Euteleostomi	ANCESTRAL SPECIES	105	ENSGT00950000182991.A.a.c.a.a	ENSGT00940000166479	ENSGT00940000160613	ENSGT00910000148654	ENSGT00940000154468	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Sarcopterygii	ANCESTRAL SPECIES	264											ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Tetrapoda	ANCESTRAL SPECIES	126	ENSGT00940000156477	ENSGT00940000164502	ENSGT00940000154468	ENSGT00390000005315	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Amniota	ANCESTRAL SPECIES	19	ENSGT00390000018626	ENSGT00390000017273.A	ENSGT00390000017273.B	ENSGT00390000004207	ENSGT00530000063759.b #7	ENSGT00940000153541.C #8	ENSGT00940000153725.a.a	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00940000162037 #14	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407
Mammalia	ANCESTRAL SPECIES	15	ENSGT00390000018626	ENSGT00390000017273.A	ENSGT00390000017273.B	ENSGT00390000004207	ENSGT00530000063759.b #7	ENSGT00940000153541.C #8	ENSGT00940000153725.a.a	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00940000162037 #14	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Theria	ANCESTRAL SPECIES	19	ENSGT00390000018626	ENSGT00390000017273.A	ENSGT00390000017273.B	ENSGT00390000004207	ENSGT00530000063759.b #7	ENSGT00940000153541.C #8	ENSGT00940000153725.a.a	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Eutheria	ANCESTRAL SPECIES	11	ENSGT00510000047836 #10	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Glires	ANCESTRAL SPECIES	17	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00390000012268	ENSGT00940000166702	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00730000111454 #11	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000161212 #20	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT01060000253657 #27	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00510000047836 #10	ENSGT00730000111454 #11	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01040000242752 #26	ENSGT01060000253657 #27	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00940000153541.C #8	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01040000242752 #26	ENSGT01060000253657 #27	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Long-tailed chinchilla	MODERN SPECIES	152	SNX21 (ENSCLAG00000007324) #7	TNNC2 (ENSCLAG00000009092) #8	UBE2C (ENSCLAG00000006782) #9	DNTTIP1 (ENSCLAG00000007290) #10	WFDC3 (ENSCLAG00000007998) #11	SPINT4 (ENSCLAG00000009394) #12	WFDC9 (ENSCLAG00000010391) #13	WFDC8 (ENSCLAG00000005649) #14	EPPIN (ENSCLAG00000005761) #15	ENSCLAG00000006593 #16	WFDC2 (ENSCLAG00000008937) #17	ENSCLAG00000011392 #18	PIGT (ENSCLAG00000007833) #19	DBNDD2 (ENSCLAG00000009121) #20	TP53TG5 (ENSCLAG00000004735) #21	SDC4 (ENSCLAG00000005503) #22	RBPJL (ENSCLAG00000005990) #23	MATN4 (ENSCLAG00000005619) #24	SLPI (ENSCLAG00000011573) #25	ENSCLAG00000012295 #26	ENSCLAG00000014366 #27	ENSCLAG00000014442 #28	WFDC5 (ENSCLAG00000008235) #29	KCNS1 (ENSCLAG00000009011) #30	STK4 (ENSCLAG00000010685) #31	TOMM34 (ENSCLAG00000015384) #32	PABPC1L (ENSCLAG00000005298) #33	YWHAB (ENSCLAG00000006020) #34	RIMS4 (ENSCLAG00000006510) #35	KCNK15 (ENSCLAG00000014922) #36	CCN5 (ENSCLAG00000010929) #37
