Euteleostomi	ANCESTRAL SPECIES	54	ENSGT00530000063631.a	ENSGT00390000010779.b	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00940000156500
Actinopterygii	ANCESTRAL SPECIES	155	ENSGT00940000165060	ENSGT00940000177109	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00940000156500	ENSGT00510000051337	ENSGT00390000004886
Neopterygii	ANCESTRAL SPECIES	215						ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00940000156500	ENSGT00510000051337	ENSGT00940000158302.e	ENSGT00390000004886
Osteoglossocephalai	ANCESTRAL SPECIES	112	ENSGT00400000024940	ENSGT00390000003774.b ##12	ENSGT00390000003774.a.a.c ##12	ENSGT00940000157616.j.a ##13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000159286.b	ENSGT00390000014772.k ##17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00510000051337	ENSGT00940000167743	ENSGT00390000004886	ENSGT00940000153979.B	ENSGT00940000166686	ENSGT00940000166857
Clupeocephala	ANCESTRAL SPECIES	253	ENSGT01100000263484.B.b.b.a.b	ENSGT00530000063880.b.f	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000183051.a.a.b #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015
Euteleosteomorpha	ANCESTRAL SPECIES	58	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00940000155141.w.b	ENSGT00940000182276	ENSGT00920000149172 #22
Acanthomorphata	ANCESTRAL SPECIES	52	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484
Euacanthomorphacea	ANCESTRAL SPECIES	28	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00390000012832	ENSGT00390000001827	ENSGT01030000234610.a.a	ENSGT01030000234610.a.b	ENSGT00390000009168	ENSGT00940000156772.a	ENSGT00940000166924	ENSGT01050000244950.a.a.b	ENSGT00940000158416.q.a	ENSGT00940000157284.cb.a	ENSGT00390000008751.a.fb	ENSGT00390000001960	ENSGT00940000157390
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT01100000263583 #37
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000013999.d.a.a	ENSGT00390000013999.d.a.b.a	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.a.b.b	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Climbing perch	MODERN SPECIES	7	emc2 (ENSATEG00000024606) #7	eif3ea (ENSATEG00000024601) #8	RSPO2 (ENSATEG00000024596) #9	ENSATEG00000024559 #10	ENSATEG00000026390 #11	ENSATEG00000024535 #12	ENSATEG00000024530 #13	SALL3 (ENSATEG00000024524) #14	ENSATEG00000024518 #15	ENSATEG00000024516 #16	mbpb (ENSATEG00000029962) #17	ENSATEG00000024514 #18	ZNF236 (ENSATEG00000024503) #19	ZNF516 (ENSATEG00000024498) #20	TSHZ1 (ENSATEG00000024496) #21	ZADH2 (ENSATEG00000026716) #22	ZNF407 (ENSATEG00000027498) #23	HAS2 (ENSATEG00000028491) #24	DERL1 (ENSATEG00000024484) #25	TBC1D31 (ENSATEG00000024481) #26	C8orf76 (ENSATEG00000026045) #27	ENSATEG00000024466 #28	ENSATEG00000024472 #29	ZHX1 (ENSATEG00000024460) #30	ATAD2 (ENSATEG00000024449) #31	ENSATEG00000024447 #32	mrpl32 (ENSATEG00000024446) #33	ENSATEG00000028820 #34	ENSATEG00000025846 #35	ENSATEG00000024442 #36	ENSATEG00000024438 #37
Siamese fighting fish	MODERN SPECIES	7	emc2 (ENSBSLG00000018354) #7	eif3ea (ENSBSLG00000018187) #8	RSPO2 (ENSBSLG00000018091) #9	ENSBSLG00000017188 #10	zgc:91890 (ENSBSLG00000017068) #12	NFATC1 (ENSBSLG00000016980) #13	SALL3 (ENSBSLG00000016957) #14	DEPDC1B (ENSBSLG00000016719) #15	ENSBSLG00000016614 #16	mbpb (ENSBSLG00000016573) #17	ENSBSLG00000015703 #17	ENSBSLG00000015692	ZNF236 (ENSBSLG00000015433) #19	ENSBSLG00000015414 #20	TSHZ1 (ENSBSLG00000015393) #21	PTGR3 (ENSBSLG00000015383) #22	ZNF407 (ENSBSLG00000015316) #23	has2 (ENSBSLG00000015290) #24	zhx2a (ENSBSLG00000015173) ##30	derl1 (ENSBSLG00000014913) #25	TBC1D31 (ENSBSLG00000014752) #26	ENSBSLG00000014738	zgc:101716 (ENSBSLG00000014717) #27	ENSBSLG00000014703 #28	ENSBSLG00000014654	ENSBSLG00000014427 #28	ENSBSLG00000014126 #28	ZHX1 (ENSBSLG00000026534) #30	ATAD2 (ENSBSLG00000026522) #31	psma2a (ENSBSLG00000026492) #32	mrpl32 (ENSBSLG00000026490) #33
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000001786 ##8	RSPO2 (ENSMAMG00000001654) #9	ENSMAMG00000025300	ENSMAMG00000001487 #10	ENSMAMG00000027680 #11	ENSMAMG00000001388 #12	ENSMAMG00000001326 #13	SALL3 (ENSMAMG00000001276) #14	ENSMAMG00000001237 #15	ENSMAMG00000027481 #16	mbpb (ENSMAMG00000001207) #17	ENSMAMG00000001184 #17	ZNF236 (ENSMAMG00000001157) #19	ZNF516 (ENSMAMG00000026383) #20	TSHZ1 (ENSMAMG00000001047) #21	ZADH2 (ENSMAMG00000001030) #22	ZNF407 (ENSMAMG00000027526) #23	HAS2 (ENSMAMG00000028371) #24	DERL1 (ENSMAMG00000000906) #25	TBC1D31 (ENSMAMG00000000834) #26	FAM83A (ENSMAMG00000028236)	C8orf76 (ENSMAMG00000000792) #27	ZHX1 (ENSMAMG00000000778) #30	ATAD2 (ENSMAMG00000000712) #31	ENSMAMG00000000647 #32	mrpl32 (ENSMAMG00000000634) #33	ENSMAMG00000026399 #35	ENSMAMG00000000526 #36	ENSMAMG00000000501 #37	ENSMAMG00000000475	ENSMAMG00000000442
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000159045 #11	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Seriola	ANCESTRAL SPECIES	16	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000155824.A	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Greater amberjack	MODERN SPECIES	75	ENSSDUG00000010777 #10	ENSSDUG00000010997	ENSSDUG00000011007	ENSSDUG00000011018	ENSSDUG00000011038	zgc:91890 (ENSSDUG00000011053) #12	NFATC1 (ENSSDUG00000011072) #13	SALL3 (ENSSDUG00000011099) #14	ENSSDUG00000011118 #15	ENSSDUG00000011140 #16	mbpb (ENSSDUG00000011147) #17	ENSSDUG00000011160	ZNF236 (ENSSDUG00000011170) #19	ZNF516 (ENSSDUG00000011214) #20	TSHZ1 (ENSSDUG00000011260) #21	PTGR3 (ENSSDUG00000011282) #22	ENSSDUG00000011297 #23	has2 (ENSSDUG00000011316) #24	zhx2a (ENSSDUG00000011335) ##30	derl1 (ENSSDUG00000011365) #25	TBC1D31 (ENSSDUG00000011396) #26	FAM83A (ENSSDUG00000011491)	zgc:101716 (ENSSDUG00000011504) #27	ENSSDUG00000011512 #28	ZHX1 (ENSSDUG00000011542) #30	ENSSDUG00000011569	psma2a (ENSSDUG00000011656) #32	mrpl32 (ENSSDUG00000011693) #33	ENSSDUG00000011711 #34	ccdc127a (ENSSDUG00000011724) #35	sdha (ENSSDUG00000011732) #36
Yellowtail amberjack	MODERN SPECIES	2851	ENSSLDG00000012522 #10	ENSSLDG00000012597	ENSSLDG00000012615	ENSSLDG00000012630	zgc:91890 (ENSSLDG00000012649) #12	NFATC1 (ENSSLDG00000012672) #13	SALL3 (ENSSLDG00000012706) #14	ENSSLDG00000012724	ENSSLDG00000012747 #15	ENSSLDG00000012769 #16	mbpb (ENSSLDG00000012778) #17	ENSSLDG00000012795 #17	ZNF236 (ENSSLDG00000012821) #19	ZNF516 (ENSSLDG00000012905) #20	TSHZ1 (ENSSLDG00000012961) #21	PTGR3 (ENSSLDG00000012982) #22	ENSSLDG00000012995	ENSSLDG00000013008 #23	has2 (ENSSLDG00000013021) #24	zhx2a (ENSSLDG00000013041) ##30	derl1 (ENSSLDG00000013068) #25	TBC1D31 (ENSSLDG00000013128) #26	zgc:101716 (ENSSLDG00000013266) #27	ENSSLDG00000013283 #28	ZHX1 (ENSSLDG00000013310) #30	ATAD2 (ENSSLDG00000013335) #31	psma2a (ENSSLDG00000013476) #32	mrpl32 (ENSSLDG00000013498) #33	ENSSLDG00000013512 #34	ccdc127a (ENSSLDG00000013524) #35	sdha (ENSSLDG00000013543) #36
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010016179	ENSLCAG00010016182	ENSLCAG00010016233 #10	ENSLCAG00010016318	ENSLCAG00010016323 #11	zgc:91890 (ENSLCAG00010016332) #12	NFATC1 (ENSLCAG00010016338) #13	SALL3 (ENSLCAG00010016342) #14	ENSLCAG00010016350 #15	ENSLCAG00010016353 #16	mbpb (ENSLCAG00010016355) #17	ENSLCAG00010016373	ENSLCAG00010016390	ENSLCAG00010016416 #20	TSHZ1 (ENSLCAG00010016421) #21	PTGR3 (ENSLCAG00010016422) #22	ENSLCAG00010016423 #23	has2 (ENSLCAG00010016427) #24	zhx2a (ENSLCAG00010016430) ##30	derl1 (ENSLCAG00010016433) #25	TBC1D31 (ENSLCAG00010016444) #26	zgc:101716 (ENSLCAG00010016458) #27	ENSLCAG00010016462 #29	ENSLCAG00010016464 #28	ZHX1 (ENSLCAG00010016468) #30	ATAD2 (ENSLCAG00010016506) #31	psma2a (ENSLCAG00010016628) #32	mrpl32 (ENSLCAG00010016635) #33	ENSLCAG00010016641 #34	ccdc127a (ENSLCAG00010016648) #35	sdha (ENSLCAG00010016668) #36
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00390000017590	ENSGT00940000166866	ENSGT00940000155008.C	ENSGT00940000159045 #11	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT00940000166706	ENSGT01100000263583 #37	ENSGT01030000235509
Turbot	MODERN SPECIES		ENSSMAG00000035251	ENSSMAG00000007821 #10	ENSSMAG00000007751	ENSSMAG00000033884 #11	zgc:91890 (ENSSMAG00000007719) #12	ENSSMAG00000007713 #13	SALL3 (ENSSMAG00000007674) #14	ENSSMAG00000007665 #15	ENSSMAG00000007656	mbpb (ENSSMAG00000007650) #17	ENSSMAG00000028315	ENSSMAG00000007561 #19	ENSSMAG00000035057 #19	ENSSMAG00000032527 #19	ENSSMAG00000007495 #20	PTGR3 (ENSSMAG00000032552) #22	TSHZ1 (ENSSMAG00000007487) #21	ENSSMAG00000007470	ENSSMAG00000007455 #23	HAS2 (ENSSMAG00000007441) #24	DERL1 (ENSSMAG00000007383) #25	TBC1D31 (ENSSMAG00000007306) #26	C8orf76 (ENSSMAG00000007260) #27	ZHX1 (ENSSMAG00000007251) #30	ATAD2 (ENSSMAG00000007172) #31	ENSSMAG00000007148 #32	mrpl32 (ENSSMAG00000027043) #33	ENSSMAG00000037042 #35	ENSSMAG00000007060 #36	ENSSMAG00000032484	fxyd3 (ENSSMAG00000007009) #37
Tongue sole	MODERN SPECIES	4	ENSCSEG00000011780	MEGF8 (ENSCSEG00000011714)	ENSCSEG00000011696	ENSCSEG00000011688	ENSCSEG00000011682	ENSCSEG00000011664	ENSCSEG00000011656	cd79a (ENSCSEG00000011649)	ENSCSEG00000011642	TMEM145 (ENSCSEG00000011635)	mbpb (ENSCSEG00000011627) #17	ENSCSEG00000011620	ZNF236 (ENSCSEG00000011586) #19	ZNF516 (ENSCSEG00000011543) #20	TSHZ1 (ENSCSEG00000011537) #21	PTGR3 (ENSCSEG00000011531) #22	ENSCSEG00000011518 #23	has2 (ENSCSEG00000011505) #24	zhx2a (ENSCSEG00000011495) ##30	derl1 (ENSCSEG00000011481) #25	TBC1D31 (ENSCSEG00000011462) #26	sdha (ENSCSEG00000011447) #36	ENSCSEG00000011437	ccdc127a (ENSCSEG00000011398) #35	mrpl32 (ENSCSEG00000011393) #33	psma2a (ENSCSEG00000011383) #32	ENSCSEG00000011370 #31	ZHX1 (ENSCSEG00000011363) #30	zgc:101716 (ENSCSEG00000011357) #27	si:dkey-33i11.9 (ENSCSEG00000011355)	fxyd3 (ENSCSEG00000011348) #37
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000013999.d.a.b.b	ENSGT00390000013999.d.a.b.a	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.b	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT01010000222294.c.b.b.a.a.b.a.a.f.b	ENSGT00920000149572	ENSGT00940000159697
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	23	eny2 (ENSTNIG00000006884)	TRHR (ENSTNIG00000006885)	TMEM74 (ENSTNIG00000006886)	emc2 (ENSTNIG00000015445) #7	eif3ea (ENSTNIG00000015446) #8	ENSTNIG00000001615	ENSTNIG00000000298	PLEC (ENSTNIG00000019064) #11	zgc:91890 (ENSTNIG00000019065) #12	SALL3 (ENSTNIG00000001257) #14	DEPDC1B (ENSTNIG00000019066) #15	ENSTNIG00000019067 #16	mbpb (ENSTNIG00000019068) #17	ENSTNIG00000019069	TSHZ1 (ENSTNIG00000019070) #21	PTGR3 (ENSTNIG00000019071) #22	ENSTNIG00000019072 #23	has2 (ENSTNIG00000019073) #24	zhx2a (ENSTNIG00000019074) ##30	derl1 (ENSTNIG00000019075) #25	TBC1D31 (ENSTNIG00000019076) #26	FAM83A (ENSTNIG00000019077)	C8orf76 (ENSTNIG00000019078) #27	ZHX1 (ENSTNIG00000019079) #30	ATAD2 (ENSTNIG00000019080) #31	psma2a (ENSTNIG00000019081) #32	ccdc127a (ENSTNIG00000019082) #35	sdha (ENSTNIG00000019083) #36	ENSTNIG00000001049	ENSTNIG00000019084	hpn (ENSTNIG00000019085)
Tetraodon	MODERN SPECIES	26	DBX1 (ENSTNIG00000004855)	ckap5 (ENSTNIG00000004854)	cstpp1 (ENSTNIG00000004853)	mapk8ip1a (ENSTNIG00000004852)	cry2 (ENSTNIG00000004851)	cry2 (ENSTNIG00000004850)	trhr2 (ENSTNIG00000004849)	ENSTNIG00000004848	coch (ENSTNIG00000004843)	ehd4 (ENSTNIG00000004842)	foxg1a (ENSTNIG00000004841)	egr2b (ENSTNIG00000004834)	adoa (ENSTNIG00000004833)	ENSTNIG00000004832	egr2b (ENSTNIG00000004831)	PTGR3 (ENSTNIG00000004830) #22	ENSTNIG00000004829	ENSTNIG00000004828	ENSTNIG00000004827	atp1b2a (ENSTNIG00000004825)	ENSTNIG00000004824	ENSTNIG00000004812	ENSTNIG00000004811	cdc42se1 (ENSTNIG00000000249)	cdc42se1 (ENSTNIG00000001155)	gabpb2a (ENSTNIG00000004810)	ENSTNIG00000004809	ENSTNIG00000004789	mmd (ENSTNIG00000004787)	eif4g1a (ENSTNIG00000004781)	CLCN2 (ENSTNIG00000004780)
Fugu	MODERN SPECIES	19	eif3ea (ENSTRUG00000005064) #8	RSPO2 (ENSTRUG00000005463) #9	ENSTRUG00000021531	ENSTRUG00000000220	ENSTRUG00000003715 #10	zgc:91890 (ENSTRUG00000019817) #12	NFATC1 (ENSTRUG00000022286) #13	SALL3 (ENSTRUG00000027801) #14	ENSTRUG00000017436 #15	ENSTRUG00000017445 #16	ENSTRUG00000022186 #17	mbpb (ENSTRUG00000026841) #17	ZNF236 (ENSTRUG00000017456) #19	ENSTRUG00000017489 #20	TSHZ1 (ENSTRUG00000017496) #21	PTGR3 (ENSTRUG00000031863) #22	scx (ENSTRUG00000017355)	gapdhs (ENSTRUG00000017358)	tmem147 (ENSTRUG00000020274)	sult2st3 (ENSTRUG00000017363)	ENSTRUG00000017365	ENSTRUG00000001349	ccka (ENSTRUG00000033262)	TRAK1 (ENSTRUG00000002103)	ENSTRUG00000023730	ENSTRUG00000028523	ENSTRUG00000021550	ctnnb1 (ENSTRUG00000003520)	ENSTRUG00000022817	ENSTRUG00000021515	ENSTRUG00000004209
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000013999.d.a.b.b	ENSGT00390000013999.d.a.b.a	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Ballan wrasse	MODERN SPECIES	3	ENSLBEG00000004683	ENSLBEG00000004779 #10	ENSLBEG00000004960	ENSLBEG00000004980	ENSLBEG00000005016	zgc:91890 (ENSLBEG00000005044) #12	NFATC1 (ENSLBEG00000005083) #13	SALL3 (ENSLBEG00000005152) #14	DEPDC1B (ENSLBEG00000005181) #15	ENSLBEG00000005212 #16	mbpb (ENSLBEG00000005225) #17	ENSLBEG00000005263 #17	ZNF236 (ENSLBEG00000005307) #19	ZNF516 (ENSLBEG00000005411) #20	TSHZ1 (ENSLBEG00000005456) #21	PTGR3 (ENSLBEG00000005501) #22	ENSLBEG00000005532 #23	has2 (ENSLBEG00000005565) #24	zhx2a (ENSLBEG00000005624) ##30	derl1 (ENSLBEG00000005782) #25	ENSLBEG00000005808 #26	ENSLBEG00000005843 #26	zgc:101716 (ENSLBEG00000005896) #27	ZHX1 (ENSLBEG00000005916) #30	ATAD2 (ENSLBEG00000005948) #31	psma2a (ENSLBEG00000006026) #32	mrpl32 (ENSLBEG00000006081) #33	ENSLBEG00000006096 #34	ccdc127a (ENSLBEG00000006108) #35	sdha (ENSLBEG00000006135) #36	si:ch73-343g19.4 (ENSLBEG00000006205)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000159194 #9	ENSGT00390000013999.d.a.b.b	ENSGT00390000013999.d.a.b.a	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.a.a	ENSGT00390000013999.d.b	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT00940000166706	ENSGT01100000263583 #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.b	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT00940000166706	ENSGT01100000263583 #37
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005007529	ENSLCRG00005007474	ENSLCRG00005005822 #10	ENSLCRG00005005456	ENSLCRG00005005420 #11	zgc:91890 (ENSLCRG00005005410) #12	NFATC1 (ENSLCRG00005005375) #13	SALL3 (ENSLCRG00005005357) #14	DEPDC1B (ENSLCRG00005005312) #15	ENSLCRG00005005302	mbpb (ENSLCRG00005005301) #17	ENSLCRG00005005295 #17	ZNF236 (ENSLCRG00005005186) #19	ZNF516 (ENSLCRG00005005125) #20	TSHZ1 (ENSLCRG00005005117) #21	PTGR3 (ENSLCRG00005005110) #22	ZNF407 (ENSLCRG00005005095) #23	has2 (ENSLCRG00005005085) #24	derl1 (ENSLCRG00005005072) #25	TBC1D31 (ENSLCRG00005004896) #26	ENSLCRG00005004755	zgc:101716 (ENSLCRG00005004735) #27	ZHX1 (ENSLCRG00005004718) #30	ATAD2 (ENSLCRG00005004451) #31	psma2b (ENSLCRG00005004262) #32	mrpl32 (ENSLCRG00005004249) #33	ENSLCRG00005004243 #34	ccdc127a (ENSLCRG00005004227) #35	sdha (ENSLCRG00005003634) #36	si:dkey-33i11.9 (ENSLCRG00005003542)	ENSLCRG00005003516 #37
European seabass	MODERN SPECIES	6	ENSDLAG00005028074	ENSDLAG00005005252	ENSDLAG00005003460 #10	ENSDLAG00005003301	ENSDLAG00005003196 #11	zgc:91890 (ENSDLAG00005003171) #12	ENSDLAG00005003066 #13	SALL3 (ENSDLAG00005003049) #14	ENSDLAG00005002679 #15	ENSDLAG00005002612 #16	mbpb (ENSDLAG00005002579) #17	ENSDLAG00005002464 #17	ZNF236 (ENSDLAG00005002377) #19	ENSDLAG00005002358 #20	TSHZ1 (ENSDLAG00005002351) #21	PTGR3 (ENSDLAG00005002338) #22	ZNF407 (ENSDLAG00005002307) #23	HAS2 (ENSDLAG00005002291) #24	DERL1 (ENSDLAG00005002260) #25	TBC1D31 (ENSDLAG00005002126) #26	FAM83A (ENSDLAG00005002086)	C8orf76 (ENSDLAG00005002061) #27	ZHX1 (ENSDLAG00005002050) #30	ENSDLAG00005001780	ENSDLAG00005001650 #32	ENSDLAG00005030144 #33	ENSDLAG00005001628 #34	ENSDLAG00005034650 #35	ENSDLAG00005001080 #36	ENSDLAG00005031378	ENSDLAG00005033997 #37
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010015968	ENSSAUG00010015975	ENSSAUG00010015977	ENSSAUG00010015979	ENSSAUG00010015994 #10	ENSSAUG00010016681 #11	zgc:91890 (ENSSAUG00010016683) #12	NFATC1 (ENSSAUG00010016688) #13	SALL3 (ENSSAUG00010016703) #14	DEPDC1B (ENSSAUG00010016706) #15	ENSSAUG00010016739 #16	mbpb (ENSSAUG00010016740) #17	ENSSAUG00010016741	ZNF236 (ENSSAUG00010016745) #19	TSHZ1 (ENSSAUG00010016751) #21	PTGR3 (ENSSAUG00010016752) #22	ZNF407 (ENSSAUG00010016759) #23	has2 (ENSSAUG00010016774) #24	TBC1D31 (ENSSAUG00010016780) #26	derl1 (ENSSAUG00010018207) #25	zgc:101716 (ENSSAUG00010014589) #27	ZHX1 (ENSSAUG00010014591) #30	ATAD2 (ENSSAUG00010014600) #31	psma2a (ENSSAUG00010014669) #32	mrpl32 (ENSSAUG00010014679) #33	ENSSAUG00010014681 #34	ccdc127a (ENSSAUG00010014684) #35	SDHA (ENSSAUG00010014692) #36	ENSSAUG00010015370	fxyd3 (ENSSAUG00010015371) #37	ENSSAUG00010015372
Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.a.b.a	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.a.b.a	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Pike perch	MODERN SPECIES	49	RSPO2 (ENSSLUG00000008119) #9	ENSSLUG00000008104	ENSSLUG00000008093	ENSSLUG00000004118 #10	ENSSLUG00000003848	ENSSLUG00000003835 #11	zgc:91890 (ENSSLUG00000003826) #12	NFATC1 (ENSSLUG00000003792) #13	SALL3 (ENSSLUG00000003778) #14	ENSSLUG00000003765 #15	ENSSLUG00000003750 #16	ENSSLUG00000003726	ZNF236 (ENSSLUG00000003697) #19	ZNF516 (ENSSLUG00000003679) #20	TSHZ1 (ENSSLUG00000003672) #21	PTGR3 (ENSSLUG00000003664) #22	ZNF407 (ENSSLUG00000003564) #23	has2 (ENSSLUG00000003536) #24	zhx2a (ENSSLUG00000003522) ##30	derl1 (ENSSLUG00000003510) #25	TBC1D31 (ENSSLUG00000002658) #26	zgc:101716 (ENSSLUG00000002584) #27	ENSSLUG00000002581 #29	ZHX1 (ENSSLUG00000002574) #30	ATAD2 (ENSSLUG00000002496) #31	psma2a (ENSSLUG00000002462) #32	mrpl32 (ENSSLUG00000002454) #33	ENSSLUG00000002447 #34	ccdc127a (ENSSLUG00000002441) #35	sdha (ENSSLUG00000001847) #36	fxyd3 (ENSSLUG00000001559) #37
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000011496	ENSCGOG00000011476	ENSCGOG00000011463	ENSCGOG00000010803 #10	ENSCGOG00000010784	zgc:91890 (ENSCGOG00000010774) #12	NFATC1 (ENSCGOG00000010565) #13	SALL3 (ENSCGOG00000010552) #14	ENSCGOG00000010478 #15	ENSCGOG00000010470 #16	mbpb (ENSCGOG00000010467) #17	ENSCGOG00000010464 #17	ZNF236 (ENSCGOG00000010384) #19	ZNF516 (ENSCGOG00000010376) #20	TSHZ1 (ENSCGOG00000010369) #21	PTGR3 (ENSCGOG00000010363) #22	ZNF407 (ENSCGOG00000010298) #23	has2 (ENSCGOG00000010289) #24	zhx2a (ENSCGOG00000010286) ##30	derl1 (ENSCGOG00000010284) #25	FAM83A (ENSCGOG00000010281)	C8orf76 (ENSCGOG00000010280) #27	ZHX1 (ENSCGOG00000010279) #30	ENSCGOG00000010027	psma2a (ENSCGOG00000009400) #32	mrpl32 (ENSCGOG00000009365) #33	ENSCGOG00000009356 #34	ccdc127a (ENSCGOG00000009353) #35	sdha (ENSCGOG00000008272) #36	fxyd3 (ENSCGOG00000008241) #37	ENSCGOG00000008229
Cottioidei	ANCESTRAL SPECIES	29	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.a.b.a	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT01050000248023	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT00940000166706
Lumpfish	MODERN SPECIES	17	ENSCLMG00005014627	ENSCLMG00005014670 #10	ENSCLMG00005018212	ENSCLMG00005018213	ENSCLMG00005018215 #11	zgc:91890 (ENSCLMG00005018216) #12	NFATC1 (ENSCLMG00005018219) #13	SALL3 (ENSCLMG00005018222) #14	DEPDC1B (ENSCLMG00005018248) #15	ENSCLMG00005018257 #16	mbpb (ENSCLMG00005018258) #17	ENSCLMG00005018259 #17	ZNF236 (ENSCLMG00005018262) #19	ZNF516 (ENSCLMG00005018293) #20	TSHZ1 (ENSCLMG00005018294) #21	PTGR3 (ENSCLMG00005018295) #22	has2 (ENSCLMG00005018296) #24	TBC1D31 (ENSCLMG00005018300) #26	derl1 (ENSCLMG00005018788) #25	C8orf76 (ENSCLMG00005018791) #27	ENSCLMG00005018792	ZHX1 (ENSCLMG00005018793) #30	ATAD2 (ENSCLMG00005018794) #31	psma2a (ENSCLMG00005018920) #32	mrpl32 (ENSCLMG00005018922) #33	ENSCLMG00005018923 #34	ccdc127a (ENSCLMG00005018925) #35	sdha (ENSCLMG00005018927) #36	ENSCLMG00005018956	ENSCLMG00005018958	ENSCLMG00005018960
Stickleback	MODERN SPECIES	19	ENSGACG00000005429	ENSGACG00000005431 #10	ENSGACG00000005460	ENSGACG00000005467	ENSGACG00000005471	zgc:91890 (ENSGACG00000005476) #12	NFATC1 (ENSGACG00000005481) #13	SALL3 (ENSGACG00000005503) #14	DEPDC1B (ENSGACG00000005507) #15	ENSGACG00000005535	mbpb (ENSGACG00000005544) #17	ENSGACG00000005547	ZNF236 (ENSGACG00000005553) #19	ZNF516 (ENSGACG00000005587) #20	TSHZ1 (ENSGACG00000005592) #21	PTGR3 (ENSGACG00000005597) #22	ENSGACG00000005600 #23	has2 (ENSGACG00000005603) #24	zhx2a (ENSGACG00000005611) ##30	derl1 (ENSGACG00000005615) #25	TBC1D31 (ENSGACG00000005646) #26	ENSGACG00000005666	C8orf76 (ENSGACG00000005669) #27	ENSGACG00000005677	ZHX1 (ENSGACG00000005679) #30	ATAD2 (ENSGACG00000005685) #31	psma2a (ENSGACG00000005705) #32	mrpl32 (ENSGACG00000005754) #33	ccdc127a (ENSGACG00000005756) #35	sdha (ENSGACG00000005763) #36	ENSGACG00000005836
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Pomacentridae	ANCESTRAL SPECIES	23	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT00940000166706	ENSGT01100000263583 #37
Pomacentridae_A	ANCESTRAL SPECIES	6	ENSGT00390000003465.b.b.a	ENSGT01090000260061.c.a.d.b.b	ENSGT00940000160311.a.b	ENSGT00760000119766	ENSGT00390000005869.a	ENSGT00870000136537	ENSGT00950000182940.b.a.b.a.b	ENSGT00940000155176.o.b	ENSGT00940000166429	ENSGT00940000154996.a.a.b	ENSGT00390000017503	ENSGT00940000158438.m	ENSGT01030000234534.B.a.a.b	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT01100000263583 #37	ENSGT01070000253873
Amphiprion	ANCESTRAL SPECIES	54													ENSGT01030000234534.B.a.a.b	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00390000011435 #27	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36	ENSGT01100000263583 #37	ENSGT01070000253873
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000019531	ENSAPEG00000019400 #10	ENSAPEG00000019363	ENSAPEG00000019341	zgc:91890 (ENSAPEG00000019331) #12	NFATC1 (ENSAPEG00000019297) #13	SALL3 (ENSAPEG00000019278) #14	ENSAPEG00000019208 #15	ENSAPEG00000019191 #16	mbpb (ENSAPEG00000019165) #17	ENSAPEG00000019146 #17	ENSAPEG00000019130	ZNF236 (ENSAPEG00000019026) #19	ENSAPEG00000019004 #20	TSHZ1 (ENSAPEG00000018993) #21	PTGR3 (ENSAPEG00000018939) #22	ENSAPEG00000018919 #23	has2 (ENSAPEG00000018869) #24	zhx2a (ENSAPEG00000018836) ##30	derl1 (ENSAPEG00000018795) #25	TBC1D31 (ENSAPEG00000018694) #26	zgc:101716 (ENSAPEG00000018673) #27	ZHX1 (ENSAPEG00000018556) #30	ATAD2 (ENSAPEG00000018408) #31	psma2a (ENSAPEG00000018372) #32	mrpl32 (ENSAPEG00000018363) #33	ENSAPEG00000018353 #34	ccdc127a (ENSAPEG00000018336) #35	sdha (ENSAPEG00000018278) #36	fxyd3 (ENSAPEG00000018264) #37	ENSAPEG00000018254
