Murinae	ANCESTRAL SPECIES	8	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #26	ENSGT00940000160181 #27	ENSGT00390000017767.b.a #28	ENSGT00940000158993 #29	ENSGT00390000011905 #30	ENSGT00940000155745 #31	ENSGT00940000157581 #32	ENSGT00940000153446.b #33	ENSGT00940000161171 #34	ENSGT00940000157575 #35	ENSGT00940000162520.d #36	ENSGT00950000182945.b.a.a.b.b.b #37	ENSGT00390000013092	ENSGT00940000160140.b
Mus	ANCESTRAL SPECIES	10	ENSGT00940000153916.B #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #26	ENSGT00940000160181 #27	ENSGT00390000017767.b.a #28	ENSGT00940000158993 #29	ENSGT00390000011905 #30	ENSGT00940000155745 #31	ENSGT00940000157581 #32	ENSGT00940000153446.b #33	ENSGT00940000161171 #34	ENSGT00940000157575 #35	ENSGT00940000162520.d #36	ENSGT00950000182945.b.a.a.b.b.b #37	ENSGT00390000013092	ENSGT00940000160140.b
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #26	ENSGT00940000160181 #27	ENSGT00390000017767.b.a #28	ENSGT00940000158993 #29	ENSGT00390000011905 #30	ENSGT00940000155745 #31	ENSGT00940000157581 #32	ENSGT00940000153446.b #33	ENSGT00940000161171 #34	ENSGT00940000157575 #35	ENSGT00940000162520.d #36	ENSGT00950000182945.b.a.a.b.b.b #37	ENSGT00390000013092	ENSGT00940000160140.b
Ryukyu mouse	MODERN SPECIES	3	MGP_CAROLIEiJ_G0017631 #7	Rock2 (MGP_CAROLIEiJ_G0017630) #8	MGP_CAROLIEiJ_G0017629 #9	Greb1 (MGP_CAROLIEiJ_G0017628) #10	Ntsr2 (MGP_CAROLIEiJ_G0017627) #11	Lpin1 (MGP_CAROLIEiJ_G0017626) #12	Trib2 (MGP_CAROLIEiJ_G0017625) #13	Lratd1 (MGP_CAROLIEiJ_G0017624) #14	Nbas (MGP_CAROLIEiJ_G0017623) #15	Ddx1 (MGP_CAROLIEiJ_G0017622) #16	Mycn (MGP_CAROLIEiJ_G0017621) #17	Cyria (MGP_CAROLIEiJ_G0017620) #18	Rad51ap2 (MGP_CAROLIEiJ_G0017619) #19	Vsnl1 (MGP_CAROLIEiJ_G0017618) #20	Smc6 (MGP_CAROLIEiJ_G0017617) #21	Gen1 (MGP_CAROLIEiJ_G0017616) #22	Msgn1 (MGP_CAROLIEiJ_G0017615) #23	MGP_CAROLIEiJ_G0017614 #24	Vmn1r200 (MGP_CAROLIEiJ_G0017613) #25	Kcns3 (MGP_CAROLIEiJ_G0017612) #26	Rdh14 (MGP_CAROLIEiJ_G0017611) #27	Nt5c1b (MGP_CAROLIEiJ_G0017610) #28	Osr1 (MGP_CAROLIEiJ_G0017609) #29	Ttc32 (MGP_CAROLIEiJ_G0017608) #30	Wdr35 (MGP_CAROLIEiJ_G0017607) #31	Matn3 (MGP_CAROLIEiJ_G0017606) #32	MGP_CAROLIEiJ_G0017605 #33	Sdc1 (MGP_CAROLIEiJ_G0017604) #34	Pum2 (MGP_CAROLIEiJ_G0017603) #35	Slc7a15 (MGP_CAROLIEiJ_G0017602) #36	Rhob (MGP_CAROLIEiJ_G0017601) #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #26	ENSGT00940000160181 #27	ENSGT00390000017767.b.a #28	ENSGT00940000158993 #29	ENSGT00390000011905 #30	ENSGT00940000155745 #31	ENSGT00940000157581 #32	ENSGT00940000153446.b #33	ENSGT00940000161171 #34	ENSGT00940000157575 #35	ENSGT00940000162520.d #36	ENSGT00950000182945.b.a.a.b.b.b #37	ENSGT00390000013092	ENSGT00940000160140.b