Guinea pig	MODERN SPECIES	45	TNNC2 (ENSCPOG00000026055) #8	UBE2C (ENSCPOG00000014102) #9	DNTTIP1 (ENSCPOG00000012801) #10	WFDC3 (ENSCPOG00000012800) #11	ENSCPOG00000013534	SPINT4 (ENSCPOG00000009982) #12	WFDC13 (ENSCPOG00000006258)	WFDC9 (ENSCPOG00000007400) #13	EPPIN (ENSCPOG00000003114) #15	ENSCPOG00000003112 #16	WFDC2 (ENSCPOG00000031016) #17	PIGT (ENSCPOG00000026325) #19	ENSCPOG00000008537 #21	SYS1 (ENSCPOG00000040477)	DBNDD2 (ENSCPOG00000034820) #20	SDC4 (ENSCPOG00000034683) #22	RBPJL (ENSCPOG00000020407) #23	MATN4 (ENSCPOG00000015472) #24	SLPI (ENSCPOG00000040357) #25	ENSCPOG00000025237 #26	ENSCPOG00000001819 #27	ENSCPOG00000006664 #26	WFDC5 (ENSCPOG00000013648) #29	KCNS1 (ENSCPOG00000033558) #30	STK4 (ENSCPOG00000013641) #31	TOMM34 (ENSCPOG00000030209) #32	PABPC1L (ENSCPOG00000013633) #33	YWHAB (ENSCPOG00000040129) #34	RIMS4 (ENSCPOG00000010692) #35	KCNK15 (ENSCPOG00000020535) #36	CCN5 (ENSCPOG00000034698) #37
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000005726 #11	SPINT4 (ENSHGLG00000006057) #12	WFDC9 (ENSHGLG00000006793) #13	WFDC8 (ENSHGLG00000007455) #14	EPPIN (ENSHGLG00000043093) #15	ENSHGLG00000033998	ENSHGLG00000007778 #16	WFDC2 (ENSHGLG00000008108) #17	ENSHGLG00000048746	ENSHGLG00000037304	ENSHGLG00000009120 #19	ENSHGLG00000046814 #21	DBNDD2 (ENSHGLG00000015151) #20	SYS1 (ENSHGLG00000049939)	ENSHGLG00000039211	SDC4 (ENSHGLG00000035110) #22	RBPJL (ENSHGLG00000018495) #23	MATN4 (ENSHGLG00000008405) #24	ENSHGLG00000009195 #25	ENSHGLG00000048197	ENSHGLG00000037773 #28	ENSHGLG00000045524 #27	ENSHGLG00000050599	ENSHGLG00000004794 #28	WFDC5 (ENSHGLG00000048437) #29	KCNS1 (ENSHGLG00000040822) #30	STK4 (ENSHGLG00000046460) #31	ENSHGLG00000006762	ENSHGLG00000039220	ENSHGLG00000007105 #32	PABPC1L (ENSHGLG00000008434) #33
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000166702	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00390000018558.l #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Marmotini	ANCESTRAL SPECIES	5	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00390000018558.l #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058.a.a #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00940000157562	ENSGT00530000063859.b
