Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000158053 #8	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00390000016168.a.o #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000161752 #30	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130 #31	ENSGT00950000183018.a.d #32	ENSGT00390000003115 #33	ENSGT00940000154631	ENSGT00940000162897	ENSGT00390000008983.b #34
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00390000016168.a.o #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000161752 #30	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130 #31	ENSGT00950000183018.a.d #32	ENSGT00390000003115 #33	ENSGT00940000154631	ENSGT00940000162897	ENSGT00390000008983.b #34
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00390000016168.a.o #7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012 #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000161752 #30	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130 #31	ENSGT00950000183018.a.d #32	ENSGT00390000003115 #33	ENSGT00940000154631	ENSGT00390000008983.b #34	ENSGT00940000158139 #35
Degu	MODERN SPECIES	76	ENSODEG00000013258 #7	MYO1G (ENSODEG00000014298) #8	PURB (ENSODEG00000014570) #9	ENSODEG00000013307 #10	ENSODEG00000014266 #11	ZMIZ2 (ENSODEG00000013173) #12	OGDH (ENSODEG00000013491) #13	TMED4 (ENSODEG00000013873) #14	DDX56 (ENSODEG00000014807) #15	NPC1L1 (ENSODEG00000014236) #16	NUDCD3 (ENSODEG00000014835) #17	CAMK2B (ENSODEG00000014782) #18	ENSODEG00000014119 #19	GCK (ENSODEG00000014198) #20	MYL7 (ENSODEG00000014034) #21	POLD2 (ENSODEG00000014406) #22	AEBP1 (ENSODEG00000015327) #23	POLM (ENSODEG00000015087) #24	PGAM2 (ENSODEG00000014343) #25	DBNL (ENSODEG00000014896) #26	URGCP (ENSODEG00000015352) #27	MRPS24 (ENSODEG00000016539) #28	ENSODEG00000020219 #29	SEPTIN14 (ENSODEG00000014211) #30	ENSODEG00000015145 #31	NIPSNAP2 (ENSODEG00000014015) #32	PSPH (ENSODEG00000014742) #33	ENSODEG00000014693 #34	PHKG1 (ENSODEG00000014159) #35	ENSODEG00000014564 #36	ENSODEG00000020198 #37
Long-tailed chinchilla	MODERN SPECIES	163	NACAD (ENSCLAG00000005578)	CCM2 (ENSCLAG00000006017) #7	MYO1G (ENSCLAG00000004566) #8	ENSCLAG00000007031 #10	ENSCLAG00000006301 ##11	ZMIZ2 (ENSCLAG00000006368) #12	OGDH (ENSCLAG00000016487) #13	TMED4 (ENSCLAG00000011255) #14	DDX56 (ENSCLAG00000007666) #15	NPC1L1 (ENSCLAG00000008529) #16	NUDCD3 (ENSCLAG00000010110) #17	CAMK2B (ENSCLAG00000006106) #18	YKT6 (ENSCLAG00000014974) #19	GCK (ENSCLAG00000004771) #20	MYL7 (ENSCLAG00000009648) #21	POLD2 (ENSCLAG00000005092) #22	AEBP1 (ENSCLAG00000005509) #23	POLM (ENSCLAG00000007360) #24	PGAM2 (ENSCLAG00000004577) #25	DBNL (ENSCLAG00000005058) #26	UBE2D4 (ENSCLAG00000005618)	URGCP (ENSCLAG00000006286) #27	MRPS24 (ENSCLAG00000004732) #28	ENSCLAG00000004813	SEPTIN14 (ENSCLAG00000005493) #30	ZNF713 (ENSCLAG00000007534)	MRPS17 (ENSCLAG00000007650) #31	NIPSNAP2 (ENSCLAG00000008451) #32	PSPH (ENSCLAG00000008790) #33	CCT6A (ENSCLAG00000004434)	ENSCLAG00000005667 #34
