Bovinae	ANCESTRAL SPECIES	2	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #9	ENSGT00940000161033 #10	ENSGT00940000161736 #11	ENSGT01050000244887.B #12	ENSGT00500000044945.a #13	ENSGT00940000154201.a.a.b.d #14	ENSGT00950000182916.a.a #15	ENSGT00950000185935	ENSGT00940000154660.a #17	ENSGT00390000003403	ENSGT00500000044957 #18	ENSGT00960000187413	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT00730000111899	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000163572 #30	ENSGT00940000160775 #31	ENSGT00940000162148 #32	ENSGT00940000158364 #33	ENSGT00940000159842 #34	ENSGT00940000161753 #35	ENSGT00940000154662 #36
Bos	ANCESTRAL SPECIES	3	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #8	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #9	ENSGT00940000161033 #10	ENSGT00940000161736 #11	ENSGT01050000244887.B #12	ENSGT00500000044945.a #13	ENSGT00940000154201.a.a.b.d #14	ENSGT00950000182916.a.a #15	ENSGT00950000185935	ENSGT00940000154660.a #17	ENSGT00500000044957 #18	ENSGT00960000187413	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT00730000111899	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000163572 #30	ENSGT00940000160775 #31	ENSGT00940000162148 #32	ENSGT00940000158364 #33	ENSGT00940000159842 #34	ENSGT00940000161753 #35	ENSGT00940000154662 #36
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000162830.a.b	ENSGT01030000234519.e.a.a.b.a.a.a #7	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #8	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #9	ENSGT00940000161033 #10	ENSGT00940000161736 #11	ENSGT01050000244887.B #12	ENSGT00500000044945.a #13	ENSGT00940000154201.a.a.b.d #14	ENSGT00950000182916.a.a #15	ENSGT00940000154660.a #17	ENSGT00500000044957 #18	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000163572 #30	ENSGT00940000160775 #31	ENSGT00940000162148 #32	ENSGT00940000158364 #33	ENSGT00940000159842 #34	ENSGT00940000161753 #35	ENSGT00940000154662 #36	ENSGT01100000263504.a.b.a.b.a.b.ib #37
Domestic yak	MODERN SPECIES	27	TLE6 (ENSBGRG00000001034) #7	TLE2 (ENSBGRG00000000857) #8	TLE5 (ENSBGRG00000000793) #9	GNA11 (ENSBGRG00000000769) #10	GNA15 (ENSBGRG00000000748) #11	S1PR4 (ENSBGRG00000000735) #12	NCLN (ENSBGRG00000000641) #13	CELF5 (ENSBGRG00000000565) #14	ENSBGRG00000000535 #15	ENSBGRG00000000421 #16	ENSBGRG00000000370 #17	DOHH (ENSBGRG00000021664) #18	FZR1 (ENSBGRG00000021298) #19	TEKTIP1 (ENSBGRG00000021216) #20	MFSD12 (ENSBGRG00000021107) #21	HMG20B (ENSBGRG00000021064) #22	GIPC3 (ENSBGRG00000021004) #23	TBXA2R (ENSBGRG00000020972) #24	CACTIN (ENSBGRG00000020942) #25	PIP5K1C (ENSBGRG00000020521) #26	TJP3 (ENSBGRG00000019950) #27	APBA3 (ENSBGRG00000019857) #28	MRPL54 (ENSBGRG00000019811) #29	RAX2 (ENSBGRG00000019785) #30	MATK (ENSBGRG00000019523) #31	ZFR2 (ENSBGRG00000019327) #32	ATCAY (ENSBGRG00000019249) #33	NMRK2 (ENSBGRG00000019172) #34	DAPK3 (ENSBGRG00000019101) #35	EEF2 (ENSBGRG00000018816) #36	ENSBGRG00000018795 #37
Wild yak	MODERN SPECIES	3193																ENSBMUG00000010976 #22
Bos_b	ANCESTRAL SPECIES	2	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #9	ENSGT00940000161033 #10	ENSGT00940000161736 #11	ENSGT01050000244887.B #12	ENSGT00500000044945.a #13	ENSGT00940000154201.a.a.b.d #14	ENSGT00950000185200	ENSGT00950000182916.a.a #15	ENSGT00950000185935	ENSGT00940000154660.a #17	ENSGT00500000044957 #18	ENSGT00960000187413	ENSGT00950000183104.B.a.a #19	ENSGT00390000004282 #20	ENSGT00390000005318.a #21	ENSGT00940000161213 #22	ENSGT00390000003420.b #23	ENSGT00730000111899	ENSGT01030000234559.a.a.a #24	ENSGT00950000183102.A.a #25	ENSGT00940000159258 #26	ENSGT00940000160036 #27	ENSGT00940000160384 #28	ENSGT00390000001201 #29	ENSGT00940000163572 #30	ENSGT00940000160775 #31	ENSGT00940000162148 #32	ENSGT00940000158364 #33	ENSGT00940000159842 #34	ENSGT00940000161753 #35	ENSGT00940000154662 #36