Alpin marmot	MODERN SPECIES		ENSMMMG00000005350	ENSMMMG00000005342 #11	WFDC13 (ENSMMMG00000005335)	WFDC11 (ENSMMMG00000005328)	WFDC9 (ENSMMMG00000005318) #13	ENSMMMG00000005311	WFDC8 (ENSMMMG00000005282) #14	EPPIN (ENSMMMG00000005270) #15	ENSMMMG00000005251 #16	WFDC2 (ENSMMMG00000005234) #17	ENSMMMG00000005225	PIGT (ENSMMMG00000005202) #19	DBNDD2 (ENSMMMG00000005187) #20	TP53TG5 (ENSMMMG00000005172) #21	ENSMMMG00000005147	SDC4 (ENSMMMG00000005139) #22	RBPJL (ENSMMMG00000005104) #23	ENSMMMG00000005088 #24	SLPI (ENSMMMG00000005081) #25	ENSMMMG00000005063 #28	WFDC5 (ENSMMMG00000005050) #29	STK4 (ENSMMMG00000005028) #31	ENSMMMG00000005008 #32	PABPC1L (ENSMMMG00000004982) #33	YWHAB (ENSMMMG00000004966) #34	RIMS4 (ENSMMMG00000004946) #35	KCNK15 (ENSMMMG00000004903) #36	CCN5 (ENSMMMG00000004881) #37	PHACTR3 (ENSMMMG00000004853)	ENSMMMG00000004806	PPP1R3D (ENSMMMG00000004802)
Marmotini_b	ANCESTRAL SPECIES	25	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00390000018558.l #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058.b #32	ENSGT00940000161058.a.a #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00940000157562
Arctic ground squirrel	MODERN SPECIES	380	ENSUPAG00010002680	ENSUPAG00010002713 #12	ENSUPAG00010002717	ENSUPAG00010002727	WFDC9 (ENSUPAG00010002742) #13	ENSUPAG00010002754	WFDC8 (ENSUPAG00010002767) #14	EPPIN (ENSUPAG00010002810) #15	ENSUPAG00010002820 #16	WFDC2 (ENSUPAG00010002876) #17	ENSUPAG00010002885	PIGT (ENSUPAG00010002893) #19	DBNDD2 (ENSUPAG00010002913) #20	TP53TG5 (ENSUPAG00010002919) #21	ENSUPAG00010002928	SDC4 (ENSUPAG00010002934) #22	RBPJL (ENSUPAG00010002946) #23	MATN4 (ENSUPAG00010002967) #24	SLPI (ENSUPAG00010003258) #25	ENSUPAG00010003262 #28	WFDC5 (ENSUPAG00010003265) #29	KCNS1 (ENSUPAG00010003273) #30	STK4 (ENSUPAG00010003279) #31	TOMM34 (ENSUPAG00010003301) #32	PABPC1L (ENSUPAG00010003318) #33	YWHAB (ENSUPAG00010003342) #34	RIMS4 (ENSUPAG00010003352) #35	KCNK15 (ENSUPAG00010003360) #36	CCN5 (ENSUPAG00010003368) #37	PHACTR3 (ENSUPAG00010003378)	SYCP2 (ENSUPAG00010003434)
Squirrel	MODERN SPECIES	114	SNX21 (ENSSTOG00000006523) #7	TNNC2 (ENSSTOG00000006513) #8	UBE2C (ENSSTOG00000006502) #9	DNTTIP1 (ENSSTOG00000006482) #10	ENSSTOG00000031894 #11	WFDC11 (ENSSTOG00000015644)	WFDC9 (ENSSTOG00000010219) #13	ENSSTOG00000010208 #14	EPPIN (ENSSTOG00000015851) #15	ENSSTOG00000031891 #16	WFDC2 (ENSSTOG00000020720) #17	PIGT (ENSSTOG00000009327) #19	DBNDD2 (ENSSTOG00000022365) #20	TP53TG5 (ENSSTOG00000009319) #21	SYS1 (ENSSTOG00000009315)	SDC4 (ENSSTOG00000009310) #22	RBPJL (ENSSTOG00000009296) #23	MATN4 (ENSSTOG00000009281) #24	SLPI (ENSSTOG00000020296) #25	ENSSTOG00000031994	ENSSTOG00000023892 #28	WFDC5 (ENSSTOG00000030004) #29	KCNS1 (ENSSTOG00000009257) #30	STK4 (ENSSTOG00000009251) #31	ENSSTOG00000031644	TOMM34 (ENSSTOG00000019477) #32	PABPC1L (ENSSTOG00000003739) #33	YWHAB (ENSSTOG00000003733) #34	RIMS4 (ENSSTOG00000022472) #35	KCNK15 (ENSSTOG00000030351) #36	CCN5 (ENSSTOG00000025361) #37
