Glires	ANCESTRAL SPECIES	4	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000162695	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000162695	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000162695	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000162695	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00950000185175	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000157307 #7	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00390000014000.j #23	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000157307 #7	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00390000014000.j #23	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Long-tailed chinchilla	MODERN SPECIES	120	GRAP2 (ENSCLAG00000016753) #7	ENTHD1 (ENSCLAG00000016698) #8	CACNA1I (ENSCLAG00000016706) #9	RPS19BP1 (ENSCLAG00000016707) #10	ATF4 (ENSCLAG00000017308) #11	MIEF1 (ENSCLAG00000016517) #12	MGAT3 (ENSCLAG00000016469) #13	TAB1 (ENSCLAG00000015972) #14	SYNGR1 (ENSCLAG00000015444) #15	RPL3 (ENSCLAG00000016387) #16	PDGFB (ENSCLAG00000016860) #17	CBX7 (ENSCLAG00000017313) #18	ENSCLAG00000016615 #19	CBX6 (ENSCLAG00000017119) #20	NPTXR (ENSCLAG00000016215) #21	DNAL4 (ENSCLAG00000015601) #22	ENSCLAG00000016664 #23	SUN2 (ENSCLAG00000016978) #24	GTPBP1 (ENSCLAG00000016782) #25	JOSD1 (ENSCLAG00000016585) #26	ENSCLAG00000016480 #27	CBY1 (ENSCLAG00000017105) #28	DMC1 (ENSCLAG00000017343) #29	DDX17 (ENSCLAG00000017294) #30	KDELR3 (ENSCLAG00000017280) #31	KCNJ4 (ENSCLAG00000016724) #32	CSNK1E (ENSCLAG00000016892) #33	TMEM184B (ENSCLAG00000016941) #34	MAFF (ENSCLAG00000016603) #35	PLA2G6 (ENSCLAG00000016964) #36	ENSCLAG00000016427 #37
Degu	MODERN SPECIES	105	ENTHD1 (ENSODEG00000013716) #8	CACNA1I (ENSODEG00000012240) #9	RPS19BP1 (ENSODEG00000012767) #10	ATF4 (ENSODEG00000012791) #11	MIEF1 (ENSODEG00000012181) #12	MGAT3 (ENSODEG00000013842) #13	TAB1 (ENSODEG00000015803) #14	SYNGR1 (ENSODEG00000016219) #15	ENSODEG00000013672 #16	PDGFB (ENSODEG00000012860) #17	CBX7 (ENSODEG00000013496) #18	ENSODEG00000020029	ENSODEG00000012358	ENSODEG00000012367 #20	NPTXR (ENSODEG00000012380) #21	DNAL4 (ENSODEG00000013596) #22	SUN2 (ENSODEG00000012534) #24	ENSODEG00000019931	GTPBP1 (ENSODEG00000012443) #25	ENSODEG00000011619	ENSODEG00000011910 #26	ENSODEG00000012101 #27	CBY1 (ENSODEG00000012784) #28	DMC1 (ENSODEG00000013866) #29	DDX17 (ENSODEG00000013118) #30	KDELR3 (ENSODEG00000013049) #31	KCNJ4 (ENSODEG00000012639) #32	CSNK1E (ENSODEG00000013427) #33	TMEM184B (ENSODEG00000012793) #34	MAFF (ENSODEG00000012952) #35	PLA2G6 (ENSODEG00000012170) #36
