Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT00390000016168.a #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b #9	ENSGT00950000183087.A.a.b.b.g ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Glires	ANCESTRAL SPECIES	24	ENSGT00390000016168.a #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b #9	ENSGT00950000183087.A.a.b.b.g ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00390000016168.a.o #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000161752 #31	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130	ENSGT00950000183018.a.d #36	ENSGT00390000003115 #37	ENSGT00940000154631	ENSGT00940000162897	ENSGT00390000008983.b
Naked mole-rat female	MODERN SPECIES		CCM2 (ENSHGLG00000017450) #7	MYO1G (ENSHGLG00000007954) #8	H2AFV (ENSHGLG00000037585) #9	ENSHGLG00000036983 #10	PPIA (ENSHGLG00000040573) #11	ZMIZ2 (ENSHGLG00000005097) #12	OGDH (ENSHGLG00000008706) #13	TMED4 (ENSHGLG00000019465) #14	DDX56 (ENSHGLG00000017271) #15	NPC1L1 (ENSHGLG00000018856) #16	NUDCD3 (ENSHGLG00000015378) #17	CAMK2B (ENSHGLG00000015797) #18	YKT6 (ENSHGLG00000019116) #19	GCK (ENSHGLG00000019150) #20	MYL7 (ENSHGLG00000018902) #21	POLD2 (ENSHGLG00000014784) #22	POLM (ENSHGLG00000014178) #23	PGAM2 (ENSHGLG00000012441) #24	DBNL (ENSHGLG00000013008) #25	ENSHGLG00000043334 #26	ENSHGLG00000005469 #27	ENSHGLG00000041438 #28	ENSHGLG00000038583 #29	ENSHGLG00000036018 #30	ENSHGLG00000041022 #31	ENSHGLG00000033643 #32	ENSHGLG00000048189 #33	ENSHGLG00000016304 #34	ENSHGLG00000009551 #35	NIPSNAP2 (ENSHGLG00000005574) #36	PSPH (ENSHGLG00000010095) #37
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00390000016168.a.o #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000161752 #31	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130	ENSGT00950000183018.a.d #36	ENSGT00390000003115 #37	ENSGT00940000154631	ENSGT00940000162897	ENSGT00390000008983.b
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00390000016168.a.o #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000161752 #31	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130	ENSGT00950000183018.a.d #36	ENSGT00390000003115 #37	ENSGT00940000154631	ENSGT00390000008983.b	ENSGT00940000158139
Long-tailed chinchilla	MODERN SPECIES	163	NACAD (ENSCLAG00000005578)	CCM2 (ENSCLAG00000006017) #7	MYO1G (ENSCLAG00000004566) #8	ENSCLAG00000007031 #9	ENSCLAG00000006301 ##11	ZMIZ2 (ENSCLAG00000006368) #12	OGDH (ENSCLAG00000016487) #13	TMED4 (ENSCLAG00000011255) #14	DDX56 (ENSCLAG00000007666) #15	NPC1L1 (ENSCLAG00000008529) #16	NUDCD3 (ENSCLAG00000010110) #17	CAMK2B (ENSCLAG00000006106) #18	YKT6 (ENSCLAG00000014974) #19	GCK (ENSCLAG00000004771) #20	MYL7 (ENSCLAG00000009648) #21	POLD2 (ENSCLAG00000005092) #22	AEBP1 (ENSCLAG00000005509)	POLM (ENSCLAG00000007360) #23	PGAM2 (ENSCLAG00000004577) #24	DBNL (ENSCLAG00000005058) #25	UBE2D4 (ENSCLAG00000005618) #26	URGCP (ENSCLAG00000006286) #27	MRPS24 (ENSCLAG00000004732) #28	ENSCLAG00000004813	SEPTIN14 (ENSCLAG00000005493) #31	ZNF713 (ENSCLAG00000007534)	MRPS17 (ENSCLAG00000007650)	NIPSNAP2 (ENSCLAG00000008451) #36	PSPH (ENSCLAG00000008790) #37	CCT6A (ENSCLAG00000004434)	ENSCLAG00000005667