Eurasian red squirrel	MODERN SPECIES	11	WFDC13 (ENSSVLG00005001659)	ENSSVLG00005001641	WFDC11 (ENSSVLG00005001621)	ENSSVLG00005001609	WFDC9 (ENSSVLG00005001595) #13	ENSSVLG00005001583	ENSSVLG00005001559 #14	EPPIN (ENSSVLG00005001541) #15	ENSSVLG00005001494 #16	WFDC2 (ENSSVLG00005001464) #17	ENSSVLG00005001444	PIGT (ENSSVLG00005001374) #19	ENSSVLG00005001244 #20	TP53TG5 (ENSSVLG00005001221) #21	SYS1 (ENSSVLG00005001200)	SDC4 (ENSSVLG00005001186) #22	RBPJL (ENSSVLG00005001140) #23	MATN4 (ENSSVLG00005001050) #24	SLPI (ENSSVLG00005000965) #25	ENSSVLG00005000948 #28	WFDC5 (ENSSVLG00005000929) #29	KCNS1 (ENSSVLG00005000907) #30	STK4 (ENSSVLG00005000873) #31	TOMM34 (ENSSVLG00005000832) #32	PABPC1L (ENSSVLG00005000760) #33	YWHAB (ENSSVLG00005000717) #34	RIMS4 (ENSSVLG00005000677) #35	KCNK15 (ENSSVLG00005000558) #36	CCN5 (ENSSVLG00005000537) #37	ADA (ENSSVLG00005000518)	PKIG (ENSSVLG00005000482)
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Muroidea	ANCESTRAL SPECIES	7	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00950000184089	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000114163	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000114163	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000156753.d.f #16	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00940000168232	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000114163	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Golden Hamster	MODERN SPECIES	797	Spata25 (ENSMAUG00000018905)	Zswim1 (ENSMAUG00000021241)	Zswim3 (ENSMAUG00000021285)	Acot8 (ENSMAUG00000012840)	Snx21 (ENSMAUG00000015265) #7	Tnnc2 (ENSMAUG00000010140) #8	ENSMAUG00000011887 #11	ENSMAUG00000022067	Wfdc13 (ENSMAUG00000019400)	ENSMAUG00000009436 #14	Eppin (ENSMAUG00000012002) #15	Spint3 (ENSMAUG00000021624)	ENSMAUG00000013078	Pigt (ENSMAUG00000008828) #19	Trp53tg5 (ENSMAUG00000014043) #21	Sdc4 (ENSMAUG00000019602) #22	Matn4 (ENSMAUG00000012107) #24	ENSMAUG00000005289	Wfdc15a (ENSMAUG00000015238) #28	Kcns1 (ENSMAUG00000000788) #30	Stk4 (ENSMAUG00000019085) #31	Tomm34 (ENSMAUG00000008732) #32	ENSMAUG00000005618 #34	Rims4 (ENSMAUG00000020418) #35	Kcnk15 (ENSMAUG00000018101) #36	Ada (ENSMAUG00000001141)	Serinc3 (ENSMAUG00000016690)	Ttpal (ENSMAUG00000002047)	Hnf4a (ENSMAUG00000007993)	Oser1 (ENSMAUG00000010946)	Jph2 (ENSMAUG00000014222)
Chinese hamster chok1gshd	MODERN SPECIES	195	Wfdc13 (ENSCGRG00001009769)	Wfdc11 (ENSCGRG00001009287)	ENSCGRG00001008538	Wfdc9 (ENSCGRG00001007538) #13	ENSCGRG00001006135	Wfdc6b (ENSCGRG00001004631) #16	ENSCGRG00001003588 #14	Eppin (ENSCGRG00001013275) #15	Wfdc6a (ENSCGRG00001012194) #16	Spint3 (ENSCGRG00001011702)	ENSCGRG00001011067	Pigt (ENSCGRG00001009371) #19	Dbndd2 (ENSCGRG00001005798) #20	Trp53tg5 (ENSCGRG00001004068) #21	Sys1 (ENSCGRG00001002260)	Sdc4 (ENSCGRG00001000552) #22	Rbpjl (ENSCGRG00001020891) #23	Matn4 (ENSCGRG00001018392) #24	ENSCGRG00001015495	Slpi (ENSCGRG00001016280) #25	ENSCGRG00001015720	Svs6 (ENSCGRG00001015270)	ENSCGRG00001015371	ENSCGRG00001014934	ENSCGRG00001014445	Wfdc15b (ENSCGRG00001013744) #28	Wfdc15a (ENSCGRG00001013326) #28	Wfdc12 (ENSCGRG00001008335)	Wfdc5 (ENSCGRG00001007787) #29	Kcns1 (ENSCGRG00001006841) #30	Stk4 (ENSCGRG00001003628) #31
