00000001840) #25	NT5C1B (ENSPSIG00000011766) #26	OSR1 (ENSPSIG00000011751) #27	ENSPSIG00000011721	TTC32 (ENSPSIG00000011713) #28	WDR35 (ENSPSIG00000011703) #29	LAPTM4A (ENSPSIG00000011641) #31	SDC1 (ENSPSIG00000011638) #32	PUM2 (ENSPSIG00000011626) #34	ENSPSIG00000011571 #35	ENSPSIG00000001835	RHOB (ENSPSIG00000011554) #36