Degu	MODERN SPECIES	76	ENSODEG00000013258 #7	MYO1G (ENSODEG00000014298) #8	PURB (ENSODEG00000014570)	ENSODEG00000013307 #9	ENSODEG00000014266 ##11	ZMIZ2 (ENSODEG00000013173) #12	OGDH (ENSODEG00000013491) #13	TMED4 (ENSODEG00000013873) #14	DDX56 (ENSODEG00000014807) #15	NPC1L1 (ENSODEG00000014236) #16	NUDCD3 (ENSODEG00000014835) #17	CAMK2B (ENSODEG00000014782) #18	ENSODEG00000014119 #19	GCK (ENSODEG00000014198) #20	MYL7 (ENSODEG00000014034) #21	POLD2 (ENSODEG00000014406) #22	AEBP1 (ENSODEG00000015327)	POLM (ENSODEG00000015087) #23	PGAM2 (ENSODEG00000014343) #24	DBNL (ENSODEG00000014896) #25	URGCP (ENSODEG00000015352) #27	MRPS24 (ENSODEG00000016539) #28	ENSODEG00000020219	SEPTIN14 (ENSODEG00000014211) #31	ENSODEG00000015145	NIPSNAP2 (ENSODEG00000014015) #36	PSPH (ENSODEG00000014742) #37	ENSODEG00000014693	PHKG1 (ENSODEG00000014159)	ENSODEG00000014564	ENSODEG00000020198
Guinea pig	MODERN SPECIES	66	TBRG4 (ENSCPOG00000012294)	ENSCPOG00000020626	CCM2 (ENSCPOG00000009887) #7	MYO1G (ENSCPOG00000027389) #8	PURB (ENSCPOG00000033652)	H2AZ2 (ENSCPOG00000036358) #9	ENSCPOG00000002632 ##11	ZMIZ2 (ENSCPOG00000002214) #12	OGDH (ENSCPOG00000003361) #13	TMED4 (ENSCPOG00000030032) #14	DDX56 (ENSCPOG00000003359) #15	NUDCD3 (ENSCPOG00000032095) #17	CAMK2B (ENSCPOG00000019961) #18	YKT6 (ENSCPOG00000039668) #19	GCK (ENSCPOG00000005392) #20	POLD2 (ENSCPOG00000020753) #22	AEBP1 (ENSCPOG00000006383)	POLM (ENSCPOG00000014785) #23	PGAM2 (ENSCPOG00000006665) #24	DBNL (ENSCPOG00000006660) #25	UBE2D4 (ENSCPOG00000038086) #26	URGCP (ENSCPOG00000025608) #27	MRPS24 (ENSCPOG00000036749) #28	SEPTIN14 (ENSCPOG00000009996) #31	ENSCPOG00000038154	NIPSNAP2 (ENSCPOG00000004556) #36	PSPH (ENSCPOG00000039209) #37	CCT6A (ENSCPOG00000006992)	SUMF2 (ENSCPOG00000006993)	PHKG1 (ENSCPOG00000000387)	CHCHD2 (ENSCPOG00000012413)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012.s #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Marmotini	ANCESTRAL SPECIES	37	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT00950000183087.B ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012.s #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153505.a.a.c.a	ENSGT00390000011072	ENSGT00960000189879	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012.s #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153505.a.a.c.a	ENSGT00390000011072	ENSGT00960000189879	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722
