Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742 #8	ENSGT00940000156437 #10	ENSGT00390000003364 #11	ENSGT00940000158577 #13	ENSGT00940000159488 #14	ENSGT01030000234519.e.a.a.a.a.a #15	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000161347	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00390000001325 #37	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374.u	ENSGT00940000157487	ENSGT00390000008742 #8	ENSGT00940000156437 #10	ENSGT00390000003364 #11	ENSGT00940000158577 #13	ENSGT00940000159488 #14	ENSGT01030000234519.e.a.a.a.a.a #15	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000162569.b #21	ENSGT00940000161347	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00390000001325 #37	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609	ENSGT01050000244942.b.a.a
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005025192 #7	GKAP1 (ENSSVLG00005025203) #8	ENSSVLG00005025241 #9	UBQLN1 (ENSSVLG00005025254) #10	IDNK (ENSSVLG00005025283) #11	ENSSVLG00005025340 #12	FRMD3 (ENSSVLG00005025365) #13	RASEF (ENSSVLG00005025415) #14	TLE1 (ENSSVLG00005025442) #15	ENSSVLG00005025469 #16	TLE4 (ENSSVLG00005025580) #17	ENSSVLG00005025732 #18	PSAT1 (ENSSVLG00005025737) #19	ENSSVLG00005025778 #20	ENSSVLG00005025826 #21	GNA14 (ENSSVLG00005025833) #22	VPS13A (ENSSVLG00005025879) #23	ENSSVLG00005025921 #24	FOXB2 (ENSSVLG00005014521) #25	PRUNE2 (ENSSVLG00005014607) #26	ENSSVLG00005014936 #27	ENSSVLG00005015000 #28	GCNT1 (ENSSVLG00005015046) #29	ENSSVLG00005015067 #30	PCSK5 (ENSSVLG00005015142) #31	ENSSVLG00005015236 #32	ENSSVLG00005015253 #33	OSTF1 (ENSSVLG00005015295) #34	NMRK1 (ENSSVLG00005015348) #35	CARNMT1 (ENSSVLG00005015445) #36	C9orf40 (ENSSVLG00005015497) #37
Marmotini	ANCESTRAL SPECIES	1										ENSGT00940000159488 #14	ENSGT01030000234519.e.a.a.a.a.a #15	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000161347	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00390000001325 #37	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609	ENSGT01050000244942.b.a.a
Marmotini_b	ANCESTRAL SPECIES	88										ENSGT01030000234519.e.a.a.a.a.a #15	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000162569.b #21	ENSGT00940000161347	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00390000001325 #37	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609	ENSGT01050000244942.b.a.a
Squirrel	MODERN SPECIES	103															GNAQ (ENSSTOG00000024755)	GNA14 (ENSSTOG00000008680) #22	VPS13A (ENSSTOG00000008587) #23	ENSSTOG00000033146 #25	ENSSTOG00000026412	PRUNE2 (ENSSTOG00000023589) #26	GCNT1 (ENSSTOG00000012068) #29	ENSSTOG00000027323	RFK (ENSSTOG00000012064) #30	ENSSTOG00000020987	PCSK5 (ENSSTOG00000012040) #31	OSTF1 (ENSSTOG00000023378) #34	NMRK1 (ENSSTOG00000000389) #35	CARNMT1 (ENSSTOG00000000385) #36	TRPM6 (ENSSTOG00000013271)	RORB (ENSSTOG00000013264)	ANXA1 (ENSSTOG00000023530)
Arctic ground squirrel	MODERN SPECIES	131												TLE4 (ENSUPAG00010021868) #17	PSAT1 (ENSUPAG00010021862) #19	CEP78 (ENSUPAG00010021857) #20	ENSUPAG00010021855 #21	GNA14 (ENSUPAG00010021852) #22	VPS13A (ENSUPAG00010021846) #23	FOXB2 (ENSUPAG00010021845) #25	ENSUPAG00010021844	PRUNE2 (ENSUPAG00010021836) #26	GCNT1 (ENSUPAG00010021834) #29	ENSUPAG00010021831	RFK (ENSUPAG00010021827) #30	ENSUPAG00010021821 #31
Alpin marmot	MODERN SPECIES	32									RASEF (ENSMMMG00000018363) #14	TLE1 (ENSMMMG00000012607) #15	ENSMMMG00000012571	TLE4 (ENSMMMG00000012524) #17	PSAT1 (ENSMMMG00000012517) #19	CEP78 (ENSMMMG00000012498) #20	GNAQ (ENSMMMG00000012272)	GNA14 (ENSMMMG00000012248) #22	VPS13A (ENSMMMG00000012153) #23	ENSMMMG00000012137 #25	ENSMMMG00000012128	PRUNE2 (ENSMMMG00000012039) #26	GCNT1 (ENSMMMG00000012027) #29	RFK (ENSMMMG00000012015) #30	ENSMMMG00000011961 #31	ENSMMMG00000011953	ENSMMMG00000011944	OSTF1 (ENSMMMG00000011932) #34	NMRK1 (ENSMMMG00000011918) #35	ENSMMMG00000011915	ENSMMMG00000011905 #37	TRPM6 (ENSMMMG00000011876)	RORB (ENSMMMG00000011844)