Guinea pig	MODERN SPECIES	66	TBRG4 (ENSCPOG00000012294)	ENSCPOG00000020626	CCM2 (ENSCPOG00000009887) #7	MYO1G (ENSCPOG00000027389) #8	PURB (ENSCPOG00000033652) #9	H2AZ2 (ENSCPOG00000036358) #10	ENSCPOG00000002632 #11	ZMIZ2 (ENSCPOG00000002214) #12	OGDH (ENSCPOG00000003361) #13	TMED4 (ENSCPOG00000030032) #14	DDX56 (ENSCPOG00000003359) #15	NUDCD3 (ENSCPOG00000032095) #17	CAMK2B (ENSCPOG00000019961) #18	YKT6 (ENSCPOG00000039668) #19	GCK (ENSCPOG00000005392) #20	POLD2 (ENSCPOG00000020753) #22	AEBP1 (ENSCPOG00000006383) #23	POLM (ENSCPOG00000014785) #24	PGAM2 (ENSCPOG00000006665) #25	DBNL (ENSCPOG00000006660) #26	UBE2D4 (ENSCPOG00000038086)	URGCP (ENSCPOG00000025608) #27	MRPS24 (ENSCPOG00000036749) #28	SEPTIN14 (ENSCPOG00000009996) #30	ENSCPOG00000038154	NIPSNAP2 (ENSCPOG00000004556) #32	PSPH (ENSCPOG00000039209) #33	CCT6A (ENSCPOG00000006992)	SUMF2 (ENSCPOG00000006993)	PHKG1 (ENSCPOG00000000387) #35	CHCHD2 (ENSCPOG00000012413) #36
Naked mole-rat female	MODERN SPECIES		CCM2 (ENSHGLG00000017450) #7	MYO1G (ENSHGLG00000007954) #8	H2AFV (ENSHGLG00000037585) #10	ENSHGLG00000036983	PPIA (ENSHGLG00000040573) ##11	ZMIZ2 (ENSHGLG00000005097) #12	OGDH (ENSHGLG00000008706) #13	TMED4 (ENSHGLG00000019465) #14	DDX56 (ENSHGLG00000017271) #15	NPC1L1 (ENSHGLG00000018856) #16	NUDCD3 (ENSHGLG00000015378) #17	CAMK2B (ENSHGLG00000015797) #18	YKT6 (ENSHGLG00000019116) #19	GCK (ENSHGLG00000019150) #20	MYL7 (ENSHGLG00000018902) #21	POLD2 (ENSHGLG00000014784) #22	POLM (ENSHGLG00000014178) #24	PGAM2 (ENSHGLG00000012441) #25	DBNL (ENSHGLG00000013008) #26	ENSHGLG00000043334	ENSHGLG00000005469 #27	ENSHGLG00000041438 #28	ENSHGLG00000038583	ENSHGLG00000036018	ENSHGLG00000041022 #30	ENSHGLG00000033643	ENSHGLG00000048189	ENSHGLG00000016304	ENSHGLG00000009551	NIPSNAP2 (ENSHGLG00000005574) #32	PSPH (ENSHGLG00000010095) #33
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000158053 #8	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012.s #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925
Marmotini	ANCESTRAL SPECIES	37	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT00950000183087.B ##11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012.s #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153505.a.a.c.a	ENSGT00390000011072	ENSGT00960000189879	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000158053 #8	ENSGT00950000183162.a.b #9	ENSGT00900000140979.a.b.vb #10	ENSGT00950000183087.A.a.b.a #11	ENSGT01030000234539.b.b.a #12	ENSGT00950000183125.b.a.a #13	ENSGT00940000159012.s #14	ENSGT00550000074946 #15	ENSGT00940000159904 #16	ENSGT00860000135606	ENSGT00940000158444 #17	ENSGT00940000158973.b #18	ENSGT00390000015164 #19	ENSGT00950000182787.E.d.e.b #20	ENSGT00940000161682 #21	ENSGT00390000006780 #22	ENSGT00940000158323 #23	ENSGT00940000158490 #24	ENSGT00950000182926.b.c #25	ENSGT00940000156732 #26	ENSGT00940000160915	ENSGT00940000154390.A.j #27	ENSGT00390000011179 #28	ENSGT00940000153505.a.a.c.a	ENSGT00390000011072	ENSGT00960000189879	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722