Arctic ground squirrel	MODERN SPECIES	214	MYO1G (ENSUPAG00010022057) #8	PURB (ENSUPAG00010022054)	H2AZ2 (ENSUPAG00010022047) #9	ENSUPAG00010022046	ENSUPAG00010022045 ##11	ZMIZ2 (ENSUPAG00010022033) #12	OGDH (ENSUPAG00010021984) #13	TMED4 (ENSUPAG00010021975) #14	DDX56 (ENSUPAG00010021974) #15	NPC1L1 (ENSUPAG00010021963) #16	NUDCD3 (ENSUPAG00010021958) #17	CAMK2B (ENSUPAG00010021102) #18	YKT6 (ENSUPAG00010021076) #19	GCK (ENSUPAG00010021047) #20	MYL7 (ENSUPAG00010021036) #21	POLD2 (ENSUPAG00010021026) #22	AEBP1 (ENSUPAG00010020977)	POLM (ENSUPAG00010020954) #23	PGAM2 (ENSUPAG00010020948) #24	DBNL (ENSUPAG00010020898) #25
Squirrel	MODERN SPECIES	78	CCM2 (ENSSTOG00000026702) #7	MYO1G (ENSSTOG00000004101) #8	H2AZ2 (ENSSTOG00000011533) #9	ENSSTOG00000010215 ##11	ZMIZ2 (ENSSTOG00000010197) #12	OGDH (ENSSTOG00000000469) #13	TMED4 (ENSSTOG00000014658) #14	DDX56 (ENSSTOG00000000464) #15	NPC1L1 (ENSSTOG00000020879) #16	ENSSTOG00000031145	NUDCD3 (ENSSTOG00000000456) #17	CAMK2B (ENSSTOG00000000450) #18	YKT6 (ENSSTOG00000000448) #19	GCK (ENSSTOG00000002740) #20	MYL7 (ENSSTOG00000002725) #21	POLD2 (ENSSTOG00000002713) #22	AEBP1 (ENSSTOG00000002677)	POLM (ENSSTOG00000002662) #23	PGAM2 (ENSSTOG00000008573) #24	DBNL (ENSSTOG00000002644) #25	UBE2D4 (ENSSTOG00000002630) #26	URGCP (ENSSTOG00000010637) #27	MRPS24 (ENSSTOG00000032907) #28	BLVRA (ENSSTOG00000021499)	STK17A (ENSSTOG00000026139)	HECW1 (ENSSTOG00000016043)	MRPL32 (ENSSTOG00000013340)	PSMA2 (ENSSTOG00000013334)	C7orf25 (ENSSTOG00000027844)	GLI3 (ENSSTOG00000020844)	ENSSTOG00000034121
Alpin marmot	MODERN SPECIES	26	CCM2 (ENSMMMG00000014704) #7	MYO1G (ENSMMMG00000014692) #8	ENSMMMG00000014682	ENSMMMG00000014677	ENSMMMG00000014669 ##11	ZMIZ2 (ENSMMMG00000014533) #12	OGDH (ENSMMMG00000014266) #13	ENSMMMG00000014248 #14	DDX56 (ENSMMMG00000014226) #15	NPC1L1 (ENSMMMG00000014118) #16	NUDCD3 (ENSMMMG00000014107) #17	CAMK2B (ENSMMMG00000012507) #18	YKT6 (ENSMMMG00000012487) #19	GCK (ENSMMMG00000012459) #20	MYL7 (ENSMMMG00000012448) #21	POLD2 (ENSMMMG00000012436) #22	ENSMMMG00000012394	POLM (ENSMMMG00000012375) #23	PGAM2 (ENSMMMG00000012371) #24	DBNL (ENSMMMG00000012313) #25	ENSMMMG00000012291 #26	URGCP (ENSMMMG00000012282) #27	MRPS24 (ENSMMMG00000012279) #28	ENSMMMG00000012270	BLVRA (ENSMMMG00000012252)	ENSMMMG00000012217	STK17A (ENSMMMG00000012208)	ENSMMMG00000012200	HECW1 (ENSMMMG00000012160)	ENSMMMG00000012152	MRPL32 (ENSMMMG00000012145)
Eurasian red squirrel	MODERN SPECIES	17	MYO1G (ENSSVLG00005010085) #8	PURB (ENSSVLG00005010055)	ENSSVLG00005009916 #9	ENSSVLG00005009853 ##11	ZMIZ2 (ENSSVLG00005009754) #12	ENSSVLG00005009696 ##9	OGDH (ENSSVLG00005009410) #13	ENSSVLG00005009279 #14	DDX56 (ENSSVLG00005009218) #15	NPC1L1 (ENSSVLG00005008888) #16	NUDCD3 (ENSSVLG00005008781) #17	CAMK2B (ENSSVLG00005007607) #18	ENSSVLG00005007143 #19	GCK (ENSSVLG00005006971) #20	MYL7 (ENSSVLG00005006900) #21	POLD2 (ENSSVLG00005006846) #22	AEBP1 (ENSSVLG00005006770)	POLM (ENSSVLG00005006728) #23	PGAM2 (ENSSVLG00005006699) #24	DBNL (ENSSVLG00005006493) #25	UBE2D4 (ENSSVLG00005006358) #26	ENSSVLG00005006336	URGCP (ENSSVLG00005006226) #27	MRPS24 (ENSSVLG00005006180) #28	ENSSVLG00005006086	BLVRA (ENSSVLG00005006049)	COA1 (ENSSVLG00005006028)	STK17A (ENSSVLG00005005990)	HECW1 (ENSSVLG00005005468)	ENSSVLG00005005320	MRPL32 (ENSSVLG00005005303)