Clown anemonefish	MODERN SPECIES	1552															TSHZ1 (ENSAOCG00000002522) #21	PTGR3 (ENSAOCG00000022184) #22
Spiny chromis	MODERN SPECIES	67											mbpb (ENSAPOG00000005138) #17	ENSAPOG00000005125 #17	ZNF236 (ENSAPOG00000005097) #19	ZNF516 (ENSAPOG00000005020) #20	TSHZ1 (ENSAPOG00000004985) #21	PTGR3 (ENSAPOG00000004979) #22	ENSAPOG00000004966 #23	has2 (ENSAPOG00000004929) #24	zhx2a (ENSAPOG00000004868) ##30	derl1 (ENSAPOG00000004846) #25	TBC1D31 (ENSAPOG00000004809) #26	C8orf76 (ENSAPOG00000004771) #27	ZHX1 (ENSAPOG00000004741) #30	ENSAPOG00000004705 #31	psma2a (ENSAPOG00000004666) #32	mrpl32 (ENSAPOG00000004637) #33	ENSAPOG00000004627 #34	ccdc127a (ENSAPOG00000004614) #35	sdha (ENSAPOG00000004596) #36	fxyd3 (ENSAPOG00000004572) #37	ENSAPOG00000004560
Bicolor damselfish	MODERN SPECIES	558															TSHZ1 (ENSSPAG00000016227) #21	PTGR3 (ENSSPAG00000016213) #22	ENSSPAG00000016199 #23	has2 (ENSSPAG00000016159) #24
Cichlidae	ANCESTRAL SPECIES	26	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417.e #29	ENSGT00940000179624	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000179624	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00940000171417.f #29	ENSGT00390000011435 #27	ENSGT00940000179624	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Burton s mouthbrooder	MODERN SPECIES	500								DEPDC1B (ENSHBUG00000009678) #15	ENSHBUG00000009695 #16	mbpb (ENSHBUG00000009709) #17	ENSHBUG00000009733 #17	ZNF236 (ENSHBUG00000009837) #19	ZNF516 (ENSHBUG00000009867) #20	ENSHBUG00000009880	TSHZ1 (ENSHBUG00000009890) #21	PTGR3 (ENSHBUG00000009910) #22	ENSHBUG00000009934 #23	has2 (ENSHBUG00000000253) #24	ENSHBUG00000009971	zhx2a (ENSHBUG00000009980) ##30	derl1 (ENSHBUG00000010019) #25	TBC1D31 (ENSHBUG00000010039) #26	ENSHBUG00000010049	ENSHBUG00000010061 #29
Haplochromini_A	ANCESTRAL SPECIES	30	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00940000171417.f #29	ENSGT00390000011435 #27	ENSGT00940000179624	ENSGT00940000171417.e #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34
P. nyererei	MODERN SPECIES	424	ENSPNYG00000012480 #10	ENSPNYG00000012665	ENSPNYG00000012692	ENSPNYG00000012708	ENSPNYG00000012721	zgc:91890 (ENSPNYG00000012741) #12	NFATC1 (ENSPNYG00000012750) #13	SALL3 (ENSPNYG00000012783) #14	DEPDC1B (ENSPNYG00000012802) #15	ENSPNYG00000012830 #16	mbpb (ENSPNYG00000012837) #17	ENSPNYG00000012847	ZNF236 (ENSPNYG00000012877) #19	ENSPNYG00000013034 #20	TSHZ1 (ENSPNYG00000013049) #21	PTGR3 (ENSPNYG00000013068) #22	ENSPNYG00000013080 #23	has2 (ENSPNYG00000013108) #24	zhx2a (ENSPNYG00000013128) ##30	derl1 (ENSPNYG00000013197) #25	TBC1D31 (ENSPNYG00000013234) #26	zgc:101716 (ENSPNYG00000013341) #27	ENSPNYG00000013426 #29	ENSPNYG00000013441	ZHX1 (ENSPNYG00000013472) #30	ATAD2 (ENSPNYG00000013510) #31	psma2a (ENSPNYG00000013602) #32	mrpl32 (ENSPNYG00000013630) #33	ENSPNYG00000013660 #34	ccdc127a (ENSPNYG00000013648) #35	sdha (ENSPNYG00000013682) #36
Haplochromini_B	ANCESTRAL SPECIES	42	ENSGT00390000013999.d.a.b.a.b.a	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000157017.b #16	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00940000171417.f #29	ENSGT00390000011435 #27	ENSGT00940000179624	ENSGT00940000171417.e #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34
Eastern happy	MODERN SPECIES	2	ENSACLG00000022563	ENSACLG00000022550	zgc:91890 (ENSACLG00000022531) #12	NFATC1 (ENSACLG00000022509) #13	SALL3 (ENSACLG00000022451) #14	DEPDC1B (ENSACLG00000022370) #15	ENSACLG00000022353 #16	mbpb (ENSACLG00000022337) #17	ENSACLG00000022319 #17	ENSACLG00000022316	ENSACLG00000022312 #19	ENSACLG00000022305 #19	ENSACLG00000022287 #19	ENSACLG00000022267 #20	TSHZ1 (ENSACLG00000022251) #21	PTGR3 (ENSACLG00000022230) #22	ENSACLG00000022191 #23	has2 (ENSACLG00000022166) #24	zhx2a (ENSACLG00000022125) ##30	derl1 (ENSACLG00000022063) #25	TBC1D31 (ENSACLG00000022036) #26	ENSACLG00000022018	ENSACLG00000022004 #29	ENSACLG00000021992 #29	ENSACLG00000021981 #29	C8orf76 (ENSACLG00000021945) #27	ENSACLG00000021884	ENSACLG00000021876 #29	ZHX1 (ENSACLG00000021858) #30	ATAD2 (ENSACLG00000021719) #31	psma2a (ENSACLG00000021687) #32
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005007838	ENSMZEG00005007736 #10	ENSMZEG00005007693	ENSMZEG00005007683	ENSMZEG00005007669	zgc:91890 (ENSMZEG00005007658) #12	NFATC1 (ENSMZEG00005007616) #13	SALL3 (ENSMZEG00005007586) #14	DEPDC1B (ENSMZEG00005007566) #15	ENSMZEG00005007536 #16	mbpb (ENSMZEG00005007521) #17	ENSMZEG00005007492 #17	ZNF236 (ENSMZEG00005007366) #19	ENSMZEG00005007330 #20	TSHZ1 (ENSMZEG00005007316) #21	PTGR3 (ENSMZEG00005007295) #22	ENSMZEG00005007263 #23	has2 (ENSMZEG00005007246) #24	zhx2a (ENSMZEG00005007229) ##30	derl1 (ENSMZEG00005007203) #25	TBC1D31 (ENSMZEG00005007177) #26	C8orf76 (ENSMZEG00005007153) #27	ENSMZEG00005007135	ZHX1 (ENSMZEG00005007125) #30	ATAD2 (ENSMZEG00005007015) #31	psma2a (ENSMZEG00005006983) #32	mrpl32 (ENSMZEG00005006966) #33	ccdc127a (ENSMZEG00005006958) #35	ENSMZEG00005006953 #34	sdha (ENSMZEG00005006913) #36	ENSMZEG00005006889
Lyretail cichlid	MODERN SPECIES	324	ENSNBRG00000008848	ENSNBRG00000008867	ENSNBRG00000008890	ENSNBRG00000008902	zgc:91890 (ENSNBRG00000008932) #12	NFATC1 (ENSNBRG00000008942) #13	SALL3 (ENSNBRG00000008974) #14	DEPDC1B (ENSNBRG00000008993) #15	ENSNBRG00000009024 #16	mbpb (ENSNBRG00000009037) #17	ENSNBRG00000009052 #17	ZNF236 (ENSNBRG00000009075) #19	ZNF516 (ENSNBRG00000009162) #20	TSHZ1 (ENSNBRG00000009195) #21	ENSNBRG00000009208	PTGR3 (ENSNBRG00000009215) #22	ENSNBRG00000009231 #23	has2 (ENSNBRG00000009264) #24	zhx2a (ENSNBRG00000009329) ##30	derl1 (ENSNBRG00000009418) #25	ENSNBRG00000009468 #26	ENSNBRG00000009496 #26	ZHX1 (ENSNBRG00000009527) #30	ATAD2 (ENSNBRG00000009567) #31	psma2a (ENSNBRG00000009619) #32	mrpl32 (ENSNBRG00000009648) #33	ENSNBRG00000009666 #34	ccdc127a (ENSNBRG00000009658) #35	sdha (ENSNBRG00000009676) #36	ENSNBRG00000009724	fxyd3 (ENSNBRG00000009736) #37
Nile tilapia	MODERN SPECIES	2	ENSONIG00000034396 #10	ENSONIG00000029732	ENSONIG00000027609 #11	zgc:91890 (ENSONIG00000007310) #12	NFATC1 (ENSONIG00000007307) #13	SALL3 (ENSONIG00000028993) #14	DEPDC1B (ENSONIG00000040606) #15	ENSONIG00000042935	ENSONIG00000030715	ENSONIG00000007300 #16	mbpb (ENSONIG00000042836) #17	ENSONIG00000038569 #17	ZNF236 (ENSONIG00000007298) #19	ZNF516 (ENSONIG00000007296) #20	TSHZ1 (ENSONIG00000040112) #21	PTGR3 (ENSONIG00000007294) #22	ZNF407 (ENSONIG00000007293) #23	has2 (ENSONIG00000033734) #24	derl1 (ENSONIG00000007287) #25	TBC1D31 (ENSONIG00000007289) #26	ENSONIG00000029048	ENSONIG00000041908	ENSONIG00000007286 #29	zgc:101716 (ENSONIG00000007285) #27	ENSONIG00000033093 #29	ENSONIG00000035134	ZHX1 (ENSONIG00000033055) #30	ATAD2 (ENSONIG00000007281) #31	psma2a (ENSONIG00000007278) #32	mrpl32 (ENSONIG00000032508) #33	ENSONIG00000007275 #34
Midas cichlid	MODERN SPECIES	255	ENSACIG00000013806	ENSACIG00000013848 #10	ENSACIG00000013914	ENSACIG00000013943	ENSACIG00000013965	zgc:91890 (ENSACIG00000013981) #12	NFATC1 (ENSACIG00000013997) #13	SALL3 (ENSACIG00000014041) #14	ENSACIG00000014063 #15	ENSACIG00000014091 #16	mbpb (ENSACIG00000014099) #17	ENSACIG00000014106 #17	ZNF236 (ENSACIG00000014123) #19	ZNF516 (ENSACIG00000014197) #20	TSHZ1 (ENSACIG00000014213) #21	PTGR3 (ENSACIG00000014225) #22	ENSACIG00000014233 #23	has2 (ENSACIG00000014250) #24	ENSACIG00000014260
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00390000013999.d.b	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000171417 #29	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Aplocheiloidei	ANCESTRAL SPECIES	26	ENSGT00940000159194 #9	ENSGT00390000013999.d.b.e.a	ENSGT00390000013999.d.b.e.b	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Mangrove rivulus	MODERN SPECIES	14								DEPDC1B (ENSKMAG00000021842) #15	GALR1 (ENSKMAG00000021837)	mbpb (ENSKMAG00000021833) #17	ENSKMAG00000021830 #17	ZNF236 (ENSKMAG00000021817) #19	ENSKMAG00000021810 #20	ENSKMAG00000021801	TSHZ1 (ENSKMAG00000021795) #21	PTGR3 (ENSKMAG00000021790) #22	ENSKMAG00000021785	ENSKMAG00000021779 #23	has2 (ENSKMAG00000021775) #24	zhx2a (ENSKMAG00000021766) ##30	derl1 (ENSKMAG00000021758) #25	TBC1D31 (ENSKMAG00000021748) #26	ENSKMAG00000021716	zgc:101716 (ENSKMAG00000021701) #27	ENSKMAG00000021696 #29	ZHX1 (ENSKMAG00000021688) #30	ENSKMAG00000021659	psma2a (ENSKMAG00000021648) #32	mrpl32 (ENSKMAG00000021643) #33	ENSKMAG00000021638 #34	ccdc127a (ENSKMAG00000021633) #35
Turquoise killifish	MODERN SPECIES	1614	Nfu_g_1_016749 (ENSNFUG00015003814) #12	ENSNFUG00015003817	NFATC1 (ENSNFUG00015003822) #13	ENSNFUG00015003831	SALL3A (ENSNFUG00015003837) #14	ENSNFUG00015003842	DEPDC1B (ENSNFUG00015003849) #15	ENSNFUG00015003860	ENSNFUG00015003863	mbpb (ENSNFUG00015003865) #17	ENSNFUG00015003870 #17	ZNF236 (ENSNFUG00015003892) #19	ENSNFUG00015003939	ENSNFUG00015003943	TSHZ1 (ENSNFUG00015003945) #21	ZADH2 (ENSNFUG00015003950) #22	ZNF407 (ENSNFUG00015003955) #23	has2 (ENSNFUG00015003961) #24	ENSNFUG00015003965	TBC1D31 (ENSNFUG00015003980) #26	DERL1 (ENSNFUG00015004004) #25	ENSNFUG00015004008	C16H8ORF76 (ENSNFUG00015004010) #27	ENSNFUG00015004035 #28	ENSNFUG00015004074 #28	ZHX1 (ENSNFUG00015004078) #30	ATAD2 (ENSNFUG00015004103) #31	PSMA2 (ENSNFUG00015004157) #32	ENSNFUG00015004167	MRPL32 (ENSNFUG00015004170) #33	ENSNFUG00015004174 #34
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417 #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
NAME_4	ANCESTRAL SPECIES	42	ENSGT00940000159194 #9	ENSGT00940000179522	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27
Mummichog	MODERN SPECIES	2307	ENSFHEG00000000786 #10	ENSFHEG00000008650	ENSFHEG00000008635	ENSFHEG00000008614	zgc:91890 (ENSFHEG00000000209) #12	NFATC1 (ENSFHEG00000008540) #13	SALL3 (ENSFHEG00000008424) #14	ENSFHEG00000008352	DEPDC1B (ENSFHEG00000008341) #15	ENSFHEG00000008330	mbpb (ENSFHEG00000008317) #17	ENSFHEG00000008304 #17	ZNF236 (ENSFHEG00000008286) #19	ZNF516 (ENSFHEG00000008254) #20	TSHZ1 (ENSFHEG00000008236) #21	PTGR3 (ENSFHEG00000008229) #22	ENSFHEG00000008213 #23	has2 (ENSFHEG00000008195) #24
Sheepshead minnow	MODERN SPECIES	261									ENSCVAG00000018092	mbpb (ENSCVAG00000018096) #17	ENSCVAG00000018118 #17	ENSCVAG00000018127 #19	ENSCVAG00000018135 #19	ZNF516 (ENSCVAG00000018183) #20	TSHZ1 (ENSCVAG00000018205) #21	PTGR3 (ENSCVAG00000018216) #22	ENSCVAG00000018247 #23	has2 (ENSCVAG00000018260) #24	zhx2a (ENSCVAG00000018275) ##30	derl1 (ENSCVAG00000018315) #25	ENSCVAG00000018326	TBC1D31 (ENSCVAG00000018405) #26	zgc:101716 (ENSCVAG00000018416) #27
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417.a.b #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
Poecilia	ANCESTRAL SPECIES		ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00940000171417.a.b #29	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35
NAME_6	ANCESTRAL SPECIES	54	ENSGT00390000013999.d.b.e.a.b	ENSGT00390000013999.d.b.e.b	ENSGT00940000166022.d	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT00940000156787.g #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT00940000153859.b #26	ENSGT00940000160768	ENSGT00390000011435 #27	ENSGT00940000172126 #28	ENSGT00950000182893.a.a.a.a.b #30	ENSGT00550000074694.a.k #31	ENSGT00550000074870 #32	ENSGT00390000014996 #33	ENSGT00390000012014.A #34	ENSGT00390000008818 #35	ENSGT00910000144277 #36
Sailfin molly	MODERN SPECIES	3735																PTGR3 (ENSPLAG00000019288) #22
Amazon molly	MODERN SPECIES	252	eif3ea (ENSPFOG00000019233) #8	RSPO2 (ENSPFOG00000019230) #9	ENSPFOG00000024095	ENSPFOG00000023186	ENSPFOG00000019228	PLEC (ENSPFOG00000019175) #11	zgc:91890 (ENSPFOG00000019141) #12	NFATC1 (ENSPFOG00000019133) #13	SALL3 (ENSPFOG00000019127) #14	DEPDC1B (ENSPFOG00000019117) #15	GALR1 (ENSPFOG00000019111)	mbpb (ENSPFOG00000019109) #17	ZNF236 (ENSPFOG00000019091) #19	ZNF516 (ENSPFOG00000019083) #20	TSHZ1 (ENSPFOG00000019081) #21	PTGR3 (ENSPFOG00000019075) #22	ZNF407 (ENSPFOG00000019074) #23	has2 (ENSPFOG00000019071) #24	ENSPFOG00000019069 #28	ENSPFOG00000019066 #29	zhx2a (ENSPFOG00000019055) ##30	derl1 (ENSPFOG00000019049) #25	TBC1D31 (ENSPFOG00000019012) #26	ENSPFOG00000018996	zgc:101716 (ENSPFOG00000018992) #27	ENSPFOG00000018989 #28	ZHX1 (ENSPFOG00000018986) #30	ATAD2 (ENSPFOG00000018961) #31	psma2a (ENSPFOG00000018952) #32	mrpl32 (ENSPFOG00000018949) #33	ENSPFOG00000018947 #34
Guppy	MODERN SPECIES	446	ENSPREG00000014532	ENSPREG00000014518	ENSPREG00000014510	zgc:91890 (ENSPREG00000014495) #12	NFATC1 (ENSPREG00000014467) #13	ENSPREG00000014451	ENSPREG00000014432 #14	SALL3 (ENSPREG00000014420) #14	DEPDC1B (ENSPREG00000014400) #15	mbpb (ENSPREG00000014354) #17	ENSPREG00000014334 #17	ENSPREG00000014319	ZNF236 (ENSPREG00000014291) #19	ENSPREG00000014239 #20	TSHZ1 (ENSPREG00000014215) #21	PTGR3 (ENSPREG00000014202) #22	ENSPREG00000014191 #23	has2 (ENSPREG00000014148) #24	ENSPREG00000014139 #29	ENSPREG00000014133 #29	zhx2a (ENSPREG00000014120) ##30	derl1 (ENSPREG00000014096) #25	TBC1D31 (ENSPREG00000014065) #26	ENSPREG00000014048	zgc:101716 (ENSPREG00000014040) #27	ENSPREG00000014032 #29	ENSPREG00000014026 #29	ENSPREG00000014020 #28	ENSPREG00000014018 #29	ZHX1 (ENSPREG00000014000) #30	ATAD2 (ENSPREG00000013955) #31
Platyfish	MODERN SPECIES	17	ENSXMAG00000029046	ENSXMAG00000027720 #10	ENSXMAG00000026059	ENSXMAG00000029291	zgc:91890 (ENSXMAG00000009105) #12	NFATC1 (ENSXMAG00000009087) #13	SALL3 (ENSXMAG00000023447) #14	DEPDC1B (ENSXMAG00000009067) #15	ENSXMAG00000009054	mbpb (ENSXMAG00000009053) #17	ENSXMAG00000026401 #17	ENSXMAG00000029135	ZNF236 (ENSXMAG00000026111) #19	ZNF516 (ENSXMAG00000009031) #20	TSHZ1 (ENSXMAG00000027021) #21	PTGR3 (ENSXMAG00000009023) #22	ENSXMAG00000027759 #23	has2 (ENSXMAG00000009011) #24	zhx2a (ENSXMAG00000008999) ##30	derl1 (ENSXMAG00000008991) #25	TBC1D31 (ENSXMAG00000008980) #26	ENSXMAG00000025323	zgc:101716 (ENSXMAG00000008971) #27	ENSXMAG00000027666 #29	ZHX1 (ENSXMAG00000021203) #30	ATAD2 (ENSXMAG00000008949) #31	psma2a (ENSXMAG00000022157) #32	mrpl32 (ENSXMAG00000008933) #33	ENSXMAG00000008930 #34	ccdc127a (ENSXMAG00000021467) #35	sdha (ENSXMAG00000008900) #36
Oryzias	ANCESTRAL SPECIES	48	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT00940000156787.l #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT01020000230438.A.e.a.f
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00390000013999.d.b.d	ENSGT00390000013999.d.b.c	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT00940000156787.l #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT01020000230438.A.e.a.f	ENSGT00940000168692.e.b	ENSGT01020000230438.A.e.b	ENSGT00940000162287.C	ENSGT00940000164700.A	ENSGT00940000179005	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800
Indian medaka	MODERN SPECIES	467	ENSOMEG00000011458	ENSOMEG00000011449	zgc:91890 (ENSOMEG00000011432) #12	NFATC1 (ENSOMEG00000011409) #13	SALL3 (ENSOMEG00000011390) #14	ENSOMEG00000011373	DEPDC1B (ENSOMEG00000011343) #15	GALR1 (ENSOMEG00000011296)	mbpb (ENSOMEG00000011271) #17	ENSOMEG00000011212 #17	ENSOMEG00000011156 #19	ENSOMEG00000011124 #19	ZNF516 (ENSOMEG00000011053) #20	ENSOMEG00000010966	TSHZ1 (ENSOMEG00000010943) #21	PTGR3 (ENSOMEG00000010923) #22	ENSOMEG00000010905 #23	has2 (ENSOMEG00000010881) #24	zhx2a (ENSOMEG00000010852) ##30	derl1 (ENSOMEG00000000259) #25	ENSOMEG00000010760	ENSOMEG00000010749	ENSOMEG00000010733	ENSOMEG00000010715	ENSOMEG00000010701	ENSOMEG00000010689	ENSOMEG00000010664	prss1 (ENSOMEG00000010641)	ENSOMEG00000010605	zgc:66448 (ENSOMEG00000010575)	ENSOMEG00000000921
Javanese ricefish	MODERN SPECIES	7	RSPO2 (ENSOJAG00000010054) #9	ENSOJAG00000010115	hamp2 (ENSOJAG00000010151)	ENSOJAG00000010255 #10	ENSOJAG00000010510	ENSOJAG00000010541 #11	zgc:91890 (ENSOJAG00000010827) #12	NFATC1 (ENSOJAG00000010838) #13	SALL3 (ENSOJAG00000010844) #14	ENSOJAG00000010858 #15	ENSOJAG00000010908 #17	mbpb (ENSOJAG00000010933) #17	ENSOJAG00000011071	ENSOJAG00000011108 #20	TSHZ1 (ENSOJAG00000011125) #21	PTGR3 (ENSOJAG00000011175) #22	ZNF407 (ENSOJAG00000011517) #23	has2 (ENSOJAG00000011579) #24	zhx2a (ENSOJAG00000011599) ##30	derl1 (ENSOJAG00000011674) #25	ENSOJAG00000011680	ENSOJAG00000011684	ENSOJAG00000011718	ENSOJAG00000011770	ENSOJAG00000011784	ENSOJAG00000011816	prss1 (ENSOJAG00000011830)	ENSOJAG00000011932	ENSOJAG00000011939	ENSOJAG00000011951	ENSOJAG00000011960
Oryzias_a	ANCESTRAL SPECIES	38	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000155824.C.fc.l	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000182976.b.b #15	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT00940000156787.l #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000010337.B.a.b #24	ENSGT00950000182893.a.a.a.b.c ##30	ENSGT00530000063156.b #25	ENSGT01020000230438.A.e.a.f	ENSGT01020000230438.A.e.b	ENSGT00940000166443.d.b	ENSGT00940000181435	ENSGT00980000202586	ENSGT00940000164700.A	ENSGT01050000244883.A.a.a.b	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000155965.b	ENSGT00940000166443.d.a.b
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000029927	ENSORLG00000028039	zgc:91890 (ENSORLG00000020715) #12	ENSORLG00000020716 #13	SALL3 (ENSORLG00000020718) #14	ENSORLG00000025065	ENSORLG00000024127	ENSORLG00000025678	ENSORLG00000020724 #15	GALR1 (ENSORLG00000022653)	mbpb (ENSORLG00000020727) #17	ENSORLG00000030561 #19	ENSORLG00000029270 #19	ZNF516 (ENSORLG00000020731) #20	TSHZ1 (ENSORLG00000020732) #21	PTGR3 (ENSORLG00000023224) #22	ENSORLG00000020738 #23	has2 (ENSORLG00000024353) #24	ENSORLG00000026963	zhx2a (ENSORLG00000020740) ##30	derl1 (ENSORLG00000020742) #25	ENSORLG00000006293	ENSORLG00000020746	ENSORLG00000030637	ENSORLG00000028711	ENSORLG00000022478	ENSORLG00000022147	prss1 (ENSORLG00000013582)	ENSORLG00000029441	ENSORLG00000026463	ENSORLG00000026849
Chinese medaka	MODERN SPECIES	73										DEPDC1B (ENSOSIG00000021740) #15	ENSOSIG00000021768 #17	ENSOSIG00000021779 #19	ENSOSIG00000021793 #19	ZNF516 (ENSOSIG00000021797) #20	TSHZ1 (ENSOSIG00000021799) #21	PTGR3 (ENSOSIG00000021802) #22	ZNF407 (ENSOSIG00000021807) #23	has2 (ENSOSIG00000021819) #24	ENSOSIG00000021827	zhx2a (ENSOSIG00000021835) ##30	derl1 (ENSOSIG00000021844) #25	ENSOSIG00000021851	ENSOSIG00000021854	ENSOSIG00000021856	ENSOSIG00000021860	ENSOSIG00000021864	ENSOSIG00000021867	prss1 (ENSOSIG00000021871)	ENSOSIG00000021877	zgc:66448 (ENSOSIG00000021888)	ENSOSIG00000021890
Tiger tail seahorse	MODERN SPECIES	425	ENSHCOG00000010576 #10	ENSHCOG00000010500	ENSHCOG00000010488	ENSHCOG00000010475	zgc:91890 (ENSHCOG00000010457) #12	NFATC1 (ENSHCOG00000010450) #13	SALL3 (ENSHCOG00000010423) #14	DEPDC1B (ENSHCOG00000010373) #15	ENSHCOG00000010345 #16	mbpb (ENSHCOG00000010322) #17	ENSHCOG00000010309 #17	ZNF236 (ENSHCOG00000010282) #19	ZNF516 (ENSHCOG00000010219) #20	TSHZ1 (ENSHCOG00000010177) #21	ENSHCOG00000010166	PTGR3 (ENSHCOG00000010152) #22	ENSHCOG00000010149 #23	has2 (ENSHCOG00000010115) #24	zhx2a (ENSHCOG00000010067) ##30	derl1 (ENSHCOG00000010062) #25	ENSHCOG00000010028 #26	ENSHCOG00000010005 #26	zgc:101716 (ENSHCOG00000009978) #27	ZHX1 (ENSHCOG00000009971) #30	ATAD2 (ENSHCOG00000009954) #31	psma2a (ENSHCOG00000009873) #32	mrpl32 (ENSHCOG00000009839) #33	ccdc127a (ENSHCOG00000009822) #35	sdha (ENSHCOG00000009811) #36	fxyd3 (ENSHCOG00000009776) #37	ENSHCOG00000009764
Pinecone sodierfish	MODERN SPECIES	7	RSPO2 (ENSMMDG00005022762) #9	ENSMMDG00005022778 #10	ENSMMDG00005022792	ENSMMDG00005022793	ENSMMDG00005022796	ENSMMDG00005022797	zgc:91890 (ENSMMDG00005022798) #12	NFATC1 (ENSMMDG00005022799) #13	SALL3 (ENSMMDG00005022800) #14	ENSMMDG00005022802 #16	mbpb (ENSMMDG00005022804) #17	ENSMMDG00005022805 #17	ZNF236 (ENSMMDG00005022806) #19	ZNF516 (ENSMMDG00005022812) #20	TSHZ1 (ENSMMDG00005022813) #21	PTGR3 (ENSMMDG00005022815) #22	ZNF407 (ENSMMDG00005022816) #23	CNDP1 (ENSMMDG00005022820)	TCAIM (ENSMMDG00005022916)	cnot10 (ENSMMDG00005023045)	calhm6 (ENSMMDG00005023416)	calhm5.1 (ENSMMDG00005023417)	rwdd1 (ENSMMDG00005008279)	ENSMMDG00005008321	ENSMMDG00005009113	sult2st3 (ENSMMDG00005009114)	tmem147 (ENSMMDG00005009117)	ENSMMDG00005009120	gapdhs (ENSMMDG00005009131)	SCX (ENSMMDG00005009170)	ENSMMDG00005009173
Cod	MODERN SPECIES	2	TMEM74 (ENSGMOG00000006511)	emc2 (ENSGMOG00000006521) #7	RSPO2 (ENSGMOG00000026535) #9	ENSGMOG00000006545 #10	ENSGMOG00000034847	ENSGMOG00000032792	ENSGMOG00000022230	zgc:91890 (ENSGMOG00000006625) #12	NFATC1 (ENSGMOG00000006631) #13	SALL3 (ENSGMOG00000035951) #14	GALR1 (ENSGMOG00000018051)	ENSGMOG00000027182	ZNF236 (ENSGMOG00000006668) #19	ZNF516 (ENSGMOG00000025897) #20	TSHZ1 (ENSGMOG00000032771) #21	PTGR3 (ENSGMOG00000006772) #22	ENSGMOG00000006780 #23	calhm6 (ENSGMOG00000007041)	calhm5.1 (ENSGMOG00000007051)	rwdd1 (ENSGMOG00000009852)	ENSGMOG00000007067	zufsp (ENSGMOG00000007079)	kpna5 (ENSGMOG00000007147)	gprc6a (ENSGMOG00000007217)	ENSGMOG00000023864	ENSGMOG00000017396	RRP15 (ENSGMOG00000017385)	tgfb2 (ENSGMOG00000017371)	ENSGMOG00000024728	lyplal1 (ENSGMOG00000014091)	preb (ENSGMOG00000014062)
Protacanthopterygii	ANCESTRAL SPECIES	50	ENSGT00940000159194 #9	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00970000193390.c.b.b.a.l.a	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT00940000171486.A	ENSGT01000000219127	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000165779	ENSGT00940000159873	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c	ENSGT01060000249076	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.d	ENSGT00390000001745.a	ENSGT00510000054197