Guinea pig	MODERN SPECIES	28	FAM83F (ENSCPOG00000014133)	GRAP2 (ENSCPOG00000040713) #7	ENTHD1 (ENSCPOG00000014129) #8	CACNA1I (ENSCPOG00000011963) #9	RPS19BP1 (ENSCPOG00000037075) #10	ATF4 (ENSCPOG00000022485) #11	MIEF1 (ENSCPOG00000033670) #12	TAB1 (ENSCPOG00000024643) #14	SYNGR1 (ENSCPOG00000035790) #15	RPL3 (ENSCPOG00000010038) #16	PDGFB (ENSCPOG00000005394) #17	CBX7 (ENSCPOG00000037430) #18	ENSCPOG00000009257 #19	CBX6 (ENSCPOG00000035677) #20	NPTXR (ENSCPOG00000025747) #21	DNAL4 (ENSCPOG00000035992) #22	ENSCPOG00000035460 #23	SUN2 (ENSCPOG00000005965) #24	GTPBP1 (ENSCPOG00000007667) #25	JOSD1 (ENSCPOG00000038167) #26	TOMM22 (ENSCPOG00000036347) #27	CBY1 (ENSCPOG00000020801) #28	DMC1 (ENSCPOG00000014221) #29	DDX17 (ENSCPOG00000011790) #30	KDELR3 (ENSCPOG00000025069) #31	KCNJ4 (ENSCPOG00000024834) #32	CSNK1E (ENSCPOG00000005641) #33	TMEM184B (ENSCPOG00000001351) #34	PLA2G6 (ENSCPOG00000027302) #36	BAIAP2L2 (ENSCPOG00000009775) #37	SLC16A8 (ENSCPOG00000024290)
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000162695	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398.h #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000162695	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398.h #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Alpin marmot	MODERN SPECIES	11												ENSMMMG00000013861 #19	ENSMMMG00000013876	ENSMMMG00000013952 #20	NPTXR (ENSMMMG00000013956) #21	DNAL4 (ENSMMMG00000013967) #22	SUN2 (ENSMMMG00000013976) #24	GTPBP1 (ENSMMMG00000014017) #25	JOSD1 (ENSMMMG00000014025) #26	TOMM22 (ENSMMMG00000014030) #27	CBY1 (ENSMMMG00000014042) #28	DMC1 (ENSMMMG00000014064) #29	DDX17 (ENSMMMG00000014113) #30	KDELR3 (ENSMMMG00000014277) #31	KCNJ4 (ENSMMMG00000014283) #32	CSNK1E (ENSMMMG00000014289) #33	TMEM184B (ENSMMMG00000014319) #34	PLA2G6 (ENSMMMG00000014384) #36	BAIAP2L2 (ENSMMMG00000014561) #37	SLC16A8 (ENSMMMG00000014593)	PICK1 (ENSMMMG00000014628)
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00940000154431.e.a.e.a	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398.h #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Squirrel	MODERN SPECIES	92	ENTHD1 (ENSSTOG00000002219) #8	CACNA1I (ENSSTOG00000025056) #9	RPS19BP1 (ENSSTOG00000008459) #10	ATF4 (ENSSTOG00000025355) #11	MIEF1 (ENSSTOG00000028799) #12	MGAT3 (ENSSTOG00000006745) #13	TAB1 (ENSSTOG00000002357) #14	SYNGR1 (ENSSTOG00000023819) #15	ENSSTOG00000025552	RPL3 (ENSSTOG00000014559) #16	PDGFB (ENSSTOG00000022345) #17	CBX7 (ENSSTOG00000013366) #18	ENSSTOG00000007125 #19	CBX6 (ENSSTOG00000022213) #20	