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00730000111454 #11	ENSGT00440000034744	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01050000248040	ENSGT00940000162560.a	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35
Northern American deer mouse	MODERN SPECIES	17	Wfdc13 (ENSPEMG00000020558)	Wfdc11 (ENSPEMG00000020966)	Wfdc10 (ENSPEMG00000021259)	Wfdc9 (ENSPEMG00000008120) #13	ENSPEMG00000025571	ENSPEMG00000000022 #12	ENSPEMG00000012227 #14	Eppin (ENSPEMG00000022830) #15	Wfdc6a (ENSPEMG00000023671) #16	Spint3 (ENSPEMG00000007950)	Wfdc2 (ENSPEMG00000016629) #17	Pigt (ENSPEMG00000020782) #19	Dbndd2 (ENSPEMG00000030878) #20	Trp53tg5 (ENSPEMG00000003582) #21	Sys1 (ENSPEMG00000028165)	Sdc4 (ENSPEMG00000011528) #22	Rbpjl (ENSPEMG00000023591) #23	Matn4 (ENSPEMG00000020904) #24	Slpi (ENSPEMG00000020335) #25	ENSPEMG00000000222	ENSPEMG00000030891	Wfdc15b (ENSPEMG00000020446) #28	Wfdc15a (ENSPEMG00000022089) #28	ENSPEMG00000027524	Wfdc5 (ENSPEMG00000022197) #29	Kcns1 (ENSPEMG00000023781) #30	Stk4 (ENSPEMG00000017992) #31	Tomm34 (ENSPEMG00000021489) #32	Pabpc1l (ENSPEMG00000020671) #33	Ywhab (ENSPEMG00000020653) #34	Rims4 (ENSPEMG00000021338) #35
Prairie vole	MODERN SPECIES	357	Wfdc3 (ENSMOCG00000000320) #11	ENSMOCG00000016284	Wfdc13 (ENSMOCG00000000255)	Wfdc11 (ENSMOCG00000005524)	ENSMOCG00000004820	Wfdc9 (ENSMOCG00000013007) #13	ENSMOCG00000019436 #14	Eppin (ENSMOCG00000021754) #15	Wfdc6a (ENSMOCG00000021952) #16	Spint3 (ENSMOCG00000011636)	ENSMOCG00000012979	Pigt (ENSMOCG00000007821) #19	Dbndd2 (ENSMOCG00000013116) #20	Trp53tg5 (ENSMOCG00000019934) #21	Sys1 (ENSMOCG00000020198)	Sdc4 (ENSMOCG00000021996) #22	Rbpjl (ENSMOCG00000005171) #23	Matn4 (ENSMOCG00000017368) #24	Slpi (ENSMOCG00000001280) #25	ENSMOCG00000022818	ENSMOCG00000000930	ENSMOCG00000006384	Wfdc15b (ENSMOCG00000008284) #28	Wfdc15a (ENSMOCG00000012402) #28	Wfdc12 (ENSMOCG00000014911)	Wfdc5 (ENSMOCG00000015790) #29	Kcns1 (ENSMOCG00000002049) #30	Stk4 (ENSMOCG00000001102) #31	Tomm34 (ENSMOCG00000011729) #32	Pabpc1l (ENSMOCG00000013186) #33	Ywhab (ENSMOCG00000016663) #34
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000156753.d.f #16	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000113952	ENSGT00730000114163	ENSGT00520000057703	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32
Mus	ANCESTRAL SPECIES	1	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000156753.d.f #16	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a.k.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000113952	ENSGT00730000114163	ENSGT00520000057703	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32