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	32	ENSGT00530000063880.b.f.d	ENSGT00390000011922.t #7	ENSGT00390000002661.b.ub.b.a.b ##8	ENSGT00940000159194.h #9	ENSGT00940000162855.a.a.a.a.d #10	ENSGT00970000193390.c.b.b.a.l.a.a	ENSGT00390000003774.a.a.d.a #12	ENSGT00940000157616.j.b.d #13	ENSGT00940000159356.a.a.f #14	ENSGT01050000244841.A.b.a.b.a.a.b	ENSGT00390000014772.l.mc.b #17	ENSGT00940000171486.A	ENSGT00940000156787.a #19	ENSGT00940000160839.e #20	ENSGT00950000183051.a.a.b.b #21	ENSGT00920000149172.c #22	ENSGT00940000156446.db.b #23	ENSGT00390000015719.c.c.d	ENSGT00390000016565.g.e	ENSGT01000000219127	ENSGT00970000193390.c.b.b.a.l.a.b	ENSGT00940000166468	ENSGT00390000003774.a.a.d.b #12	ENSGT00940000157616.j.b.c #13	ENSGT00940000159356.a.a.e #14	ENSGT01050000244841.A.b.a.b.a.a.a	ENSGT00390000014772.l.mc.a #17	ENSGT00940000156787.b #19	ENSGT00940000160839.f #20	ENSGT00950000183051.a.a.b.a #21	ENSGT00920000149172.d #22
Huchen	MODERN SPECIES	2202															TSHZ1 (ENSHHUG00000032641) #21	PTGR3 (ENSHHUG00000032642) #22	ENSHHUG00000032643	ENSHHUG00000032644 #23
Salmoninae_a	ANCESTRAL SPECIES	90	ENSGT00390000002661.b.ub.b.a.a.b.b ##8	ENSGT00940000159194.g #9	ENSGT00940000162855.a.a.a.a.c #10	ENSGT00940000161549.a.b.a	ENSGT00970000193390.c.b.b.a.l.a.b	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d.b #12	ENSGT00940000157616.j.b.c #13	ENSGT00940000159356.a.a.e #14	ENSGT01050000244841.A.b.a.b.a.a.a	ENSGT00390000014772.l.mc.a #17	ENSGT00940000171486.A.a	ENSGT00940000156787.a #19	ENSGT00940000160839.e #20	ENSGT00950000183051.a.a.b.b #21	ENSGT00920000149172.c #22	ENSGT00940000156446.db.b #23	ENSGT00390000015719.c.c.d	ENSGT00390000016565.g.e	ENSGT00940000154868.a.b.b.c	ENSGT00390000007371.f.d.a.b	ENSGT00950000182900.B.d	ENSGT00620000087993.a.b.j	ENSGT00960000191430
Salmo	ANCESTRAL SPECIES	32	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194.g #9	ENSGT00940000162855.a.a.a.a.c #10	ENSGT00940000161549.a.b.a	ENSGT00970000193390.c.b.b.a.l.a.b	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d.b #12	ENSGT00940000157616.j.b.c #13	ENSGT00940000159356.a.a.e #14	ENSGT01050000244841.A.b.a.b.a.a.a	ENSGT00390000014772.l.lc #17	ENSGT00940000171486.A.a	ENSGT00940000156787.a #19	ENSGT00940000160839.e #20	ENSGT00950000183051.a.a.b.b #21	ENSGT00920000149172.c #22	ENSGT00940000156446.db.b #23	ENSGT00390000015719.c.c.d	ENSGT00390000016565.g.e	ENSGT00940000154868.a.b.b.c	ENSGT00390000007371.f.d.a.b	ENSGT00950000182900.B.d	ENSGT00620000087993.a.b.j	ENSGT00940000165779.d	ENSGT00940000159873.i.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.b.b	ENSGT01060000249076	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.a	ENSGT00390000001745.a.a	ENSGT00510000054197.n	ENSGT00940000156036.nb
River trout	MODERN SPECIES	30	RSPO2 (ENSSTUG00000041112) #9	ENSSTUG00000039635 #10	ENSSTUG00000039608	ENSSTUG00000039604	ENSSTUG00000039579 #11	zgc:91890 (ENSSTUG00000039570) #12	NFATC1 (ENSSTUG00000039482) #13	SALL3 (ENSSTUG00000039470) #14	GALR1 (ENSSTUG00000039447)	mbpb (ENSSTUG00000039439) #17	ENSSTUG00000039434	ZNF236 (ENSSTUG00000039315) #19	ENSSTUG00000039306	ZNF516 (ENSSTUG00000039297) #20	TSHZ1 (ENSSTUG00000039293) #21	PTGR3 (ENSSTUG00000039286) #22	ENSSTUG00000039276	ENSSTUG00000039271	ZNF407 (ENSSTUG00000039259) #23	nr0b2a (ENSSTUG00000039248)	ENSSTUG00000039242	tpbgl (ENSSTUG00000039236)	tmem222a (ENSSTUG00000039221)	wdtc1 (ENSSTUG00000038906)	CEP85 (ENSSTUG00000038883)	cops7a (ENSSTUG00000038867)	cldc1 (ENSSTUG00000038854)	CD4-1 (ENSSTUG00000038833)	CD4-2a (ENSSTUG00000038814)	usp5 (ENSSTUG00000038671)	P3H3 (ENSSTUG00000038651)
Atlantic salmon	MODERN SPECIES	11	RSPO2 (ENSSSAG00000046933) #9	ENSSSAG00000038733 #10	ENSSSAG00000076982	ENSSSAG00000032530	ct054 (ENSSSAG00000076975) #12	NFATC1 (ENSSSAG00000076879) #13	SALL3 (ENSSSAG00000108951) #14	ENSSSAG00000098916	GALR1 (ENSSSAG00000033629)	mbpb (ENSSSAG00000076838) #17	ENSSSAG00000093220	ZNF236 (ENSSSAG00000076830) #19	ZNF516 (ENSSSAG00000076825) #20	ENSSSAG00000093355	TSHZ1 (ENSSSAG00000076821) #21	zadh2 (ENSSSAG00000076818) #22	ZNF407 (ENSSSAG00000085595) #23	nr0b2 (ENSSSAG00000076817)	ENSSSAG00000076816	tpbgl (ENSSSAG00000117301)	tmem222a (ENSSSAG00000076801)	wdtc1 (ENSSSAG00000076694)	ENSSSAG00000076685	si:ch211-154o6.3 (ENSSSAG00000076670)	csn7a (ENSSSAG00000076662)	C209E (ENSSSAG00000076658)	ENSSSAG00000076652	cd4-1 (ENSSSAG00000076631)	ENSSSAG00000076595	usp5 (ENSSSAG00000076540)	ENSSSAG00000076532
Oncorhynchus	ANCESTRAL SPECIES	95						ENSGT00940000166468	ENSGT00390000003774.a.a.d.b #12	ENSGT00940000157616.j.b.c #13	ENSGT00940000159356.a.a.e #14	ENSGT01050000244841.A.b.a.b.a.a.a	ENSGT00390000014772.l.mc.a #17	ENSGT00940000171486.A.a	ENSGT00940000156787.a #19	ENSGT00940000160839.e #20	ENSGT00950000183051.a.a.b.b #21	ENSGT00920000149172.c #22	ENSGT00940000156446.db.b #23	ENSGT00390000015719.c.c.d	ENSGT00390000016565.g.e	ENSGT00940000154868.a.b.b.c	ENSGT00390000007371.f.d.a.b	ENSGT00950000182900.B.d	ENSGT00620000087993.a.b.j	ENSGT00960000191430	ENSGT00990000211197	ENSGT00940000159873.j	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.a	ENSGT01060000249076.a	ENSGT00390000001745.a.a	ENSGT00510000054197.n	ENSGT00940000156036.nb
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00390000002661.b.ub.b.a.a.b.b ##8	ENSGT00940000159194.g #9	ENSGT00940000162855.a.a.a.a.c #10	ENSGT00940000161549.a.b.a	ENSGT00970000193390.c.b.b.a.l.a.b	ENSGT00940000159045 #11	ENSGT00390000003774.a.a.d.b #12	ENSGT00940000157616.j.b.c #13	ENSGT00940000159356.a.a.e #14	ENSGT01050000244841.A.b.a.b.a.a.a	ENSGT00390000014772.l.mc.a #17	ENSGT00940000171486.A.a	ENSGT00940000156787.a #19	ENSGT00940000160839.e #20	ENSGT00950000183051.a.a.b.b #21	ENSGT00920000149172.c #22	ENSGT00940000156446.db.b #23	ENSGT00390000015719.c.c.d	ENSGT00390000016565.g.e	ENSGT00940000154868.a.b.b.c	ENSGT00390000007371.f.d.a.b	ENSGT00950000182900.B.d	ENSGT00620000087993.a.b.j	ENSGT00960000191430	ENSGT00990000211197	ENSGT00940000165134.a.b.f.a.a.b	ENSGT00940000165224.a.b.c	ENSGT00390000003312.a	ENSGT00940000161527.w.a	ENSGT00940000156115.d.b	ENSGT00530000063770.c.a.h
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	22	emc2 (ENSOTSG00005001786) #7	eif3ea (ENSOTSG00005001799) ##8	RSPO2 (ENSOTSG00005001806) #9	ENSOTSG00005001848 #10	ENSOTSG00005002139	ENSOTSG00005002142	zgc:91890 (ENSOTSG00005002146) #12	NFATC1 (ENSOTSG00005002159) #13	SALL3 (ENSOTSG00005002213) #14	GALR1 (ENSOTSG00005002214)	mbpb (ENSOTSG00005002216) #17	ENSOTSG00005002218	ZNF236 (ENSOTSG00005002226) #19	ZNF516 (ENSOTSG00005002293) #20	TSHZ1 (ENSOTSG00005002300) #21	PTGR3 (ENSOTSG00005002302) #22	ZNF407 (ENSOTSG00005002308) #23	nr0b2a (ENSOTSG00005002415)	KDF1 (ENSOTSG00005002420)	tpbgl (ENSOTSG00005002426)	tmem222a (ENSOTSG00005002429)	wdtc1 (ENSOTSG00005002449)	CEP85 (ENSOTSG00005003927)	cops7a (ENSOTSG00005003929)	cldc1 (ENSOTSG00005003932)	ENSOTSG00005003941	cd4-1 (ENSOTSG00005003946)	ENSOTSG00005003947	usp5 (ENSOTSG00005003949)	P3H3 (ENSOTSG00005003957)	gnb3a (ENSOTSG00005003963)
Chinook salmon	MODERN SPECIES	2926	picalma (ENSOTSG00005030757)	SEC24A (ENSOTSG00005029871)	sar1b (ENSOTSG00005029862)	JADE2 (ENSOTSG00005029859)	cdkn2aipnl (ENSOTSG00005029856)	ube2b (ENSOTSG00005029731)	CDKL3 (ENSOTSG00005029730)	ppp2cab (ENSOTSG00005029728)	SKP1 (ENSOTSG00005029727)	tcf7 (ENSOTSG00005029726)	vdac1 (ENSOTSG00005029712)	C5orf15 (ENSOTSG00005029711)	fstl4 (ENSOTSG00005027338)	ZNF516 (ENSOTSG00005027333) #20	TSHZ1 (ENSOTSG00005027332) #21	PTGR3 (ENSOTSG00005027331) #22	ENSOTSG00005027329 #23	ENSOTSG00005027328 #23	nr0b2a (ENSOTSG00005027327)	KDF1 (ENSOTSG00005027326)	tpbgl (ENSOTSG00005027324)	tmem222a (ENSOTSG00005027323)	wdtc1 (ENSOTSG00005027278)	CEP85 (ENSOTSG00005027276)	cops7a (ENSOTSG00005027273)	cldc1 (ENSOTSG00005027271)	cd4-1 (ENSOTSG00005027270)	ENSOTSG00005027269	usp5 (ENSOTSG00005027069)	P3H3 (ENSOTSG00005027065)	gnb3a (ENSOTSG00005027063)
Chinook salmon	MODERN SPECIES	22	emc2 (ENSOTSG00005006046) #7	eif3ea (ENSOTSG00005005964) ##8	RSPO2 (ENSOTSG00005005961) #9	ENSOTSG00005005088 #10	ENSOTSG00005005066	ENSOTSG00005005064 #11	zgc:91890 (ENSOTSG00005005063) #12	NFATC1 (ENSOTSG00005005036) #13	SALL3 (ENSOTSG00005005033) #14	GALR1 (ENSOTSG00005005032)	mbpb (ENSOTSG00005005029) #17	ENSOTSG00005005027	ZNF236 (ENSOTSG00005004834) #19	ZNF516 (ENSOTSG00005004810) #20	TSHZ1 (ENSOTSG00005004808) #21	PTGR3 (ENSOTSG00005004805) #22	ZNF407 (ENSOTSG00005004803) #23	nr0b2a (ENSOTSG00005004802)	KDF1 (ENSOTSG00005004800)	tpbgl (ENSOTSG00005004798)	tmem222a (ENSOTSG00005004796)	wdtc1 (ENSOTSG00005004596)	CEP85 (ENSOTSG00005004587)	cops7a (ENSOTSG00005004586)	cldc1 (ENSOTSG00005004584)	ENSOTSG00005004582	cd4-1 (ENSOTSG00005004579)	ENSOTSG00005004577	usp5 (ENSOTSG00005004398)	P3H3 (ENSOTSG00005004386)	gnb3a (ENSOTSG00005004381)
Coho salmon	MODERN SPECIES	11	eif3ea (ENSOKIG00005000430) ##8	RSPO2 (ENSOKIG00005000404) #9	ENSOKIG00005000274 #10	ENSOKIG00005000149	ENSOKIG00005000141	ENSOKIG00005000110 #11	zgc:91890 (ENSOKIG00005027165) #12	NFATC1 (ENSOKIG00005027131) #13	SALL3 (ENSOKIG00005027111) #14	GALR1 (ENSOKIG00005027078)	mbpb (ENSOKIG00005027064) #17	ENSOKIG00005027049	ZNF236 (ENSOKIG00005027003) #19	ZNF516 (ENSOKIG00005026972) #20	TSHZ1 (ENSOKIG00005026959) #21	PTGR3 (ENSOKIG00005026950) #22	ZNF407 (ENSOKIG00005026831) #23	nr0b2a (ENSOKIG00005026816)	KDF1 (ENSOKIG00005026802)	tpbgl (ENSOKIG00005026795)	tmem222a (ENSOKIG00005026780)	wdtc1 (ENSOKIG00005026559)	ENSOKIG00005026536	ENSOKIG00005026516	ENSOKIG00005026456	COPS7A (ENSOKIG00005026420)	ENSOKIG00005026392	ENSOKIG00005026352	cd4-1 (ENSOKIG00005026315)	ENSOKIG00005026298	usp5 (ENSOKIG00005026160)
Rainbow trout	MODERN SPECIES	21	if36 (ENSOMYG00000004178) ##8	RSPO2 (ENSOMYG00000004058) #9	ENSOMYG00000002802 #10	ENSOMYG00000001374	ENSOMYG00000001352	ENSOMYG00000068740	zgc:91890 (ENSOMYG00000001305) #12	NFATC1 (ENSOMYG00000001264) #13	SALL3 (ENSOMYG00000001150) #14	GALR1 (ENSOMYG00000001126)	mbpb (ENSOMYG00000077327) #17	ENSOMYG00000064884	ZNF236 (ENSOMYG00000001055) #19	ZNF516 (ENSOMYG00000000977) #20	TSHZ1 (ENSOMYG00000000961) #21	PTGR3 (ENSOMYG00000000954) #22	ENSOMYG00000072387	ZNF407 (ENSOMYG00000072638) #23	ENSOMYG00000064514	nr0b2a (ENSOMYG00000000941)	ENSOMYG00000000924	tpbgl (ENSOMYG00000072556)	tmem222a (ENSOMYG00000000900)	wdtc1 (ENSOMYG00000000892)	ENSOMYG00000000880	ENSOMYG00000058000	ENSOMYG00000000867	ENSOMYG00000000849	ENSOMYG00000000836	cd209 (ENSOMYG00000000828)	cd4-1 (ENSOMYG00000000824)
Salmoninae	ANCESTRAL SPECIES	32	ENSGT00920000149172.c #22	ENSGT00940000156446.db.b #23	ENSGT00390000015719.c.c.d	ENSGT00390000016565.g.e	ENSGT01000000219127	ENSGT00970000193390.c.b.b.a.l.a.b	ENSGT00940000166468	ENSGT00390000003774.a.a.d.b #12	ENSGT00940000157616.j.b.c #13	ENSGT00940000159356.a.a.e #14	ENSGT01050000244841.A.b.a.b.a.a.a	ENSGT00390000014772.l.mc.a #17	ENSGT00940000156787.b #19	ENSGT00940000160839.f #20	ENSGT00950000183051.a.a.b.a #21	ENSGT00920000149172.d #22	ENSGT00940000156446.db.a #23	ENSGT00390000015719.c.c.c	ENSGT00390000016565.g.f	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f.d	ENSGT00950000182900.B.c	ENSGT00620000087993.a.b.i	ENSGT00520000055567.b	ENSGT00940000165779	ENSGT00940000159873.i.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.d	ENSGT00390000001745.a.b	ENSGT00940000159873.j	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.a
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000159194.h #9	ENSGT00940000162855.a.a.a.a.d #10	ENSGT00940000161549.a.b.b	ENSGT00970000193390.c.b.b.a.l.a.a	ENSGT00940000166468	ENSGT00390000003774.a.a.d.a #12	ENSGT00940000157616.j.b.d #13	ENSGT00940000159356.a.a.f #14	ENSGT01050000244841.A.b.a.b.a.a.b	ENSGT00390000014772.l.mc.b #17	ENSGT00940000171486.A.b	ENSGT01000000219127	ENSGT00940000156787.b #19	ENSGT00940000160839.f #20	ENSGT00950000183051.a.a.b.a #21	ENSGT00920000149172.d #22	ENSGT00940000156446.db.a #23	ENSGT00390000015719.c.c.c	ENSGT00390000016565.g.f	ENSGT00940000154868.a.b.b.d	ENSGT00390000007371.f.d.a.a	ENSGT00950000182900.B.c	ENSGT00620000087993.a.b.i	ENSGT00520000055567.b	ENSGT00940000165779	ENSGT00940000159873.i.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.d	ENSGT00390000001745.a.b	ENSGT00510000054197.m	ENSGT00940000156036.ob
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000159194.h #9	ENSGT00940000162855.a.a.a.a.d #10	ENSGT00940000161549.a.b.b	ENSGT00970000193390.c.b.b.a.l.a.a	ENSGT00940000166468	ENSGT00390000003774.a.a.d.a #12	ENSGT00940000157616.j.b.d #13	ENSGT00940000159356.a.a.f #14	ENSGT01050000244841.A.b.a.b.a.a.b	ENSGT00390000014772.l.mc.b #17	ENSGT00940000171486.A.b	ENSGT00940000156787.b #19	ENSGT01000000219127	ENSGT00940000160839.f #20	ENSGT00950000183051.a.a.b.a #21	ENSGT00920000149172.d #22	ENSGT00940000156446.db.a #23	ENSGT00390000015719.c.c.c	ENSGT00390000016565.g.f	ENSGT00940000154868.a.b.b.d	ENSGT00390000007371.f.c.b.b	ENSGT00950000182900.B.c	ENSGT00620000087993.a.b.i	ENSGT00520000055567.b	ENSGT00940000165779.c	ENSGT00940000159873.i.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.d	ENSGT00390000001745.a.b	ENSGT00510000054197.m	ENSGT00940000156036.ob
River trout	MODERN SPECIES	22	ENSSTUG00000002065	ENSSTUG00000002072	zgc:91890 (ENSSTUG00000002091) #12	NFATC1 (ENSSTUG00000002110) #13	SALL3 (ENSSTUG00000002135) #14	ENSSTUG00000002142	ENSSTUG00000002144	GALR1 (ENSSTUG00000002145)	mbpb (ENSSTUG00000002150) #17	ENSSTUG00000002160	ZNF236 (ENSSTUG00000002170) #19	ENSSTUG00000002197	ZNF516 (ENSSTUG00000002205) #20	ENSSTUG00000002212	TSHZ1 (ENSSTUG00000002217) #21	PTGR3 (ENSSTUG00000002224) #22	ZNF407 (ENSSTUG00000002289) #23	nr0b2a (ENSSTUG00000002363)	KDF1 (ENSSTUG00000002381)	tpbgl (ENSSTUG00000002387)	tmem222a (ENSSTUG00000002395)	wdtc1 (ENSSTUG00000002419)	CEP85 (ENSSTUG00000002648)	ENSSTUG00000002687	si:ch211-154o6.3 (ENSSTUG00000002704)	cops7a (ENSSTUG00000002740)	cldc1 (ENSSTUG00000002763)	cldc1 (ENSSTUG00000002795)	cd4-1 (ENSSTUG00000002816)	CD4-2b (ENSSTUG00000002855)	usp5 (ENSSTUG00000002931)
Atlantic salmon	MODERN SPECIES	24	RSPO2 (ENSSSAG00000096641) #9	ENSSSAG00000012590 #10	ENSSSAG00000036583	ENSSSAG00000092333	ENSSSAG00000076976	zgc:91890 (ENSSSAG00000032826) #12	NFATC1 (ENSSSAG00000032982) #13	SALL3 (ENSSSAG00000033555) #14	ENSSSAG00000094103	GALR1 (ENSSSAG00000103605)	mbpb (ENSSSAG00000033944) #17	ENSSSAG00000104955	ZNF236 (ENSSSAG00000034272) #19	ZNF516 (ENSSSAG00000035325) #20	TSHZ1 (ENSSSAG00000035735) #21	PTGR3 (ENSSSAG00000036059) #22	ZNF407 (ENSSSAG00000037948) #23	ENSSSAG00000109771	nr0b2a (ENSSSAG00000038883)	ENSSSAG00000038969	tpbgl (ENSSSAG00000039024)	ENSSSAG00000040386	ENSSSAG00000039109	ENSSSAG00000040435	ENSSSAG00000040491	ENSSSAG00000040620	ENSSSAG00000040658	CLC4E (ENSSSAG00000040735)	cd4-1 (ENSSSAG00000040774)	ENSSSAG00000040842	usp5 (ENSSSAG00000040926)
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00390000011922.t #7	ENSGT00390000002661.b.ub.b.a.a.b.a ##8	ENSGT00940000159194.h #9	ENSGT00940000162855.a.a.a.a.d #10	ENSGT00970000193390.c.b.b.a.l.a.a	ENSGT00390000003774.a.a.d.a #12	ENSGT00940000157616.j.b.d #13	ENSGT00940000159356.a.a.f #14	ENSGT01050000244841.A.b.a.b.a.a.b	ENSGT00390000014772.l.mc.b #17	ENSGT00940000171486.A.b	ENSGT00940000156787.b #19	ENSGT01000000219127	ENSGT00940000160839.f #20	ENSGT00950000183051.a.a.b.a #21	ENSGT00920000149172.d #22	ENSGT00940000156446.db.a #23	ENSGT00390000015719.c.c.c	ENSGT00390000016565.g.f	ENSGT00940000154868.a.b.b.d	ENSGT00390000007371.f.d.a.a	ENSGT00950000182900.B.c	ENSGT00620000087993.a.b.i.a	ENSGT00620000087993.a.b.i.b	ENSGT00520000055567.b	ENSGT00940000165779	ENSGT00940000159873.i.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.b.a	ENSGT01060000249076.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.d	ENSGT00390000001745.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00390000011922.t #7	ENSGT00390000002661.b.ub.b.a.b ##8	ENSGT00940000159194.h #9	ENSGT00940000162855.a.a.a.a.d #10	ENSGT00970000193390.c.b.b.a.l.a.a	ENSGT00390000003774.a.a.d.a #12	ENSGT00940000157616.j.b.d #13	ENSGT00940000159356.a.a.f #14	ENSGT01050000244841.A.b.a.b.a.a.b	ENSGT00390000014772.l.mc.b #17	ENSGT00940000171486.A.b	ENSGT01000000219127	ENSGT00940000156787.b #19	ENSGT00940000160839.f #20	ENSGT00950000183051.a.a.b.a #21	ENSGT00920000149172.d #22	ENSGT00940000156446.db.a #23	ENSGT00390000015719.c.c.c	ENSGT00390000016565.g.f	ENSGT00940000154868.a.b.b.d	ENSGT00390000007371.f.d.a.a	ENSGT00950000182900.B.c	ENSGT00620000087993.a.b.i.a	ENSGT00620000087993.a.b.i.b	ENSGT00520000055567.b	ENSGT00940000165779	ENSGT00940000159873.i.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.c.b.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.d	ENSGT00390000001745.a.b	ENSGT00510000054197.m
Chinook salmon	MODERN SPECIES	15	eif3ea (ENSOTSG00005011582) ##8	RSPO2 (ENSOTSG00005011580) #9	ENSOTSG00005011545 #10	ENSOTSG00005011543	zgc:91890 (ENSOTSG00005011542) #12	NFATC1 (ENSOTSG00005011528) #13	SALL3 (ENSOTSG00005011526) #14	ENSOTSG00005011525	GALR1 (ENSOTSG00005011524)	mbpb (ENSOTSG00005011522) #17	ENSOTSG00005011523	ENSOTSG00005011521	ZNF236 (ENSOTSG00005011520) #19	ZNF516 (ENSOTSG00005011519) #20	TSHZ1 (ENSOTSG00005011518) #21	PTGR3 (ENSOTSG00005011517) #22	ENSOTSG00005011515	cldc1 (ENSOTSG00005011514)	ENSOTSG00005011513	cd4-1 (ENSOTSG00005011511)	ENSOTSG00005011510	usp5 (ENSOTSG00005009633)	P3H3 (ENSOTSG00005009616)	gnb3a (ENSOTSG00005009615)	cdca3 (ENSOTSG00005009614)	pex5 (ENSOTSG00005009505)	CLSTN3 (ENSOTSG00005009190)	lpcat3 (ENSOTSG00005009183)	tpi1b (ENSOTSG00005009180)	ENSOTSG00005009179	rabac1 (ENSOTSG00005009178)
Coho salmon	MODERN SPECIES	4	eif3ea (ENSOKIG00005013195) ##8	RSPO2 (ENSOKIG00005013309) #9	ENSOKIG00005013925 #10	ENSOKIG00005025784	ENSOKIG00005025797 #12	NFATC1 (ENSOKIG00005025817) #13	SALL3 (ENSOKIG00005025839) #14	GALR1 (ENSOKIG00005025890)	mbpb (ENSOKIG00005025916) #17	ENSOKIG00005025929	ZNF236 (ENSOKIG00005025952) #19	ENSOKIG00005026023	ENSOKIG00005026038 #20	ENSOKIG00005026049	TSHZ1 (ENSOKIG00005026057) #21	PTGR3 (ENSOKIG00005026070) #22	ZNF407 (ENSOKIG00005026123) #23	nr0b2a (ENSOKIG00005026188)	KDF1 (ENSOKIG00005026199)	tpbgl (ENSOKIG00005026203)	ENSOKIG00005026204	tmem222a (ENSOKIG00005003814)	wdtc1 (ENSOKIG00005003873)	ENSOKIG00005004016	ENSOKIG00005004034	ENSOKIG00005004038	ENSOKIG00005004046	si:ch211-154o6.3 (ENSOKIG00005004068)	cops7a (ENSOKIG00005004092)	cldc1 (ENSOKIG00005004106)	ENSOKIG00005004127
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000035633	ENSOMYG00000035625	ENSOMYG00000035618	ENSOMYG00000063996	zgc:91890 (ENSOMYG00000035606) #12	NFATC1 (ENSOMYG00000035590) #13	ENSOMYG00000060359	SALL3 (ENSOMYG00000035569) #14	ENSOMYG00000035556	GALR1 (ENSOMYG00000058662)	mbpb (ENSOMYG00000068618) #17	ENSOMYG00000064197	ZNF236 (ENSOMYG00000035528) #19	ZNF516 (ENSOMYG00000035494) #20	TSHZ1 (ENSOMYG00000035486) #21	PTGR3 (ENSOMYG00000035472) #22	ZNF407 (ENSOMYG00000035459) #23	nr0b2a (ENSOMYG00000035445)	ENSOMYG00000035439	tpbgl (ENSOMYG00000074373)	ENSOMYG00000057152	wdtc1 (ENSOMYG00000035008)	ENSOMYG00000034941	ENSOMYG00000034924	si:ch211-154o6.3 (ENSOMYG00000034899)	ENSOMYG00000034866	cldc1 (ENSOMYG00000034835)	ENSOMYG00000034819	cd4-1 (ENSOMYG00000034801)	ENSOMYG00000034790	usp5 (ENSOMYG00000034682)
Huchen	MODERN SPECIES	45				ENSHHUG00000013003 #10	ENSHHUG00000013917	ENSHHUG00000013921	ENSHHUG00000013924	zgc:91890 (ENSHHUG00000013928) #12	NFATC1 (ENSHHUG00000013952) #13	SALL3 (ENSHHUG00000013967) #14	GALR1 (ENSHHUG00000013988)	mbpb (ENSHHUG00000014011) #17	ZNF236 (ENSHHUG00000014041) #19	ZNF516 (ENSHHUG00000014117) #20	TSHZ1 (ENSHHUG00000014141) #21	PTGR3 (ENSHHUG00000014145) #22	ENSHHUG00000014148 #23	ENSHHUG00000014153 #23	nr0b2a (ENSHHUG00000014156)	KDF1 (ENSHHUG00000014161)	ENSHHUG00000014166	tmem222a (ENSHHUG00000014174)	wdtc1 (ENSHHUG00000014182)	CEP85 (ENSHHUG00000014282)	ENSHHUG00000014301	si:ch211-154o6.3 (ENSHHUG00000014325)	ENSHHUG00000014334	cldc1 (ENSHHUG00000014348)	cldc1 (ENSHHUG00000014398)	cd4-1 (ENSHHUG00000014428)	ENSHHUG00000014466
Northern pike	MODERN SPECIES	19	ENSELUG00000025161	gdf6a (ENSELUG00000020475)	ENSELUG00000020466	ENSELUG00000030656	ENSELUG00000020437	zgc:91890 (ENSELUG00000020425) #12	NFATC1 (ENSELUG00000000894) #13	SALL3 (ENSELUG00000020351) #14	GALR1 (ENSELUG00000020304)	mbpb (ENSELUG00000027307) #17	ENSELUG00000020277	ENSELUG00000020125	ZNF236 (ENSELUG00000020211) #19	ENSELUG00000021678	TSHZ1 (ENSELUG00000020104) #21	PTGR3 (ENSELUG00000020096) #22	ZNF407 (ENSELUG00000020080) #23	nr0b2a (ENSELUG00000020058)	RNF213 (ENSELUG00000020033)	ENSELUG00000019929	tpbgl (ENSELUG00000019857)	wdtc1 (ENSELUG00000019912)	CEP85 (ENSELUG00000019854)	ENSELUG00000019827	si:ch211-154o6.3 (ENSELUG00000019787)	cops7a (ENSELUG00000019718)	cldc1 (ENSELUG00000032669)	cldc1 (ENSELUG00000019676)	cd4-1 (ENSELUG00000019649)	ENSELUG00000019629	usp5 (ENSELUG00000019584)
Otomorpha	ANCESTRAL SPECIES	62	ENSGT00940000160140.a.b	ENSGT00390000011748.bb	ENSGT01100000263484.B.b.b.a.b	ENSGT00530000063880.b.f	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.b #8	ENSGT00940000159194 #9	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23
Clupeiformes	ANCESTRAL SPECIES		ENSGT00530000063880.b.f.h	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.a ##8	ENSGT00940000159194 #9	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.l #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000155141.w.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l	ENSGT00940000157045.a	ENSGT00530000063023.B	ENSGT00940000158741	ENSGT00390000017671.a.b	ENSGT00650000094921	ENSGT00940000156347.f	ENSGT00440000034270.a.b	ENSGT00390000011734	ENSGT00940000158130
Atlantic herring	MODERN SPECIES	2	TMEM74 (ENSCHAG00000019848)	emc2 (ENSCHAG00000019872) #7	EIF3E (ENSCHAG00000020027) ##8	RSPO2 (ENSCHAG00000020203) #9	ENSCHAG00000020285 #10	ENSCHAG00000021168	ENSCHAG00000021189	zgc:91890 (ENSCHAG00000021297) #12	NFATC1 (ENSCHAG00000021304) #13	SALL3 (ENSCHAG00000021345) #14	ENSCHAG00000021361 #16	ENSCHAG00000021396 #17	ENSCHAG00000021400 #19	ZNF516 (ENSCHAG00000021407) #20	TSHZ1 (ENSCHAG00000021412) #21	PTGR3 (ENSCHAG00000021416) #22	ZNF407 (ENSCHAG00000021418) #23	cndp1 (ENSCHAG00000021458)	ENSCHAG00000021816	azi2 (ENSCHAG00000021820)	cmc1 (ENSCHAG00000021828)	eomesb (ENSCHAG00000021831)	ENSCHAG00000021839	ENSCHAG00000021896	ENSCHAG00000021902	ENSCHAG00000000399	ENSCHAG00000000437	ENSCHAG00000000525	gbp (ENSCHAG00000000627)	KCNV1 (ENSCHAG00000000643)	dek (ENSCHAG00000000704)