Rodentia_B	ANCESTRAL SPECIES	40	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28
Myomorpha	ANCESTRAL SPECIES	50	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28
Muroidea	ANCESTRAL SPECIES	39	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	869	Myo1g (ENSNGAG00000024269) #8	Purb (ENSNGAG00000022961)	H2az2 (ENSNGAG00000012708) #9	ENSNGAG00000018529 ##11	Zmiz2 (ENSNGAG00000021083) #12	Ogdh (ENSNGAG00000022300) #13	ENSNGAG00000013628	Tmed4 (ENSNGAG00000014114) #14	Ddx56 (ENSNGAG00000018785) #15	Npc1l1 (ENSNGAG00000023026) #16	Nudcd3 (ENSNGAG00000001892) #17	Camk2b (ENSNGAG00000024309) #18	Ykt6 (ENSNGAG00000021621) #19	Gck (ENSNGAG00000022694) #20	Myl7 (ENSNGAG00000010256) #21	Pold2 (ENSNGAG00000023318) #22	Aebp1 (ENSNGAG00000021547)	Polm (ENSNGAG00000024068) #23	Pgam2 (ENSNGAG00000022542) #24	Dbnl (ENSNGAG00000001208) #25	ENSNGAG00000021393 #26	Urgcp (ENSNGAG00000020683) #27	Mrps24 (ENSNGAG00000021383) #28	ENSNGAG00000015149	Ccdc117 (ENSNGAG00000012546)	ENSNGAG00000016645
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a.a.b ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.b ##11	ENSGT00950000183087.A.a.b.b.g.m.a.a.a.b ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	121	Myo1g (ENSCGRG00001017997) #8	Purb (ENSCGRG00001000874)	H2az2 (ENSCGRG00001004602) #9	PPIA (ENSCGRG00001013904) ##11	Zmiz2 (ENSCGRG00001000371) #12	Ogdh (ENSCGRG00001018679) #13	Tmed4 (ENSCGRG00001020468) #14	Ddx56 (ENSCGRG00001019019) #15	Npc1l1 (ENSCGRG00001005429) #16	ENSCGRG00001023520	Nudcd3 (ENSCGRG00001022901) #17	Camk2b (ENSCGRG00001022679) #18	Ykt6 (ENSCGRG00001017336) #19	Gck (ENSCGRG00001009989) #20	Myl7 (ENSCGRG00001016475) #21	Pold2 (ENSCGRG00001012036) #22	Aebp1 (ENSCGRG00001018686)	Polm (ENSCGRG00001014159) #23	Pgam2 (ENSCGRG00001023475) #24	Dbnl (ENSCGRG00001011369) #25	ENSCGRG00001015643 #26	Urgcp (ENSCGRG00001010492) #27	Mrps24 (ENSCGRG00001009085) #28	ENSCGRG00001004440
Golden Hamster	MODERN SPECIES	855	ENSMAUG00000012398	Tbrg4 (ENSMAUG00000012673)	Nacad (ENSMAUG00000000441)	Ccm2 (ENSMAUG00000019206) #7	Purb (ENSMAUG00000011691)	H2az2 (ENSMAUG00000004789) #9	ENSMAUG00000019015 ##11	Ogdh (ENSMAUG00000021826) #13	ENSMAUG00000019569 #15	Npc1l1 (ENSMAUG00000014463) #16	ENSMAUG00000018834	Nudcd3 (ENSMAUG00000015962) #17	Camk2b (ENSMAUG00000019715) #18	ENSMAUG00000017858 #19	Gck (ENSMAUG00000003438) #20	Pold2 (ENSMAUG00000008387) #22	Aebp1 (ENSMAUG00000003120)	ENSMAUG00000008781 #23	Dbnl (ENSMAUG00000020173) #25	ENSMAUG00000007040 #26	Urgcp (ENSMAUG00000000822) #27	Mrps24 (ENSMAUG00000011298) #28	ENSMAUG00000019831