Hybrid Bos Indicus	MODERN SPECIES	26	TLE6 (ENSBIXG00005002519) #7	TLE2 (ENSBIXG00005015910) #8	TLE5 (ENSBIXG00005015803) #9	GNA11 (ENSBIXG00005002462) #10	GNA15 (ENSBIXG00005002453) #11	S1PR4 (ENSBIXG00005015709) #12	NCLN (ENSBIXG00005002433) #13	NFIC (ENSBIXG00005002308) #15	ENSBIXG00005015296	SMIM24 (ENSBIXG00005015291) #17	DOHH (ENSBIXG00005015281) #18	ENSBIXG00005015258	FZR1 (ENSBIXG00005006231) #19	TEKTIP1 (ENSBIXG00005015154) #20	MFSD12 (ENSBIXG00005015129) #21	HMG20B (ENSBIXG00005015091) #22	GIPC3 (ENSBIXG00005002213) #23	TBXA2R (ENSBIXG00005015046) #24	CACTIN (ENSBIXG00005002202) #25	PIP5K1C (ENSBIXG00005014985) #26	TJP3 (ENSBIXG00005002143) #27	APBA3 (ENSBIXG00005005496) #28	MRPL54 (ENSBIXG00005014674) #29	RAX2 (ENSBIXG00005014658) #30	MATK (ENSBIXG00005014627) #31	ZFR2 (ENSBIXG00005007010) #32	ATCAY (ENSBIXG00005006129) #33	NMRK2 (ENSBIXG00005014431) #34	ENSBIXG00005001922 #36	PIAS4 (ENSBIXG00005014272)	ZBTB7A (ENSBIXG00005007496)
Cow	DUPLICATION
Cow	MODERN SPECIES	26	DBN1 (ENSBTAG00000011400)	PRR7 (ENSBTAG00000011398)	GRK6 (ENSBTAG00000043994)	F12 (ENSBTAG00000018872)	PFN3 (ENSBTAG00000020353)	SLC34A1 (ENSBTAG00000020351)	RGS14 (ENSBTAG00000008497)	LMAN2 (ENSBTAG00000008034)	MXD3 (ENSBTAG00000005010)	PRELID1 (ENSBTAG00000005009)	RAB24 (ENSBTAG00000025425)	NSD1 (ENSBTAG00000025426)	FGFR4 (ENSBTAG00000010543)	ZNF346 (ENSBTAG00000010541)	ENSBTAG00000051478	ENSBTAG00000010020 #22	UIMC1 (ENSBTAG00000001707)	HK3 (ENSBTAG00000014898)	UNC5A (ENSBTAG00000014897)	TSPAN17 (ENSBTAG00000017451)	EIF4E1B (ENSBTAG00000003103)	SNCB (ENSBTAG00000009803)	GPRIN1 (ENSBTAG00000044035)	CDHR2 (ENSBTAG00000025340)	RNF44 (ENSBTAG00000017748)	FAF2 (ENSBTAG00000017744)	CLTB (ENSBTAG00000010740)	HIGD2A (ENSBTAG00000010735)	NOP16 (ENSBTAG00000010734)	ARL10 (ENSBTAG00000025345)	COMMD10 (ENSBTAG00000019071)
Cow	MODERN SPECIES	26	GNA15 (ENSBTAG00000019988) #11	S1PR4 (ENSBTAG00000000381) #12	NCLN (ENSBTAG00000020759) #13	CELF5 (ENSBTAG00000021774) #14	ENSBTAG00000054212	ENSBTAG00000051439 #14	ENSBTAG00000049701	NFIC (ENSBTAG00000008520) #15	ENSBTAG00000054259	SMIM24 (ENSBTAG00000031383) #17	DOHH (ENSBTAG00000005272) #18	ENSBTAG00000051400	FZR1 (ENSBTAG00000031387) #19	TEKTIP1 (ENSBTAG00000014982) #20	MFSD12 (ENSBTAG00000014979) #21	HMG20B (ENSBTAG00000008789) #22	GIPC3 (ENSBTAG00000050809) #23	ENSBTAG00000053812	TBXA2R (ENSBTAG00000014944) #24	CACTIN (ENSBTAG00000010373) #25	PIP5K1C (ENSBTAG00000000710) #26	TJP3 (ENSBTAG00000018342) #27	APBA3 (ENSBTAG00000008395) #28	MRPL54 (ENSBTAG00000008396) #29	RAX2 (ENSBTAG00000009750) #30	MATK (ENSBTAG00000006619) #31	ZFR2 (ENSBTAG00000000755) #32	ATCAY (ENSBTAG00000018375) #33	NMRK2 (ENSBTAG00000031573) #34	DAPK3 (ENSBTAG00000020417) #35	EEF2 (ENSBTAG00000004258) #36
American bison	MODERN SPECIES	3349	TLE2 (ENSBBBG00000023745) #8	TLE5 (ENSBBBG00000023655) #9	GNA11 (ENSBBBG00000006176) #10	GNA15 (ENSBBBG00000006167) #11	S1PR4 (ENSBBBG00000023601) #12	NCLN (ENSBBBG00000023582) #13	ENSBBBG00000008686	NFIC (ENSBBBG00000023432) #15	SMIM24 (ENSBBBG00000023341) #17	SMIM44 (ENSBBBG00000023332)	DOHH (ENSBBBG00000008411) #18	ENSBBBG00000023317	FZR1 (ENSBBBG00000023304) #19	TEKTIP1 (ENSBBBG00000023231) #20	MFSD12 (ENSBBBG00000023220) #21	HMG20B (ENSBBBG00000023190) #22	GIPC3 (ENSBBBG00000000334) #23	TBXA2R (ENSBBBG00000000372) #24	CACTIN (ENSBBBG00000000388) #25	PIP5K1C (ENSBBBG00000000451) #26	TJP3 (ENSBBBG00000023169) #27	APBA3 (ENSBBBG00000006868) #28	MRPL54 (ENSBBBG00000023057) #29	RAX2 (ENSBBBG00000008182) #30	MATK (ENSBBBG00000023026) #31	ENSBBBG00000023003 #32	ATCAY (ENSBBBG00000022991) #33	ENSBBBG00000006028 #34	DAPK3 (ENSBBBG00000022951) #35	EEF2 (ENSBBBG00000022915) #36	ENSBBBG00000022877 #37