Denticle herring	MODERN SPECIES	15	TMEM74 (ENSDCDG00000014041)	emc2 (ENSDCDG00000014097) #7	RSPO2 (ENSDCDG00000014614) #9	ENSDCDG00000014905 #10	ENSDCDG00000021560	ENSDCDG00000021563	zgc:91890 (ENSDCDG00000021564) #12	NFATC1 (ENSDCDG00000021567) #13	SALL3 (ENSDCDG00000021569) #14	GALR1 (ENSDCDG00000021571)	mbpb (ENSDCDG00000021573) #17	ENSDCDG00000021576 #17	ZNF236 (ENSDCDG00000021583) #19	ZNF516 (ENSDCDG00000021591) #20	TSHZ1 (ENSDCDG00000021593) #21	PTGR3 (ENSDCDG00000021594) #22	ZNF407 (ENSDCDG00000021596) #23	cndp1 (ENSDCDG00000021615)	ENSDCDG00000022184	ENSDCDG00000022189	azi2 (ENSDCDG00000022195)	cmc1 (ENSDCDG00000022197)	eomesb (ENSDCDG00000022207)	SLC4A7 (ENSDCDG00000022260)	dpy19l1l (ENSDCDG00000023182)	tbx20 (ENSDCDG00000023455)	herpud2 (ENSDCDG00000023458)	ENSDCDG00000023459	SMARCC1 (ENSDCDG00000023476)	CSPG5 (ENSDCDG00000023950)	elp6 (ENSDCDG00000023961)
Otophysi	ANCESTRAL SPECIES	454														ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23
Characiphysae	ANCESTRAL SPECIES	123	ENSGT00940000162208.`c.a	ENSGT00940000155184	ENSGT00950000182919.A.p.h	ENSGT00390000007284	ENSGT00730000111138	ENSGT01060000248664	ENSGT01050000244841.A.b.a.b.a.a.j	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000157046.E	ENSGT00940000158313.a.a	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23
Characiphysae_b	ANCESTRAL SPECIES	107	ENSGT00940000162208.`c.a	ENSGT00940000155184	ENSGT00950000182919.A.p.h	ENSGT00390000007284	ENSGT00730000111138	ENSGT01060000248664	ENSGT01050000244841.A.b.a.b.a.a.j	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00940000157046.E	ENSGT00940000158313.a.a	ENSGT00940000160528.a	ENSGT00940000156890.a.a.t	ENSGT00940000160839 #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23
Characoidei	ANCESTRAL SPECIES	193	ENSGT00940000156772.a	ENSGT00390000009168	ENSGT01030000234610.a.b	ENSGT00940000157179	ENSGT00390000011769	ENSGT00940000164385.b	ENSGT00940000155184	ENSGT00950000182919.A.p.h	ENSGT00390000007284	ENSGT00730000111138	ENSGT01060000248664	ENSGT01050000244841.A.b.a.b.a.a.j	ENSGT00940000171486.A	ENSGT00940000156787 #19	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23
Mexicana tetra	MODERN SPECIES	24	rwdd1 (ENSAMXG00000035253)	calhm5.1 (ENSAMXG00000032177)	klhl32 (ENSAMXG00000009056)	mms22l (ENSAMXG00000008792)	ENSAMXG00000039835	fbxl4 (ENSAMXG00000008664)	FAXC (ENSAMXG00000008654)	coq3 (ENSAMXG00000008641)	ENSAMXG00000008502	GALR1 (ENSAMXG00000001883)	ENSAMXG00000032254 ##17	ENSAMXG00000039889	ENSAMXG00000033001 #19	ENSAMXG00000034873 #19	TSHZ1 (ENSAMXG00000032425) #21	PTGR3 (ENSAMXG00000001839) #22	ENSAMXG00000040828	tssk6 (ENSAMXG00000037044)	ENSAMXG00000029483 #23	MED26 (ENSAMXG00000042246)	trnau1apb (ENSAMXG00000001805)	CDY1 (ENSAMXG00000038382)	rpp40 (ENSAMXG00000001755)	fitm1l (ENSAMXG00000042111)	gorasp1a (ENSAMXG00000044042)	myh7l (ENSAMXG00000001635)	mrpl34 (ENSAMXG00000038851)	ENSAMXG00000001545	PIK3CB (ENSAMXG00000001526)	ENSAMXG00000001518	ENSAMXG00000001494
Red-bellied piranha	MODERN SPECIES	850															TSHZ1 (ENSPNAG00000002688) #21	PTGR3 (ENSPNAG00000002695) #22	ENSPNAG00000013303 #23	ENSPNAG00000013327
Channel catfish	MODERN SPECIES	12	ENSIPUG00000004718	ENSIPUG00000004723	ENSIPUG00000004730	fam26e (ENSIPUG00000004741)	mms22l (ENSIPUG00000004760)	ENSIPUG00000004784	fbxl4 (ENSIPUG00000004812)	FAXC (ENSIPUG00000004829)	coq3 (ENSIPUG00000004833)	pnisr (ENSIPUG00000004847)	GALR1 (ENSIPUG00000004857)	ENSIPUG00000004873 ##17	mbp (ENSIPUG00000004886)	ZNF236 (ENSIPUG00000004905) #19	TSHZ1 (ENSIPUG00000004927) #21	zadh2 (ENSIPUG00000004945) #22	znf407 (ENSIPUG00000004963) #23	rabgef1l (ENSIPUG00000004981)	ENSIPUG00000005005	otol1a (ENSIPUG00000005050)	sptssb (ENSIPUG00000005061)	nmd3 (ENSIPUG00000005073)	PPM1L (ENSIPUG00000005149)	KLHL10 (ENSIPUG00000005168)	ENSIPUG00000005181	ENSIPUG00000005194	KPNA4 (ENSIPUG00000005219)	Trim59 (ENSIPUG00000005387)	smc4 (ENSIPUG00000005409)	ift80 (ENSIPUG00000005577)	ENSIPUG00000005622
Osteoglossiformes	ANCESTRAL SPECIES	6	ENSGT00390000011922 #7	ENSGT00390000002661.b.ub.b.a.b ##8	ENSGT00940000159194.c #9	ENSGT00940000166022	ENSGT00940000162855.a.a.a.a #10	ENSGT00940000161549.a.b	ENSGT00940000177120	ENSGT00940000166468	ENSGT00390000003774.a.a.d #12	ENSGT00940000157616.j.b #13	ENSGT00940000159356.a.a.g #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.k ##17	ENSGT00940000160839.q #20	ENSGT00950000183051.a.a.b #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00510000051337	ENSGT00940000167743	ENSGT00390000004886	ENSGT00940000153979.B	ENSGT00940000166686	ENSGT00940000164984	ENSGT00940000157640.b	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.kb	ENSGT00730000110871.b	ENSGT00730000110871.a.a.a.a.jb
P. kingsleyae	MODERN SPECIES	1	TMEM74 (ENSPKIG00000012866)	emc2 (ENSPKIG00000012898) #7	EIF3E (ENSPKIG00000012995) ##8	RSPO2 (ENSPKIG00000013040) #9	ENSPKIG00000013061	ENSPKIG00000013112 #10	ENSPKIG00000013237	ENSPKIG00000013258	zgc:91890 (ENSPKIG00000013291) #12	NFATC1 (ENSPKIG00000013338) #13	SALL3 (ENSPKIG00000013427) #14	GALR1 (ENSPKIG00000013494)	MBP (ENSPKIG00000013514) ##17	ENSPKIG00000013529 #20	TSHZ1 (ENSPKIG00000013544) #21	PTGR3 (ENSPKIG00000013560) #22	ENSPKIG00000013574 #23	CNDP1 (ENSPKIG00000013590)	cndp1 (ENSPKIG00000013619)	ENSPKIG00000013645	zgc:113232 (ENSPKIG00000013669)	snrnp48 (ENSPKIG00000013703)	sri (ENSPKIG00000013737)	ENSPKIG00000013764	cdk14 (ENSPKIG00000013865)	fzd1 (ENSPKIG00000013955)	ENSPKIG00000013970	ENSPKIG00000013986	ENSPKIG00000014004	ENSPKIG00000014014	ENSPKIG00000014025
Asian bonytongue	MODERN SPECIES	9	TMEM74 (ENSSFOG00015031673)	emc2 (ENSSFOG00015011902) #7	eif3ea (ENSSFOG00015030883) ##8	RSPO2 (ENSSFOG00015011936) #9	ENSSFOG00015012019 #10	ENSSFOG00015012103	ENSSFOG00015026639	zgc:91890 (ENSSFOG00015012146) #12	NFATC1 (ENSSFOG00015012171) #13	SALL3 (ENSSFOG00015012223) #14	GALR1 (ENSSFOG00015027200)	ENSSFOG00015032584 ##17	ENSSFOG00015028246 ##17	ZNF516 (ENSSFOG00015031454) #20	TSHZ1 (ENSSFOG00015012321) #21	PTGR3 (ENSSFOG00015027057) #22	CNDP1 (ENSSFOG00015012386)	cndp1 (ENSSFOG00015012480)	ENSSFOG00015029778	ENSSFOG00015006058	ENSSFOG00015030055	ENSSFOG00015005344	ENSSFOG00015012383	ENSSFOG00015025635	snrnp48 (ENSSFOG00015006610)	sri (ENSSFOG00015006626)	ENSSFOG00015025415	ENSSFOG00015006659	cdk14 (ENSSFOG00015006666)	fzd1 (ENSSFOG00015006637)	ENSSFOG00015031940
Spotted gar	MODERN SPECIES	649	ST3GAL1 (ENSLOCG00000003647)	ENSLOCG00000003676	ZFAT (ENSLOCG00000003701)	KHDRBS3 (ENSLOCG00000003734)	FAM135B (ENSLOCG00000003757)	ENSLOCG00000003777	ENSLOCG00000018325	ENSLOCG00000003807	kcnk9 (ENSLOCG00000003851)	ENSLOCG00000003865	GALR1 (ENSLOCG00000003878)	MBP (ENSLOCG00000003900) #17	ZNF236 (ENSLOCG00000003926) #19	ZNF516 (ENSLOCG00000003974) #20	tshz1 (ENSLOCG00000004005) #21	PTGR3 (ENSLOCG00000004028) #22	ZNF407 (ENSLOCG00000004046) #23	CNDP1 (ENSLOCG00000004060)	cndp1 (ENSLOCG00000004094)	cndp2 (ENSLOCG00000004123)	ENSLOCG00000004141	ENSLOCG00000004159	snrnp48 (ENSLOCG00000004187)	ENSLOCG00000004196	ENSLOCG00000004226	vars1 (ENSLOCG00000004240)	cpvl (ENSLOCG00000004266)	ENSLOCG00000018326	ENSLOCG00000004279	ENSLOCG00000004298	ptpn23a (ENSLOCG00000004316)
Reedfish	MODERN SPECIES	4	nutf2l (ENSECRG00000019402)	RBFA (ENSECRG00000019443)	ENSECRG00000019468	ENSECRG00000019490	SLC66A2 (ENSECRG00000019522)	KCNG2 (ENSECRG00000019556)	ctdp1 (ENSECRG00000019575)	nfatc1 (ENSECRG00000019663) #13	atp9b (ENSECRG00000020120)	ENSECRG00000020408	SALL3 (ENSECRG00000020420) #14	MBP (ENSECRG00000020435) #17	ZNF236 (ENSECRG00000020468) #19	ZNF516 (ENSECRG00000020570) #20	tshz1 (ENSECRG00000020602) #21	PTGR3 (ENSECRG00000020615) #22	ENSECRG00000020638	ENSECRG00000020651 #23	CNDP1 (ENSECRG00000020687)	cndp1 (ENSECRG00000020772)	cndp2 (ENSECRG00000020940)	ENSECRG00000020970	ENSECRG00000020987	ENSECRG00000021000	ATAD2 (ENSECRG00000021029) #31	wdyhv1 (ENSECRG00000021075)	psma2b (ENSECRG00000021101) #32	mrpl32 (ENSECRG00000021136) #33	ENSECRG00000021143	ENSECRG00000021150	sdha (ENSECRG00000021166) #36
Sarcopterygii	ANCESTRAL SPECIES	91			ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000165015	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00940000171800	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Amniota	ANCESTRAL SPECIES	3	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Mammalia	ANCESTRAL SPECIES	3	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Theria	ANCESTRAL SPECIES	7	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Opossum	MODERN SPECIES	2	SLC66A2 (ENSMODG00000011978)	KCNG2 (ENSMODG00000011988)	ENSMODG00000039089	CTDP1 (ENSMODG00000011995)	NFATC1 (ENSMODG00000012018) #13	ATP9B (ENSMODG00000012216)	SALL3 (ENSMODG00000012231) #14	GALR1 (ENSMODG00000012282)	ENSMODG00000027479	MBP (ENSMODG00000012291) #17	ZNF236 (ENSMODG00000012304) #19	ENSMODG00000045385	ZNF516 (ENSMODG00000012315) #20	ENSMODG00000046201	TSHZ1 (ENSMODG00000012317) #21	PTGR3 (ENSMODG00000012320) #22	ENSMODG00000000365	ZNF407 (ENSMODG00000012332) #23	CNDP1 (ENSMODG00000012366)	CNDP2 (ENSMODG00000012371)	DIPK1C (ENSMODG00000012378)	C18orf63 (ENSMODG00000012384)	CYB5A (ENSMODG00000012386)	TIMM21 (ENSMODG00000037747)	FBXO15 (ENSMODG00000012399)	NETO1 (ENSMODG00000012411)	ENSMODG00000012418	ENSMODG00000048297	ENSMODG00000024691	ENSMODG00000036897	SOCS6 (ENSMODG00000021396)
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.i	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000159054.j	ENSGT00950000182967.a.c.b	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993
koala	MODERN SPECIES	3	DHX29 (ENSPCIG00000024988)	MTREX (ENSPCIG00000024730)	PLPP1 (ENSPCIG00000024736)	SLC38A9 (ENSPCIG00000024744)	DDX4 (ENSPCIG00000024758)	ENSPCIG00000024763	IL6ST (ENSPCIG00000024769)	ENSPCIG00000010377	ENSPCIG00000013500	MAP3K1 (ENSPCIG00000013501)	SETD9 (ENSPCIG00000013507)	MIER3 (ENSPCIG00000013512)	GPBP1 (ENSPCIG00000024724)	ACTBL2 (ENSPCIG00000036711)	TSHZ1 (ENSPCIG00000032577) #21	PTGR3 (ENSPCIG00000024213) #22	ENSPCIG00000022152 #23	ENSPCIG00000022145 #23	ENSPCIG00000036127	CNDP1 (ENSPCIG00000022140)	CNDP2 (ENSPCIG00000022137)	DIPK1C (ENSPCIG00000009872)	C18orf63 (ENSPCIG00000006419)	ENSPCIG00000006416	TIMM21 (ENSPCIG00000006413)	FBXO15 (ENSPCIG00000006410)
Common wonbat	MODERN SPECIES	599	ENSVURG00010020404	ENSVURG00010020368	ENSVURG00010020355	HSBP1L1 (ENSVURG00010020347)	SLC66A2 (ENSVURG00010020339)	KCNG2 (ENSVURG00010020329)	CTDP1 (ENSVURG00010020249)	NFATC1 (ENSVURG00010020234) #13	ATP9B (ENSVURG00010020173)	SALL3 (ENSVURG00010020136) #14	GALR1 (ENSVURG00010020125)	MBP (ENSVURG00010020099) #17	ZNF236 (ENSVURG00010020072) #19	ZNF516 (ENSVURG00010020066) #20	TSHZ1 (ENSVURG00010020060) #21	PTGR3 (ENSVURG00010020053) #22	ENSVURG00010020045 #23	CNDP1 (ENSVURG00010019817)	CNDP2 (ENSVURG00010019786)	DIPK1C (ENSVURG00010019772)	C18orf63 (ENSVURG00010019760)	ENSVURG00010019754	TIMM21 (ENSVURG00010019746)	FBXO15 (ENSVURG00010019742)	ENSVURG00010019736	NETO1 (ENSVURG00010019720)	CBLN2 (ENSVURG00010019691)	ENSVURG00010019684	ENSVURG00010019674	ENSVURG00010019664	ENSVURG00010019658
Wallaby	MODERN SPECIES	8691																ENSMEUG00000015448 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000000881	ENSSHAG00000003555	ENSSHAG00000023188	SLC66A2 (ENSSHAG00000026775)	KCNG2 (ENSSHAG00000028558)	CTDP1 (ENSSHAG00000012579)	NFATC1 (ENSSHAG00000009139) #13	ATP9B (ENSSHAG00000000789)	SALL3 (ENSSHAG00000015872) #14	GALR1 (ENSSHAG00000028513)	MBP (ENSSHAG00000027590) #17	ZNF236 (ENSSHAG00000013079) #19	ZNF516 (ENSSHAG00000009007) #20	ENSSHAG00000030697	TSHZ1 (ENSSHAG00000014804) #21	PTGR3 (ENSSHAG00000014471) #22	ZNF407 (ENSSHAG00000010961) #23	CNDP1 (ENSSHAG00000009859)	CNDP2 (ENSSHAG00000009489)	DIPK1C (ENSSHAG00000008858)	C18orf63 (ENSSHAG00000007427)	CYB5A (ENSSHAG00000006748)	TIMM21 (ENSSHAG00000028322)	FBXO15 (ENSSHAG00000029170)	ENSSHAG00000022932	NETO1 (ENSSHAG00000001697)	CBLN2 (ENSSHAG00000025530)	SOCS6 (ENSSHAG00000024549)	RTTN (ENSSHAG00000012406)	ENSSHAG00000022678	ENSSHAG00000028556
Eutheria	ANCESTRAL SPECIES	20	ENSGT00390000010779.a.b.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Afrotheria	ANCESTRAL SPECIES	23	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022
Afrotheria_a	ANCESTRAL SPECIES	22	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a.o.a	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022
Hyrax	MODERN SPECIES	10489																PTGR3 (ENSPCAG00000006168) #22
Elephant	MODERN SPECIES	375	ENSLAFG00000031567	ENSLAFG00000003190	SLC66A2 (ENSLAFG00000015804)	KCNG2 (ENSLAFG00000032162)	CTDP1 (ENSLAFG00000018621)	NFATC1 (ENSLAFG00000008297) #13	ATP9B (ENSLAFG00000012641)	SALL3 (ENSLAFG00000013521) #14	GALR1 (ENSLAFG00000027134)	ENSLAFG00000007757 #17	ENSLAFG00000032306 #19	ENSLAFG00000007752	ENSLAFG00000031333 #20	ENSLAFG00000005840 #20	TSHZ1 (ENSLAFG00000027654) #21	PTGR3 (ENSLAFG00000015694) #22	ENSLAFG00000025849	ENSLAFG00000026800 #23	ENSLAFG00000009611	CNDP1 (ENSLAFG00000010969)	CNDP2 (ENSLAFG00000028844)	ENSLAFG00000004544	CYB5A (ENSLAFG00000010020)	TIMM21 (ENSLAFG00000018631)	FBXO15 (ENSLAFG00000018628)	NETO1 (ENSLAFG00000009759)	ENSLAFG00000030809	SOCS6 (ENSLAFG00000009337)	RTTN (ENSLAFG00000013313)	ENSLAFG00000013311	DOK6 (ENSLAFG00000013307)
Tenrec	MODERN SPECIES	17407																PTGR3 (ENSETEG00000010875) #22
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00940000172154	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Suina	ANCESTRAL SPECIES	12	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Pig	MODERN SPECIES		SNRPA1 (ENSSSCG00000005786)	CTDP1 (ENSSSCG00000005787)	ENSSSCG00000040252	NFATC1 (ENSSSCG00000004856) #13	ATP9B (ENSSSCG00000004857)	ENSSSCG00000040521	SALL3 (ENSSSCG00000004858) #14	ENSSSCG00000054407	GALR1 (ENSSSCG00000036984)	MBP (ENSSSCG00000038767) #17	ZNF236 (ENSSSCG00000023533) #19	ZNF516 (ENSSSCG00000004859) #20	ENSSSCG00000057943	ENSSSCG00000060932	TSHZ1 (ENSSSCG00000004861) #21	PTGR3 (ENSSSCG00000032488) #22	ENSSSCG00000053589 #23	CNDP1 (ENSSSCG00000004869)	CNDP2 (ENSSSCG00000004870)	DIPK1C (ENSSSCG00000039486)	C18orf63 (ENSSSCG00000004874)	CYB5A (ENSSSCG00000004875)	TIMM21 (ENSSSCG00000032494)	FBXO15 (ENSSSCG00000004873)	NETO1 (ENSSSCG00000027654)	CBLN2 (ENSSSCG00000020859)	SOCS6 (ENSSSCG00000032214)	RTTN (ENSSSCG00000032574)	CD226 (ENSSSCG00000038398)	DOK6 (ENSSSCG00000028977)	ENSSSCG00000032084
Chacoan peccary	MODERN SPECIES	788	TJP1 (ENSCWAG00000019855)	TARS3 (ENSCWAG00000019788)	TM2D3 (ENSCWAG00000019709)	PCSK6 (ENSCWAG00000019381)	ENSCWAG00000019305	CTDP1 (ENSCWAG00000019223)	NFATC1 (ENSCWAG00000018287) #13	ENSCWAG00000018247	ATP9B (ENSCWAG00000018143)	SALL3 (ENSCWAG00000018066) #14	GALR1 (ENSCWAG00000018025)	MBP (ENSCWAG00000016987) #17	ZNF236 (ENSCWAG00000016772) #19	ZNF516 (ENSCWAG00000016750) #20	TSHZ1 (ENSCWAG00000016715) #21	PTGR3 (ENSCWAG00000016684) #22	ENSCWAG00000016648 #23	ENSCWAG00000016614	CNDP1 (ENSCWAG00000016346)	CNDP2 (ENSCWAG00000016273)	ENSCWAG00000016237	C18orf63 (ENSCWAG00000016150)	CYB5A (ENSCWAG00000016075)	TIMM21 (ENSCWAG00000016025)	FBXO15 (ENSCWAG00000015960)	NETO1 (ENSCWAG00000015868)	CBLN2 (ENSCWAG00000015802)	ENSCWAG00000015753	SOCS6 (ENSCWAG00000015739)	RTTN (ENSCWAG00000014922)	CD226 (ENSCWAG00000014813)
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Cetacea	ANCESTRAL SPECIES	11	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00390000010779.a.a.a.a.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00390000010779.a.a.a.a.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00390000010779.a.a.a.a.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT00890000139472.f.b	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.lb.a	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT00890000139472.f.b	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00390000005811.e.a	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.lb.a	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Narwhal	MODERN SPECIES	295	ENSMMNG00015004029	HSBP1L1 (ENSMMNG00015004051)	SLC66A2 (ENSMMNG00015004076)	KCNG2 (ENSMMNG00015004101)	CTDP1 (ENSMMNG00015004114)	NFATC1 (ENSMMNG00015004144) #13	ATP9B (ENSMMNG00015004205)	SALL3 (ENSMMNG00015004296) #14	GALR1 (ENSMMNG00015004319)	MBP (ENSMMNG00015004355) #17	ZNF236 (ENSMMNG00015004434) #19	ENSMMNG00015004498	ZNF516 (ENSMMNG00015004508) #20	ENSMMNG00015004517	TSHZ1 (ENSMMNG00015004527) #21	PTGR3 (ENSMMNG00015004535) #22	ZNF407 (ENSMMNG00015004543) #23	CNDP1 (ENSMMNG00015004558)	CNDP2 (ENSMMNG00015004580)	DIPK1C (ENSMMNG00015004591)	C18orf63 (ENSMMNG00015004599)	ENSMMNG00015004609	TIMM21 (ENSMMNG00015004621)	FBXO15 (ENSMMNG00015004632)	NETO1 (ENSMMNG00015004652)	CBLN2 (ENSMMNG00015004661)	SOCS6 (ENSMMNG00015004670)	RTTN (ENSMMNG00015004679)	CD226 (ENSMMNG00015004693)	DOK6 (ENSMMNG00015004699)	ENSMMNG00015004712
Beluga whale	MODERN SPECIES	25	PQLC1 (ENSDLEG00000004948)	KCNG2 (ENSDLEG00000004952)	CTDP1 (ENSDLEG00000004958)	ENSDLEG00000004966	NFATC1 (ENSDLEG00000004971) #13	ATP9B (ENSDLEG00000005315)	SALL3 (ENSDLEG00000007843) #14	ENSDLEG00000007848	GALR1 (ENSDLEG00000007850)	MBP (ENSDLEG00000007855) #17	ENSDLEG00000007867	ZNF236 (ENSDLEG00000007883) #19	ZNF516 (ENSDLEG00000008884) #20	ENSDLEG00000008928	TSHZ1 (ENSDLEG00000008959) #21	ZADH2 (ENSDLEG00000008976) #22	ZNF407 (ENSDLEG00000008995) #23	CNDP1 (ENSDLEG00000009037)	CNDP2 (ENSDLEG00000009101)	FAM69C (ENSDLEG00000009206)	C18orf63 (ENSDLEG00000009238)	ENSDLEG00000009317	TIMM21 (ENSDLEG00000009352)	FBXO15 (ENSDLEG00000009385)	NETO1 (ENSDLEG00000009495)	CBLN2 (ENSDLEG00000003416)	RTTN (ENSDLEG00000003428)	CD226 (ENSDLEG00000003465)	DOK6 (ENSDLEG00000003478)	CCDC102B (ENSDLEG00000003496)	TMX3 (ENSDLEG00000003510)
Vaquita	MODERN SPECIES	5	TXNL4A (ENSPSNG00000012378)	ENSPSNG00000012460	ENSPSNG00000012516	KCNG2 (ENSPSNG00000012622)	CTDP1 (ENSPSNG00000012690)	ENSPSNG00000012721	NFATC1 (ENSPSNG00000012745) #13	ATP9B (ENSPSNG00000012909)	SALL3 (ENSPSNG00000013174) #14	ENSPSNG00000013413	GALR1 (ENSPSNG00000013471)	MBP (ENSPSNG00000013612) #17	ZNF236 (ENSPSNG00000014391) #19	ZNF516 (ENSPSNG00000014900) #20	TSHZ1 (ENSPSNG00000015019) #21	PTGR3 (ENSPSNG00000015074) #22	ZNF407 (ENSPSNG00000015129) #23	CNDP1 (ENSPSNG00000015211)	CNDP2 (ENSPSNG00000015447)	DIPK1C (ENSPSNG00000015542)	C18orf63 (ENSPSNG00000015663)	ENSPSNG00000015834	TIMM21 (ENSPSNG00000015973)	FBXO15 (ENSPSNG00000016021)	NETO1 (ENSPSNG00000016051)	CBLN2 (ENSPSNG00000016259)	SOCS6 (ENSPSNG00000016372)	RTTN (ENSPSNG00000016449)	ENSPSNG00000017429	CD226 (ENSPSNG00000017461)	DOK6 (ENSPSNG00000017574)
Dolphin	MODERN SPECIES	360																PTGR3 (ENSTTRG00000012777) #22	ZNF407 (ENSTTRG00000012774) #23	CNDP1 (ENSTTRG00000012766)	CNDP2 (ENSTTRG00000012764)
Sperm whale	MODERN SPECIES	10	ADNP2 (ENSPCTG00005015654)	RBFA (ENSPCTG00005015634)	TXNL4A (ENSPCTG00005015555)	HSBP1L1 (ENSPCTG00005015498)	PQLC1 (ENSPCTG00005015359)	KCNG2 (ENSPCTG00005015311)	CTDP1 (ENSPCTG00005014437)	ENSPCTG00005014376 #13	ATP9B (ENSPCTG00005014193)	SALL3 (ENSPCTG00005013970) #14	GALR1 (ENSPCTG00005013906)	MBP (ENSPCTG00005013054) #17	ZNF236 (ENSPCTG00005012375) #19	ZNF516 (ENSPCTG00005012183) #20	TSHZ1 (ENSPCTG00005012158) #21	PTGR3 (ENSPCTG00005012131) #22	ZNF407 (ENSPCTG00005012106) #23	CNDP1 (ENSPCTG00005011859)	CNDP2 (ENSPCTG00005011552)	ENSPCTG00005011486	C19H18orf63 (ENSPCTG00005011353)	CYB5A (ENSPCTG00005011274)	TIMM21 (ENSPCTG00005011204)	FBXO15 (ENSPCTG00005011070)	ENSPCTG00005011000	NETO1 (ENSPCTG00005010835)	CBLN2 (ENSPCTG00005010740)	SOCS6 (ENSPCTG00005010719)	ENSPCTG00005010702	ENSPCTG00005010685	RTTN (ENSPCTG00005010566)
Blue whale	MODERN SPECIES	5	TXNL4A (ENSBMSG00010009583)	SLC66A2 (ENSBMSG00010009573)	KCNG2 (ENSBMSG00010009563)	CTDP1 (ENSBMSG00010009542)	ENSBMSG00010009531	NFATC1 (ENSBMSG00010009496) #13	ATP9B (ENSBMSG00010009457)	SALL3 (ENSBMSG00010009423) #14	ENSBMSG00010009414	GALR1 (ENSBMSG00010009407)	MBP (ENSBMSG00010009319) #17	ENSBMSG00010009296	ENSBMSG00010009291 #19	ENSBMSG00010009286 #19	TSHZ1 (ENSBMSG00010009213) #21	PTGR3 (ENSBMSG00010009206) #22	ZNF407 (ENSBMSG00010013216) #23	CNDP1 (ENSBMSG00010013181)	CNDP2 (ENSBMSG00010013159)	DIPK1C (ENSBMSG00010013145)	C18orf63 (ENSBMSG00010013137)	CYB5A (ENSBMSG00010013121)	TIMM21 (ENSBMSG00010013111)	FBXO15 (ENSBMSG00010013097)	ENSBMSG00010013087	NETO1 (ENSBMSG00010013073)	CBLN2 (ENSBMSG00010013061)	SOCS6 (ENSBMSG00010013057)	ENSBMSG00010013048	ENSBMSG00010013043	RTTN (ENSBMSG00010012983)
Pecora	ANCESTRAL SPECIES	26	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Yarkand deer	MODERN SPECIES	19	HSBP1L1 (ENSCHYG00000025985)	SLC66A2 (ENSCHYG00000025926)	KCNG2 (ENSCHYG00000025901)	CTDP1 (ENSCHYG00000025858)	ENSCHYG00000025845	NFATC1 (ENSCHYG00000025717) #13	ATP9B (ENSCHYG00000025490)	SALL3 (ENSCHYG00000025411) #14	ENSCHYG00000025397	GALR1 (ENSCHYG00000025374)	MBP (ENSCHYG00000025251) #17	ENSCHYG00000025218	ZNF236 (ENSCHYG00000024966) #19	ZNF516 (ENSCHYG00000024900) #20	TSHZ1 (ENSCHYG00000024880) #21	PTGR3 (ENSCHYG00000024859) #22	ZNF407 (ENSCHYG00000024817) #23	CNDP2 (ENSCHYG00000024751)	ENSCHYG00000024713	C18orf63 (ENSCHYG00000024641)	ENSCHYG00000024552	TIMM21 (ENSCHYG00000024465)	FBXO15 (ENSCHYG00000024414)	NETO1 (ENSCHYG00000024335)	CBLN2 (ENSCHYG00000024286)	SOCS6 (ENSCHYG00000024272)	RTTN (ENSCHYG00000024194)	CD226 (ENSCHYG00000024147)	DOK6 (ENSCHYG00000024096)	ENSCHYG00000024044	ENSCHYG00000023799
Percora_a	ANCESTRAL SPECIES	28	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Bovidae	ANCESTRAL SPECIES	28	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Bovinae	ANCESTRAL SPECIES	28	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00940000182276	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT01100000263522.A.d.b.d.b	ENSGT01100000263522.A.d.b.c.a	ENSGT01100000263528.D.c.b.b.b.a.b.b	ENSGT01100000263522.A.d.b.c.b	ENSGT01100000263528.D.c.b.b.b.a.b.a