NPTXR (ENSSTOG00000032195) #21	DNAL4 (ENSSTOG00000022336) #22	SUN2 (ENSSTOG00000026929) #24	GTPBP1 (ENSSTOG00000010766) #25	JOSD1 (ENSSTOG00000024999) #26	TOMM22 (ENSSTOG00000030828) #27	CBY1 (ENSSTOG00000010750) #28	DMC1 (ENSSTOG00000025006) #29	DDX17 (ENSSTOG00000013699) #30	KDELR3 (ENSSTOG00000002629) #31	KCNJ4 (ENSSTOG00000025708) #32	CSNK1E (ENSSTOG00000005334) #33	TMEM184B (ENSSTOG00000005322) #34	MAFF (ENSSTOG00000025460) #35	PLA2G6 (ENSSTOG00000005291) #36	BAIAP2L2 (ENSSTOG00000025451) #37	SLC16A8 (ENSSTOG00000020426)
Arctic ground squirrel	MODERN SPECIES	496						TAB1 (ENSUPAG00010022276) #14	SYNGR1 (ENSUPAG00010022277) #15	ENSUPAG00010022279	ENSUPAG00010022280 #16	PDGFB (ENSUPAG00010022290) #17	CBX7 (ENSUPAG00010022291) #18	ENSUPAG00010022294 #19	ENSUPAG00010022297 #19	CBX6 (ENSUPAG00010022300) #20	NPTXR (ENSUPAG00010022301) #21	DNAL4 (ENSUPAG00010022304) #22	SUN2 (ENSUPAG00010022310) #24	GTPBP1 (ENSUPAG00010022325) #25	JOSD1 (ENSUPAG00010022326) #26	TOMM22 (ENSUPAG00010022327) #27	CBY1 (ENSUPAG00010022328) #28	ENSUPAG00010022332	DMC1 (ENSUPAG00010022336) #29	DDX17 (ENSUPAG00010022338) #30	KDELR3 (ENSUPAG00010022341) #31	KCNJ4 (ENSUPAG00010022342) #32	CSNK1E (ENSUPAG00010022344) #33	TMEM184B (ENSUPAG00010022345) #34	MAFF (ENSUPAG00010022348) #35	PLA2G6 (ENSUPAG00010022350) #36	BAIAP2L2 (ENSUPAG00010022356) #37
Eurasian red squirrel	MODERN SPECIES	14	CACNA1I (ENSSVLG00005016425) #9	RPS19BP1 (ENSSVLG00005016320) #10	ATF4 (ENSSVLG00005016294) #11	MIEF1 (ENSSVLG00005016249) #12	MGAT3 (ENSSVLG00005016225) #13	TAB1 (ENSSVLG00005016109) #14	SYNGR1 (ENSSVLG00005016019) #15	RPL3 (ENSSVLG00005015871) #16	PDGFB (ENSSVLG00005015796) #17	CBX7 (ENSSVLG00005015711) #18	ENSSVLG00005015660 #18	ENSSVLG00005015640 #18	ENSSVLG00005015177 #19	CBX6 (ENSSVLG00005015114) #20	NPTXR (ENSSVLG00005015045) #21	DNAL4 (ENSSVLG00005014974) #22	SUN2 (ENSSVLG00005014778) #24	GTPBP1 (ENSSVLG00005014719) #25	JOSD1 (ENSSVLG00005014656) #26	ENSSVLG00005014630 ##27	ENSSVLG00005014587 #28	FAM227A (ENSSVLG00005014554)	DMC1 (ENSSVLG00005014240) #29	DDX17 (ENSSVLG00005014127) #30	KDELR3 (ENSSVLG00005014043) #31	KCNJ4 (ENSSVLG00005014012) #32	ENSSVLG00005013745 #33	TMEM184B (ENSSVLG00005013270) #34	MAFF (ENSSVLG00005013238) #35	PLA2G6 (ENSSVLG00005013158) #36	BAIAP2L2 (ENSSVLG00005012886) #37