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a.a.a.b ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Prairie vole	MODERN SPECIES	89	Ccm2 (ENSMOCG00000010957) #7	Myo1g (ENSMOCG00000019055) #8	ENSMOCG00000021550 #9	ENSMOCG00000019036 ##11	Zmiz2 (ENSMOCG00000004069) #12	Ogdh (ENSMOCG00000015048) #13	Tmed4 (ENSMOCG00000018994) #14	Ddx56 (ENSMOCG00000016782) #15	Npc1l1 (ENSMOCG00000022891) #16	ENSMOCG00000010822	Nudcd3 (ENSMOCG00000008685) #17	Camk2b (ENSMOCG00000003054) #18	Ykt6 (ENSMOCG00000015485) #19	Gck (ENSMOCG00000007909) #20	Myl7 (ENSMOCG00000001155) #21	Pold2 (ENSMOCG00000020553) #22	Aebp1 (ENSMOCG00000015924)	Polm (ENSMOCG00000017650) #23	Pgam2 (ENSMOCG00000017141) #24	Dbnl (ENSMOCG00000010776) #25	ENSMOCG00000007622 #26	ENSMOCG00000019147 ##27	Mrps24 (ENSMOCG00000009358) #28	ENSMOCG00000001805	Ccdc117 (ENSMOCG00000017474)	ENSMOCG00000016607	Znrf3 (ENSMOCG00000007694)	Kremen1 (ENSMOCG00000006589)	Emid1 (ENSMOCG00000007842)	Rhbdd3 (ENSMOCG00000020377)	Ewsr1 (ENSMOCG00000013671)
Northern American deer mouse	MODERN SPECIES	1	Myo1g (ENSPEMG00000013479) #8	ENSPEMG00000018930	Purb (ENSPEMG00000014786)	H2az2 (ENSPEMG00000013226) #9	Zmiz2 (ENSPEMG00000010648) #12	Ogdh (ENSPEMG00000001741) #13	ENSPEMG00000030252	Tmed4 (ENSPEMG00000004413) #14	Ddx56 (ENSPEMG00000018351) #15	Npc1l1 (ENSPEMG00000014976) #16	Nudcd3 (ENSPEMG00000014178) #17	Camk2b (ENSPEMG00000000806) #18	Ykt6 (ENSPEMG00000012487) #19	Gck (ENSPEMG00000001040) #20	Myl7 (ENSPEMG00000003767) #21	Pold2 (ENSPEMG00000016023) #22	Polm (ENSPEMG00000013953) #23	Pgam2 (ENSPEMG00000016914) #24	Dbnl (ENSPEMG00000002008) #25	ENSPEMG00000010442 #26	Urgcp (ENSPEMG00000018952) #27	Mrps24 (ENSPEMG00000012062) #28	ENSPEMG00000028247	ENSPEMG00000017379	ENSPEMG00000024821	ENSPEMG00000029702	Znrf3 (ENSPEMG00000005713)	Kremen1 (ENSPEMG00000013999)	Emid1 (ENSPEMG00000005971)	Rhbdd3 (ENSPEMG00000006444)	Ewsr1 (ENSPEMG00000018724)
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Mus	ANCESTRAL SPECIES	14	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915 #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915.r #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915.r #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b.db.a
Mouse	MODERN SPECIES	2	Ccm2 (ENSMUSG00000000378) #7	Myo1g (ENSMUSG00000020437) #8	Purb (ENSMUSG00000094483)	H2az2 (ENSMUSG00000041126) #9	Ppia (ENSMUSG00000071866) ##11	Zmiz2 (ENSMUSG00000041164) #12	Ogdh (ENSMUSG00000020456) #13	Tmed4 (ENSMUSG00000004394) #14	Ddx56 (ENSMUSG00000004393) #15	Npc1l1 (ENSMUSG00000020447) #16	Nudcd3 (ENSMUSG00000053838) #17	Camk2b (ENSMUSG00000057897) #18	Ykt6 (ENSMUSG00000002741) #19	Gck (ENSMUSG00000041798) #20	Myl7 (ENSMUSG00000020469) #21	Pold2 (ENSMUSG00000020471) #22	Aebp1 (ENSMUSG00000020473)	Polm (ENSMUSG00000020474) #23	Pgam2 (ENSMUSG00000020475) #24	