Bos	ANCESTRAL SPECIES	29	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641.h	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.b	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Bos_a	ANCESTRAL SPECIES	73	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641.h	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT01100000263481.n.a.b.b.a.a.a.a.b.a.a.b	ENSGT00940000160839 #20	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.b	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Wild yak	MODERN SPECIES	1630															TSHZ1 (ENSBMUG00000019900) #21	PTGR3 (ENSBMUG00000019912) #22	ENSBMUG00000019917 #23	CNDP1 (ENSBMUG00000019940)	CNDP2 (ENSBMUG00000019993)	C18orf63 (ENSBMUG00000020026)	CYB5A (ENSBMUG00000020045)	TIMM21 (ENSBMUG00000020076)	FBXO15 (ENSBMUG00000020110)
Domestic yak	MODERN SPECIES	13	HSBP1L1 (ENSBGRG00000024554)	ENSBGRG00000024398	KCNG2 (ENSBGRG00000024339)	CTDP1 (ENSBGRG00000024256)	ENSBGRG00000024239	NFATC1 (ENSBGRG00000023817) #13	ATP9B (ENSBGRG00000023552)	SALL3 (ENSBGRG00000023520) #14	GALR1 (ENSBGRG00000023482)	ENSBGRG00000023225 #17	ZNF236 (ENSBGRG00000022821) #19	ENSBGRG00000022789	ZNF516 (ENSBGRG00000022703) #20	ENSBGRG00000022689	TSHZ1 (ENSBGRG00000022648) #21	PTGR3 (ENSBGRG00000022621) #22	ENSBGRG00000022594	ZNF407 (ENSBGRG00000022510) #23	CNDP1 (ENSBGRG00000022393)	CNDP2 (ENSBGRG00000022281)	DIPK1C (ENSBGRG00000022222)	C18orf63 (ENSBGRG00000022180)	ENSBGRG00000022137	CYB5A (ENSBGRG00000021982)	TIMM21 (ENSBGRG00000021856)	FBXO15 (ENSBGRG00000021796)	NETO1 (ENSBGRG00000021741)	CBLN2 (ENSBGRG00000021651)	ENSBGRG00000021635	SOCS6 (ENSBGRG00000021607)	RTTN (ENSBGRG00000021012)
Bos_b	ANCESTRAL SPECIES	34	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641.h	ENSGT00940000155163.b	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.b	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Hybrid Bos Indicus	MODERN SPECIES	16	KCNG2 (ENSBIXG00005004008)	CTDP1 (ENSBIXG00005023401)	ENSBIXG00005023369	NFATC1 (ENSBIXG00005023346) #13	ATP9B (ENSBIXG00005006472)	SALL3 (ENSBIXG00005023059) #14	ENSBIXG00005023023	GALR1 (ENSBIXG00005023001)	MBP (ENSBIXG00005022953) #17	ZNF236 (ENSBIXG00005022796) #19	ENSBIXG00005022637	ENSBIXG00005003864	ZNF516 (ENSBIXG00005022566) #20	ENSBIXG00005022543	TSHZ1 (ENSBIXG00005022438) #21	PTGR3 (ENSBIXG00005022385) #22	ZNF407 (ENSBIXG00005003807) #23	ENSBIXG00005022300	CNDP1 (ENSBIXG00005022283)	CNDP2 (ENSBIXG00005003778)	ENSBIXG00005022143	C18orf63 (ENSBIXG00005006829)	CYB5A (ENSBIXG00005022055)	TIMM21 (ENSBIXG00005021999)	FBXO15 (ENSBIXG00005021977)	NETO1 (ENSBIXG00005021949)	ENSBIXG00005021916	CBLN2 (ENSBIXG00005021894)	SOCS6 (ENSBIXG00005021863)	RTTN (ENSBIXG00005005751)	ENSBIXG00005021804
Cow	MODERN SPECIES	16	ENSBTAG00000036298	TXNL4A (ENSBTAG00000013587)	ENSBTAG00000050688	SLC66A2 (ENSBTAG00000054103)	KCNG2 (ENSBTAG00000013665)	CTDP1 (ENSBTAG00000053484)	NFATC1 (ENSBTAG00000000656) #13	ATP9B (ENSBTAG00000001224)	SALL3 (ENSBTAG00000050200) #14	GALR1 (ENSBTAG00000021003)	MBP (ENSBTAG00000022890) #17	ZNF236 (ENSBTAG00000017517) #19	ENSBTAG00000053937	ZNF516 (ENSBTAG00000004650) #20	TSHZ1 (ENSBTAG00000000422) #21	PTGR3 (ENSBTAG00000001724) #22	ENSBTAG00000054164 #23	ENSBTAG00000022887 #23	CNDP1 (ENSBTAG00000021428)	CNDP2 (ENSBTAG00000009841)	DIPK1C (ENSBTAG00000000106)	C24H18orf63 (ENSBTAG00000022466)	CYB5A (ENSBTAG00000012012)	TIMM21 (ENSBTAG00000009687)	FBXO15 (ENSBTAG00000009686)	NETO1 (ENSBTAG00000012889)	CBLN2 (ENSBTAG00000005985)	SOCS6 (ENSBTAG00000017412)	RTTN (ENSBTAG00000013221)	CD226 (ENSBTAG00000009266)	DOK6 (ENSBTAG00000046957)
American bison	MODERN SPECIES	3267	ADNP2 (ENSBBBG00000014358)	ENSBBBG00000014378	TXNL4A (ENSBBBG00000014383)	HSBP1L1 (ENSBBBG00000014388)	SLC66A2 (ENSBBBG00000003309)	CTDP1 (ENSBBBG00000003330)	ENSBBBG00000014441 #13	ATP9B (ENSBBBG00000009131)	SALL3 (ENSBBBG00000003511) #14	GALR1 (ENSBBBG00000014588)	MBP (ENSBBBG00000014716) #17	ZNF236 (ENSBBBG00000007133) #19	ZNF516 (ENSBBBG00000014795) #20	TSHZ1 (ENSBBBG00000014803) #21	ENSBBBG00000002833	PTGR3 (ENSBBBG00000014811) #22	ENSBBBG00000014816	ENSBBBG00000003649 #23	ENSBBBG00000014828	CNDP1 (ENSBBBG00000003660)	CNDP2 (ENSBBBG00000014907)	ENSBBBG00000001238	C18orf63 (ENSBBBG00000001219)	CYB5A (ENSBBBG00000001172)	TIMM21 (ENSBBBG00000001146)	FBXO15 (ENSBBBG00000001118)	NETO1 (ENSBBBG00000001086)	ENSBBBG00000001082	ENSBBBG00000001073	SOCS6 (ENSBBBG00000001057)	RTTN (ENSBBBG00000000925)
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000162740	ENSGT00390000010779.a.a.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.l	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Goat	MODERN SPECIES	16	TXNL4A (ENSCHIG00000019218)	ENSCHIG00000021857	SLC66A2 (ENSCHIG00000001513)	KCNG2 (ENSCHIG00000011977)	CTDP1 (ENSCHIG00000016412)	NFATC1 (ENSCHIG00000020951) #13	ATP9B (ENSCHIG00000018159)	SALL3 (ENSCHIG00000000145) #14	ENSCHIG00000000252	GALR1 (ENSCHIG00000000288)	ENSCHIG00000000358 #17	ZNF236 (ENSCHIG00000000391) #19	ENSCHIG00000010813	ZNF516 (ENSCHIG00000014196) #20	TSHZ1 (ENSCHIG00000016422) #21	PTGR3 (ENSCHIG00000019084) #22	ZNF407 (ENSCHIG00000000452) #23	CNDP1 (ENSCHIG00000010519)	CNDP2 (ENSCHIG00000000112)	DIPK1C (ENSCHIG00000000144)	C18orf63 (ENSCHIG00000000176)	CYB5A (ENSCHIG00000000287)	TIMM21 (ENSCHIG00000000355)	FBXO15 (ENSCHIG00000000420)	ENSCHIG00000009949	ENSCHIG00000009717	NETO1 (ENSCHIG00000013781)	CBLN2 (ENSCHIG00000018855)	ENSCHIG00000021728	ENSCHIG00000024754	RTTN (ENSCHIG00000009958)
Rambouillet Sheep	MODERN SPECIES	15	PARD6G (ENSOARG00020011549)	ADNP2 (ENSOARG00020011588)	ENSOARG00020011645	ENSOARG00020011706	TXNL4A (ENSOARG00020011771)	HSBP1L1 (ENSOARG00020011927)	SLC66A2 (ENSOARG00020011960)	KCNG2 (ENSOARG00020012110)	CTDP1 (ENSOARG00020012196)	NFATC1 (ENSOARG00020012783) #13	ATP9B (ENSOARG00020014579)	GALR1 (ENSOARG00020015092)	ZNF236 (ENSOARG00020015393) #19	ENSOARG00020015995	TSHZ1 (ENSOARG00020016102) #21	PTGR3 (ENSOARG00020016189) #22	CNDP1 (ENSOARG00020016251)	CNDP2 (ENSOARG00020016430)	C18orf63 (ENSOARG00020016748)	CYB5A (ENSOARG00020016854)	TIMM21 (ENSOARG00020017050)	FBXO15 (ENSOARG00020017103)	ENSOARG00020017244	NETO1 (ENSOARG00020017333)	CBLN2 (ENSOARG00020017536)	ENSOARG00020017645	SOCS6 (ENSOARG00020017675)	RTTN (ENSOARG00020017785)	ENSOARG00020020639	DOK6 (ENSOARG00020020719)	TMX3 (ENSOARG00020020872)
Siberian musk deer	MODERN SPECIES	373	ENSMMSG00000007067	ENSMMSG00000007113	HSBP1L1 (ENSMMSG00000007184)	SLC66A2 (ENSMMSG00000007214)	KCNG2 (ENSMMSG00000007319)	CTDP1 (ENSMMSG00000007350)	NFATC1 (ENSMMSG00000007403) #13	ATP9B (ENSMMSG00000007533)	SALL3 (ENSMMSG00000007960) #14	GALR1 (ENSMMSG00000008077)	MBP (ENSMMSG00000008128) #17	ZNF236 (ENSMMSG00000008516) #19	ENSMMSG00000008670	ZNF516 (ENSMMSG00000008709) #20	TSHZ1 (ENSMMSG00000008746) #21	PTGR3 (ENSMMSG00000008758) #22	ZNF407 (ENSMMSG00000008784) #23	CNDP1 (ENSMMSG00000008827)	CNDP2 (ENSMMSG00000008992)
Camelidae	ANCESTRAL SPECIES	53	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Arabian camel	MODERN SPECIES	23	RBFA (ENSCDRG00005019809)	ENSCDRG00005008919	ENSCDRG00005008969	HSBP1L1 (ENSCDRG00005009081)	SLC66A2 (ENSCDRG00005009135)	KCNG2 (ENSCDRG00005009403)	CTDP1 (ENSCDRG00005009526)	NFATC1 (ENSCDRG00005009800) #13	ATP9B (ENSCDRG00005009917)	SALL3 (ENSCDRG00005010105) #14	GALR1 (ENSCDRG00005010287)	MBP (ENSCDRG00005010386) #17	ZNF236 (ENSCDRG00005011227) #19	ZNF516 (ENSCDRG00005011507) #20	TSHZ1 (ENSCDRG00005011569) #21	PTGR3 (ENSCDRG00005011586) #22	ENSCDRG00005011596 #23	ENSCDRG00005011659 #23	ENSCDRG00005011697	CNDP1 (ENSCDRG00005011713)	CNDP2 (ENSCDRG00005011922)	ENSCDRG00005012083	C18orf63 (ENSCDRG00005012117)	ENSCDRG00005012150	ENSCDRG00005012281	TIMM21 (ENSCDRG00005012305)	FBXO15 (ENSCDRG00005012350)	NETO1 (ENSCDRG00005012441)	CBLN2 (ENSCDRG00005012557)	RTTN (ENSCDRG00005012707)	CD226 (ENSCDRG00005012791)
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Caniformia	ANCESTRAL SPECIES	9	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00940000179600	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Canidae	ANCESTRAL SPECIES	58	ENSGT00950000183211.a.b.d	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.`b.a	ENSGT00940000156770.ab	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00940000179600	ENSGT00640000091535	ENSGT00500000044993
Canis_lupus	ANCESTRAL SPECIES		ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.b.a.b.b	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.`b.a	ENSGT00390000011552	ENSGT00390000017498	ENSGT00490000043329.a.a.a.ob.b.a	ENSGT00940000156700	ENSGT00940000159988	ENSGT00390000011962.d	ENSGT00940000154847	ENSGT00940000179600	ENSGT00640000091535
Dog	MODERN SPECIES		RBFA (ENSCAFG00845000024)	TXNL4A (ENSCAFG00845000026)	HSBP1L1 (ENSCAFG00845000030)	ENSCAFG00845000033	CTDP1 (ENSCAFG00845000045)	NFATC1 (ENSCAFG00845000073) #13	ATP9B (ENSCAFG00845000134)	SALL3 (ENSCAFG00845000191) #14	GALR1 (ENSCAFG00845000275)	MBP (ENSCAFG00845000353) #17	ZNF236 (ENSCAFG00845000448) #19	ENSCAFG00845000527	ENSCAFG00845000551	ZNF516 (ENSCAFG00845000590) #20	TSHZ1 (ENSCAFG00845000638) #21	ZADH2 (ENSCAFG00845000664) #22	ZNF407 (ENSCAFG00845000698) #23	CNDP1 (ENSCAFG00845000751)	CNDP2 (ENSCAFG00845000777)	DIPK1C (ENSCAFG00845000817)	C18orf63 (ENSCAFG00845000859)	CYB5A (ENSCAFG00845000926)	ENSCAFG00845000961	TIMM21 (ENSCAFG00845000972)	FBXO15 (ENSCAFG00845000996)	MAPRE1 (ENSCAFG00845001028)	NETO1 (ENSCAFG00845001049)	CBLN2 (ENSCAFG00845001098)	ENSCAFG00845001115	SOCS6 (ENSCAFG00845001189)	ENSCAFG00845001204
Dingo	MODERN SPECIES	125	TXNL4A (ENSCAFG00020014637)	HSBP1L1 (ENSCAFG00020014641)	ENSCAFG00020014644	CTDP1 (ENSCAFG00020014667)	NFATC1 (ENSCAFG00020014734) #13	ATP9B (ENSCAFG00020014769)	SALL3 (ENSCAFG00020015092) #14	GALR1 (ENSCAFG00020015114)	ENSCAFG00020015125 #17	ZNF236 (ENSCAFG00020015152) #19	ENSCAFG00020015228	ENSCAFG00020015238	ZNF516 (ENSCAFG00020015256) #20	ENSCAFG00020015281	TSHZ1 (ENSCAFG00020015291) #21	PTGR3 (ENSCAFG00020015292) #22	ENSCAFG00020015313 #23	CNDP1 (ENSCAFG00020015339)	CNDP2 (ENSCAFG00020015390)	DIPK1C (ENSCAFG00020015629)	C18orf63 (ENSCAFG00020015633)	ENSCAFG00020015638	TIMM21 (ENSCAFG00020015649)	FBXO15 (ENSCAFG00020015651)	ENSCAFG00020015659	ENSCAFG00020015660	NETO1 (ENSCAFG00020015664)	CBLN2 (ENSCAFG00020015667)	ENSCAFG00020015675	ENSCAFG00020015683	ENSCAFG00020015689
Red fox	MODERN SPECIES	25	ADNP2 (ENSVVUG00000018983)	ENSVVUG00000018977	TXNL4A (ENSVVUG00000018972)	ENSVVUG00000018958	SLC66A2 (ENSVVUG00000018948)	CTDP1 (ENSVVUG00000018937)	ENSVVUG00000018926	NFATC1 (ENSVVUG00000018908) #13	ATP9B (ENSVVUG00000018860)	SALL3 (ENSVVUG00000018838) #14	GALR1 (ENSVVUG00000018795)	MBP (ENSVVUG00000018785) #17	ZNF236 (ENSVVUG00000018724) #19	ZNF516 (ENSVVUG00000018686) #20	TSHZ1 (ENSVVUG00000018675) #21	PTGR3 (ENSVVUG00000018671) #22	ZNF407 (ENSVVUG00000018662) #23	CNDP1 (ENSVVUG00000018653)	CNDP2 (ENSVVUG00000018647)	DIPK1C (ENSVVUG00000018646)	C18orf63 (ENSVVUG00000018634)	ENSVVUG00000018623	TIMM21 (ENSVVUG00000018616)	FBXO15 (ENSVVUG00000018608)	NETO1 (ENSVVUG00000018563)	CBLN2 (ENSVVUG00000018554)	RTTN (ENSVVUG00000018491)	DOK6 (ENSVVUG00000018481)	ENSVVUG00000018470	CCDC102B (ENSVVUG00000018460)	TMX3 (ENSVVUG00000018447)
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.z	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00940000179600	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Ursidae	ANCESTRAL SPECIES	23	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.b #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.z	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Ursus	ANCESTRAL SPECIES	156	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT01000000215617	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071.i	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772.b #17	ENSGT00940000156787 #19	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.z	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00640000091535.m	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731	ENSGT00930000151022
American black bear	MODERN SPECIES	347															TSHZ1 (ENSUAMG00000019223) #21	PTGR3 (ENSUAMG00000019222) #22	ZNF407 (ENSUAMG00000019221) #23
Polar bear	MODERN SPECIES	128	ADNP2 (ENSUMAG00000004903)	RBFA (ENSUMAG00000004891)	ENSUMAG00000004887	TXNL4A (ENSUMAG00000004877)	ENSUMAG00000004867	SLC66A2 (ENSUMAG00000004842)	CTDP1 (ENSUMAG00000004809)	NFATC1 (ENSUMAG00000004785) #13	ATP9B (ENSUMAG00000004776)	ENSUMAG00000004770 #14	GALR1 (ENSUMAG00000004765)	MBP (ENSUMAG00000004758) #17	ENSUMAG00000004755 #19	ENSUMAG00000004744 #19	TSHZ1 (ENSUMAG00000004721) #21	ENSUMAG00000004713 #22	ENSUMAG00000004701 #23	ENSUMAG00000004695	CNDP1 (ENSUMAG00000004630)	CNDP2 (ENSUMAG00000004617)	C18orf63 (ENSUMAG00000004610)	ENSUMAG00000004601	TIMM21 (ENSUMAG00000004599)	FBXO15 (ENSUMAG00000004592)	NETO1 (ENSUMAG00000004574)	ENSUMAG00000004564	ENSUMAG00000004554	ENSUMAG00000004474	ENSUMAG00000004435	CD226 (ENSUMAG00000004424)	DOK6 (ENSUMAG00000004418)
Giant Panda	MODERN SPECIES	5	ADNP2 (ENSAMEG00000010404)	ENSAMEG00000010397	TXNL4A (ENSAMEG00000010386)	HSBP1L1 (ENSAMEG00000031443)	SLC66A2 (ENSAMEG00000010378)	KCNG2 (ENSAMEG00000010374)	CTDP1 (ENSAMEG00000010355)	NFATC1 (ENSAMEG00000010314) #13	ATP9B (ENSAMEG00000010214)	SALL3 (ENSAMEG00000010206) #14	GALR1 (ENSAMEG00000003075)	MBP (ENSAMEG00000010530) #17	ZNF236 (ENSAMEG00000010549) #19	ZNF516 (ENSAMEG00000028859) #20	TSHZ1 (ENSAMEG00000018999) #21	PTGR3 (ENSAMEG00000018987) #22	ZNF407 (ENSAMEG00000004614) #23	CNDP1 (ENSAMEG00000004582)	CNDP2 (ENSAMEG00000004519)	DIPK1C (ENSAMEG00000028067)	C18orf63 (ENSAMEG00000013625)	ENSAMEG00000029496	TIMM21 (ENSAMEG00000013601)	FBXO15 (ENSAMEG00000013571)	NETO1 (ENSAMEG00000013561)	ENSAMEG00000024530	ENSAMEG00000029000	SOCS6 (ENSAMEG00000019075)	RTTN (ENSAMEG00000018391)	CD226 (ENSAMEG00000018388)	DOK6 (ENSAMEG00000018387)
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00950000183211.a.b	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00390000015641	ENSGT00940000157616.f #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787.kb #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.z	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00940000179600	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
American mink	MODERN SPECIES	5	ADNP2 (ENSNVIG00000010960)	ENSNVIG00000010964	ENSNVIG00000010974	HSBP1L1 (ENSNVIG00000010980)	SLC66A2 (ENSNVIG00000010991)	CTDP1 (ENSNVIG00000011033)	ENSNVIG00000011164 #13	ENSNVIG00000011185 #13	ATP9B (ENSNVIG00000011196)	SALL3 (ENSNVIG00000011252) #14	MBP (ENSNVIG00000011283) #17	ZNF236 (ENSNVIG00000011386) #19	ENSNVIG00000011446	ENSNVIG00000011477	TSHZ1 (ENSNVIG00000011486) #21	PTGR3 (ENSNVIG00000011498) #22	ENSNVIG00000011503 #23	CNDP1 (ENSNVIG00000011531)	CNDP2 (ENSNVIG00000011561)	ENSNVIG00000011625	C18orf63 (ENSNVIG00000011632)	CYB5A (ENSNVIG00000011661)	TIMM21 (ENSNVIG00000011701)	FBXO15 (ENSNVIG00000011734)	NETO1 (ENSNVIG00000011793)	CBLN2 (ENSNVIG00000011856)	SOCS6 (ENSNVIG00000011891)	ENSNVIG00000011898	RTTN (ENSNVIG00000011935)	CD226 (ENSNVIG00000011995)	DOK6 (ENSNVIG00000012061)
Felidae	ANCESTRAL SPECIES	24	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00950000183198.c.a.b.a.a
Panthera	ANCESTRAL SPECIES	24	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00950000183198.c.a.b.a.a
Tiger	MODERN SPECIES	206					ENSPTIG00000008795	ADNP2 (ENSPTIG00000011252)	ENSPTIG00000011268	ENSPTIG00000011288	TXNL4A (ENSPTIG00000011304)	HSBP1L1 (ENSPTIG00000011319)	ENSPTIG00000011326	ATP9B (ENSPTIG00000011375)	GALR1 (ENSPTIG00000011401)	MBP (ENSPTIG00000011434) #17	ZNF236 (ENSPTIG00000011566) #19	PTGR3 (ENSPTIG00000008802) #22	ENSPTIG00000011611 #23	ZNF407 (ENSPTIG00000011621) #23	CNDP1 (ENSPTIG00000011647)	CNDP2 (ENSPTIG00000011679)	ENSPTIG00000011704	C18orf63 (ENSPTIG00000011710)	CYB5A (ENSPTIG00000011720)	TIMM21 (ENSPTIG00000011728)	FBXO15 (ENSPTIG00000011735)	NETO1 (ENSPTIG00000011758)	ENSPTIG00000011788	SOCS6 (ENSPTIG00000008807)	RTTN (ENSPTIG00000011816)	CD226 (ENSPTIG00000011893)	DOK6 (ENSPTIG00000011903)
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00950000183198.c.a.b.a.a
leopard	MODERN SPECIES	95	RBFA (ENSPPRG00000014340)	ENSPPRG00000014302	TXNL4A (ENSPPRG00000014185)	HSBP1L1 (ENSPPRG00000014154)	SLC66A2 (ENSPPRG00000014124)	KCNG2 (ENSPPRG00000014050)	CTDP1 (ENSPPRG00000014019)	NFATC1 (ENSPPRG00000013969) #13	ATP9B (ENSPPRG00000013726)	GALR1 (ENSPPRG00000013426)	MBP (ENSPPRG00000013404) #17	ZNF236 (ENSPPRG00000012906) #19	ENSPPRG00000012771	ZNF516 (ENSPPRG00000012759) #20	TSHZ1 (ENSPPRG00000011295) #21	PTGR3 (ENSPPRG00000012748) #22	ENSPPRG00000012742 #23	ZNF407 (ENSPPRG00000012723) #23	CNDP1 (ENSPPRG00000012701)	CNDP2 (ENSPPRG00000012633)	DIPK1C (ENSPPRG00000012575)	C18orf63 (ENSPPRG00000012554)	CYB5A (ENSPPRG00000012505)	ENSPPRG00000012387	FBXO15 (ENSPPRG00000012358)	NETO1 (ENSPPRG00000012326)	CBLN2 (ENSPPRG00000012031)
lion	MODERN SPECIES	12	C18orf21 (ENSPLOG00000006945)	RPRD1A (ENSPLOG00000006984)	SLC39A6 (ENSPLOG00000007028)	ELP2 (ENSPLOG00000007229)	MOCOS (ENSPLOG00000007580)	FHOD3 (ENSPLOG00000007767)	ENSPLOG00000008249	KIAA1328 (ENSPLOG00000008318)	CELF4 (ENSPLOG00000008424)	ENSPLOG00000008840	PIK3C3 (ENSPLOG00000008939)	RIT2 (ENSPLOG00000009229)	SYT4 (ENSPLOG00000009364)	ENSPLOG00000009414	TSHZ1 (ENSPLOG00000009446) #21	PTGR3 (ENSPLOG00000009474) #22	ZNF407 (ENSPLOG00000009501) #23	CNDP1 (ENSPLOG00000009562)	DIPK1C (ENSPLOG00000009732)	C18orf63 (ENSPLOG00000009775)	ENSPLOG00000009842	TIMM21 (ENSPLOG00000009879)	FBXO15 (ENSPLOG00000009901)	NETO1 (ENSPLOG00000009969)	CBLN2 (ENSPLOG00000010061)	SOCS6 (ENSPLOG00000010099)	RTTN (ENSPLOG00000010132)	CD226 (ENSPLOG00000010252)	DOK6 (ENSPLOG00000010297)	ENSPLOG00000010331	CCDC102B (ENSPLOG00000010360)
Cat	MODERN SPECIES	243	ENSFCAG00000027544	TXNL4A (ENSFCAG00000000568)	HSBP1L1 (ENSFCAG00000022901)	SLC66A2 (ENSFCAG00000000567)	KCNG2 (ENSFCAG00000040828)	CTDP1 (ENSFCAG00000000566)	NFATC1 (ENSFCAG00000000884) #13	ATP9B (ENSFCAG00000008455)	SALL3 (ENSFCAG00000028839) #14	GALR1 (ENSFCAG00000008682)	ENSFCAG00000053046	MBP (ENSFCAG00000034257) #17	ZNF236 (ENSFCAG00000001780) #19	ZNF516 (ENSFCAG00000031855) #20	TSHZ1 (ENSFCAG00000036924) #21	PTGR3 (ENSFCAG00000008278) #22	ZNF407 (ENSFCAG00000031567) #23	CNDP1 (ENSFCAG00000008275)	CNDP2 (ENSFCAG00000008274)	DIPK1C (ENSFCAG00000008272)	CD3H18orf63 (ENSFCAG00000011958)	CYB5A (ENSFCAG00000029619)	TIMM21 (ENSFCAG00000027980)	FBXO15 (ENSFCAG00000010279)	NETO1 (ENSFCAG00000015031)	CBLN2 (ENSFCAG00000040188)	SOCS6 (ENSFCAG00000009195)	RTTN (ENSFCAG00000009192)	CD226 (ENSFCAG00000023562)	DOK6 (ENSFCAG00000004167)	ENSFCAG00000026408
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446.j #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446.j #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00940000172154	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446.j #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Greater horseshoe bat	MODERN SPECIES	10	RBFA (ENSRFEG00010019882)	TXNL4A (ENSRFEG00010019794)	HSBP1L1 (ENSRFEG00010019755)	ENSRFEG00010019698	KCNG2 (ENSRFEG00010019655)	CTDP1 (ENSRFEG00010019640)	NFATC1 (ENSRFEG00010019522) #13	ATP9B (ENSRFEG00010019457)	ENSRFEG00010019419 #14	GALR1 (ENSRFEG00010019399)	MBP (ENSRFEG00010019222) #17	ENSRFEG00010019164	ZNF236 (ENSRFEG00010019074) #19	ZNF516 (ENSRFEG00010019046) #20	TSHZ1 (ENSRFEG00010019021) #21	PTGR3 (ENSRFEG00010019004) #22	ENSRFEG00010018943 #23	CNDP1 (ENSRFEG00010018609)	CNDP2 (ENSRFEG00010018518)	DIPK1C (ENSRFEG00010018462)	C18orf63 (ENSRFEG00010018438)	CYB5A (ENSRFEG00010018285)	TIMM21 (ENSRFEG00010018249)	FBXO15 (ENSRFEG00010018221)	NETO1 (ENSRFEG00010018182)	CBLN2 (ENSRFEG00010018116)	SOCS6 (ENSRFEG00010018100)	RTTN (ENSRFEG00010017950)	CD226 (ENSRFEG00010017901)	DOK6 (ENSRFEG00010017854)	CCDC102B (ENSRFEG00010017705)
Microbat	MODERN SPECIES	1019										ENSMLUG00000028402	GALR1 (ENSMLUG00000011174)	MBP (ENSMLUG00000011157) #17	ZNF236 (ENSMLUG00000011089) #19	ZNF516 (ENSMLUG00000003250) #20	TSHZ1 (ENSMLUG00000000305) #21	PTGR3 (ENSMLUG00000000306) #22	ZNF407 (ENSMLUG00000001226) #23	CNDP1 (ENSMLUG00000002726)	CNDP2 (ENSMLUG00000002721)	DIPK1C (ENSMLUG00000029517)	C18orf63 (ENSMLUG00000028665)	CYB5A (ENSMLUG00000011462)	TIMM21 (ENSMLUG00000011440)	FBXO15 (ENSMLUG00000011427)	NETO1 (ENSMLUG00000010614)	CBLN2 (ENSMLUG00000004727)	ENSMLUG00000022821	ENSMLUG00000022614	ENSMLUG00000015784	SOCS6 (ENSMLUG00000006873)	RTTN (ENSMLUG00000008228)
Megabat	MODERN SPECIES	8543																PTGR3 (ENSPVAG00000010727) #22
Equus	ANCESTRAL SPECIES	36	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000166650	ENSGT00940000156446.j #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.i	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Horse	MODERN SPECIES	29	ENSECAG00000007419	TXNL4A (ENSECAG00000006468)	TXNL4A (ENSECAG00000055188)	SLC66A2 (ENSECAG00000042673)	KCNG2 (ENSECAG00000034020)	CTDP1 (ENSECAG00000021835)	ENSECAG00000045161	NFATC1 (ENSECAG00000019813)	SALL3 (ENSECAG00000015414) #14	GALR1 (ENSECAG00000014845)	MBP (ENSECAG00000010961) #17	ENSECAG00000050762 #19	ZNF236 (ENSECAG00000005459) #19	ZNF516 (ENSECAG00000003761) #20	TSHZ1 (ENSECAG00000002955) #21	PTGR3 (ENSECAG00000002635) #22	ZNF407 (ENSECAG00000001496) #23	CNDP1 (ENSECAG00000022986)	CNDP2 (ENSECAG00000043835)	DIPK1C (ENSECAG00000018225)	C8H18orf63 (ENSECAG00000017611)	CYB5A (ENSECAG00000017581)	TIMM21 (ENSECAG00000016833)	FBXO15 (ENSECAG00000016377)	NETO1 (ENSECAG00000014149)	CBLN2 (ENSECAG00000033234)	SOCS6 (ENSECAG00000051862)	RTTN (ENSECAG00000009711)	CD226 (ENSECAG00000007623)	DOK6 (ENSECAG00000003159)	ENSECAG00000050818
Donkey	MODERN SPECIES	3	RBFA (ENSEASG00005037791)	ENSEASG00005001925	TXNL4A (ENSEASG00005026566)	HSBP1L1 (ENSEASG00005001945)	SLC66A2 (ENSEASG00005001951)	KCNG2 (ENSEASG00005001957)	CTDP1 (ENSEASG00005001965)	NFATC1 (ENSEASG00005001978) #13	ATP9B (ENSEASG00005002054)	SALL3 (ENSEASG00005002071) #14	GALR1 (ENSEASG00005002075)	MBP (ENSEASG00005002078) #17	ZNF236 (ENSEASG00005002084) #19	ZNF516 (ENSEASG00005002101) #20	TSHZ1 (ENSEASG00005002107) #21	PTGR3 (ENSEASG00005032876) #22	ENSEASG00005023898	ENSEASG00005036048 #23	ENSEASG00005016242	CDH17 (ENSEASG00005016247)	PDP1 (ENSEASG00005031219)	TMEM67 (ENSEASG00005016269)	RBM12B (ENSEASG00005016297)	ENSEASG00005016300	ENSEASG00005031386	TRIQK (ENSEASG00005025608)	RUNX1T1 (ENSEASG00005016311)	SLC26A7 (ENSEASG00005014030)	OTUD6B (ENSEASG00005014036)	PIP4P2 (ENSEASG00005014038)	C8orf88 (ENSEASG00005036654)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00920000149172 #22