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Kangaroo rat	MODERN SPECIES	398	Fam83f (ENSDORG00000013192)	Grap2 (ENSDORG00000015414) #7	Enthd1 (ENSDORG00000025046) #8	Cacna1i (ENSDORG00000005080) #9	Rps19bp1 (ENSDORG00000026673) #10	Atf4 (ENSDORG00000004952) #11	Mief1 (ENSDORG00000023252) #12	Tab1 (ENSDORG00000012343) #14	Syngr1 (ENSDORG00000001564) #15	Rpl3 (ENSDORG00000012849) #16	Pdgfb (ENSDORG00000010253) #17	Cbx7 (ENSDORG00000010065) #18	ENSDORG00000027271 #19	ENSDORG00000030017 #21	ENSDORG00000029752 #21	ENSDORG00000029143 #22	Sun2 (ENSDORG00000015797) #24	Gtpbp1 (ENSDORG00000015795) #25	Josd1 (ENSDORG00000025284) #26	Tomm22 (ENSDORG00000015791) #27	Dmc1 (ENSDORG00000015717) #29	Ddx17 (ENSDORG00000003358) #30	Kdelr3 (ENSDORG00000005281) #31	Kcnj4 (ENSDORG00000007221) #32	Csnk1e (ENSDORG00000009978) #33	Tmem184b (ENSDORG00000029807) #34	Maff (ENSDORG00000013449) #35	Pla2g6 (ENSDORG00000002589) #36	ENSDORG00000002587 #37	Slc16a8 (ENSDORG00000002585)	Pick1 (ENSDORG00000002791)
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Lesser Egyptian jerboa	MODERN SPECIES	42	Tnrc6b (ENSJJAG00000015779)	Fam83f (ENSJJAG00000011999)	Grap2 (ENSJJAG00000014224) #7	Cacna1i (ENSJJAG00000018253) #9	Rps19bp1 (ENSJJAG00000013931) #10	ENSJJAG00000015146 #11	Mief1 (ENSJJAG00000015759) #12	Mgat3 (ENSJJAG00000014337) #13	Tab1 (ENSJJAG00000011785) #14	Syngr1 (ENSJJAG00000014672) #15	Rpl3 (ENSJJAG00000015596) #16	Pdgfb (ENSJJAG00000016430) #17	Cbx7 (ENSJJAG00000017220) #18	ENSJJAG00000016840 #19	Nptxr (ENSJJAG00000014759) #21	ENSJJAG00000014301 #22	Sun2 (ENSJJAG00000014510) #24	Gtpbp1 (ENSJJAG00000011437) #25	Josd1 (ENSJJAG00000011112) #26	ENSJJAG00000011941 #27	Cby1 (ENSJJAG00000014095) #28	Fam227a (ENSJJAG00000009801)	Dmc1 (ENSJJAG00000015648) #29	Ddx17 (ENSJJAG00000011350) #30	Kdelr3 (ENSJJAG00000010108) #31	Kcnj4 (ENSJJAG00000008916) #32	Csnk1e (ENSJJAG00000009630) #33	Tmem184b (ENSJJAG00000017531) #34	Maff (ENSJJAG00000017200) #35	Pla2g6 (ENSJJAG00000013671) #36	Baiap2l2 (ENSJJAG00000013471) #37
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1577	Fam83f (ENSNGAG00000020952)	Grap2 (ENSNGAG00000016490) #7	Enthd1 (ENSNGAG00000018535) #8	Cacna1i (ENSNGAG00000007523) #9	Rps19bp1 (ENSNGAG00000017027) #10	Atf4 (ENSNGAG00000007824) #11	ENSNGAG00000013450 #12	Mgat3 (ENSNGAG00000018263) #13	Tab1 (ENSNGAG00000013198) #14	Syngr1 (ENSNGAG00000005324) #15	Rpl3 (ENSNGAG00000011936) #16	Pdgfb (ENSNGAG00000018908) #17	Cbx7 (ENSNGAG00000017652) #18	Apobec3 (ENSNGAG00000018998) #19	Nptxr (ENSNGAG00000021020) #21	ENSNGAG00000006712 #22	Sun2 (ENSNGAG00000012091) #24	Gtpbp1 (ENSNGAG00000010065) #25	Josd1 (ENSNGAG00000015006) #26	Tomm22 (ENSNGAG00000001315) #27	Cby1 (ENSNGAG00000014472) #28	ENSNGAG00000017016	Dmc1 (ENSNGAG00000018320) #29	Ddx17 (ENSNGAG00000004001) #30	Kdelr3 (ENSNGAG00000011665) #31	Kcnj4 (ENSNGAG00000011248) #32	Csnk1e (ENSNGAG00000019350) #33	Tmem184b (ENSNGAG00000012726) #34	Maff (ENSNGAG00000005792) #35	Pla2g6 (ENSNGAG00000009639) #36	Baiap2l2 (ENSNGAG00000018064) #37