Mouse	MODERN SPECIES	3	Pqlc3 (ENSMUSG00000045679) #7	Rock2 (ENSMUSG00000020580) #8	E2f6 (ENSMUSG00000057469) #9	Greb1 (ENSMUSG00000036523) #10	Ntsr2 (ENSMUSG00000020591) #11	Lpin1 (ENSMUSG00000020593) #12	Trib2 (ENSMUSG00000020601) #13	Lratd1 (ENSMUSG00000020607) #14	Nbas (ENSMUSG00000020576) #15	Ddx1 (ENSMUSG00000037149) #16	Mycn (ENSMUSG00000037169) #17	Cyria (ENSMUSG00000020589) #18	Rad51ap2 (ENSMUSG00000086022) #19	Vsnl1 (ENSMUSG00000054459) #20	Smc6 (ENSMUSG00000020608) #21	Gen1 (ENSMUSG00000051235) #22	Msgn1 (ENSMUSG00000047002) #23	Kcns3 (ENSMUSG00000043673) #26	Rdh14 (ENSMUSG00000020621) #27	Nt5c1b (ENSMUSG00000020622) #28	Osr1 (ENSMUSG00000048387) #29	Ttc32 (ENSMUSG00000066637) #30	Wdr35 (ENSMUSG00000066643) #31	Matn3 (ENSMUSG00000020583) #32	Laptm4a (ENSMUSG00000020585) #33	Sdc1 (ENSMUSG00000020592) #34	Pum2 (ENSMUSG00000020594) #35	Slc7a15 (ENSMUSG00000020600) #36	Rhob (ENSMUSG00000054364) #37	Hs1bp3 (ENSMUSG00000020605)	Gdf7 (ENSMUSG00000037660)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000153916.B.c #7	ENSGT01030000234517.D #8	ENSGT00940000155734 #9	ENSGT00390000008041.C #10	ENSGT01100000263518.A.a.a.b #11	ENSGT00940000157219 #12	ENSGT00950000182986.a.b.a #13	ENSGT00940000161165 #14	ENSGT00390000012474 #15	ENSGT00940000155678 #16	ENSGT00940000158432.bb.a #17	ENSGT00390000015159.a.b #18	ENSGT00470000042500 #19	ENSGT00940000156513 #20	ENSGT00550000074816.A.a #21	ENSGT00940000159266 #22	ENSGT00530000063712.a.b #23	ENSGT00940000155979 #26	ENSGT00940000160181 #27	ENSGT00390000017767.b.a #28	ENSGT00940000158993 #29	ENSGT00390000011905 #30	ENSGT00940000155745 #31	ENSGT00940000157581 #32	ENSGT00940000153446.b #33	ENSGT00940000161171 #34	ENSGT00940000157575 #35	ENSGT00940000162520.d #36	ENSGT00950000182945.b.a.a.b.b.b #37	ENSGT00390000013092	ENSGT00940000160140.b
Steppe mouse	MODERN SPECIES	66														Vsnl1 (ENSMSIG00000003607) #20	Smc6 (ENSMSIG00000003533) #21	Gen1 (ENSMSIG00000003465) #22	Msgn1 (ENSMSIG00000003441) #23	Kcns3 (ENSMSIG00000003427) #26
spretus	MODERN SPECIES	3	MGP_SPRETEiJ_G0018473 #7	Rock2 (MGP_SPRETEiJ_G0018472) #8	E2f6 (MGP_SPRETEiJ_G0018471) #9	Greb1 (MGP_SPRETEiJ_G0018470) #10	Ntsr2 (MGP_SPRETEiJ_G0018469) #11	Lpin1 (MGP_SPRETEiJ_G0018468) #12	Trib2 (MGP_SPRETEiJ_G0018467) #13	Lratd1 (MGP_SPRETEiJ_G0018466) #14	Nbas (MGP_SPRETEiJ_G0018465) #15	Ddx1 (MGP_SPRETEiJ_G0018464) #16	Mycn (MGP_SPRETEiJ_G0018463) #17	Cyria (MGP_SPRETEiJ_G0018462) #18	Rad51ap2 (MGP_SPRETEiJ_G0018461) #19	Vsnl1 (MGP_SPRETEiJ_G0018460) #20	Smc6 (MGP_SPRETEiJ_G0018459) #21	Gen1 (MGP_SPRETEiJ_G0018458) #22	Msgn1 (MGP_SPRETEiJ_G0018457) #23	Kcns3 (MGP_SPRETEiJ_G0018456) #26	Rdh14 (MGP_SPRETEiJ_G0018455) #27	Nt5c1b (MGP_SPRETEiJ_G0018454) #28	Osr1 (MGP_SPRETEiJ_G0018453) #29	Ttc32 (MGP_SPRETEiJ_G0018452) #30	Wdr35 (MGP_SPRETEiJ_G0018451) #31	Matn3 (MGP_SPRETEiJ_G0018450) #32	MGP_SPRETEiJ_G0018449 #33	Sdc1 (MGP_SPRETEiJ_G0018448) #34	Pum2 (MGP_SPRETEiJ_G0018447) #35	Slc7a15 (MGP_SPRETEiJ_G0018446) #36	Rhob (MGP_SPRETEiJ_G0018445) #37	Hs1bp3 (MGP_SPRETEiJ_G0018444)	Gdf7 (MGP_SPRETEiJ_G0018443)
Shrew mouse	MODERN SPECIES	20	Rock2 (MGP_PahariEiJ_G0029387) #8	MGP_PahariEiJ_G0029386	E2f6 (MGP_PahariEiJ_G0029385) #9	Greb1 (MGP_PahariEiJ_G0029384) #10	MGP_PahariEiJ_G0029383 #11	Lpin1 (MGP_PahariEiJ_G0029382) #12	Trib2 (MGP_PahariEiJ_G0029381) #13	Lratd1 (MGP_PahariEiJ_G0029380) #14	Nbas (MGP_PahariEiJ_G0029379) #15	Ddx1 (MGP_PahariEiJ_G0029378) #16	Mycn (MGP_PahariEiJ_G0029377) #17	Cyria (MGP_PahariEiJ_G0029376) #18	Rad51ap2 (MGP_PahariEiJ_G0029375) #19	Vsnl1 (MGP_PahariEiJ_G0029374) #20	Smc6 (MGP_PahariEiJ_G0029373) #21	Gen1 (MGP_PahariEiJ_G0029372) #22	Msgn1 (MGP_PahariEiJ_G0029371) #23	Kcns3 (MGP_PahariEiJ_G0029370) #26	Rdh14 (MGP_PahariEiJ_G0029369) #27	Nt5c1b (MGP_PahariEiJ_G0029368) #28	Osr1 (MGP_PahariEiJ_G0029367) #29	Ttc32 (MGP_PahariEiJ_G0029366) #30	Wdr35 (MGP_PahariEiJ_G0029365) #31	Matn3 (MGP_PahariEiJ_G0029364) #32	MGP_PahariEiJ_G0029363 #33	Sdc1 (MGP_PahariEiJ_G0029362) #34	Pum2 (MGP_PahariEiJ_G0029361) #35	Slc7a15 (MGP_PahariEiJ_G0029360) #36	Rhob (MGP_PahariEiJ_G0029359) #37	Hs1bp3 (MGP_PahariEiJ_G0029358)	Gdf7 (MGP_PahariEiJ_G0029357)
Rat	MODERN SPECIES	16	Greb1 (ENSRNOG00000024651) #10	Ntsr2 (ENSRNOG00000049054) #11	Lpin1 (ENSRNOG00000004377) #12	Trib2 (ENSRNOG00000004110) #13	Lratd1 (ENSRNOG00000004084) #14	Nbas (ENSRNOG00000024503) #15	Ddx1 (ENSRNOG00000006652) #16	ENSRNOG00000064235	Mycn (ENSRNOG00000051372) #17	LOC100360357 (ENSRNOG00000065320)	Cyria (ENSRNOG00000052758) #18	AABR07072562.1 (ENSRNOG00000050653)	Rad51ap2 (ENSRNOG00000049271) #19	Vsnl1 (ENSRNOG00000005345) #20	Smc6 (ENSRNOG00000004908) #21	Gen1 (ENSRNOG00000004667) #22	Msgn1 (ENSRNOG00000028518) #23	Kcns3 (ENSRNOG00000004899) #26	Rdh14 (ENSRNOG00000039551) #27	Nt5c1b (ENSRNOG00000004296) #28	Osr1 (ENSRNOG00000004210) #29	Ttc32 (ENSRNOG00000049088) #30	Wdr35 (ENSRNOG00000028783) #31	Matn3 (ENSRNOG00000056141) #32	Laptm4a (ENSRNOG00000006865) #33	Sdc1 (ENSRNOG00000059947) #34	Pum2 (ENSRNOG00000006180) #35	Slc7a15 (ENSRNOG00000006119) #36	Hs1bp3 (ENSRNOG00000006062)	Gdf7 (ENSRNOG00000006046)	Ldah (ENSRNOG00000021475)