Arctic ground squirrel	MODERN SPECIES	214	MYO1G (ENSUPAG00010022057) #8	PURB (ENSUPAG00010022054) #9	H2AZ2 (ENSUPAG00010022047) #10	ENSUPAG00010022046	ENSUPAG00010022045 #11	ZMIZ2 (ENSUPAG00010022033) #12	OGDH (ENSUPAG00010021984) #13	TMED4 (ENSUPAG00010021975) #14	DDX56 (ENSUPAG00010021974) #15	NPC1L1 (ENSUPAG00010021963) #16	NUDCD3 (ENSUPAG00010021958) #17	CAMK2B (ENSUPAG00010021102) #18	YKT6 (ENSUPAG00010021076) #19	GCK (ENSUPAG00010021047) #20	MYL7 (ENSUPAG00010021036) #21	POLD2 (ENSUPAG00010021026) #22	AEBP1 (ENSUPAG00010020977) #23	POLM (ENSUPAG00010020954) #24	PGAM2 (ENSUPAG00010020948) #25	DBNL (ENSUPAG00010020898) #26
Squirrel	MODERN SPECIES	78	CCM2 (ENSSTOG00000026702) #7	MYO1G (ENSSTOG00000004101) #8	H2AZ2 (ENSSTOG00000011533) #10	ENSSTOG00000010215 #11	ZMIZ2 (ENSSTOG00000010197) #12	OGDH (ENSSTOG00000000469) #13	TMED4 (ENSSTOG00000014658) #14	DDX56 (ENSSTOG00000000464) #15	NPC1L1 (ENSSTOG00000020879) #16	ENSSTOG00000031145	NUDCD3 (ENSSTOG00000000456) #17	CAMK2B (ENSSTOG00000000450) #18	YKT6 (ENSSTOG00000000448) #19	GCK (ENSSTOG00000002740) #20	MYL7 (ENSSTOG00000002725) #21	POLD2 (ENSSTOG00000002713) #22	AEBP1 (ENSSTOG00000002677) #23	POLM (ENSSTOG00000002662) #24	PGAM2 (ENSSTOG00000008573) #25	DBNL (ENSSTOG00000002644) #26	UBE2D4 (ENSSTOG00000002630)	URGCP (ENSSTOG00000010637) #27	MRPS24 (ENSSTOG00000032907) #28	BLVRA (ENSSTOG00000021499)	STK17A (ENSSTOG00000026139)	HECW1 (ENSSTOG00000016043)	MRPL32 (ENSSTOG00000013340)	PSMA2 (ENSSTOG00000013334)	C7orf25 (ENSSTOG00000027844)	GLI3 (ENSSTOG00000020844)	ENSSTOG00000034121
Alpin marmot	MODERN SPECIES	26	CCM2 (ENSMMMG00000014704) #7	MYO1G (ENSMMMG00000014692) #8	ENSMMMG00000014682	ENSMMMG00000014677	ENSMMMG00000014669 ##11	ZMIZ2 (ENSMMMG00000014533) #12	OGDH (ENSMMMG00000014266) #13	ENSMMMG00000014248 #14	DDX56 (ENSMMMG00000014226) #15	NPC1L1 (ENSMMMG00000014118) #16	NUDCD3 (ENSMMMG00000014107) #17	CAMK2B (ENSMMMG00000012507) #18	YKT6 (ENSMMMG00000012487) #19	GCK (ENSMMMG00000012459) #20	MYL7 (ENSMMMG00000012448) #21	POLD2 (ENSMMMG00000012436) #22	ENSMMMG00000012394 #23	POLM (ENSMMMG00000012375) #24	PGAM2 (ENSMMMG00000012371) #25	DBNL (ENSMMMG00000012313) #26	ENSMMMG00000012291	URGCP (ENSMMMG00000012282) #27	MRPS24 (ENSMMMG00000012279) #28	ENSMMMG00000012270	BLVRA (ENSMMMG00000012252)	ENSMMMG00000012217	STK17A (ENSMMMG00000012208)	ENSMMMG00000012200	HECW1 (ENSMMMG00000012160)	ENSMMMG00000012152	MRPL32 (ENSMMMG00000012145)
Eurasian red squirrel	MODERN SPECIES	17	MYO1G (ENSSVLG00005010085) #8	PURB (ENSSVLG00005010055) #9	ENSSVLG00005009916 #10	ENSSVLG00005009853 #11	ZMIZ2 (ENSSVLG00005009754) #12	ENSSVLG00005009696 ##10	OGDH (ENSSVLG00005009410) #13	ENSSVLG00005009279 #14	DDX56 (ENSSVLG00005009218) #15	NPC1L1 (ENSSVLG00005008888) #16	NUDCD3 (ENSSVLG00005008781) #17	CAMK2B (ENSSVLG00005007607) #18	ENSSVLG00005007143 #19	GCK (ENSSVLG00005006971) #20	MYL7 (ENSSVLG00005006900) #21	POLD2 (ENSSVLG00005006846) #22	AEBP1 (ENSSVLG00005006770) #23	POLM (ENSSVLG00005006728) #24	PGAM2 (ENSSVLG00005006699) #25	DBNL (ENSSVLG00005006493) #26	UBE2D4 (ENSSVLG00005006358)	ENSSVLG00005006336	URGCP (ENSSVLG00005006226) #27	MRPS24 (ENSSVLG00005006180) #28	ENSSVLG00005006086	BLVRA (ENSSVLG00005006049)	COA1 (ENSSVLG00005006028)	STK17A (ENSSVLG00005005990)	HECW1 (ENSSVLG00005005468)	ENSSVLG00005005320	MRPL32 (ENSSVLG00005005303)