Common shrew	MODERN SPECIES	8030																PTGR3 (ENSSARG00000002112) #22
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Glires	ANCESTRAL SPECIES	23	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Rodentia	ANCESTRAL SPECIES	23	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Myomorpha	ANCESTRAL SPECIES	35	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Muroidea	ANCESTRAL SPECIES	73	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00900000143828	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.t	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT01030000234871	ENSGT00940000160839 #20	ENSGT00900000143828	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.t	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Northern American deer mouse	MODERN SPECIES	10	Txnl4a (ENSPEMG00000021776)	Hsbp1l1 (ENSPEMG00000028002)	Slc66a2 (ENSPEMG00000021424)	Kcng2 (ENSPEMG00000026971)	Ctdp1 (ENSPEMG00000022491)	Nfatc1 (ENSPEMG00000022364) #13	Atp9b (ENSPEMG00000023034)	ENSPEMG00000005583	Sall3 (ENSPEMG00000022799) #14	Galr1 (ENSPEMG00000022914)	Mbp (ENSPEMG00000021451) #17	Zfp236 (ENSPEMG00000026320) #19	ENSPEMG00000024427	Zfp516 (ENSPEMG00000024000) #20	Tshz1 (ENSPEMG00000022838) #21	Zadh2 (ENSPEMG00000028418) #22	Zfp407 (ENSPEMG00000019754) #23	Cndp1 (ENSPEMG00000017304)	Cndp2 (ENSPEMG00000020038)	Dipk1c (ENSPEMG00000019790)	Gm17266 (ENSPEMG00000031219)	Cyb5a (ENSPEMG00000020270)	Timm21 (ENSPEMG00000024475)	Fbxo15 (ENSPEMG00000003160)	ENSPEMG00000030444	ENSPEMG00000026675	Neto1 (ENSPEMG00000021247)	Cbln2 (ENSPEMG00000024653)	ENSPEMG00000028176	ENSPEMG00000004621	ENSPEMG00000009228
Prairie vole	MODERN SPECIES	5	Rbfa (ENSMOCG00000018963)	Txnl4a (ENSMOCG00000012922)	Hsbp1l1 (ENSMOCG00000000864)	Slc66a2 (ENSMOCG00000005974)	Kcng2 (ENSMOCG00000011974)	Ctdp1 (ENSMOCG00000017315)	Nfatc1 (ENSMOCG00000017415) #13	Atp9b (ENSMOCG00000015627)	Sall3 (ENSMOCG00000013205) #14	Galr1 (ENSMOCG00000018111)	Mbp (ENSMOCG00000013318) #17	Zfp236 (ENSMOCG00000022870) #19	Zfp516 (ENSMOCG00000021872) #20	ENSMOCG00000016186	Tshz1 (ENSMOCG00000001476) #21	Zadh2 (ENSMOCG00000009189) #22	Zfp407 (ENSMOCG00000015024) #23	Cndp1 (ENSMOCG00000017520)	Cndp2 (ENSMOCG00000008291)	Dipk1c (ENSMOCG00000022218)	Cyb5a (ENSMOCG00000023024)	Timm21 (ENSMOCG00000008519)	Fbxo15 (ENSMOCG00000017161)	ENSMOCG00000021362	Neto1 (ENSMOCG00000021043)	Cbln2 (ENSMOCG00000018040)	ENSMOCG00000002373
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00900000143828	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00940000156770.t	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00390000008041.B	ENSGT00940000157762
Chinese hamster chok1gshd	MODERN SPECIES	92	ENSCGRG00001014779	Hsbp1l1 (ENSCGRG00001020550)	Slc66a2 (ENSCGRG00001024278)	Kcng2 (ENSCGRG00001009283)	Ctdp1 (ENSCGRG00001020255)	ENSCGRG00001000659	Nfatc1 (ENSCGRG00001007565) #13	Atp9b (ENSCGRG00001016871)	Sall3 (ENSCGRG00001018203) #14	Galr1 (ENSCGRG00001023113)	Mbp (ENSCGRG00001015943) #17	Zfp236 (ENSCGRG00001012398) #19	Zfp516 (ENSCGRG00001014360) #20	ENSCGRG00001014546	Tshz1 (ENSCGRG00001020488) #21	Zadh2 (ENSCGRG00001023041) #22	Zfp407 (ENSCGRG00001024334) #23	Cndp1 (ENSCGRG00001017779)	Cndp2 (ENSCGRG00001022839)	Dipk1c (ENSCGRG00001011086)	ENSCGRG00001014845	Cyb5a (ENSCGRG00001020903)	Timm21 (ENSCGRG00001023966)	Fbxo15 (ENSCGRG00001000344)	ENSCGRG00001024329	Neto1 (ENSCGRG00001009379)	ENSCGRG00001018048	Cbln2 (ENSCGRG00001018380)	ENSCGRG00001002314	Socs6 (ENSCGRG00001006036)	Rttn (ENSCGRG00001022256)
Golden Hamster	MODERN SPECIES	619	Adnp2 (ENSMAUG00000012119)	Rbfa (ENSMAUG00000010060)	Txnl4a (ENSMAUG00000021849)	Hsbp1l1 (ENSMAUG00000007227)	Slc66a2 (ENSMAUG00000019704)	Ctdp1 (ENSMAUG00000015399)	Nfatc1 (ENSMAUG00000013597) #13	ENSMAUG00000015980	Sall3 (ENSMAUG00000011828) #14	Galr1 (ENSMAUG00000009153)	ENSMAUG00000000901 #17	ENSMAUG00000015835 #19	ENSMAUG00000002017 #19	Zfp516 (ENSMAUG00000008561) #20	Tshz1 (ENSMAUG00000022081) #21	ENSMAUG00000010942 #22	Zfp407 (ENSMAUG00000006171) #23	Cndp1 (ENSMAUG00000022223)	Cndp2 (ENSMAUG00000021830)	Dipk1c (ENSMAUG00000019914)	ENSMAUG00000009196	Timm21 (ENSMAUG00000020549)	ENSMAUG00000021871	Neto1 (ENSMAUG00000021232)	Cbln2 (ENSMAUG00000011105)	ENSMAUG00000022132	Rttn (ENSMAUG00000022019)	Cd226 (ENSMAUG00000002713)	Dok6 (ENSMAUG00000001321)	Greb1l (ENSMAUG00000013565)	Esco1 (ENSMAUG00000018771)
Murinae	ANCESTRAL SPECIES	17	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Mus	ANCESTRAL SPECIES	19	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00940000164242.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Mus_A	ANCESTRAL SPECIES	19	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00940000164242.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500.c	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Mus_B	ANCESTRAL SPECIES	19	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00940000164242.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500.c	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Mouse	MODERN SPECIES	9	Rbfa (ENSMUSG00000024570)	Naa12 (ENSMUSG00000024571)	Txnl4a (ENSMUSG00000057130)	Hsbp1l1 (ENSMUSG00000078963)	Slc66a2 (ENSMUSG00000034006)	Kcng2 (ENSMUSG00000059852)	Ctdp1 (ENSMUSG00000033323)	Nfatc1 (ENSMUSG00000033016) #13	Atp9b (ENSMUSG00000024566)	Sall3 (ENSMUSG00000024565) #14	Galr1 (ENSMUSG00000024553)	Mbp (ENSMUSG00000041607) #17	Zfp236 (ENSMUSG00000041258) #19	Zfp516 (ENSMUSG00000058881) #20	Tshz1 (ENSMUSG00000046982) #21	Zadh2 (ENSMUSG00000049090) #22	Zfp407 (ENSMUSG00000048410) #23	Cndp1 (ENSMUSG00000056162)	Cndp2 (ENSMUSG00000024644)	Dipk1c (ENSMUSG00000047992)	Gm17266 (ENSMUSG00000117781)	Cyb5a (ENSMUSG00000024646)	Fbxo15 (ENSMUSG00000034391)	Timm21 (ENSMUSG00000024645)	Neto1 (ENSMUSG00000050321)	Cbln2 (ENSMUSG00000024647)	Bhmt1b (ENSMUSG00000069324)	Socs6 (ENSMUSG00000056153)	Rttn (ENSMUSG00000023066)	Cd226 (ENSMUSG00000034028)	Dok6 (ENSMUSG00000073514)
Mus_C	ANCESTRAL SPECIES	16	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00940000164242.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500.c	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00390000003122.c.a.b	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Steppe mouse	MODERN SPECIES	265															Tshz1 (ENSMSIG00000020808) #21	Zadh2 (ENSMSIG00000020815) #22	Zfp407 (ENSMSIG00000020827) #23
spretus	MODERN SPECIES	9	Rbfa (MGP_SPRETEiJ_G0023348)	Naa12 (MGP_SPRETEiJ_G0023349)	Txnl4a (MGP_SPRETEiJ_G0023350)	Hsbp1l1 (MGP_SPRETEiJ_G0023351)	Slc66a2 (MGP_SPRETEiJ_G0023352)	Kcng2 (MGP_SPRETEiJ_G0023353)	Ctdp1 (MGP_SPRETEiJ_G0023354)	Nfatc1 (MGP_SPRETEiJ_G0023355) #13	Atp9b (MGP_SPRETEiJ_G0023356)	Sall3 (MGP_SPRETEiJ_G0023357) #14	Galr1 (MGP_SPRETEiJ_G0023358)	Mbp (MGP_SPRETEiJ_G0023359) #17	Zfp236 (MGP_SPRETEiJ_G0023360) #19	Zfp516 (MGP_SPRETEiJ_G0023361) #20	Tshz1 (MGP_SPRETEiJ_G0023362) #21	Zadh2 (MGP_SPRETEiJ_G0023363) #22	Zfp407 (MGP_SPRETEiJ_G0023364) #23	Cndp1 (MGP_SPRETEiJ_G0023365)	Cndp2 (MGP_SPRETEiJ_G0023366)	MGP_SPRETEiJ_G0023367	Cyb5a (MGP_SPRETEiJ_G0023368)	Fbxo15 (MGP_SPRETEiJ_G0023369)	Timm21 (MGP_SPRETEiJ_G0023370)	Neto1 (MGP_SPRETEiJ_G0023371)	Cbln2 (MGP_SPRETEiJ_G0023372)	MGP_SPRETEiJ_G0023373	MGP_SPRETEiJ_G0023374	Rttn (MGP_SPRETEiJ_G0023375)	Cd226 (MGP_SPRETEiJ_G0023376)	Dok6 (MGP_SPRETEiJ_G0023377)	Tmx3 (MGP_SPRETEiJ_G0023378)
Ryukyu mouse	MODERN SPECIES	9	Rbfa (MGP_CAROLIEiJ_G0022433)	Naa12 (MGP_CAROLIEiJ_G0022434)	Txnl4a (MGP_CAROLIEiJ_G0022435)	Hsbp1l1 (MGP_CAROLIEiJ_G0022436)	Slc66a2 (MGP_CAROLIEiJ_G0022437)	Kcng2 (MGP_CAROLIEiJ_G0022438)	Ctdp1 (MGP_CAROLIEiJ_G0022439)	Nfatc1 (MGP_CAROLIEiJ_G0022440) #13	Atp9b (MGP_CAROLIEiJ_G0022441)	Sall3 (MGP_CAROLIEiJ_G0022442) #14	Galr1 (MGP_CAROLIEiJ_G0022443)	Mbp (MGP_CAROLIEiJ_G0022444) #17	Zfp236 (MGP_CAROLIEiJ_G0022445) #19	Zfp516 (MGP_CAROLIEiJ_G0022446) #20	Tshz1 (MGP_CAROLIEiJ_G0022447) #21	Zadh2 (MGP_CAROLIEiJ_G0022448) #22	Zfp407 (MGP_CAROLIEiJ_G0022449) #23	Cndp1 (MGP_CAROLIEiJ_G0022450)	Cndp2 (MGP_CAROLIEiJ_G0022451)	MGP_CAROLIEiJ_G0022452	Cyb5a (MGP_CAROLIEiJ_G0022453)	Timm21 (MGP_CAROLIEiJ_G0022454)	MGP_CAROLIEiJ_G0022455	Neto1 (MGP_CAROLIEiJ_G0022456)	Cbln2 (MGP_CAROLIEiJ_G0022457)	MGP_CAROLIEiJ_G0022458	Rttn (MGP_CAROLIEiJ_G0022459)	Cd226 (MGP_CAROLIEiJ_G0022460)	Dok6 (MGP_CAROLIEiJ_G0022461)	Tmx3 (MGP_CAROLIEiJ_G0022462)
Shrew mouse	MODERN SPECIES	6	Rbfa (MGP_PahariEiJ_G0019161)	Naa12 (MGP_PahariEiJ_G0019162)	Txnl4a (MGP_PahariEiJ_G0019163)	Hsbp1l1 (MGP_PahariEiJ_G0019164)	Slc66a2 (MGP_PahariEiJ_G0019165)	Kcng2 (MGP_PahariEiJ_G0019166)	Ctdp1 (MGP_PahariEiJ_G0019167)	Nfatc1 (MGP_PahariEiJ_G0019168) #13	Atp9b (MGP_PahariEiJ_G0019169)	Sall3 (MGP_PahariEiJ_G0019170) #14	Galr1 (MGP_PahariEiJ_G0019171)	Mbp (MGP_PahariEiJ_G0019172) #17	Zfp236 (MGP_PahariEiJ_G0019173) #19	Zfp516 (MGP_PahariEiJ_G0019174) #20	Tshz1 (MGP_PahariEiJ_G0019175) #21	Zadh2 (MGP_PahariEiJ_G0019176) #22	Zfp407 (MGP_PahariEiJ_G0019177) #23	Cndp1 (MGP_PahariEiJ_G0019178)	Cndp2 (MGP_PahariEiJ_G0019179)	MGP_PahariEiJ_G0019180	Cyb5a (MGP_PahariEiJ_G0019181)	MGP_PahariEiJ_G0019182	Timm21 (MGP_PahariEiJ_G0019183)	Neto1 (MGP_PahariEiJ_G0019184)	Cbln2 (MGP_PahariEiJ_G0019185)	Socs6 (MGP_PahariEiJ_G0019186)	Rttn (MGP_PahariEiJ_G0019187)	Cd226 (MGP_PahariEiJ_G0019188)	Dok6 (MGP_PahariEiJ_G0019189)	Tmx3 (MGP_PahariEiJ_G0019190)
Rat	MODERN SPECIES	9	Adnp2 (ENSRNOG00000053370)	Rbfa (ENSRNOG00000055647)	RGD1560212 (ENSRNOG00000057774)	Hsbp1l1 (ENSRNOG00000059055)	Slc66a2 (ENSRNOG00000059215)	Kcng2 (ENSRNOG00000053640)	Ctdp1 (ENSRNOG00000061474)	Nfatc1 (ENSRNOG00000017146) #13	Atp9b (ENSRNOG00000032039)	Sall3 (ENSRNOG00000026116) #14	Galr1 (ENSRNOG00000016654)	Mbp (ENSRNOG00000016516) #17	Zfp236 (ENSRNOG00000016303) #19	Zfp516 (ENSRNOG00000016258) #20	Tshz1 (ENSRNOG00000016246) #21	Ptgr3 (ENSRNOG00000016239) #22	Zfp407 (ENSRNOG00000043357) #23	Cndp1 (ENSRNOG00000027739)	Cndp2 (ENSRNOG00000015591)	Dipk1c (ENSRNOG00000015448)	LOC100359752 (ENSRNOG00000038241)	Cyb5a (ENSRNOG00000070068)	Timm21 (ENSRNOG00000015142)	Fbxo15 (ENSRNOG00000038225)	ENSRNOG00000067088	Neto1 (ENSRNOG00000014006)	Cbln2 (ENSRNOG00000013654)	RGD1559726 (ENSRNOG00000034073)	RGD1560813 (ENSRNOG00000013622)	ENSRNOG00000064792	Socs6 (ENSRNOG00000038212)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1543	ENSNGAG00000014501	ENSNGAG00000011961	Slc66a2 (ENSNGAG00000022082)	Kcng2 (ENSNGAG00000024057)	Ctdp1 (ENSNGAG00000003968)	Nfatc1 (ENSNGAG00000023514) #13	Atp9b (ENSNGAG00000021053)	Sall3 (ENSNGAG00000023772) #14	Galr1 (ENSNGAG00000023931)	ENSNGAG00000005493 #8	ENSNGAG00000023281	ENSNGAG00000024328 #17	Zfp236 (ENSNGAG00000011056) #19	Zfp516 (ENSNGAG00000012539) #20	Tshz1 (ENSNGAG00000021600) #21	ENSNGAG00000022733 #22	Zfp407 (ENSNGAG00000012229) #23	Cndp1 (ENSNGAG00000010812)	Cndp2 (ENSNGAG00000022339)	Dipk1c (ENSNGAG00000014549)	Cyb5a (ENSNGAG00000001698)	Timm21 (ENSNGAG00000022926)	Fbxo15 (ENSNGAG00000018318)	Neto1 (ENSNGAG00000014840)	Cbln2 (ENSNGAG00000021579)
Lesser Egyptian jerboa	MODERN SPECIES	55	Snrpd1 (ENSJJAG00000017698)	ENSJJAG00000024289	Greb1l (ENSJJAG00000019827)	Rock1 (ENSJJAG00000012599)	Usp14 (ENSJJAG00000001720)	ENSJJAG00000014893	Colec12 (ENSJJAG00000014240)	Cetn1 (ENSJJAG00000010533)	Tyms (ENSJJAG00000020713)	ENSJJAG00000019240	Yes1 (ENSJJAG00000006110)	Adcyap1 (ENSJJAG00000024315)	Ndc80 (ENSJJAG00000020131)	Zfp516 (ENSJJAG00000016237) #20	ENSJJAG00000017663 #21	Zadh2 (ENSJJAG00000013604) #22	Cndp1 (ENSJJAG00000022953)	Cndp2 (ENSJJAG00000013882)	Cyb5a (ENSJJAG00000020003)	Neto1 (ENSJJAG00000024284)	Cbln2 (ENSJJAG00000021520)	Socs6 (ENSJJAG00000017873)	ENSJJAG00000016953	ENSJJAG00000023825	Dok6 (ENSJJAG00000017009)	ENSJJAG00000011145	Dsel (ENSJJAG00000013330)	ENSJJAG00000018700	Cdh7 (ENSJJAG00000019518)	Serpinb8 (ENSJJAG00000024051)	Serpinb10 (ENSJJAG00000012267)
Kangaroo rat	MODERN SPECIES	410				Pard6g (ENSDORG00000014780)	Adnp2 (ENSDORG00000023278)	ENSDORG00000024699	Slc66a2 (ENSDORG00000011994)	Ctdp1 (ENSDORG00000013560)	Nfatc1 (ENSDORG00000028944) #13	Atp9b (ENSDORG00000002559)	Sall3 (ENSDORG00000002702) #14	Galr1 (ENSDORG00000028616)	ENSDORG00000025113 #17	Zfp236 (ENSDORG00000010273) #19	ENSDORG00000000351 #21	Zadh2 (ENSDORG00000008344) #22	ENSDORG00000030046	ENSDORG00000027679 #23	Cndp1 (ENSDORG00000009688)	Cndp2 (ENSDORG00000009686)	Cyb5a (ENSDORG00000004719)
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Marmotini	ANCESTRAL SPECIES	31	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Alpin marmot	MODERN SPECIES	62	ENSMMMG00000019121	TXNL4A (ENSMMMG00000019114)	HSBP1L1 (ENSMMMG00000019110)	SLC66A2 (ENSMMMG00000019097)	KCNG2 (ENSMMMG00000019094)	CTDP1 (ENSMMMG00000019077)	ENSMMMG00000019069	NFATC1 (ENSMMMG00000019049) #13	ATP9B (ENSMMMG00000018994)	SALL3 (ENSMMMG00000018978) #14	GALR1 (ENSMMMG00000018971)	MBP (ENSMMMG00000018899) #17	ZNF236 (ENSMMMG00000018847) #19	ZNF516 (ENSMMMG00000018790) #20	TSHZ1 (ENSMMMG00000018783) #21	PTGR3 (ENSMMMG00000018782) #22	ZNF407 (ENSMMMG00000018778) #23	CNDP1 (ENSMMMG00000018749)	CNDP2 (ENSMMMG00000018737)	DIPK1C (ENSMMMG00000018726)	C18orf63 (ENSMMMG00000018708)	CYB5A (ENSMMMG00000018693)	TIMM21 (ENSMMMG00000018686)	FBXO15 (ENSMMMG00000018675)	NETO1 (ENSMMMG00000018657)	CBLN2 (ENSMMMG00000018641)	SOCS6 (ENSMMMG00000018573)	RTTN (ENSMMMG00000018533)	ENSMMMG00000018526	DOK6 (ENSMMMG00000018509)	ENSMMMG00000018461
Marmotini_b	ANCESTRAL SPECIES	147	ENSGT00390000011362	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Arctic ground squirrel	MODERN SPECIES	61														ZNF516 (ENSUPAG00010015641) #20	TSHZ1 (ENSUPAG00010015631) #21	PTGR3 (ENSUPAG00010015615) #22	ZNF407 (ENSUPAG00010015601) #23	CNDP1 (ENSUPAG00010015588)	CNDP2 (ENSUPAG00010015570)	DIPK1C (ENSUPAG00010015556)	C18orf63 (ENSUPAG00010015537)	CYB5A (ENSUPAG00010015513)	TIMM21 (ENSUPAG00010015488)	FBXO15 (ENSUPAG00010015463)	NETO1 (ENSUPAG00010015441)	CBLN2 (ENSUPAG00010015415)	SOCS6 (ENSUPAG00010015376)	RTTN (ENSUPAG00010015348)	ENSUPAG00010015339	DOK6 (ENSUPAG00010015325)	ENSUPAG00010015287
Squirrel	MODERN SPECIES	216	RBFA (ENSSTOG00000010308)	ENSSTOG00000021487	TXNL4A (ENSSTOG00000022277)	HSBP1L1 (ENSSTOG00000029821)	SLC66A2 (ENSSTOG00000024050)	KCNG2 (ENSSTOG00000027489)	CTDP1 (ENSSTOG00000011752)	NFATC1 (ENSSTOG00000008168) #13	ATP9B (ENSSTOG00000006826)	SALL3 (ENSSTOG00000004145) #14	GALR1 (ENSSTOG00000007064)	MBP (ENSSTOG00000007051) #17	ZNF236 (ENSSTOG00000006987) #19	ZNF516 (ENSSTOG00000026569) #20	TSHZ1 (ENSSTOG00000019384) #21	PTGR3 (ENSSTOG00000024479) #22	ZNF407 (ENSSTOG00000029099) #23	CNDP2 (ENSSTOG00000002221)	DIPK1C (ENSSTOG00000024256)	ENSSTOG00000022436	TIMM21 (ENSSTOG00000023611)	FBXO15 (ENSSTOG00000014142)
Eurasian red squirrel	MODERN SPECIES	4	TXNL4A (ENSSVLG00005012763)	HSBP1L1 (ENSSVLG00005012711)	SLC66A2 (ENSSVLG00005012630)	KCNG2 (ENSSVLG00005012552)	CTDP1 (ENSSVLG00005012457)	ENSSVLG00005012377	NFATC1 (ENSSVLG00005011217) #13	ENSSVLG00005011078	ATP9B (ENSSVLG00005010928)	SALL3 (ENSSVLG00005010810) #14	GALR1 (ENSSVLG00005010721)	MBP (ENSSVLG00005010263) #17	ZNF236 (ENSSVLG00005009991) #19	ZNF516 (ENSSVLG00005009908) #20	TSHZ1 (ENSSVLG00005009882) #21	PTGR3 (ENSSVLG00005009844) #22	ZNF407 (ENSSVLG00005009770) #23	CNDP1 (ENSSVLG00005009579)	CNDP2 (ENSSVLG00005009505)	DIPK1C (ENSSVLG00005009432)	C18orf63 (ENSSVLG00005009351)	CYB5A (ENSSVLG00005009233)	TIMM21 (ENSSVLG00005009130)	FBXO15 (ENSSVLG00005009033)	NETO1 (ENSSVLG00005008955)	CBLN2 (ENSSVLG00005008889)	SOCS6 (ENSSVLG00005008849)	RTTN (ENSSVLG00005008360)	CD226 (ENSSVLG00005008245)	DOK6 (ENSSVLG00005008178)	CCDC102B (ENSSVLG00005008117)
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00390000010779.a.a.h	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00390000010779.a.a.h	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00530000063631.a	ENSGT00390000011362	ENSGT00390000010779.a.a.h	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022.d
Long-tailed chinchilla	MODERN SPECIES	109	RBFA (ENSCLAG00000012122)	ENSCLAG00000015664	ENSCLAG00000014203	SLC66A2 (ENSCLAG00000008800)	KCNG2 (ENSCLAG00000007825)	CTDP1 (ENSCLAG00000011662)	ENSCLAG00000013642	NFATC1 (ENSCLAG00000009557) #13	ATP9B (ENSCLAG00000010218)	SALL3 (ENSCLAG00000007727) #14	GALR1 (ENSCLAG00000013020)	MBP (ENSCLAG00000014151) #17	ZNF236 (ENSCLAG00000007793) #19	ZNF516 (ENSCLAG00000015957) #20	TSHZ1 (ENSCLAG00000018002) #21	PTGR3 (ENSCLAG00000016929) #22	ENSCLAG00000011969 #23	CNDP1 (ENSCLAG00000008101)	CNDP2 (ENSCLAG00000013139)	DIPK1C (ENSCLAG00000014214)	C18orf63 (ENSCLAG00000008797)	CYB5A (ENSCLAG00000009123)	TIMM21 (ENSCLAG00000010578)	FBXO15 (ENSCLAG00000010080)	NETO1 (ENSCLAG00000009727)	CBLN2 (ENSCLAG00000007487)	ENSCLAG00000007863	ENSCLAG00000013595	SOCS6 (ENSCLAG00000012662)	RTTN (ENSCLAG00000008660)	ENSCLAG00000011300
Degu	MODERN SPECIES	161	ENSODEG00000018937	HSBP1L1 (ENSODEG00000003188)	ENSODEG00000003181	KCNG2 (ENSODEG00000003142)	CTDP1 (ENSODEG00000003029)	ENSODEG00000002960	NFATC1 (ENSODEG00000002866) #13	ATP9B (ENSODEG00000002792)	SALL3 (ENSODEG00000002692) #14	GALR1 (ENSODEG00000002674)	MBP (ENSODEG00000002651) #17	ZNF236 (ENSODEG00000003041) #19	ZNF516 (ENSODEG00000002971) #20	ENSODEG00000002953	ENSODEG00000002943 #21	PTGR3 (ENSODEG00000002932) #22	ENSODEG00000002919 #23	ENSODEG00000018901	ENSODEG00000002905 #23	CNDP1 (ENSODEG00000002852)	CNDP2 (ENSODEG00000002825)	DIPK1C (ENSODEG00000002789)	ENSODEG00000002757	ENSODEG00000018841	ENSODEG00000002747	TIMM21 (ENSODEG00000002726)	FBXO15 (ENSODEG00000002700)	ENSODEG00000002681
Guinea pig	MODERN SPECIES	57															TSHZ1 (ENSCPOG00000009072) #21	PTGR3 (ENSCPOG00000024070) #22	ENSCPOG00000026737 #23	CNDP1 (ENSCPOG00000038292)	CNDP2 (ENSCPOG00000004578)	ENSCPOG00000002230	CYB5A (ENSCPOG00000012111)	TIMM21 (ENSCPOG00000011226)	FBXO15 (ENSCPOG00000006644)	NETO1 (ENSCPOG00000009520)	CBLN2 (ENSCPOG00000002004)	SOCS6 (ENSCPOG00000039204)	RTTN (ENSCPOG00000002661)	CD226 (ENSCPOG00000039994)	DOK6 (ENSCPOG00000003225)	TMX3 (ENSCPOG00000010485)	DSEL (ENSCPOG00000009231)
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000041573	ENSHGLG00000032471	ENSHGLG00000035915	SALL3 (ENSHGLG00000000824) #14	ENSHGLG00000019787	GALR1 (ENSHGLG00000001233)	ENSHGLG00000037792	ENSHGLG00000045815 #17	ENSHGLG00000039076 #17	ENSHGLG00000000648 #19	ENSHGLG00000041344 #19	ENSHGLG00000034199	ENSHGLG00000045035	ENSHGLG00000041384	TSHZ1 (ENSHGLG00000001424) #21	ENSHGLG00000046614 #22	ENSHGLG00000002000	ENSHGLG00000048880	ENSHGLG00000002361	ENSHGLG00000000471 #23	ENSHGLG00000029663	CNDP1 (ENSHGLG00000000854)	CNDP2 (ENSHGLG00000000420)	ENSHGLG00000036803	ENSHGLG00000035284	DIPK1C (ENSHGLG00000032925)	ENSHGLG00000032625	C18orf63 (ENSHGLG00000041217)	CYB5A (ENSHGLG00000036219)	ENSHGLG00000004807	FBXO15 (ENSHGLG00000001715)
Lagomorpha	ANCESTRAL SPECIES	29															ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Rabbit	MODERN SPECIES	20															TSHZ1 (ENSOCUG00000008235) #21	PTGR3 (ENSOCUG00000008234) #22	ZNF407 (ENSOCUG00000004015) #23	CNDP1 (ENSOCUG00000004008)	CNDP2 (ENSOCUG00000004001)	DIPK1C (ENSOCUG00000003995)	C18orf63 (ENSOCUG00000029434)	CYB5A (ENSOCUG00000016235)	ENSOCUG00000014062	ENSOCUG00000011641	NETO1 (ENSOCUG00000007675)	ENSOCUG00000004173	ENSOCUG00000026232	ENSOCUG00000031165	SOCS6 (ENSOCUG00000001076)	ENSOCUG00000032498	RTTN (ENSOCUG00000001384)
Pika	MODERN SPECIES	7233																PTGR3 (ENSOPRG00000008292) #22
Primates	ANCESTRAL SPECIES	24	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00910000145708	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00910000147830	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00910000147830	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993
Hominidae	ANCESTRAL SPECIES	24	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993
Gorilla	MODERN SPECIES	9	TXNL4A (ENSGGOG00000005285)	HSBP1L1 (ENSGGOG00000025369)	SLC66A2 (ENSGGOG00000005278)	ENSGGOG00000005274	CTDP1 (ENSGGOG00000011089)	NFATC1 (ENSGGOG00000006879) #13	ATP9B (ENSGGOG00000008135)	SALL3 (ENSGGOG00000008127) #14	GALR1 (ENSGGOG00000001342)	MBP (ENSGGOG00000009590) #17	ENSGGOG00000036615	ZNF236 (ENSGGOG00000008826) #19	ZNF516 (ENSGGOG00000003996) #20	SMIM21 (ENSGGOG00000001499)	TSHZ1 (ENSGGOG00000005289) #21	PTGR3 (ENSGGOG00000007319) #22	ZNF407 (ENSGGOG00000025018) #23	ENSGGOG00000040979	CNDP1 (ENSGGOG00000016801)	CNDP2 (ENSGGOG00000016794)	DIPK1C (ENSGGOG00000016066)	C18orf63 (ENSGGOG00000014525)	ENSGGOG00000007968	TIMM21 (ENSGGOG00000015941)	FBXO15 (ENSGGOG00000013486)	ENSGGOG00000025925	CBLN2 (ENSGGOG00000009354)	SOCS6 (ENSGGOG00000023191)	RTTN (ENSGGOG00000013129)	CD226 (ENSGGOG00000006047)	DOK6 (ENSGGOG00000003318)
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Pan	ANCESTRAL SPECIES	24	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Chimpanzee	MODERN SPECIES	9	TXNL4A (ENSPTRG00000052385)	HSBP1L1 (ENSPTRG00000038894)	SLC66A2 (ENSPTRG00000010135)	KCNG2 (ENSPTRG00000010134)	CTDP1 (ENSPTRG00000010133)	NFATC1 (ENSPTRG00000010129) #13	ATP9B (ENSPTRG00000010127)	SALL3 (ENSPTRG00000010126) #14	GALR1 (ENSPTRG00000010125)	MBP (ENSPTRG00000010124) #17	ENSPTRG00000043129	ZNF236 (ENSPTRG00000010123) #19	ZNF516 (ENSPTRG00000010121) #20	SMIM21 (ENSPTRG00000042672)	TSHZ1 (ENSPTRG00000010120) #21	PTGR3 (ENSPTRG00000048547) #22	ZNF407 (ENSPTRG00000010117) #23	CNDP1 (ENSPTRG00000010115)	CNDP2 (ENSPTRG00000010114)	DIPK1C (ENSPTRG00000010113)	ENSPTRG00000042747	C18H18orf63 (ENSPTRG00000029279)	ENSPTRG00000044095	CYB5A (ENSPTRG00000010111)	TIMM21 (ENSPTRG00000010110)	FBXO15 (ENSPTRG00000010109)	NETO1 (ENSPTRG00000010108)	CBLN2 (ENSPTRG00000010107)	ENSPTRG00000051922	SOCS6 (ENSPTRG00000010105)	RTTN (ENSPTRG00000010103)