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT01030000234887	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000166105	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Rat	DUPLICATION
Rat	MODERN SPECIES	17	Cacna1i (ENSRNOG00000060407) #9	Rps19bp1 (ENSRNOG00000017847) #10	Atf4 (ENSRNOG00000017801) #11	Gm55359 (ENSRNOG00000067422)	Mief1 (ENSRNOG00000017553) #12	Tab1 (ENSRNOG00000017285) #14	Mgat3 (ENSRNOG00000017434) #13	Syngr1 (ENSRNOG00000017108) #15	Rpl3 (ENSRNOG00000016896) #16	Pdgfb (ENSRNOG00000017197) #17	Cbx7 (ENSRNOG00000016875) #18	AC128476.2 (ENSRNOG00000057782)	Apobec3 (ENSRNOG00000016852) #19	Cbx6 (ENSRNOG00000046955) #20	Nptxr (ENSRNOG00000016156) #21	Dnal4 (ENSRNOG00000015583) #22	Sun2 (ENSRNOG00000015177) #24	Gtpbp1 (ENSRNOG00000014634) #25	Josd1 (ENSRNOG00000014440) #26	Tomm22 (ENSRNOG00000014058) #27	Fam227a (ENSRNOG00000021795)	Dmc1 (ENSRNOG00000013807) #29	Ddx17 (ENSRNOG00000051170) #30	Kdelr3 (ENSRNOG00000013577) #31	Kcnj4 (ENSRNOG00000013869) #32	Csnk1e (ENSRNOG00000013076) #33	Tmem184b (ENSRNOG00000022802) #34	Maff (ENSRNOG00000012886) #35	Pla2g6 (ENSRNOG00000012295) #36	Baiap2l2 (ENSRNOG00000012215) #37	Slc16a8 (ENSRNOG00000012090)
Rat	MODERN SPECIES	12	Ank3 (ENSRNOG00000053288)	Dynlt2b-ps1 (ENSRNOG00000000630)	Cdk1 (ENSRNOG00000000632)	Rhobtb1 (ENSRNOG00000000633)	Tmem26 (ENSRNOG00000027859)	Cabcoco1 (ENSRNOG00000000634)	Arid5b (ENSRNOG00000000635)	Rtkn2 (ENSRNOG00000000636)	Rtkn2 (ENSRNOG00000067849)	Zfp365 (ENSRNOG00000000638)	Ado (ENSRNOG00000070733)	Egr2 (ENSRNOG00000000640)	Nrbf2 (ENSRNOG00000000641)	Jmjd1c (ENSRNOG00000000648)	Reep3 (ENSRNOG00000000645)	Dnal4-ps1 (ENSRNOG00000067902) #22	Rpl36al-ps5 (ENSRNOG00000032408)	ENSRNOG00000070329	ENSRNOG00000070306	Ctnna3 (ENSRNOG00000000373)	Lrrtm3 (ENSRNOG00000026466)	ENSRNOG00000069858	LOC108349010 (ENSRNOG00000000376)	ENSRNOG00000066776	Dnajc12 (ENSRNOG00000051960)	Sirt1 (ENSRNOG00000051592)	Herc4 (ENSRNOG00000061040)	Mypn (ENSRNOG00000000383)	Atoh7 (ENSRNOG00000000384)	Pbld1 (ENSRNOG00000000386)	Pbld2 (ENSRNOG00000069854)