Dbnl (ENSMUSG00000020476) #25	Urgcp (ENSMUSG00000049680) #27	Mrps24 (ENSMUSG00000020477) #28	Ankrd36 (ENSMUSG00000020481)	Ccdc117 (ENSMUSG00000020482)	Xbp1 (ENSMUSG00000020484)	Znrf3 (ENSMUSG00000041961)	Kremen1 (ENSMUSG00000020393)	Emid1 (ENSMUSG00000034164)	Rhbdd3 (ENSMUSG00000034175)	Ewsr1 (ENSMUSG00000009079)	Rasl10a (ENSMUSG00000034209)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000158053 #8	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b.vb #9	ENSGT00950000183087.A.a.b.b.g.m.a.a ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000160915.r #26	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542	ENSGT00390000013711	ENSGT00940000154191.i.b.db.a
Steppe mouse	MODERN SPECIES	3215	Ccm2 (ENSMSIG00000022897) #7	Myo1g (ENSMSIG00000022846) #8	ENSMSIG00000022839	H2az2 (ENSMSIG00000022792) #9	ENSMSIG00000022760 ##11	Zmiz2 (ENSMSIG00000022569) #12	Ogdh (ENSMSIG00000022343) #13	Tmed4 (ENSMSIG00000022316) #14	Ddx56 (ENSMSIG00000022266) #15	Npc1l1 (ENSMSIG00000022038) #16	Nudcd3 (ENSMSIG00000021993) #17	Camk2b (ENSMSIG00000019343) #18	ENSMSIG00000019289 #19	Gck (ENSMSIG00000019231) #20	Myl7 (ENSMSIG00000019206) #21	Pold2 (ENSMSIG00000019181) #22	Aebp1 (ENSMSIG00000019091)	Polm (ENSMSIG00000019034) #23	Pgam2 (ENSMSIG00000019017) #24	Dbnl (ENSMSIG00000018944) #25	ENSMSIG00000018927 #26	Urgcp (ENSMSIG00000018825) #27	ENSMSIG00000018806 #28	Ankrd36 (ENSMSIG00000018767)	Ccdc117 (ENSMSIG00000018735)	ENSMSIG00000018714	ENSMSIG00000018656	Emid1 (ENSMSIG00000018580)	Rhbdd3 (ENSMSIG00000018562)	ENSMSIG00000017826	Rasl10a (ENSMSIG00000017813)
spretus	MODERN SPECIES	2	Myo1g (MGP_SPRETEiJ_G0016918) #8	Purb (MGP_SPRETEiJ_G0016917)	H2az2 (MGP_SPRETEiJ_G0016916) #9	Ppia (MGP_SPRETEiJ_G0016915) ##11	Zmiz2 (MGP_SPRETEiJ_G0016914) #12	Ogdh (MGP_SPRETEiJ_G0016913) #13	Tmed4 (MGP_SPRETEiJ_G0016912) #14	Ddx56 (MGP_SPRETEiJ_G0016911) #15	Npc1l1 (MGP_SPRETEiJ_G0016910) #16	MGP_SPRETEiJ_G0016909	Nudcd3 (MGP_SPRETEiJ_G0016908) #17	Camk2b (MGP_SPRETEiJ_G0016907) #18	Ykt6 (MGP_SPRETEiJ_G0016906) #19	Gck (MGP_SPRETEiJ_G0016905) #20	Myl7 (MGP_SPRETEiJ_G0016904) #21	Pold2 (MGP_SPRETEiJ_G0016903) #22	Aebp1 (MGP_SPRETEiJ_G0016902)	Polm (MGP_SPRETEiJ_G0016901) #23	Pgam2 (MGP_SPRETEiJ_G0016900) #24	Dbnl (MGP_SPRETEiJ_G0016899) #25	Urgcp (MGP_SPRETEiJ_G0016898) #27	Mrps24 (MGP_SPRETEiJ_G0016897) #28	Ankrd36 (MGP_SPRETEiJ_G0016896)	Ccdc117 (MGP_SPRETEiJ_G0016895)	MGP_SPRETEiJ_G0016894	Znrf3 (MGP_SPRETEiJ_G0016893)	Kremen1 (MGP_SPRETEiJ_G0016892)	Emid1 (MGP_SPRETEiJ_G0016891)	Rhbdd3 (MGP_SPRETEiJ_G0016890)	Ewsr1 (MGP_SPRETEiJ_G0016889)	Rasl10a (MGP_SPRETEiJ_G0016888)