Bonobo	MODERN SPECIES	9	ADNP2 (ENSPPAG00000028735)	RBFA (ENSPPAG00000027669)	TXNL4A (ENSPPAG00000034563)	ENSPPAG00000033010	SLC66A2 (ENSPPAG00000031573)	CTDP1 (ENSPPAG00000042068)	NFATC1 (ENSPPAG00000030766) #13	ATP9B (ENSPPAG00000034175)	ENSPPAG00000029586 #14	GALR1 (ENSPPAG00000028798)	MBP (ENSPPAG00000029936) #17	ENSPPAG00000027666	ZNF236 (ENSPPAG00000038362) #19	ZNF516 (ENSPPAG00000032527) #20	TSHZ1 (ENSPPAG00000029386) #21	PTGR3 (ENSPPAG00000027237) #22	ENSPPAG00000039880 #23	ENSPPAG00000039074 #23	CNDP1 (ENSPPAG00000033478)	CNDP2 (ENSPPAG00000038993)	DIPK1C (ENSPPAG00000041469)	ENSPPAG00000032835	C18orf63 (ENSPPAG00000034652)	ENSPPAG00000031780	CYB5A (ENSPPAG00000027983)	TIMM21 (ENSPPAG00000013034)	FBXO15 (ENSPPAG00000008805)	NETO1 (ENSPPAG00000025619)	ENSPPAG00000041821	SOCS6 (ENSPPAG00000032920)	RTTN (ENSPPAG00000033229)
Human	MODERN SPECIES	9	RBFA (ENSG00000101546)	TXNL4A (ENSG00000141759)	HSBP1L1 (ENSG00000226742)	SLC66A2 (ENSG00000122490)	KCNG2 (ENSG00000178342)	CTDP1 (ENSG00000060069)	NFATC1 (ENSG00000131196) #13	ATP9B (ENSG00000166377)	SALL3 (ENSG00000256463) #14	GALR1 (ENSG00000166573)	MBP (ENSG00000197971) #17	ZNF236 (ENSG00000130856) #19	ZNF516 (ENSG00000101493) #20	SMIM21 (ENSG00000206026)	TSHZ1 (ENSG00000179981) #21	PTGR3 (ENSG00000180011) #22	ZNF407 (ENSG00000215421) #23	CNDP1 (ENSG00000150656)	CNDP2 (ENSG00000133313)	DIPK1C (ENSG00000187773)	C18orf63 (ENSG00000206043)	CYB5A (ENSG00000166347)	TIMM21 (ENSG00000075336)	FBXO15 (ENSG00000141665)	NETO1 (ENSG00000166342)	CBLN2 (ENSG00000141668)	SOCS6 (ENSG00000170677)	RTTN (ENSG00000176225)	CD226 (ENSG00000150637)	DOK6 (ENSG00000206052)	CCDC102B (ENSG00000150636)
Orangutan	MODERN SPECIES	9	RBFA (ENSPPYG00000009264)	TXNL4A (ENSPPYG00000009263)	ENSPPYG00000037420	SLC66A2 (ENSPPYG00000009262)	KCNG2 (ENSPPYG00000009261)	CTDP1 (ENSPPYG00000009259)	NFATC1 (ENSPPYG00000009255) #13	ATP9B (ENSPPYG00000009254)	SALL3 (ENSPPYG00000009253) #14	GALR1 (ENSPPYG00000009252)	MBP (ENSPPYG00000009251) #17	ZNF236 (ENSPPYG00000009250) #19	ZNF516 (ENSPPYG00000009249) #20	ENSPPYG00000037442	TSHZ1 (ENSPPYG00000009248) #21	PTGR3 (ENSPPYG00000009247) #22	ZNF407 (ENSPPYG00000009246) #23	CNDP1 (ENSPPYG00000009244)	CNDP2 (ENSPPYG00000009243)	DIPK1C (ENSPPYG00000009242)	C18orf63 (ENSPPYG00000009241)	CYB5A (ENSPPYG00000009240)	TIMM21 (ENSPPYG00000009239)	FBXO15 (ENSPPYG00000009238)	NETO1 (ENSPPYG00000009237)	CBLN2 (ENSPPYG00000032181)	SOCS6 (ENSPPYG00000009234)	RTTN (ENSPPYG00000009233)	CD226 (ENSPPYG00000009232)	DOK6 (ENSPPYG00000009231)	ENSPPYG00000001363
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00390000015641	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00910000147830	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00390000015641	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00910000147830	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.m.a	ENSGT00910000146991	ENSGT00940000156770.n	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00390000015641	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00910000147830	ENSGT00940000166968	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.m.a	ENSGT00910000146991	ENSGT00940000156770.n	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.m.a	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993
Olive baboon	MODERN SPECIES	10	RBFA (ENSPANG00000009263)	ENSPANG00000037793	HSBP1L1 (ENSPANG00000011076)	SLC66A2 (ENSPANG00000002943)	KCNG2 (ENSPANG00000000968)	CTDP1 (ENSPANG00000012831)	ENSPANG00000042424	NFATC1 (ENSPANG00000014019) #13	ATP9B (ENSPANG00000015208)	SALL3 (ENSPANG00000006485) #14	MBP (ENSPANG00000023229) #17	ZNF236 (ENSPANG00000005965) #19	ENSPANG00000047986	ZNF516 (ENSPANG00000005050) #20	TSHZ1 (ENSPANG00000000181) #21	PTGR3 (ENSPANG00000017718) #22	ZNF407 (ENSPANG00000023161) #23	CNDP1 (ENSPANG00000012761)	DIPK1C (ENSPANG00000026365)	C18orf63 (ENSPANG00000004693)	CYB5A (ENSPANG00000023961)	TIMM21 (ENSPANG00000037593)	FBXO15 (ENSPANG00000039967)	ENSPANG00000000411	ENSPANG00000040840	CBLN2 (ENSPANG00000039023)	ENSPANG00000043001	SOCS6 (ENSPANG00000000352)	RTTN (ENSPANG00000005969)	CD226 (ENSPANG00000001764)	ENSPANG00000050207
Cercopithecinae_d	ANCESTRAL SPECIES	142	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.m.a	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988
Sooty mangabey	MODERN SPECIES	248	SLC66A2 (ENSCATG00000030232)	KCNG2 (ENSCATG00000045098)	CTDP1 (ENSCATG00000032475)	ENSCATG00000042560	NFATC1 (ENSCATG00000029374) #13	ATP9B (ENSCATG00000032665)	SALL3 (ENSCATG00000029727) #14	GALR1 (ENSCATG00000036322)	MBP (ENSCATG00000030245) #17	ENSCATG00000016933	ZNF236 (ENSCATG00000033072) #19	ENSCATG00000017534	ZNF516 (ENSCATG00000035185) #20	ENSCATG00000042018	TSHZ1 (ENSCATG00000038888) #21	PTGR3 (ENSCATG00000032406) #22	ZNF407 (ENSCATG00000000049) #23	ENSCATG00000020154	CNDP1 (ENSCATG00000034582)	CNDP2 (ENSCATG00000030983)	DIPK1C (ENSCATG00000031119)	C18orf63 (ENSCATG00000008394)	ENSCATG00000037734	ENSCATG00000033895	TIMM21 (ENSCATG00000035709)	FBXO15 (ENSCATG00000025306)	NETO1 (ENSCATG00000034226)	CBLN2 (ENSCATG00000036161)
Macaca	ANCESTRAL SPECIES	22	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT00940000159286.b.b	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000160839 #20	ENSGT00910000147830	ENSGT00940000166968	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00910000147812	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.m.a	ENSGT00910000146991	ENSGT00940000156770.n	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00960000192723	ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.a.b.b.b	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.n	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Rhesus	MODERN SPECIES	9	CTDP1 (ENSMMUG00000009151)	ENSMMUG00000055855	ENSMMUG00000057000	ENSMMUG00000064830	ENSMMUG00000054935	NFATC1 (ENSMMUG00000022596) #13	ATP9B (ENSMMUG00000021792)	SALL3 (ENSMMUG00000000286) #14	ENSMMUG00000051418	GALR1 (ENSMMUG00000053003)	MBP (ENSMMUG00000011333) #17	ZNF236 (ENSMMUG00000011329) #19	ENSMMUG00000053081	ZNF516 (ENSMMUG00000017408) #20	TSHZ1 (ENSMMUG00000014916) #21	PTGR3 (ENSMMUG00000014915) #22	ZNF407 (ENSMMUG00000008945) #23	CNDP1 (ENSMMUG00000008942)	ENSMMUG00000058864	DIPK1C (ENSMMUG00000015702)	C18H18orf63 (ENSMMUG00000020905)	CYB5A (ENSMMUG00000013607)	TIMM21 (ENSMMUG00000023299)	FBXO15 (ENSMMUG00000023298)	NETO1 (ENSMMUG00000020595)	CBLN2 (ENSMMUG00000010417)	SOCS6 (ENSMMUG00000058184)	RTTN (ENSMMUG00000010169)	CD226 (ENSMMUG00000052693)	DOK6 (ENSMMUG00000018275)	ENSMMUG00000047378
Crab-eating macaque	MODERN SPECIES	9	NFATC1 (ENSMFAG00000021920) #13	ENSMFAG00000063885	ATP9B (ENSMFAG00000035856)	ENSMFAG00000062575	ENSMFAG00000062135	GALR1 (ENSMFAG00000063435)	ENSMFAG00000041988 #17	ENSMFAG00000056251	ENSMFAG00000059268	ENSMFAG00000057120	ZNF236 (ENSMFAG00000044643) #19	ENSMFAG00000055361	ENSMFAG00000063070	ENSMFAG00000001214	TSHZ1 (ENSMFAG00000037350) #21	PTGR3 (ENSMFAG00000063377) #22	ZNF407 (ENSMFAG00000031607) #23	ENSMFAG00000057469	CNDP1 (ENSMFAG00000036771)	ENSMFAG00000055856	CNDP2 (ENSMFAG00000045912)	ENSMFAG00000024091	C18orf63 (ENSMFAG00000029634)	CYB5A (ENSMFAG00000030228)	TIMM21 (ENSMFAG00000031508)	FBXO15 (ENSMFAG00000031818)	ENSMFAG00000052138	NETO1 (ENSMFAG00000032084)	CBLN2 (ENSMFAG00000033106)	SOCS6 (ENSMFAG00000036046)	RTTN (ENSMFAG00000043259)
Pig-tailed macaque	MODERN SPECIES	154	KCNG2 (ENSMNEG00000035665)	CTDP1 (ENSMNEG00000029480)	NFATC1 (ENSMNEG00000014830) #13	ENSMNEG00000039709	ATP9B (ENSMNEG00000028672)	SALL3 (ENSMNEG00000029916) #14	ENSMNEG00000037566	MBP (ENSMNEG00000008562) #17	ZNF236 (ENSMNEG00000038296) #19	ENSMNEG00000029102	ENSMNEG00000008498	ZNF516 (ENSMNEG00000003940) #20	ENSMNEG00000038263	SMIM21 (ENSMNEG00000034505)	TSHZ1 (ENSMNEG00000031078) #21	PTGR3 (ENSMNEG00000032613) #22	ZNF407 (ENSMNEG00000032620) #23	ENSMNEG00000018895	CNDP1 (ENSMNEG00000041332)	CNDP2 (ENSMNEG00000034380)	DIPK1C (ENSMNEG00000032975)	C18orf63 (ENSMNEG00000032579)	ENSMNEG00000033556	ENSMNEG00000038498	TIMM21 (ENSMNEG00000038734)	FBXO15 (ENSMNEG00000044788)	NETO1 (ENSMNEG00000028773)
Vervet Monkey	MODERN SPECIES	9	KCNG2 (ENSCSAG00000018249)	CTDP1 (ENSCSAG00000018248)	NFATC1 (ENSCSAG00000018247) #13	ATP9B (ENSCSAG00000018245)	SALL3 (ENSCSAG00000018244) #14	ENSCSAG00000018243	MBP (ENSCSAG00000018242) #17	ZNF236 (ENSCSAG00000018240) #19	ENSCSAG00000018239	ENSCSAG00000018238	ZNF516 (ENSCSAG00000018237) #20	ENSCSAG00000018235	SMIM21 (ENSCSAG00000018234)	ENSCSAG00000018233	TSHZ1 (ENSCSAG00000019504) #21	PTGR3 (ENSCSAG00000018232) #22	ZNF407 (ENSCSAG00000018231) #23	CNDP1 (ENSCSAG00000018230)	CNDP2 (ENSCSAG00000018229)	DIPK1C (ENSCSAG00000018228)	C18orf63 (ENSCSAG00000018226)	CYB5A (ENSCSAG00000018225)	TIMM21 (ENSCSAG00000018224)	FBXO15 (ENSCSAG00000018223)	ENSCSAG00000018222	NETO1 (ENSCSAG00000018221)	CBLN2 (ENSCSAG00000018220)	SOCS6 (ENSCSAG00000019505)	RTTN (ENSCSAG00000018219)	CD226 (ENSCSAG00000018218)	ENSCSAG00000018217
Rhinopithecus	ANCESTRAL SPECIES	251				ENSGT00910000147171	ENSGT00940000157616 #13	ENSGT00940000157071.c	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00390000006350.m.a.c.b.a.a.j.a.b	ENSGT00390000006350.m.a.c.b.a.a.j.a.a	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00910000146991	ENSGT00390000011552	ENSGT00390000017498
Black snub-nosed monkey	MODERN SPECIES	2868	CTDP1 (ENSRBIG00000034015)	ENSRBIG00000036509	NFATC1 (ENSRBIG00000037652) #13	ATP9B (ENSRBIG00000037695)	SALL3 (ENSRBIG00000036190) #14	GALR1 (ENSRBIG00000027621)	MBP (ENSRBIG00000037108) #17	ENSRBIG00000031198	ZNF236 (ENSRBIG00000041864) #19	ENSRBIG00000006940	ENSRBIG00000029341	ENSRBIG00000042920	ZNF516 (ENSRBIG00000018664) #20	ENSRBIG00000042967	TSHZ1 (ENSRBIG00000037419) #21	PTGR3 (ENSRBIG00000016720) #22	ZNF407 (ENSRBIG00000032368) #23	CNDP1 (ENSRBIG00000036078)	CNDP2 (ENSRBIG00000032288)	DIPK1C (ENSRBIG00000043465)	C18orf63 (ENSRBIG00000037011)	ENSRBIG00000044446	CYB5A (ENSRBIG00000034037)	TIMM21 (ENSRBIG00000042483)	FBXO15 (ENSRBIG00000038134)
Golden snub-nosed monkey	MODERN SPECIES	3118														ENSRROG00000043270	TSHZ1 (ENSRROG00000014497) #21	PTGR3 (ENSRROG00000032513) #22	ZNF407 (ENSRROG00000041453) #23	CNDP1 (ENSRROG00000033891)	CNDP2 (ENSRROG00000027039)	DIPK1C (ENSRROG00000040593)	ENSRROG00000030908	C18orf63 (ENSRROG00000033253)	ENSRROG00000044278	CYB5A (ENSRROG00000030982)	TIMM21 (ENSRROG00000045064)	FBXO15 (ENSRROG00000031542)
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Cebidae	ANCESTRAL SPECIES	28	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Marmoset	MODERN SPECIES	4	KCNG2 (ENSCJAG00000053684)	CTDP1 (ENSCJAG00000010153)	NFATC1 (ENSCJAG00000023446) #13	ATP9B (ENSCJAG00000007347)	SALL3 (ENSCJAG00000007332) #14	ENSCJAG00000063009	ENSCJAG00000062549	ENSCJAG00000080817	MBP (ENSCJAG00000047439) #17	ZNF236 (ENSCJAG00000008039) #19	ENSCJAG00000084473	ENSCJAG00000082701	ZNF516 (ENSCJAG00000022733) #20	ENSCJAG00000076287	TSHZ1 (ENSCJAG00000046603) #21	PTGR3 (ENSCJAG00000003219) #22	ZNF407 (ENSCJAG00000003204) #23	CNDP1 (ENSCJAG00000003184)	CNDP2 (ENSCJAG00000085960)	DIPK1C (ENSCJAG00000003178)	C18orf63 (ENSCJAG00000003172)	CYB5A (ENSCJAG00000003163)	ENSCJAG00000065780	TIMM21 (ENSCJAG00000043210)	FBXO15 (ENSCJAG00000003151)	ENSCJAG00000073296	NETO1 (ENSCJAG00000003126)	CBLN2 (ENSCJAG00000084858)	ENSCJAG00000054330	ENSCJAG00000071876	ENSCJAG00000081505
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00390000011362	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00940000166220	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Capuchin	MODERN SPECIES	49									ENSCCAG00000021014	MBP (ENSCCAG00000026758) #17	ENSCCAG00000022455	ZNF236 (ENSCCAG00000026594) #19	ZNF516 (ENSCCAG00000027802) #20	ENSCCAG00000024868	TSHZ1 (ENSCCAG00000020568) #21	ZADH2 (ENSCCAG00000026690) #22	ZNF407 (ENSCCAG00000023084) #23	CNDP1 (ENSCCAG00000029722)	CNDP2 (ENSCCAG00000031433)	DIPK1C (ENSCCAG00000022135)	C18orf63 (ENSCCAG00000023366)	CYB5A (ENSCCAG00000029960)	ENSCCAG00000021881	FBXO15 (ENSCCAG00000025771)	NETO1 (ENSCCAG00000034235)	CBLN2 (ENSCCAG00000037222)	SOCS6 (ENSCCAG00000011029)	RTTN (ENSCCAG00000033623)	ENSCCAG00000025716	CD226 (ENSCCAG00000023410)	DOK6 (ENSCCAG00000035565)
Bolivian squirrel monkey	MODERN SPECIES	58	RBFA (ENSSBOG00000024646)	TXNL4A (ENSSBOG00000009093)	HSBP1L1 (ENSSBOG00000022763)	SLC66A2 (ENSSBOG00000027796)	KCNG2 (ENSSBOG00000022849)	CTDP1 (ENSSBOG00000025960)	ATP9B (ENSSBOG00000034933)	SALL3 (ENSSBOG00000023380) #14	ENSSBOG00000025895	MBP (ENSSBOG00000030678) #17	ZNF236 (ENSSBOG00000029994) #19	ENSSBOG00000025494	ZNF516 (ENSSBOG00000027376) #20	ENSSBOG00000005717	TSHZ1 (ENSSBOG00000017309) #21	PTGR3 (ENSSBOG00000035548) #22	ZNF407 (ENSSBOG00000025007) #23	CNDP1 (ENSSBOG00000020895)	CNDP2 (ENSSBOG00000027831)	DIPK1C (ENSSBOG00000024590)	C18orf63 (ENSSBOG00000027206)	CYB5A (ENSSBOG00000006601)	TIMM21 (ENSSBOG00000034325)	FBXO15 (ENSSBOG00000035966)	ENSSBOG00000026756	ENSSBOG00000033127	NETO1 (ENSSBOG00000035887)	CBLN2 (ENSSBOG00000019328)	ENSSBOG00000024747	ENSSBOG00000010853	SOCS6 (ENSSBOG00000020065)
Mas night monkey	MODERN SPECIES	712							ENSANAG00000020890	SALL3 (ENSANAG00000032412) #14	GALR1 (ENSANAG00000030151)	MBP (ENSANAG00000027357) #17	ZNF236 (ENSANAG00000022552) #19	ENSANAG00000038453	ZNF516 (ENSANAG00000024430) #20	ENSANAG00000035939	TSHZ1 (ENSANAG00000016880) #21	PTGR3 (ENSANAG00000035661) #22	ZNF407 (ENSANAG00000026344) #23	CNDP1 (ENSANAG00000031126)	CNDP2 (ENSANAG00000035349)	DIPK1C (ENSANAG00000028265)	C18orf63 (ENSANAG00000028286)	CYB5A (ENSANAG00000020201)	TIMM21 (ENSANAG00000026364)	FBXO15 (ENSANAG00000023790)	NETO1 (ENSANAG00000024199)	CBLN2 (ENSANAG00000032460)	SOCS6 (ENSANAG00000013654)	RTTN (ENSANAG00000030012)	ENSANAG00000028436	CD226 (ENSANAG00000021699)	DOK6 (ENSANAG00000032444)
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00940000162740	ENSGT00390000010779.a.a	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Lemuriformes	ANCESTRAL SPECIES	80										ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Mouse lemur	MODERN SPECIES	10	NFATC1 (ENSMICG00000030578) #13	CTDP1 (ENSMICG00000038031)	KCNG2 (ENSMICG00000036173)	SLC66A2 (ENSMICG00000012807)	HSBP1L1 (ENSMICG00000028958)	ENSMICG00000031799	ENSMICG00000032888	RBFA (ENSMICG00000011956)	ADNP2 (ENSMICG00000036153)	PARD6G (ENSMICG00000011267)	MBP (ENSMICG00000004041) #17	ENSMICG00000026747	ZNF236 (ENSMICG00000004031) #19	ZNF516 (ENSMICG00000000044) #20	TSHZ1 (ENSMICG00000013601) #21	PTGR3 (ENSMICG00000047342) #22	ZNF407 (ENSMICG00000034092) #23	CNDP1 (ENSMICG00000015694)	DIPK1C (ENSMICG00000027176)	CNDP2 (ENSMICG00000012839)	C18orf63 (ENSMICG00000041724)	CYB5A (ENSMICG00000003395)	TIMM21 (ENSMICG00000027988)	FBXO15 (ENSMICG00000035240)	NETO1 (ENSMICG00000007872)	CBLN2 (ENSMICG00000030925)	SOCS6 (ENSMICG00000017585)	RTTN (ENSMICG00000014111)	CD226 (ENSMICG00000029965)	ENSMICG00000027742	DOK6 (ENSMICG00000027937)
Lemuriformes_a	ANCESTRAL SPECIES	175										ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT01030000234871	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847.a	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00940000163731
Coquerels sifaka	MODERN SPECIES	420										GALR1 (ENSPCOG00000015232)	MBP (ENSPCOG00000022672) #17	ENSPCOG00000026660	ZNF236 (ENSPCOG00000003371) #19	ZNF516 (ENSPCOG00000013722) #20	TSHZ1 (ENSPCOG00000010742) #21	PTGR3 (ENSPCOG00000017533) #22	ZNF407 (ENSPCOG00000014861) #23	CNDP1 (ENSPCOG00000013291)	CNDP2 (ENSPCOG00000010165)	DIPK1C (ENSPCOG00000019758)
Greater bamboo lemur	MODERN SPECIES	739										GALR1 (ENSPSMG00000019143)	MBP (ENSPSMG00000019199) #17	ENSPSMG00000019282	ZNF236 (ENSPSMG00000019328) #19	ZNF516 (ENSPSMG00000019344) #20	TSHZ1 (ENSPSMG00000019351) #21	PTGR3 (ENSPSMG00000019354) #22	ZNF407 (ENSPSMG00000019365) #23	ENSPSMG00000019373	ENSPSMG00000019378	CNDP1 (ENSPSMG00000019431)	CNDP2 (ENSPSMG00000019521)	DIPK1C (ENSPSMG00000019555)	C18orf63 (ENSPSMG00000019568)	ENSPSMG00000019619	TIMM21 (ENSPSMG00000019644)	FBXO15 (ENSPSMG00000019651)	NETO1 (ENSPSMG00000019668)	CBLN2 (ENSPSMG00000019694)
Bushbaby	MODERN SPECIES	142	ENSOGAG00000026000	TXNL4A (ENSOGAG00000034753)	SLC66A2 (ENSOGAG00000027223)	KCNG2 (ENSOGAG00000033887)	ENSOGAG00000032618	CTDP1 (ENSOGAG00000026225)	ENSOGAG00000027882	NFATC1 (ENSOGAG00000008159) #13	ATP9B (ENSOGAG00000008156)	SALL3 (ENSOGAG00000031681) #14	ENSOGAG00000012140 #16	MBP (ENSOGAG00000026007) #17	ZNF236 (ENSOGAG00000027487) #19	ZNF516 (ENSOGAG00000033116) #20	TSHZ1 (ENSOGAG00000007341) #21	PTGR3 (ENSOGAG00000007345) #22	ZNF407 (ENSOGAG00000032013) #23	CNDP1 (ENSOGAG00000013478)	CNDP2 (ENSOGAG00000013471)	DIPK1C (ENSOGAG00000025227)	C18orf63 (ENSOGAG00000000053)	CYB5A (ENSOGAG00000000052)	TIMM21 (ENSOGAG00000011596)	FBXO15 (ENSOGAG00000011591)	NETO1 (ENSOGAG00000009869)	CBLN2 (ENSOGAG00000026560)	SOCS6 (ENSOGAG00000034731)	RTTN (ENSOGAG00000015011)	DOK6 (ENSOGAG00000011292)	ENSOGAG00000029434	CCDC102B (ENSOGAG00000000472)
Sauria	ANCESTRAL SPECIES		ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b	ENSGT00930000151022
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000006006	ENSPMRG00000005999	ENSPMRG00000005992	ENSPMRG00000005989	SLC66A2 (ENSPMRG00000005972)	KCNG2 (ENSPMRG00000005962)	CTDP1 (ENSPMRG00000005953)	NFATC1 (ENSPMRG00000005931) #13	ATP9B (ENSPMRG00000005890)	SALL3 (ENSPMRG00000005880) #14	GALR1 (ENSPMRG00000005872)	MBP (ENSPMRG00000005857) #17	ZNF236 (ENSPMRG00000005734) #19	ZNF516 (ENSPMRG00000005707) #20	TSHZ1 (ENSPMRG00000005693) #21	PTGR3 (ENSPMRG00000005687) #22	ENSPMRG00000005678 #23	ENSPMRG00000005671 #23	ENSPMRG00000005664	CNDP1 (ENSPMRG00000005629)	ENSPMRG00000005617	C18orf63 (ENSPMRG00000005600)	DIPK1C (ENSPMRG00000005580)	TIMM21 (ENSPMRG00000005564)	FBXO15 (ENSPMRG00000005551)	ENSPMRG00000005546	ENSPMRG00000005545	NETO1 (ENSPMRG00000005537)	CBLN2 (ENSPMRG00000005526)	ENSPMRG00000005523	RTTN (ENSPMRG00000005202)
Argentine black and white tegu	MODERN SPECIES	4	ENSSMRG00000004656	ENSSMRG00000004653	HSBP1L1 (ENSSMRG00000004652)	SLC66A2 (ENSSMRG00000004648)	KCNG2 (ENSSMRG00000004647)	CTDP1 (ENSSMRG00000004596)	NFATC1 (ENSSMRG00000004483) #13	ATP9B (ENSSMRG00000004423)	SALL3 (ENSSMRG00000004402) #14	ENSSMRG00000004391	ENSSMRG00000004319	MBP (ENSSMRG00000004291) #17	ZNF236 (ENSSMRG00000004202) #19	ZNF516 (ENSSMRG00000004193) #20	TSHZ1 (ENSSMRG00000004177) #21	PTGR3 (ENSSMRG00000004173) #22	ZNF407 (ENSSMRG00000004168) #23	CNDP1 (ENSSMRG00000004094)	ENSSMRG00000004092	CNDP2 (ENSSMRG00000004084)	DIPK1C (ENSSMRG00000004073)	C18orf63 (ENSSMRG00000004070)	CYB5A (ENSSMRG00000004067)	TIMM21 (ENSSMRG00000004064)	FBXO15 (ENSSMRG00000004054)	NETO1 (ENSSMRG00000004045)	CBLN2 (ENSSMRG00000004042)	ENSSMRG00000004035	SOCS6 (ENSSMRG00000004025)	RTTN (ENSSMRG00000004003)	DOK6 (ENSSMRG00000003995)
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022
Elapidae	ANCESTRAL SPECIES	8	ENSGT00390000011362	ENSGT00940000162740.e	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616.b #13	ENSGT00940000157071.n	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446.c #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535.l	ENSGT00500000044993	ENSGT00940000158760	ENSGT00930000151022
Elapidae_a	ANCESTRAL SPECIES	14	ENSGT00390000011362	ENSGT00940000162740.e	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616.b #13	ENSGT00940000157071.n	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446.c #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535.k	ENSGT00640000091535.l	ENSGT00500000044993	ENSGT00940000158760
Acanthophiinae	ANCESTRAL SPECIES	16	ENSGT00390000011362	ENSGT00940000162740.e	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616.b #13	ENSGT00940000157071.n	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446.c #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535.k	ENSGT00500000044993	ENSGT00990000214277	ENSGT00940000158760
Mainland tiger snake	MODERN SPECIES	30	ENSNSUG00000016710	RBFA (ENSNSUG00000016709)	ENSNSUG00000016707	ENSNSUG00000016704	SLC66A2 (ENSNSUG00000016703)	KCNG2 (ENSNSUG00000016702)	CTDP1 (ENSNSUG00000016700)	NFATC1 (ENSNSUG00000016698) #13	ATP9B (ENSNSUG00000013594)	SALL3 (ENSNSUG00000013583) #14	GALR1 (ENSNSUG00000013582)	MBP (ENSNSUG00000013576) #17	ZNF236 (ENSNSUG00000013573) #19	ZNF516 (ENSNSUG00000013572) #20	TSHZ1 (ENSNSUG00000013570) #21	PTGR3 (ENSNSUG00000013569) #22	ZNF407 (ENSNSUG00000013524) #23	CNDP1 (ENSNSUG00000013523)	CNDP2 (ENSNSUG00000013521)	DIPK1C (ENSNSUG00000013519)	C18orf63 (ENSNSUG00000013518)	CYB5A (ENSNSUG00000013517)	TIMM21 (ENSNSUG00000013516)	FBXO15 (ENSNSUG00000013515)
Eastern brown snake	MODERN SPECIES	11	RBFA (ENSPTXG00000000663)	ENSPTXG00000000656	ENSPTXG00000000651	ENSPTXG00000000647	SLC66A2 (ENSPTXG00000000645)	KCNG2 (ENSPTXG00000000642)	CTDP1 (ENSPTXG00000000637)	NFATC1 (ENSPTXG00000000626) #13	ATP9B (ENSPTXG00000000615)	SALL3 (ENSPTXG00000000547) #14	GALR1 (ENSPTXG00000000530)	MBP (ENSPTXG00000000515) #17	ZNF236 (ENSPTXG00000000343) #19	ZNF516 (ENSPTXG00000000238) #20	TSHZ1 (ENSPTXG00000000230) #21	PTGR3 (ENSPTXG00000000213) #22	ZNF407 (ENSPTXG00000000154) #23	CNDP1 (ENSPTXG00000000103)	CNDP2 (ENSPTXG00000000070)	DIPK1C (ENSPTXG00000000057)	ENSPTXG00000000041	CYB5A (ENSPTXG00000017299)	TIMM21 (ENSPTXG00000017298)	FBXO15 (ENSPTXG00000017297)	ENSPTXG00000017296	NETO1 (ENSPTXG00000017295)	CBLN2 (ENSPTXG00000017294)	ENSPTXG00000017293	ENSPTXG00000017292	RTTN (ENSPTXG00000017288)	ENSPTXG00000017285
Blue-lipped sea krait	MODERN SPECIES	385																PTGR3 (ENSLLTG00000015562) #22
Indian cobra	MODERN SPECIES	2	RBFA (ENSNNAG00000015208)	ENSNNAG00000015222	ENSNNAG00000015235	ENSNNAG00000015259	SLC66A2 (ENSNNAG00000015286)	KCNG2 (ENSNNAG00000015316)	CTDP1 (ENSNNAG00000005809)	NFATC1 (ENSNNAG00000006157) #13	ATP9B (ENSNNAG00000006407)	SALL3 (ENSNNAG00000008844) #14	GALR1 (ENSNNAG00000008972)	MBP (ENSNNAG00000009059) #17	ZNF236 (ENSNNAG00000009158) #19	ZNF516 (ENSNNAG00000009905) #20	TSHZ1 (ENSNNAG00000009919) #21	PTGR3 (ENSNNAG00000009930) #22	ENSNNAG00000009958 #23	CNDP1 (ENSNNAG00000009992)	CNDP2 (ENSNNAG00000010123)	DIPK1C (ENSNNAG00000011900)	CYB5A (ENSNNAG00000011918)	TIMM21 (ENSNNAG00000011964)	FBXO15 (ENSNNAG00000011984)	NETO1 (ENSNNAG00000012046)	CBLN2 (ENSNNAG00000012087)	ENSNNAG00000012098	SOCS6 (ENSNNAG00000012131)	ENSNNAG00000012142	ENSNNAG00000012198	ENSNNAG00000012228	DOK6 (ENSNNAG00000012250)