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000157307 #7	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000157307 #7	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Northern American deer mouse	MODERN SPECIES	12	Cacna1i (ENSPEMG00000017848) #9	Rps19bp1 (ENSPEMG00000009206) #10	Mief1 (ENSPEMG00000000881) #12	ENSPEMG00000001379	Gm55359 (ENSPEMG00000025628)	Mgat3 (ENSPEMG00000017229) #13	Tab1 (ENSPEMG00000000776) #14	Syngr1 (ENSPEMG00000017114) #15	Rpl3 (ENSPEMG00000012563) #16	Pdgfb (ENSPEMG00000010524) #17	Cbx7 (ENSPEMG00000017298) #18	ENSPEMG00000030420	Apobec3 (ENSPEMG00000000456) #19	Cbx6 (ENSPEMG00000026924) #20	Nptxr (ENSPEMG00000014192) #21	ENSPEMG00000025592 #22	Sun2 (ENSPEMG00000005360) #24	Gtpbp1 (ENSPEMG00000022105) #25	Josd1 (ENSPEMG00000028718) #26	Tomm22 (ENSPEMG00000022564) #27	Cby1 (ENSPEMG00000028273) #28	Fam227a (ENSPEMG00000021220)	Dmc1 (ENSPEMG00000021139) #29	Ddx17 (ENSPEMG00000021115) #30	Kdelr3 (ENSPEMG00000025485) #31	Kcnj4 (ENSPEMG00000020978) #32	Csnk1e (ENSPEMG00000020952) #33	Tmem184b (ENSPEMG00000007707) #34	Maff (ENSPEMG00000029295) #35	Pla2g6 (ENSPEMG00000000395) #36	Baiap2l2 (ENSPEMG00000017444) #37
Prairie vole	MODERN SPECIES	2	Fam83f (ENSMOCG00000003997)	Grap2 (ENSMOCG00000011546) #7	Enthd1 (ENSMOCG00000005157) #8	Cacna1i (ENSMOCG00000015926) #9	Rps19bp1 (ENSMOCG00000015370) #10	Atf4 (ENSMOCG00000016614) #11	Mief1 (ENSMOCG00000011535) #12	Mgat3 (ENSMOCG00000015359) #13	Tab1 (ENSMOCG00000017456) #14	Syngr1 (ENSMOCG00000019576) #15	ENSMOCG00000000700 #16	Pdgfb (ENSMOCG00000002403) #17	Cbx7 (ENSMOCG00000004891) #18	Apobec3 (ENSMOCG00000021576) #19	Nptxr (ENSMOCG00000017145) #21	ENSMOCG00000003313 #22	Sun2 (ENSMOCG00000022083) #24	Gtpbp1 (ENSMOCG00000022043) #25	Josd1 (ENSMOCG00000007178) #26	Tomm22 (ENSMOCG00000001931) #27	Cby1 (ENSMOCG00000015695) #28	Fam227a (ENSMOCG00000007156)	Dmc1 (ENSMOCG00000006879) #29	Ddx17 (ENSMOCG00000010769) #30	Kdelr3 (ENSMOCG00000015416) #31	Kcnj4 (ENSMOCG00000001301) #32	Csnk1e (ENSMOCG00000019912) #33	Tmem184b (ENSMOCG00000022894) #34	Maff (ENSMOCG00000016841) #35	Pla2g6 (ENSMOCG00000016706) #36	Baiap2l2 (ENSMOCG00000022974) #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000157307 #7	ENSGT00940000161730 #8	ENSGT00940000158594 #9	ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00390000008221 #13	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.j #16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000154405.a.a #20	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT01030000235747	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36