Mus_A	ANCESTRAL SPECIES		ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000156753.d.f #16	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a.k.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000113952	ENSGT00730000114163	ENSGT00520000057703	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000156753.d.f #16	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a.k.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000113952	ENSGT00730000114163	ENSGT00520000057703	ENSGT00940000162560.a	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32
Mouse	MODERN SPECIES	11	Wfdc13 (ENSMUSG00000067704)	Wfdc11 (ENSMUSG00000078940)	Wfdc10 (ENSMUSG00000070529)	Wfdc9 (ENSMUSG00000074594) #13	Wfdc16 (ENSMUSG00000070530)	Wfdc6b (ENSMUSG00000070531) #16	Wfdc8 (ENSMUSG00000070533) #14	Eppin (ENSMUSG00000017733) #15	Wfdc6a (ENSMUSG00000074595) #16	Spint3 (ENSMUSG00000074596)	Wfdc2 (ENSMUSG00000017723) #17	Pigt (ENSMUSG00000017721) #19	Dbndd2 (ENSMUSG00000017734) #20	Trp53tg5 (ENSMUSG00000017720) #21	Sys1 (ENSMUSG00000045503)	Sdc4 (ENSMUSG00000017009) #22	Rbpjl (ENSMUSG00000017007) #23	Matn4 (ENSMUSG00000016995) #24	Slpi (ENSMUSG00000017002) #25	Svs5 (ENSMUSG00000017004)	Svs6 (ENSMUSG00000017000)	Svs3a (ENSMUSG00000017003)	Svs4 (ENSMUSG00000016998)	Svs3b (ENSMUSG00000050383)	Semg1 (ENSMUSG00000040132)	Wfdc15b (ENSMUSG00000018211) #28	Wfdc15a (ENSMUSG00000051769) #28	Wfdc12 (ENSMUSG00000042845)	Wfdc5 (ENSMUSG00000040154) #29	Kcns1 (ENSMUSG00000040164) #30	Stk4 (ENSMUSG00000018209) #31
Mus_C	ANCESTRAL SPECIES		ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000156753.d.f #16	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d.e #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a.k.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000113952	ENSGT00730000114163	ENSGT00940000162560.a	ENSGT00520000057703	ENSGT00940000162560.b	ENSGT00390000002529.c #28	ENSGT00390000002529.d #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32
Steppe mouse	MODERN SPECIES	3250	Wfdc13 (ENSMSIG00000022285)	Wfdc11 (ENSMSIG00000022270)	ENSMSIG00000022262	Wfdc9 (ENSMSIG00000022249) #13	Wfdc16 (ENSMSIG00000022238)	Wfdc6b (ENSMSIG00000022195) #16	Wfdc8 (ENSMSIG00000022101) #14	Eppin (ENSMSIG00000022076) #15	Wfdc6a (ENSMSIG00000022061) #16	Spint3 (ENSMSIG00000022055)	Wfdc2 (ENSMSIG00000022015) #17	Pigt (ENSMSIG00000021930) #19	Dbndd2 (ENSMSIG00000021892) #20	ENSMSIG00000021870 #21	Sys1 (ENSMSIG00000021858)	Sdc4 (ENSMSIG00000021846) #22	Rbpjl (ENSMSIG00000021772) #23	Matn4 (ENSMSIG00000021378) #24	Slpi (ENSMSIG00000021343) #25
