Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00500000044957 #7	ENSGT00390000003403	ENSGT00940000154660.a #8	ENSGT00950000182916.a.a #9	ENSGT00940000154201.a.a.b.d #10	ENSGT00500000044945.a #11	ENSGT01050000244887.B #12	ENSGT00940000161736 #13	ENSGT00940000161033 #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #17	ENSGT01030000234519.e.a.a.b.a.a.a ##16	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000160775 #30	ENSGT00940000162148	ENSGT00940000158364 #31	ENSGT00940000159842 #32	ENSGT00390000014000.i #33	ENSGT00940000159993 #34	ENSGT00940000158753 #35	ENSGT00510000047872 #36
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957 #7	ENSGT00940000154660.a #8	ENSGT00950000182916.a.a #9	ENSGT00940000154201.a.a.b.d #10	ENSGT00500000044945.a #11	ENSGT01050000244887.B #12	ENSGT00940000161736 #13	ENSGT00940000161033 #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #17	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000160775 #30	ENSGT00940000162148	ENSGT00940000158364 #31	ENSGT00940000159842 #32	ENSGT00390000014000.i #33	ENSGT00940000159993 #34	ENSGT00940000158753 #35	ENSGT00510000047872 #36
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957 #7	ENSGT00940000154660.a #8	ENSGT00950000182916.a.a #9	ENSGT00940000154201.a.a.b.d #10	ENSGT00500000044945.a #11	ENSGT01050000244887.B #12	ENSGT00940000161736 #13	ENSGT00940000161033 #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #17	ENSGT00950000182965.b.fb #18	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000160775 #30	ENSGT00940000162148	ENSGT00940000158364 #31	ENSGT00940000159842 #32	ENSGT00390000014000.i #33	ENSGT00940000159993 #34	ENSGT00940000158753 #35	ENSGT00510000047872 #36
Degu	MODERN SPECIES	91	DOHH (ENSODEG00000014181) #7	ENSODEG00000015846 #8	NFIC (ENSODEG00000015267) #9	CELF5 (ENSODEG00000014460) #10	NCLN (ENSODEG00000013853) #11	S1PR4 (ENSODEG00000020319) #12	GNA15 (ENSODEG00000014085) #13	GNA11 (ENSODEG00000015009) #14	ENSODEG00000020164 #15	ENSODEG00000014482 #16	TLE2 (ENSODEG00000014073) #17	ENSODEG00000013786 #18	FZR1 (ENSODEG00000014514) #19	TEKTIP1 (ENSODEG00000013282) #20	MFSD12 (ENSODEG00000014260) #21	HMG20B (ENSODEG00000014653) #22	GIPC3 (ENSODEG00000013296) #23	TBXA2R (ENSODEG00000013384) #24	ENSODEG00000014734 #25	PIP5K1C (ENSODEG00000013830) #26	TJP3 (ENSODEG00000013512) #27	APBA3 (ENSODEG00000013581) #28	MRPL54 (ENSODEG00000013969) #29	MATK (ENSODEG00000014649) #30	ATCAY (ENSODEG00000013730) #31	NMRK2 (ENSODEG00000013977) #32	TIMM13 (ENSODEG00000014422) #33	TMPRSS9 (ENSODEG00000014906) #34	ENSODEG00000014560 #35	ENSODEG00000013590 #36	LINGO3 (ENSODEG00000020375) #37
Long-tailed chinchilla	MODERN SPECIES	202	THOP1 (ENSCLAG00000015063)	DOHH (ENSCLAG00000007817) #7	SMIM24 (ENSCLAG00000007177) #8	NFIC (ENSCLAG00000007526) #9	CELF5 (ENSCLAG00000009940) #10	NCLN (ENSCLAG00000008645) #11	S1PR4 (ENSCLAG00000017878) #12	GNA15 (ENSCLAG00000009774) #13	GNA11 (ENSCLAG00000010957) #14	TLE5 (ENSCLAG00000015307) #16	TLE2 (ENSCLAG00000007966) #17	ENSCLAG00000014106 #18	FZR1 (ENSCLAG00000014081) #19	TEKTIP1 (ENSCLAG00000009360) #20	MFSD12 (ENSCLAG00000008160) #21	HMG20B (ENSCLAG00000012030) #22	GIPC3 (ENSCLAG00000009638) #23	TBXA2R (ENSCLAG00000010610) #24	CACTIN (ENSCLAG00000010714) #25	PIP5K1C (ENSCLAG00000011318) #26	TJP3 (ENSCLAG00000008035) #27	APBA3 (ENSCLAG00000010718) #28	MRPL54 (ENSCLAG00000007908) #29	MATK (ENSCLAG00000008473) #30	ZFR2 (ENSCLAG00000010137)	ATCAY (ENSCLAG00000013570) #31	NMRK2 (ENSCLAG00000008930) #32	ENSCLAG00000009705 #33	TMPRSS9 (ENSCLAG00000007396) #34	SPPL2B (ENSCLAG00000010153) #35	LSM7 (ENSCLAG00000011635) #36
Guinea pig	MODERN SPECIES	288									ENSCPOG00000004974 #13	GNA11 (ENSCPOG00000036119) #14	TLE5 (ENSCPOG00000036640) #16	TLE2 (ENSCPOG00000004144) #17	FZR1 (ENSCPOG00000019570) #19	TEKTIP1 (ENSCPOG00000024460) #20	MFSD12 (ENSCPOG00000009074) #21	HMG20B (ENSCPOG00000010777) #22	GIPC3 (ENSCPOG00000023224) #23	TBXA2R (ENSCPOG00000031050) #24	CACTIN (ENSCPOG00000003880) #25	PIP5K1C (ENSCPOG00000001951) #26
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000034587	ENSHGLG00000002680	ENSHGLG00000040658	ENSHGLG00000010518 #11	S1PR4 (ENSHGLG00000042045) #12	GNA15 (ENSHGLG00000033945) #13	GNA11 (ENSHGLG00000035049) #14	AES (ENSHGLG00000036417) #16	TLE2 (ENSHGLG00000013600) #17	ENSHGLG00000037855 ##16	ENSHGLG00000049208 #18	ENSHGLG00000016167	FZR1 (ENSHGLG00000019224) #19	ENSHGLG00000014588 #21	ENSHGLG00000033274 #20	HMG20B (ENSHGLG00000015242) #22	GIPC3 (ENSHGLG00000016188) #23	TBXA2R (ENSHGLG00000012829) #24	CACTIN (ENSHGLG00000016228) #25	ENSHGLG00000016360 #26	TJP3 (ENSHGLG00000014455) #27	APBA3 (ENSHGLG00000014560) #28	MRPL54 (ENSHGLG00000006157) #29	MATK (ENSHGLG00000006614) #30	ZFR2 (ENSHGLG00000010154)	ATCAY (ENSHGLG00000012464) #31	ENSHGLG00000005723 #32	TIMM13 (ENSHGLG00000042587) #33	TMPRSS9 (ENSHGLG00000006952) #34	SPPL2B (ENSHGLG00000008911) #35	LSM7 (ENSHGLG00000010587) #36