Chinese hamster chok1gshd	MODERN SPECIES	1	Grap2 (ENSCGRG00001021712) #7	Enthd1 (ENSCGRG00001021361) #8	Cacna1i (ENSCGRG00001022652) #9	Rps19bp1 (ENSCGRG00001023983) #10	Atf4 (ENSCGRG00001018678) #11	Mief1 (ENSCGRG00001018126) #12	Mgat3 (ENSCGRG00001010541) #13	ENSCGRG00001021963 #14	Syngr1 (ENSCGRG00001021733) #15	Rpl3 (ENSCGRG00001021342) #16	Pdgfb (ENSCGRG00001019045) #17	Cbx7 (ENSCGRG00001018782) #18	Apobec3 (ENSCGRG00001022976) #19	Cbx6 (ENSCGRG00001023499) #20	Nptxr (ENSCGRG00001020831) #21	ENSCGRG00001020627 #22	Sun2 (ENSCGRG00001017050) #24	Gtpbp1 (ENSCGRG00001016791) #25	Josd1 (ENSCGRG00001018907) #26	Tomm22 (ENSCGRG00001018593) #27	Cby1 (ENSCGRG00001022945) #28	Fam227a (ENSCGRG00001011936)	Dmc1 (ENSCGRG00001005679) #29	Ddx17 (ENSCGRG00001023050) #30	Kdelr3 (ENSCGRG00001017350) #31	Kcnj4 (ENSCGRG00001009281) #32	Csnk1e (ENSCGRG00001020326) #33	Tmem184b (ENSCGRG00001019130) #34	Maff (ENSCGRG00001023276) #35	Pla2g6 (ENSCGRG00001016761) #36	Baiap2l2 (ENSCGRG00001016205) #37
Golden Hamster	MODERN SPECIES	626	Fam83f (ENSMAUG00000015744)	Grap2 (ENSMAUG00000008300) #7	Enthd1 (ENSMAUG00000006247) #8	Cacna1i (ENSMAUG00000008968) #9	Rps19bp1 (ENSMAUG00000012429) #10	Atf4 (ENSMAUG00000012102) #11	Mief1 (ENSMAUG00000004657) #12	Mgat3 (ENSMAUG00000001637) #13	ENSMAUG00000021992 #14	Syngr1 (ENSMAUG00000002156) #15	Rpl3 (ENSMAUG00000021888) #16	Pdgfb (ENSMAUG00000010966) #17	Cbx7 (ENSMAUG00000021987) #18	Apobec3 (ENSMAUG00000011683) #19	Nptxr (ENSMAUG00000021222) #21	ENSMAUG00000006203 #22	ENSMAUG00000012155	Josd1 (ENSMAUG00000020861) #26	ENSMAUG00000020296 #27	Cby1 (ENSMAUG00000012412) #28	Dmc1 (ENSMAUG00000021747) #29	Ddx17 (ENSMAUG00000020476) #30	ENSMAUG00000019903	Kdelr3 (ENSMAUG00000007336) #31	Kcnj4 (ENSMAUG00000020839) #32	Csnk1e (ENSMAUG00000003914) #33	Tmem184b (ENSMAUG00000013044) #34	Maff (ENSMAUG00000008846) #35	Pla2g6 (ENSMAUG00000021718) #36	Baiap2l2 (ENSMAUG00000018411) #37	Slc16a8 (ENSMAUG00000020465)
Lagomorpha	ANCESTRAL SPECIES	130					ENSGT00390000016774 #10	ENSGT00530000063801.a #11	ENSGT00390000013127.a #12	ENSGT00510000048276 #14	ENSGT00950000182935.B.b.c #15	ENSGT00390000017606.a.a.i.a.a.b ##16	ENSGT00940000157367 #17	ENSGT00940000158365 #18	ENSGT00940000162772 #19	ENSGT00940000161999	ENSGT00940000154405.a.b #21	ENSGT00940000161265 #22	ENSGT00940000160024 #24	ENSGT00940000156054 #25	ENSGT00390000009228.b #26	ENSGT00390000016475.h #27	ENSGT00940000153137.a.a #28	ENSGT00940000162433	ENSGT00760000119398 #29	ENSGT00940000160049 #30	ENSGT00390000004010.a.b.b #31	ENSGT01030000234586.A.b #32	ENSGT00940000153536.a.a #33	ENSGT00940000153861.b #34	ENSGT00940000161112 #35	ENSGT00940000158756 #36	ENSGT00940000153560.b.b.b #37
Pika	MODERN SPECIES	5233															ENSOPRG00000003511 #21	DNAL4 (ENSOPRG00000003496) #22