Lizard	MODERN SPECIES	3	ENSACAG00000001310	HSBP1L1 (ENSACAG00000036968)	SLC66A2 (ENSACAG00000035946)	KCNG2 (ENSACAG00000001221)	CTDP1 (ENSACAG00000001148)	NFATC1 (ENSACAG00000000941) #13	ATP9B (ENSACAG00000000552)	SALL3 (ENSACAG00000000478) #14	ENSACAG00000040253	GALR1 (ENSACAG00000005481)	MBP (ENSACAG00000005477) #17	ZNF236 (ENSACAG00000005340) #19	ZNF516 (ENSACAG00000005332) #20	ENSACAG00000038594	TSHZ1 (ENSACAG00000042445) #21	PTGR3 (ENSACAG00000005316) #22	ENSACAG00000042708	ENSACAG00000023951 #23	ENSACAG00000044218	CNDP1 (ENSACAG00000003637)	CNDP2 (ENSACAG00000003653)	DIPK1C (ENSACAG00000003723)	C18orf63 (ENSACAG00000003727)	CYB5A (ENSACAG00000034676)	TIMM21 (ENSACAG00000003778)	FBXO15 (ENSACAG00000003780)	ENSACAG00000042139	NETO1 (ENSACAG00000003789)	CBLN2 (ENSACAG00000003828)	ENSACAG00000042376	ENSACAG00000045415
tuatara	MODERN SPECIES	1321										GALR1 (ENSSPUG00000000828)	ENSSPUG00000000823 #17	ENSSPUG00000000813 #17	ZNF236 (ENSSPUG00000000709) #19	ZNF516 (ENSSPUG00000000695) #20	TSHZ1 (ENSSPUG00000000680) #21	PTGR3 (ENSSPUG00000000667) #22	ENSSPUG00000000651 #23	ENSSPUG00000000620 #23	ENSSPUG00000000570 #23	ENSSPUG00000000546	CNDP1 (ENSSPUG00000000504)	CNDP2 (ENSSPUG00000000484)	DIPK1C (ENSSPUG00000000469)	CYB5A (ENSSPUG00000000463)	ENSSPUG00000000449	ENSSPUG00000000445	TIMM21 (ENSSPUG00000000392)	FBXO15 (ENSSPUG00000000288)
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Archosauria	ANCESTRAL SPECIES		ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00550000076117	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Aves	ANCESTRAL SPECIES	9											ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Neognathae	ANCESTRAL SPECIES		ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a.d	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Golden eagle	MODERN SPECIES	20	GLIPR2 (ENSACCG00020001319)	BLOC1S4 (ENSACCG00020001306)	PARD6G (ENSACCG00020001299)	SCGN (ENSACCG00020001271)	CARMIL1 (ENSACCG00020001099)	RIPOR2 (ENSACCG00020000812)	GMNN (ENSACCG00020013420)	C6orf62 (ENSACCG00020013408)	ACOT13 (ENSACCG00020013391)	TDP2 (ENSACCG00020013366)	GALR1 (ENSACCG00020013352)	MBP (ENSACCG00020013328) #17	ZNF236 (ENSACCG00020013273) #19	ZNF516 (ENSACCG00020013209) #20	TSHZ1 (ENSACCG00020013133) #21	PTGR3 (ENSACCG00020013119) #22	ZNF407 (ENSACCG00020013097) #23	CNDP1 (ENSACCG00020013081)	CNDP2 (ENSACCG00020013045)	DIPK1C (ENSACCG00020013033)	C18orf63 (ENSACCG00020013011)	CYB5A (ENSACCG00020012983)	TIMM21 (ENSACCG00020012965)	FBXO15 (ENSACCG00020012948)	NETO1 (ENSACCG00020012902)	ENSACCG00020012863	CBLN2 (ENSACCG00020012853)	SOCS6 (ENSACCG00020012840)	RTTN (ENSACCG00020012616)	CD226 (ENSACCG00020012523)	DOK6 (ENSACCG00020012502)
Kakapo	MODERN SPECIES		BLOC1S4 (ENSSHBG00005004172)	PARD6G (ENSSHBG00005004167)	SCGN (ENSSHBG00005004158)	CARMIL1 (ENSSHBG00005002905)	ENSSHBG00005002417	ENSSHBG00005002398	GMNN (ENSSHBG00005002373)	C6orf62 (ENSSHBG00005002355)	ACOT13 (ENSSHBG00005002348)	TDP2 (ENSSHBG00005002339)	GALR1 (ENSSHBG00005002321)	MBP (ENSSHBG00005002306) #17	ZNF236 (ENSSHBG00005002251) #19	ZNF516 (ENSSHBG00005002233) #20	TSHZ1 (ENSSHBG00005002225) #21	PTGR3 (ENSSHBG00005002221) #22	ENSSHBG00005002206 #23	CNDP1 (ENSSHBG00005002189)	CNDP2 (ENSSHBG00005002177)	DIPK1C (ENSSHBG00005002169)	C18orf63 (ENSSHBG00005002153)	CYB5A (ENSSHBG00005002134)	TIMM21 (ENSSHBG00005000597)	FBXO15 (ENSSHBG00005000593)	ENSSHBG00005000569	LRRC30 (ENSSHBG00005000506)	LAMA1 (ENSSHBG00005000448)	ARHGAP28 (ENSSHBG00005010310)	TMEM200C (ENSSHBG00005010241)	EPB41L3 (ENSSHBG00005010140)	ZBTB14 (ENSSHBG00005010118)
Passeriformes	ANCESTRAL SPECIES		ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00960000190252	ENSGT00940000158760	ENSGT00730000110960.a.b
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a.h	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00960000190252	ENSGT00940000158760	ENSGT00730000110960.a.b
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a.h	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00960000190252	ENSGT00940000158760	ENSGT00730000110960.a.b
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a.h	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00960000190252	ENSGT00940000158760	ENSGT00730000110960.a.b
Zebra finch	MODERN SPECIES	12	GLIPR2 (ENSTGUG00000027359)	BLOC1S4 (ENSTGUG00000019279)	PARD6G (ENSTGUG00000008898)	SCGN (ENSTGUG00000008902)	CARMIL1 (ENSTGUG00000008921)	RIPOR2 (ENSTGUG00000008974)	GMNN (ENSTGUG00000009018)	C6orf62 (ENSTGUG00000029400)	ENSTGUG00000020283	TDP2 (ENSTGUG00000009035)	GALR1 (ENSTGUG00000024217)	MBP (ENSTGUG00000009051) #17	ZNF236 (ENSTGUG00000009074) #19	ZNF516 (ENSTGUG00000009106) #20	TSHZ1 (ENSTGUG00000009111) #21	PTGR3 (ENSTGUG00000024919) #22	ZNF407 (ENSTGUG00000009124) #23	CNDP1 (ENSTGUG00000009132)	CNDP2 (ENSTGUG00000009147)	DIPK1C (ENSTGUG00000009165)	C18orf63 (ENSTGUG00000024091)	CYB5A (ENSTGUG00000009166)	TIMM21 (ENSTGUG00000023415)	FBXO15 (ENSTGUG00000009178)	NETO1 (ENSTGUG00000009188)	CBLN2 (ENSTGUG00000009205)	SOCS6 (ENSTGUG00000020323)	RTTN (ENSTGUG00000009221)	ENSTGUG00000028827	DOK6 (ENSTGUG00000009250)	DSEL (ENSTGUG00000020055)
Common canary	MODERN SPECIES		GLIPR2 (ENSSCAG00000007302)	BLOC1S4 (ENSSCAG00000007306)	PARD6G (ENSSCAG00000007314)	SCGN (ENSSCAG00000007320)	CARMIL1 (ENSSCAG00000007329)	RIPOR2 (ENSSCAG00000007353)	GMNN (ENSSCAG00000007357)	C6orf62 (ENSSCAG00000007363)	ACOT13 (ENSSCAG00000007367)	TDP2 (ENSSCAG00000007372)	GALR1 (ENSSCAG00000007394)	MBP (ENSSCAG00000007416) #17	ZNF236 (ENSSCAG00000007444) #19	ZNF516 (ENSSCAG00000007476) #20	TSHZ1 (ENSSCAG00000007501) #21	PTGR3 (ENSSCAG00000007510) #22	ZNF407 (ENSSCAG00000007532) #23	CNDP1 (ENSSCAG00000007535)	CNDP2 (ENSSCAG00000007552)	DIPK1C (ENSSCAG00000007558)	C18orf63 (ENSSCAG00000007561)	ENSSCAG00000007566	TIMM21 (ENSSCAG00000007572)	FBXO15 (ENSSCAG00000007578)	NETO1 (ENSSCAG00000007599)	CBLN2 (ENSSCAG00000007603)	SOCS6 (ENSSCAG00000007631)	RTTN (ENSSCAG00000007638)	ENSSCAG00000007655	DOK6 (ENSSCAG00000007671)	ENSSCAG00000007690
Medium ground finch	MODERN SPECIES	14	GLIPR2 (ENSGFOG00000000495)	BLOC1S4 (ENSGFOG00000000516)	PARD6G (ENSGFOG00000000550)	SCGN (ENSGFOG00000000560)	CARMIL1 (ENSGFOG00000000607)	RIPOR2 (ENSGFOG00000000680)	GMNN (ENSGFOG00000000698)	C6orf62 (ENSGFOG00000000703)	ACOT13 (ENSGFOG00000000710)	TDP2 (ENSGFOG00000000715)	GALR1 (ENSGFOG00000000726)	MBP (ENSGFOG00000000734) #17	ZNF236 (ENSGFOG00000000761) #19	ZNF516 (ENSGFOG00000000810) #20	TSHZ1 (ENSGFOG00000000816) #21	PTGR3 (ENSGFOG00000000820) #22	ZNF407 (ENSGFOG00000000825) #23	CNDP1 (ENSGFOG00000000836)	CNDP2 (ENSGFOG00000000844)	DIPK1C (ENSGFOG00000000854)	C18orf63 (ENSGFOG00000000862)	CYB5A (ENSGFOG00000000871)	TIMM21 (ENSGFOG00000000877)	FBXO15 (ENSGFOG00000000888)	NETO1 (ENSGFOG00000000902)	CBLN2 (ENSGFOG00000000930)
Flycatcher	MODERN SPECIES	11	ENSFALG00000025474	ENSFALG00000004757	ENSFALG00000028839	ENSFALG00000004746	SCGN (ENSFALG00000004743)	CARMIL1 (ENSFALG00000004729)	RIPOR2 (ENSFALG00000004725)	GMNN (ENSFALG00000028466)	C6orf62 (ENSFALG00000004718)	GALR1 (ENSFALG00000026015)	TDP2 (ENSFALG00000004710)	MBP (ENSFALG00000004700) #17	ZNF236 (ENSFALG00000004682) #19	ZNF516 (ENSFALG00000004674) #20	TSHZ1 (ENSFALG00000004672) #21	PTGR3 (ENSFALG00000022974) #22	ZNF407 (ENSFALG00000004663) #23	CNDP1 (ENSFALG00000004655)	CNDP2 (ENSFALG00000004651)	DIPK1C (ENSFALG00000026013)	C18orf63 (ENSFALG00000004643)	CYB5A (ENSFALG00000026908)	TIMM21 (ENSFALG00000028573)	FBXO15 (ENSFALG00000023381)	NETO1 (ENSFALG00000004630)	CBLN2 (ENSFALG00000004624)	SOCS6 (ENSFALG00000014598)	RTTN (ENSFALG00000004592)	DOK6 (ENSFALG00000004574)	ENSFALG00000004570	TMX3 (ENSFALG00000024148)
Great tit	MODERN SPECIES	11	GLIPR2 (ENSPMJG00000014169)	ENSPMJG00000014172	PARD6G (ENSPMJG00000014174)	SCGN (ENSPMJG00000014177)	CARMIL1 (ENSPMJG00000014196)	RIPOR2 (ENSPMJG00000014241)	GMNN (ENSPMJG00000014251)	C6orf62 (ENSPMJG00000014252)	ACOT13 (ENSPMJG00000014254)	TDP2 (ENSPMJG00000014256)	GALR1 (ENSPMJG00000014259)	MBP (ENSPMJG00000014269) #17	ZNF236 (ENSPMJG00000014287) #19	ZNF516 (ENSPMJG00000014303) #20	TSHZ1 (ENSPMJG00000014315) #21	PTGR3 (ENSPMJG00000014316) #22	ZNF407 (ENSPMJG00000014319) #23	CNDP1 (ENSPMJG00000014320)	CNDP2 (ENSPMJG00000014321)	DIPK1C (ENSPMJG00000014322)	C18orf63 (ENSPMJG00000014323)	CYB5A (ENSPMJG00000014324)	TIMM21 (ENSPMJG00000014325)	FBXO15 (ENSPMJG00000014326)	NETO1 (ENSPMJG00000014329)	CBLN2 (ENSPMJG00000014331)	SOCS6 (ENSPMJG00000014334)	RTTN (ENSPMJG00000014336)	ENSPMJG00000014337	DOK6 (ENSPMJG00000014338)	ENSPMJG00000014339
Galloanserae	ANCESTRAL SPECIES		ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Anatidae	ANCESTRAL SPECIES	3	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760	ENSGT00730000110960.a.b
Pink-footed goose	MODERN SPECIES	14	GLIPR2 (ENSABRG00000019201)	BLOC1S4 (ENSABRG00000019197)	PARD6G (ENSABRG00000019191)	SCGN (ENSABRG00000019181)	CARMIL1 (ENSABRG00000019131)	RIPOR2 (ENSABRG00000019098)	GMNN (ENSABRG00000019086)	C6orf62 (ENSABRG00000019077)	ACOT13 (ENSABRG00000019070)	TDP2 (ENSABRG00000019066)	ENSABRG00000019054	MBP (ENSABRG00000019050) #17	ZNF236 (ENSABRG00000019008) #19	ZNF516 (ENSABRG00000018997) #20	TSHZ1 (ENSABRG00000018981) #21	PTGR3 (ENSABRG00000018972) #22	ZNF407 (ENSABRG00000018959) #23	CNDP1 (ENSABRG00000018941)	CNDP2 (ENSABRG00000018931)	DIPK1C (ENSABRG00000018929)	C18orf63 (ENSABRG00000018918)	CYB5A (ENSABRG00000018905)	TIMM21 (ENSABRG00000018894)	FBXO15 (ENSABRG00000018889)	NETO1 (ENSABRG00000018829)	CBLN2 (ENSABRG00000018823)	SOCS6 (ENSABRG00000018805)	RTTN (ENSABRG00000018775)	CD226 (ENSABRG00000018763)	DOK6 (ENSABRG00000018757)	ENSABRG00000018730
Duck	MODERN SPECIES	10	BLOC1S4 (ENSAPLG00000011052)	PARD6G (ENSAPLG00000002037)	ENSAPLG00000030440	ENSAPLG00000030691	CARMIL1 (ENSAPLG00000016185)	RIPOR2 (ENSAPLG00000013099)	GMNN (ENSAPLG00000013031)	C6orf62 (ENSAPLG00000013019)	ACOT13 (ENSAPLG00000024331)	TDP2 (ENSAPLG00000030813)	GALR1 (ENSAPLG00000011047)	MBP (ENSAPLG00000014659) #17	ZNF236 (ENSAPLG00000014682) #19	ZNF516 (ENSAPLG00000015083) #20	TSHZ1 (ENSAPLG00000015100) #21	PTGR3 (ENSAPLG00000000703) #22	ENSAPLG00000020727	ZNF407 (ENSAPLG00000015102) #23	CNDP1 (ENSAPLG00000008937)	CNDP2 (ENSAPLG00000009010)	DIPK1C (ENSAPLG00000009958)	ENSAPLG00000028433	CYB5A (ENSAPLG00000025505)	FBXO15 (ENSAPLG00000012462)	NETO1 (ENSAPLG00000009839)	CBLN2 (ENSAPLG00000009670)	ENSAPLG00000030542	ENSAPLG00000021502	ENSAPLG00000008843	ENSAPLG00000030695	DOK6 (ENSAPLG00000008778)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787.u.a #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993.a	ENSGT00940000158760	ENSGT00730000110960.a.b
Japanese quail	MODERN SPECIES	11	GLIPR2 (ENSCJPG00005007076)	BLOC1S4 (ENSCJPG00005007079)	PARD6G (ENSCJPG00005007080)	SCGN (ENSCJPG00005007081)	CARMIL1 (ENSCJPG00005007109)	RIPOR2 (ENSCJPG00005007113)	ENSCJPG00005007117	C6orf62 (ENSCJPG00005007118)	ACOT13 (ENSCJPG00005007119)	TDP2 (ENSCJPG00005007142)	GALR1 (ENSCJPG00005007144)	MBP (ENSCJPG00005007160) #17	ZNF236 (ENSCJPG00005007161) #19	ZNF516 (ENSCJPG00005007179) #20	TSHZ1 (ENSCJPG00005007261) #21	PTGR3 (ENSCJPG00005007262) #22	ZNF407 (ENSCJPG00005007318) #23	CNDP1 (ENSCJPG00005007319)	CNDP2 (ENSCJPG00005007320)	DIPK1C (ENSCJPG00005007321)	C18orf63 (ENSCJPG00005007359)	CYB5A (ENSCJPG00005007362)	FBXO15 (ENSCJPG00005007363)	TIMM21 (ENSCJPG00005007370)	NETO1 (ENSCJPG00005007427)	CBLN2 (ENSCJPG00005007436)	SOCS6 (ENSCJPG00005007455)	RTTN (ENSCJPG00005007458)	CD226 (ENSCJPG00005007459)	DOK6 (ENSCJPG00005007476)	ENSCJPG00005007493
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000020276.rb	ENSGT00390000006790.b	ENSGT00950000183211.a.b	ENSGT00950000183108.a	ENSGT00940000155112.B	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115	ENSGT00390000013934	ENSGT00390000014242	ENSGT00940000159286.b	ENSGT00390000014772.g #17	ENSGT00940000156787.u.a #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993.a	ENSGT00940000158760	ENSGT00940000163731
Turkey	MODERN SPECIES	22	ENSMGAG00000017743	ENSMGAG00000021838	ENSMGAG00000019137	ENSMGAG00000007821	ENSMGAG00000007830	ENSMGAG00000007795	ENSMGAG00000007802	C18orf63 (ENSMGAG00000008208)	ENSMGAG00000008213	TIMM21 (ENSMGAG00000008261)	DIPK1C (ENSMGAG00000008201)	ENSMGAG00000008157	ENSMGAG00000008124	ENSMGAG00000008121 #23	ENSMGAG00000018954	ENSMGAG00000015437 #22	ENSMGAG00000008273	CBLN2 (ENSMGAG00000008302)	ENSMGAG00000008393	ENSMGAG00000021272	ENSMGAG00000008306	SOCS6 (ENSMGAG00000015440)	ENSMGAG00000008509	ENSMGAG00000009700	ENSMGAG00000009739	SMCHD1 (ENSMGAG00000009642)	ENSMGAG00000009591	ENSMGAG00000009626	MYOM1 (ENSMGAG00000009512)	ENSMGAG00000009505	ENSMGAG00000017748
Chicken	MODERN SPECIES	11	BLOC1S4 (ENSGALG00010007943)	PARD6G (ENSGALG00010007945)	ENSGALG00010009189	SCGN (ENSGALG00010007953)	CARMIL1 (ENSGALG00010007973)	FAM65B (ENSGALG00010007994)	GMNN (ENSGALG00010008017)	C2H6ORF62 (ENSGALG00010008027)	ACOT13 (ENSGALG00010008033)	TDP2 (ENSGALG00010008035)	GALR1 (ENSGALG00010007717)	MBP (ENSGALG00010007781) #17	ZNF236 (ENSGALG00010007795) #19	ZNF516 (ENSGALG00010007867) #20	TSHZ1 (ENSGALG00010001153) #21	PTGR3 (ENSGALG00010001154) #22	ZNF407 (ENSGALG00010001229) #23	CNDP1 (ENSGALG00010001231)	CNDP2 (ENSGALG00010001233)	FAM69C (ENSGALG00010001146)	C18orf63 (ENSGALG00010001148)	CYB5A (ENSGALG00010001155)	TIMM21 (ENSGALG00010001157)	FBXO15 (ENSGALG00010002346)	ENSGALG00010001239	NETO1 (ENSGALG00010001254)	ENSGALG00010001259	CBLN2 (ENSGALG00010001268)	SOCS6 (ENSGALG00010001225)	RTTN (ENSGALG00010001159)	ENSGALG00010001162
African ostrich	MODERN SPECIES	444												MBP (ENSSCUG00000010705) #17	ZNF236 (ENSSCUG00000010711) #19	ZNF516 (ENSSCUG00000006686) #20	TSHZ1 (ENSSCUG00000006692) #21	PTGR3 (ENSSCUG00000006693) #22	ZNF407 (ENSSCUG00000006697) #23	CNDP1 (ENSSCUG00000006700)	CNDP2 (ENSSCUG00000006701)	DIPK1C (ENSSCUG00000006706)	C18orf63 (ENSSCUG00000006707)	CYB5A (ENSSCUG00000006710)	TIMM21 (ENSSCUG00000006712)	FBXO15 (ENSSCUG00000006715)	NETO1 (ENSSCUG00000006723)	CBLN2 (ENSSCUG00000006725)	ENSSCUG00000006727
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005004430	ENSCPRG00005004436	ENSCPRG00005004438	ENSCPRG00005004444	SLC66A2 (ENSCPRG00005004499)	KCNG2 (ENSCPRG00005004501)	CTDP1 (ENSCPRG00005004546)	NFATC1 (ENSCPRG00005004588) #13	ATP9B (ENSCPRG00005004634)	SALL3 (ENSCPRG00005004655) #14	GALR1 (ENSCPRG00005004675)	MBP (ENSCPRG00005004693) #17	ZNF236 (ENSCPRG00005004724) #19	ZNF516 (ENSCPRG00005004768) #20	TSHZ1 (ENSCPRG00005004790) #21	PTGR3 (ENSCPRG00005004797) #22	ZNF407 (ENSCPRG00005004813) #23	CNDP1 (ENSCPRG00005004822)	CNDP2 (ENSCPRG00005004864)	DIPK1C (ENSCPRG00005004872)	C18orf63 (ENSCPRG00005004874)	CYB5A (ENSCPRG00005004883)	ENSCPRG00005004956	TIMM21 (ENSCPRG00005005595)	FBXO15 (ENSCPRG00005005597)	ENSCPRG00005005612	NETO1 (ENSCPRG00005005685)	CBLN2 (ENSCPRG00005005790)	ENSCPRG00005005883	SOCS6 (ENSCPRG00005005997)	RTTN (ENSCPRG00005006116)
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00940000162740.f.b	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00990000205958	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839.a #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00990000205958	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071.k	ENSGT00940000159356.a.a #14	ENSGT00960000192768	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839.a #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.nb	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535.g	ENSGT00500000044993	ENSGT00940000158760
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00990000205958	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071.k	ENSGT00940000159356.a.a #14	ENSGT00960000192768	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839.a #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484.c	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.nb	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535.g	ENSGT00500000044993	ENSGT00940000158760
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005009108	ENSGEVG00005009134	ENSGEVG00005009153	SLC66A2 (ENSGEVG00005009207)	KCNG2 (ENSGEVG00005009267)	CTDP1 (ENSGEVG00005009311)	NFATC1 (ENSGEVG00005009488) #13	ATP9B (ENSGEVG00005010218)	SALL3 (ENSGEVG00005010347) #14	ENSGEVG00005010422	GALR1 (ENSGEVG00005010471)	MBP (ENSGEVG00005010577) #17	ZNF236 (ENSGEVG00005010706) #19	ZNF516 (ENSGEVG00005010828) #20	TSHZ1 (ENSGEVG00005010849) #21	PTGR3 (ENSGEVG00005010867) #22	ZNF407 (ENSGEVG00005010897) #23	ENSGEVG00005010963	CNDP1 (ENSGEVG00005011192)	CNDP2 (ENSGEVG00005011450)	DIPK1C (ENSGEVG00005011536)	ENSGEVG00005011584	ENSGEVG00005011682	ENSGEVG00005011727	ENSGEVG00005011868	ENSGEVG00005011903	TIMM21 (ENSGEVG00005011942)	FBXO15 (ENSGEVG00005011997)	NETO1 (ENSGEVG00005012417)	CBLN2 (ENSGEVG00005012554)	SOCS6 (ENSGEVG00005012713)
Abingdon island giant tortoise	MODERN SPECIES	262															TSHZ1 (ENSCABG00000022593) #21	PTGR3 (ENSCABG00000022594) #22
Emydidae	ANCESTRAL SPECIES		ENSGT00940000162740.f.a	ENSGT00390000010779.b	ENSGT00990000205958	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071.k	ENSGT00940000159356.a.a #14	ENSGT00960000192768	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839.a #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770.nb	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535.g	ENSGT00500000044993	ENSGT00940000158760
Three-toed box turtle	MODERN SPECIES	24	RBFA (ENSTMTG00000001492)	ENSTMTG00000001507	ENSTMTG00000001529	SLC66A2 (ENSTMTG00000001538)	KCNG2 (ENSTMTG00000001551)	CTDP1 (ENSTMTG00000001557)	NFATC1 (ENSTMTG00000001575) #13	ATP9B (ENSTMTG00000002000)	SALL3 (ENSTMTG00000007130) #14	ENSTMTG00000007169	GALR1 (ENSTMTG00000007182)	MBP (ENSTMTG00000007225) #17	ZNF236 (ENSTMTG00000007282) #19	ZNF516 (ENSTMTG00000007742) #20	TSHZ1 (ENSTMTG00000007752) #21	PTGR3 (ENSTMTG00000007763) #22	ZNF407 (ENSTMTG00000007768) #23	ENSTMTG00000007793	CNDP1 (ENSTMTG00000007816)	CNDP2 (ENSTMTG00000007881)	DIPK1C (ENSTMTG00000007933)	C18orf63 (ENSTMTG00000007952)	CYB5A (ENSTMTG00000007989)	ENSTMTG00000008008	TIMM21 (ENSTMTG00000008093)	FBXO15 (ENSTMTG00000008121)	NETO1 (ENSTMTG00000008219)	CBLN2 (ENSTMTG00000008252)	SOCS6 (ENSTMTG00000008281)	RTTN (ENSTMTG00000008297)	ENSTMTG00000008420
painted turtle	MODERN SPECIES	2417	ENSCPBG00000006428	ENSCPBG00000006418	ENSCPBG00000006412	ENSCPBG00000006409	SLC66A2 (ENSCPBG00000006405)	KCNG2 (ENSCPBG00000006404)	CTDP1 (ENSCPBG00000004073)	NFATC1 (ENSCPBG00000003948) #13	ATP9B (ENSCPBG00000003736)	SALL3 (ENSCPBG00000003657) #14	GALR1 (ENSCPBG00000003627)	MBP (ENSCPBG00000003570) #17	ZNF236 (ENSCPBG00000003495) #19	ZNF516 (ENSCPBG00000003442) #20	TSHZ1 (ENSCPBG00000003416) #21	PTGR3 (ENSCPBG00000003407) #22	ZNF407 (ENSCPBG00000003382) #23	ENSCPBG00000002680	CNDP1 (ENSCPBG00000002643)	CNDP2 (ENSCPBG00000002620)	DIPK1C (ENSCPBG00000002616)	C18orf63 (ENSCPBG00000002599)	CYB5A (ENSCPBG00000002585)	ENSCPBG00000002553	TIMM21 (ENSCPBG00000028437)	FBXO15 (ENSCPBG00000028436)	NETO1 (ENSCPBG00000028434)	CBLN2 (ENSCPBG00000028433)	ENSCPBG00000028428	SOCS6 (ENSCPBG00000028427)	RTTN (ENSCPBG00000028426)
Chinese turtle	MODERN SPECIES	960														ENSPSIG00000002867 #20	TSHZ1 (ENSPSIG00000002872) #21	PTGR3 (ENSPSIG00000002882) #22	ZNF407 (ENSPSIG00000002896) #23	ENSPSIG00000002898	CNDP1 (ENSPSIG00000002925)	CNDP2 (ENSPSIG00000002975)	DIPK1C (ENSPSIG00000003023)	C18orf63 (ENSPSIG00000003033)	ENSPSIG00000003041	TIMM21 (ENSPSIG00000003061)	FBXO15 (ENSPSIG00000003070)	ENSPSIG00000000399	NETO1 (ENSPSIG00000003161)	CBLN2 (ENSPSIG00000003176)	ENSPSIG00000003179	RTTN (ENSPSIG00000003193)	CD226 (ENSPSIG00000003251)
Anura	ANCESTRAL SPECIES	1	ENSGT00940000162740	ENSGT00390000010779.b	ENSGT01010000229190	ENSGT00390000002381.a	ENSGT00940000160858	ENSGT00390000015641	ENSGT00940000157616 #13	ENSGT00940000157071	ENSGT00940000159356.a.a #14	ENSGT00950000182905.b.l	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014772 #17	ENSGT00940000156787 #19	ENSGT00940000160839 #20	ENSGT00950000183051.a.a #21	ENSGT00920000149172 #22	ENSGT00940000156446 #23	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000156500	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00390000011552	ENSGT00390000017498	ENSGT00940000156700	ENSGT00940000159988	ENSGT00940000154847	ENSGT00640000091535	ENSGT00500000044993	ENSGT00940000158760
Frog	MODERN SPECIES	6	slc66a2.1 (ENSXETG00000025946)	ENSXETG00000041599	kcng2 (ENSXETG00000042247)	ctdp1 (ENSXETG00000000856)	nfatc1 (ENSXETG00000000853) #13	atp9b (ENSXETG00000000852)	sall3 (ENSXETG00000000845) #14	ENSXETG00000014690	ENSXETG00000024894	galr1 (ENSXETG00000014693)	mbp (ENSXETG00000010788) #17	znf236 (ENSXETG00000010789) #19	znf516 (ENSXETG00000039699) #20	ENSXETG00000042220	tshz1 (ENSXETG00000039942) #21	zadh2 (ENSXETG00000037014) #22	znf407 (ENSXETG00000040326) #23	darmin (ENSXETG00000026681)	cndp1 (ENSXETG00000023564)	dipk1c (ENSXETG00000023563)	cndp2 (ENSXETG00000023561)	cyb5a (ENSXETG00000042691)	timm21 (ENSXETG00000023559)	fbxo15 (ENSXETG00000023558)	neto1 (ENSXETG00000016864)	cbln2 (ENSXETG00000016861)	ENSXETG00000035754	socs6 (ENSXETG00000048969)	rttn (ENSXETG00000039976)	ENSXETG00000015643	DOK6 (ENSXETG00000033116)
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000007128	ENSLLEG00000007097	GALR1 (ENSLLEG00000007089)	MBP (ENSLLEG00000006932) #17	ENSLLEG00000006897	ENSLLEG00000006833 #19	ENSLLEG00000006788 #19	ENSLLEG00000006734 #19	ENSLLEG00000006494 #19	ENSLLEG00000006459	ENSLLEG00000006445	ENSLLEG00000006430	ZNF516 (ENSLLEG00000006310) #20	ENSLLEG00000006283	TSHZ1 (ENSLLEG00000006227) #21	PTGR3 (ENSLLEG00000006201) #22	ENSLLEG00000006182	ZNF407 (ENSLLEG00000006125) #23	ENSLLEG00000006007	CNDP1 (ENSLLEG00000005941)	ENSLLEG00000005927	CNDP2 (ENSLLEG00000005785)	DIPK1C (ENSLLEG00000005753)	ENSLLEG00000005738	ENSLLEG00000005729	C18orf63 (ENSLLEG00000005546)	CYB5A (ENSLLEG00000005484)	TIMM21 (ENSLLEG00000005437)	ENSLLEG00000005428	FBXO15 (ENSLLEG00000005352)	ENSLLEG00000029971
Coelacanth	MODERN SPECIES	998													ZNF516 (ENSLACG00000000728) #20	ENSLACG00000011429	TSHZ1 (ENSLACG00000012913) #21	PTGR3 (ENSLACG00000014029) #22