Hystricomorpha	ANCESTRAL SPECIES	46		ENSGT00940000154461.`c #10	ENSGT00940000154294.k.a #11	ENSGT01030000234669.A #12	ENSGT01090000260018.D.d.a	ENSGT01090000260018.A.a.b	ENSGT00940000162750 #13	ENSGT00530000063632.B #14	ENSGT00940000159488 #15	ENSGT01030000234519.e.a.a.a.a.a #16	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #18	ENSGT00390000013287 #19	ENSGT00940000161347 #20	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970	ENSGT00940000154422 #24	ENSGT00940000161348 #25	ENSGT00390000015537 #26	ENSGT00940000155770 #27	ENSGT00920000149159 #28	ENSGT00940000159384 #29	ENSGT00390000005323 #30	ENSGT00940000158164 #31	ENSGT00940000157708 #32	ENSGT00940000155221 #33	ENSGT00940000154609 #34	ENSGT01050000244942.b.a.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00940000154461.`c #10	ENSGT00940000154294.k.a #11	ENSGT00940000154294.k.b ##11	ENSGT00940000154294.l ##11	ENSGT01030000234669.A #12	ENSGT01090000260018.A.a.b	ENSGT00940000162750 #13	ENSGT00530000063632.B #14	ENSGT00940000159488 #15	ENSGT01030000234519.e.a.a.a.a.a #16	ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #18	ENSGT00390000013287 #19	ENSGT00940000161347 #20	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970	ENSGT00940000154422 #24	ENSGT00940000161348 #25	ENSGT00390000015537 #26	ENSGT00940000155770 #27	ENSGT00920000149159 #28	ENSGT00940000159384 #29	ENSGT00390000005323 #30	ENSGT00940000158164 #31	ENSGT00940000157708 #32	ENSGT00940000155221 #33	ENSGT00940000154609 #34	ENSGT01050000244942.b.a.a #37
Guinea pig	MODERN SPECIES	21				RACK1 (ENSCPOG00000008724) #10	TRIM41 (ENSCPOG00000022446) #11	TRIM7 (ENSCPOG00000034919) #12	ZFP62 (ENSCPOG00000037011) #13	MGAT1 (ENSCPOG00000032870) #14	RASEF (ENSCPOG00000005004) #15	TLE1 (ENSCPOG00000013582) #16	TLE4 (ENSCPOG00000010034) #17	PSAT1 (ENSCPOG00000030281) #18	CEP78 (ENSCPOG00000009445) #19	GNAQ (ENSCPOG00000034812) #20	ENSCPOG00000019876 #21	GNA14 (ENSCPOG00000005387) #22	VPS13A (ENSCPOG00000006841) #23	PRUNE2 (ENSCPOG00000040525) #24	GCNT1 (ENSCPOG00000013671) #25	RFK (ENSCPOG00000038626) #26	PCSK5 (ENSCPOG00000002680) #27	OSTF1 (ENSCPOG00000007226) #28	NMRK1 (ENSCPOG00000039820) #29	CARNMT1 (ENSCPOG00000034337) #30	TRPM6 (ENSCPOG00000011221) #31	RORB (ENSCPOG00000010612) #32	ANXA1 (ENSCPOG00000014597) #33	ENSCPOG00000037891 #34	ENSCPOG00000027235 #35	ENSCPOG00000039887 #36	TMC1 (ENSCPOG00000002837) #37
Hystricomorpha_b	ANCESTRAL SPECIES	114											ENSGT01030000234519.e.a.a.a.a.b #17	ENSGT00940000153241.A #18	ENSGT00390000013287 #19	ENSGT00940000161347 #20	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970	ENSGT00940000154422 #24	ENSGT00940000161348 #25	ENSGT00390000015537 #26	ENSGT00940000155770 #27	ENSGT00920000149159 #28	ENSGT00940000159384 #29	ENSGT00390000005323 #30	ENSGT00940000158164 #31	ENSGT00940000157708 #32	ENSGT00940000155221 #33	ENSGT00940000154609 #34
Long-tailed chinchilla	MODERN SPECIES	219											PSAT1 (ENSCLAG00000004235) #18	CEP78 (ENSCLAG00000002278) #19	ENSCLAG00000001201	ENSCLAG00000001211	ENSCLAG00000001286	GNA14 (ENSCLAG00000001333) #22	VPS13A (ENSCLAG00000001458) #23	FOXB2 (ENSCLAG00000002151)	ENSCLAG00000002177 #24	ENSCLAG00000002261 #24	GCNT1 (ENSCLAG00000002318) #25	RFK (ENSCLAG00000001176) #26	PCSK5 (ENSCLAG00000001262) #27	OSTF1 (ENSCLAG00000001314) #28	NMRK1 (ENSCLAG00000001323) #29	ENSCLAG00000001350 #30	TRPM6 (ENSCLAG00000001382) #31	RORB (ENSCLAG00000001463) #32	ENSCLAG00000001590 #33	ENSCLAG00000001755 #34	ENSCLAG00000001772 #34
Degu	MODERN SPECIES	136		TLE1 (ENSODEG00000003417) #16	ENSODEG00000018969	ENSODEG00000018925	ENSODEG00000003548	ENSODEG00000003198	TLE4 (ENSODEG00000003247) #17	ENSODEG00000018932	ENSODEG00000003341	ENSODEG00000018927	ENSODEG00000003369 #18	ENSODEG00000003423	CEP78 (ENSODEG00000003443) #19	GNAQ (ENSODEG00000003488) #20	ENSODEG00000003499	GNA14 (ENSODEG00000003528) #22	ENSODEG00000003546	VPS13A (ENSODEG00000003608) #23	FOXB2 (ENSODEG00000018997)	ENSODEG00000019009	ENSODEG00000018936	ENSODEG00000003738 #24	ENSODEG00000003761 #24	GCNT1 (ENSODEG00000018998) #25	RFK (ENSODEG00000003081) #26	ENSODEG00000003128 #27	ENSODEG00000003169	OSTF1 (ENSODEG00000003195) #28	NMRK1 (ENSODEG00000003218) #29	CARNMT1 (ENSODEG00000003242) #30	TRPM6 (ENSODEG00000003284) #31
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000048766	ENSHGLG00000047277	ENSHGLG00000048302	ENSHGLG00000000915	ENSHGLG00000001072 #16	ENSHGLG00000019837	TLE4 (ENSHGLG00000002102) #17	ENSHGLG00000044467	ENSHGLG00000000755 #18	ENSHGLG00000002547 #19	ENSHGLG00000038481	ENSHGLG00000007997	ENSHGLG00000002513	ENSHGLG00000036185	ENSHGLG00000002009	ENSHGLG00000001656 #22	VPS13A (ENSHGLG00000000572) #23	FOXB2 (ENSHGLG00000001812)	ENSHGLG00000036846 #24	ENSHGLG00000040487 #24	GCNT1 (ENSHGLG00000000522) #25	ENSHGLG00000000486 #26	ENSHGLG00000000259 #27	ENSHGLG00000050620	ENSHGLG00000042174	ENSHGLG00000049071 #28	ENSHGLG00000044788 #29	ENSHGLG00000002210	CARNMT1 (ENSHGLG00000000378) #30	ENSHGLG00000033948	ENSHGLG00000050025