Ryukyu mouse	MODERN SPECIES	2	Ccm2 (MGP_CAROLIEiJ_G0016077) #7	Myo1g (MGP_CAROLIEiJ_G0016076) #8	Purb (MGP_CAROLIEiJ_G0016075)	H2az2 (MGP_CAROLIEiJ_G0016074) #9	Zmiz2 (MGP_CAROLIEiJ_G0016072) #12	Ogdh (MGP_CAROLIEiJ_G0016071) #13	Tmed4 (MGP_CAROLIEiJ_G0016070) #14	Ddx56 (MGP_CAROLIEiJ_G0016069) #15	Npc1l1 (MGP_CAROLIEiJ_G0016068) #16	MGP_CAROLIEiJ_G0016067	Nudcd3 (MGP_CAROLIEiJ_G0016066) #17	Camk2b (MGP_CAROLIEiJ_G0016065) #18	Ykt6 (MGP_CAROLIEiJ_G0016064) #19	Gck (MGP_CAROLIEiJ_G0016063) #20	Myl7 (MGP_CAROLIEiJ_G0016062) #21	Pold2 (MGP_CAROLIEiJ_G0016061) #22	Aebp1 (MGP_CAROLIEiJ_G0016060)	Polm (MGP_CAROLIEiJ_G0016059) #23	Pgam2 (MGP_CAROLIEiJ_G0016058) #24	Dbnl (MGP_CAROLIEiJ_G0016057) #25	Urgcp (MGP_CAROLIEiJ_G0016056) #27	Mrps24 (MGP_CAROLIEiJ_G0016055) #28	Ankrd36 (MGP_CAROLIEiJ_G0016054)	Ccdc117 (MGP_CAROLIEiJ_G0016053)	MGP_CAROLIEiJ_G0016052	Znrf3 (MGP_CAROLIEiJ_G0016051)	Kremen1 (MGP_CAROLIEiJ_G0016050)	Emid1 (MGP_CAROLIEiJ_G0016049)	Rhbdd3 (MGP_CAROLIEiJ_G0016048)	Ewsr1 (MGP_CAROLIEiJ_G0016047)	Rasl10a (MGP_CAROLIEiJ_G0016046)
Shrew mouse	MODERN SPECIES	4	MGP_PahariEiJ_G0016815	Purb (MGP_PahariEiJ_G0016816)	H2az2 (MGP_PahariEiJ_G0016817) #9	Ppia (MGP_PahariEiJ_G0016818) ##11	Zmiz2 (MGP_PahariEiJ_G0016819) #12	Ogdh (MGP_PahariEiJ_G0016820) #13	Tmed4 (MGP_PahariEiJ_G0016821) #14	Ddx56 (MGP_PahariEiJ_G0016822) #15	Npc1l1 (MGP_PahariEiJ_G0016823) #16	MGP_PahariEiJ_G0016824	Nudcd3 (MGP_PahariEiJ_G0016825) #17	Camk2b (MGP_PahariEiJ_G0016826) #18	Ykt6 (MGP_PahariEiJ_G0016827) #19	Gck (MGP_PahariEiJ_G0016828) #20	Myl7 (MGP_PahariEiJ_G0016829) #21	Pold2 (MGP_PahariEiJ_G0016830) #22	Aebp1 (MGP_PahariEiJ_G0016831)	Polm (MGP_PahariEiJ_G0016832) #23	Pgam2 (MGP_PahariEiJ_G0016833) #24	Dbnl (MGP_PahariEiJ_G0016834) #25	Urgcp (MGP_PahariEiJ_G0016835) #27	Mrps24 (MGP_PahariEiJ_G0016836) #28	Ankrd36 (MGP_PahariEiJ_G0016837)	Ccdc117 (MGP_PahariEiJ_G0016838)	MGP_PahariEiJ_G0016839	Znrf3 (MGP_PahariEiJ_G0016840)	Kremen1 (MGP_PahariEiJ_G0016841)	Emid1 (MGP_PahariEiJ_G0016842)	Rhbdd3 (MGP_PahariEiJ_G0016843)	Ewsr1 (MGP_PahariEiJ_G0016844)	Gas2l1 (MGP_PahariEiJ_G0016845)
Rat	MODERN SPECIES	5	ENSRNOG00000062895	Purb (ENSRNOG00000069265)	AC106663.1 (ENSRNOG00000055372)	H2az2 (ENSRNOG00000052275) #9	Ppia (ENSRNOG00000027864) ##11	Zmiz2 (ENSRNOG00000025923) #12	Ogdh (ENSRNOG00000005130) #13	Tmed4 (ENSRNOG00000005016) #14	Ddx56 (ENSRNOG00000004670) #15	Npc1l1 (ENSRNOG00000049955) #16	Nudcd3 (ENSRNOG00000056148) #17	Camk2b (ENSRNOG00000052080) #18	Ykt6 (ENSRNOG00000014785) #19	Gck (ENSRNOG00000061527) #20	Myl7 (ENSRNOG00000014409) #21	Pold2 (ENSRNOG00000014098) #22	Aebp1 (ENSRNOG00000013720)	Polm (ENSRNOG00000013647) #23	Pgam2 (ENSRNOG00000013532) #24	Dbnl (ENSRNOG00000012378) #25	Urgcp (ENSRNOG00000012184) #27	Mrps24 (ENSRNOG00000011979) #28	ENSRNOG00000069799	AC136588.2 (ENSRNOG00000030988)	Ankrd36 (ENSRNOG00000056767)	Ccdc117 (ENSRNOG00000010706)	Xbp1 (ENSRNOG00000010298)	Znrf3 (ENSRNOG00000067305)	Kremen1 (ENSRNOG00000051487)	Emid1 (ENSRNOG00000033575)	Rhbdd3 (ENSRNOG00000027032)