Hystricomorpha	ANCESTRAL SPECIES	46		ENSGT00940000154461.`c	ENSGT00940000154294.k.a	ENSGT01030000234669.A	ENSGT01090000260018.D.d.a	ENSGT01090000260018.A.a.b	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159488 #14	ENSGT01030000234519.e.a.a.a.a.a #15	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000161347	ENSGT00940000162569.b #21	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609	ENSGT01050000244942.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00940000154461.`c	ENSGT00940000154294.k.a	ENSGT00940000154294.k.b	ENSGT00940000154294.l	ENSGT01030000234669.A	ENSGT01090000260018.A.a.b	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159488 #14	ENSGT01030000234519.e.a.a.a.a.a #15	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000161347	ENSGT00940000162569.b #21	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609	ENSGT01050000244942.b.a.a
Guinea pig	MODERN SPECIES	21				RACK1 (ENSCPOG00000008724)	TRIM41 (ENSCPOG00000022446)	TRIM7 (ENSCPOG00000034919)	ZFP62 (ENSCPOG00000037011)	MGAT1 (ENSCPOG00000032870)	RASEF (ENSCPOG00000005004) #14	TLE1 (ENSCPOG00000013582) #15	TLE4 (ENSCPOG00000010034) #17	PSAT1 (ENSCPOG00000030281) #19	CEP78 (ENSCPOG00000009445) #20	GNAQ (ENSCPOG00000034812)	ENSCPOG00000019876	GNA14 (ENSCPOG00000005387) #22	VPS13A (ENSCPOG00000006841) #23	PRUNE2 (ENSCPOG00000040525) #26	GCNT1 (ENSCPOG00000013671) #29	RFK (ENSCPOG00000038626) #30	PCSK5 (ENSCPOG00000002680) #31	OSTF1 (ENSCPOG00000007226) #34	NMRK1 (ENSCPOG00000039820) #35	CARNMT1 (ENSCPOG00000034337) #36	TRPM6 (ENSCPOG00000011221)	RORB (ENSCPOG00000010612)	ANXA1 (ENSCPOG00000014597)	ENSCPOG00000037891	ENSCPOG00000027235	ENSCPOG00000039887	TMC1 (ENSCPOG00000002837)
Hystricomorpha_b	ANCESTRAL SPECIES	114											ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #19	ENSGT00390000013287 #20	ENSGT00940000161347	ENSGT00940000162569.b #21	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #25	ENSGT00940000154422 #26	ENSGT00940000161348 #29	ENSGT00390000015537 #30	ENSGT00940000155770 #31	ENSGT00920000149159 #34	ENSGT00940000159384 #35	ENSGT00390000005323 #36	ENSGT00940000158164	ENSGT00940000157708	ENSGT00940000155221	ENSGT00940000154609
Long-tailed chinchilla	MODERN SPECIES	219											PSAT1 (ENSCLAG00000004235) #19	CEP78 (ENSCLAG00000002278) #20	ENSCLAG00000001201	ENSCLAG00000001211	ENSCLAG00000001286 #21	GNA14 (ENSCLAG00000001333) #22	VPS13A (ENSCLAG00000001458) #23	FOXB2 (ENSCLAG00000002151) #25	ENSCLAG00000002177 #26	ENSCLAG00000002261 #26	GCNT1 (ENSCLAG00000002318) #29	RFK (ENSCLAG00000001176) #30	PCSK5 (ENSCLAG00000001262) #31	OSTF1 (ENSCLAG00000001314) #34	NMRK1 (ENSCLAG00000001323) #35	ENSCLAG00000001350 #36	TRPM6 (ENSCLAG00000001382)	RORB (ENSCLAG00000001463)	ENSCLAG00000001590	ENSCLAG00000001755	ENSCLAG00000001772
Degu	MODERN SPECIES	136		TLE1 (ENSODEG00000003417) #15	ENSODEG00000018969	ENSODEG00000018925	ENSODEG00000003548	ENSODEG00000003198	TLE4 (ENSODEG00000003247) #17	ENSODEG00000018932	ENSODEG00000003341	ENSODEG00000018927	ENSODEG00000003369 #19	ENSODEG00000003423	CEP78 (ENSODEG00000003443) #20	GNAQ (ENSODEG00000003488)	ENSODEG00000003499	GNA14 (ENSODEG00000003528) #22	ENSODEG00000003546	VPS13A (ENSODEG00000003608) #23	FOXB2 (ENSODEG00000018997) #25	ENSODEG00000019009	ENSODEG00000018936	ENSODEG00000003738 #26	ENSODEG00000003761 #26	GCNT1 (ENSODEG00000018998) #29	RFK (ENSODEG00000003081) #30	ENSODEG00000003128 #31	ENSODEG00000003169	OSTF1 (ENSODEG00000003195) #34	NMRK1 (ENSODEG00000003218) #35	CARNMT1 (ENSODEG00000003242) #36	TRPM6 (ENSODEG00000003284)
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000048766	ENSHGLG00000047277	ENSHGLG00000048302	ENSHGLG00000000915	ENSHGLG00000001072 #15	ENSHGLG00000019837	TLE4 (ENSHGLG00000002102) #17	ENSHGLG00000044467	ENSHGLG00000000755 #19	ENSHGLG00000002547 #20	ENSHGLG00000038481	ENSHGLG00000007997	ENSHGLG00000002513	ENSHGLG00000036185	ENSHGLG00000002009 #21	ENSHGLG00000001656 #22	VPS13A (ENSHGLG00000000572) #23	FOXB2 (ENSHGLG00000001812) #25	ENSHGLG00000036846 #26	ENSHGLG00000040487 #26	GCNT1 (ENSHGLG00000000522) #29	ENSHGLG00000000486 #30	ENSHGLG00000000259 #31	ENSHGLG00000050620	ENSHGLG00000042174	ENSHGLG00000049071 #34	ENSHGLG00000044788 #35	ENSHGLG00000002210	CARNMT1 (ENSHGLG00000000378) #36	ENSHGLG00000033948	ENSHGLG00000050025