Lesser Egyptian jerboa	MODERN SPECIES	49	Ccm2 (ENSJJAG00000019879) #7	Myo1g (ENSJJAG00000000683) #8	Purb (ENSJJAG00000012921)	ENSJJAG00000012094 #9	ENSJJAG00000015423 ##11	Zmiz2 (ENSJJAG00000023115) #12	Ogdh (ENSJJAG00000007589) #13	Tmed4 (ENSJJAG00000005100) #14	Ddx56 (ENSJJAG00000014269) #15	Npc1l1 (ENSJJAG00000019937) #16	Nudcd3 (ENSJJAG00000024120) #17	Camk2b (ENSJJAG00000012313) #18	ENSJJAG00000024358 #19	Gck (ENSJJAG00000020695) #20	Myl7 (ENSJJAG00000023280) #21	Pold2 (ENSJJAG00000013260) #22	Aebp1 (ENSJJAG00000006815)	Polm (ENSJJAG00000005659) #23	Pgam2 (ENSJJAG00000006198) #24	Dbnl (ENSJJAG00000019824) #25	ENSJJAG00000013146 #26	ENSJJAG00000016812 #27	Mrps24 (ENSJJAG00000011276) #28	Smg1 (ENSJJAG00000018008)	ENSJJAG00000017362	ENSJJAG00000021154	Bmper (ENSJJAG00000009850)	Bbs9 (ENSJJAG00000003244)	Phtf2 (ENSJJAG00000007015)	ENSJJAG00000012291	Rsbn1l (ENSJJAG00000017941)
Kangaroo rat	MODERN SPECIES	479	Ramp3 (ENSDORG00000010667)	Tbrg4 (ENSDORG00000013979)	Ccm2 (ENSDORG00000001173) #7	Myo1g (ENSDORG00000008897) #8	ENSDORG00000000793 ##9	Zmiz2 (ENSDORG00000003702) #12	Ogdh (ENSDORG00000014528) #13	Tmed4 (ENSDORG00000025102) #14	ENSDORG00000026173 #15	Npc1l1 (ENSDORG00000004156) #16	Nudcd3 (ENSDORG00000024793) #17	Camk2b (ENSDORG00000016394) #18	Ykt6 (ENSDORG00000016393) #19	Gck (ENSDORG00000016392) #20	Myl7 (ENSDORG00000016391) #21	Pold2 (ENSDORG00000005386) #22	Aebp1 (ENSDORG00000005385)	Polm (ENSDORG00000006893) #23	Pgam2 (ENSDORG00000024532) #24	Dbnl (ENSDORG00000006890) #25	Urgcp (ENSDORG00000009971) #27	Mrps24 (ENSDORG00000028469) #28
Lagomorpha	ANCESTRAL SPECIES	146	ENSGT00730000111762	ENSGT01030000234607.A.a.b.a	ENSGT00940000161501	ENSGT00390000016168.a #7	ENSGT00940000158053 #8	ENSGT00900000140979.a.b #9	ENSGT00950000183087.A.a.a.b #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00390000006780 #22	ENSGT00940000158323	ENSGT00940000158490 #23	ENSGT00950000182926.b.c #24	ENSGT00940000156732 #25	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28
Rabbit	MODERN SPECIES	1	ENSOCUG00000039640 #8	ENSOCUG00000024216 #8	ENSOCUG00000008133 #9	ENSOCUG00000016662 #11	ZMIZ2 (ENSOCUG00000022046) #12	OGDH (ENSOCUG00000002419) #13	TMED4 (ENSOCUG00000003964) #14	DDX56 (ENSOCUG00000022918) #15	NPC1L1 (ENSOCUG00000023032) #16	ENSOCUG00000023828 #17	ENSOCUG00000021803	ENSOCUG00000002981	ENSOCUG00000001018 #20	ENSOCUG00000036640	AEBP1 (ENSOCUG00000014914)	POLD2 (ENSOCUG00000014942) #22	POLM (ENSOCUG00000022428) #23	PGAM2 (ENSOCUG00000027853) #24	ENSOCUG00000027855 #25	ENSOCUG00000031138	ENSOCUG00000010530 #27	ENSOCUG00000021755 #28	ENSOCUG00000033651	SEMA3A (ENSOCUG00000011919)	SEMA3D (ENSOCUG00000012016)	GRM3 (ENSOCUG00000007359)	ELAPOR2 (ENSOCUG00000007364)	DMTF1 (ENSOCUG00000009179)	TMEM243 (ENSOCUG00000009187)	CROT (ENSOCUG00000010544)	ABCB1 (ENSOCUG00000014981)
Pika	MODERN SPECIES	720																POLD2 (ENSOPRG00000006241) #22	AEBP1 (ENSOPRG00000006212)	POLM (ENSOPRG00000006193) #23