spretus	MODERN SPECIES	11	Wfdc11 (MGP_SPRETEiJ_G0025579)	Wfdc10 (MGP_SPRETEiJ_G0025578)	Wfdc9 (MGP_SPRETEiJ_G0025577) #13	Wfdc16 (MGP_SPRETEiJ_G0025576)	MGP_SPRETEiJ_G0025575 #14	Eppin (MGP_SPRETEiJ_G0025574) #15	Spint3 (MGP_SPRETEiJ_G0025573)	Wfdc2 (MGP_SPRETEiJ_G0025572) #17	Pigt (MGP_SPRETEiJ_G0025571) #19	Dbndd2 (MGP_SPRETEiJ_G0025570) #20	Trp53tg5 (MGP_SPRETEiJ_G0025569) #21	MGP_SPRETEiJ_G0025568	MGP_SPRETEiJ_G0025567	MGP_SPRETEiJ_G0025566	Sys1 (MGP_SPRETEiJ_G0025565)	Sdc4 (MGP_SPRETEiJ_G0025564) #22	Rbpjl (MGP_SPRETEiJ_G0025563) #23	Matn4 (MGP_SPRETEiJ_G0025562) #24	Slpi (MGP_SPRETEiJ_G0025561) #25	Svs5 (MGP_SPRETEiJ_G0025560)	Svs6 (MGP_SPRETEiJ_G0025559)	Svs4 (MGP_SPRETEiJ_G0025558)	Semg1 (MGP_SPRETEiJ_G0025557)	Wfdc15b (MGP_SPRETEiJ_G0025556) #28	Wfdc15a (MGP_SPRETEiJ_G0025555) #28	Wfdc12 (MGP_SPRETEiJ_G0025554)	Wfdc5 (MGP_SPRETEiJ_G0025553) #29	Kcns1 (MGP_SPRETEiJ_G0025552) #30	Stk4 (MGP_SPRETEiJ_G0025551) #31	Tomm34 (MGP_SPRETEiJ_G0025550) #32	Pabpc1l (MGP_SPRETEiJ_G0025549) #33
Ryukyu mouse	MODERN SPECIES	11	Wfdc11 (MGP_CAROLIEiJ_G0024659)	Wfdc10 (MGP_CAROLIEiJ_G0024658)	Wfdc9 (MGP_CAROLIEiJ_G0024657) #13	Wfdc16 (MGP_CAROLIEiJ_G0024656)	MGP_CAROLIEiJ_G0024655 #16	MGP_CAROLIEiJ_G0024654 #16	MGP_CAROLIEiJ_G0024653 #14	Eppin (MGP_CAROLIEiJ_G0024652) #15	Spint3 (MGP_CAROLIEiJ_G0024651)	Wfdc2 (MGP_CAROLIEiJ_G0024650) #17	Pigt (MGP_CAROLIEiJ_G0024649) #19	Dbndd2 (MGP_CAROLIEiJ_G0024648) #20	Trp53tg5 (MGP_CAROLIEiJ_G0024647) #21	MGP_CAROLIEiJ_G0024646	Sys1 (MGP_CAROLIEiJ_G0024645)	Sdc4 (MGP_CAROLIEiJ_G0024644) #22	Rbpjl (MGP_CAROLIEiJ_G0024643) #23	Matn4 (MGP_CAROLIEiJ_G0024642) #24	Slpi (MGP_CAROLIEiJ_G0024641) #25	MGP_CAROLIEiJ_G0024640	MGP_CAROLIEiJ_G0024639	MGP_CAROLIEiJ_G0024638	MGP_CAROLIEiJ_G0024637	Semg1 (MGP_CAROLIEiJ_G0024636)	Wfdc15b (MGP_CAROLIEiJ_G0024635) #28	Svs6 (MGP_CAROLIEiJ_G0024634)	Wfdc15a (MGP_CAROLIEiJ_G0024633) #28	Wfdc12 (MGP_CAROLIEiJ_G0024632)	Wfdc5 (MGP_CAROLIEiJ_G0024631) #29	Kcns1 (MGP_CAROLIEiJ_G0024630) #30	Stk4 (MGP_CAROLIEiJ_G0024629) #31
Shrew mouse	MODERN SPECIES	16	Spint4 (MGP_PahariEiJ_G0026103) #12	Wfdc13 (MGP_PahariEiJ_G0026102)	Wfdc11 (MGP_PahariEiJ_G0026101)	Wfdc10 (MGP_PahariEiJ_G0026100)	Wfdc9 (MGP_PahariEiJ_G0026099) #13	Wfdc16 (MGP_PahariEiJ_G0026098)	MGP_PahariEiJ_G0026097 #14	Eppin (MGP_PahariEiJ_G0026096) #15	MGP_PahariEiJ_G0026095	Wfdc2 (MGP_PahariEiJ_G0026094) #17	Pigt (MGP_PahariEiJ_G0026093) #19	Dbndd2 (MGP_PahariEiJ_G0026092) #20	Trp53tg5 (MGP_PahariEiJ_G0026091) #21	MGP_PahariEiJ_G0026090	MGP_PahariEiJ_G0026089	Sdc4 (MGP_PahariEiJ_G0026088) #22	Rbpjl (MGP_PahariEiJ_G0026087) #23	Matn4 (MGP_PahariEiJ_G0026086) #24	Slpi (MGP_PahariEiJ_G0026085) #25	Svs5 (MGP_PahariEiJ_G0026084)	Svs6 (MGP_PahariEiJ_G0026083)	Svs4 (MGP_PahariEiJ_G0026082)	MGP_PahariEiJ_G0026081	MGP_PahariEiJ_G0026080	Semg1 (MGP_PahariEiJ_G0026079)	Wfdc15b (MGP_PahariEiJ_G0026078) #28	Wfdc15a (MGP_PahariEiJ_G0026077) #28	MGP_PahariEiJ_G0026076	Wfdc5 (MGP_PahariEiJ_G0026075) #29	Kcns1 (MGP_PahariEiJ_G0026074) #30	Stk4 (MGP_PahariEiJ_G0026073) #31
Rat	MODERN SPECIES	13	Wfdc13 (ENSRNOG00000045656)	ENSRNOG00000065546	Wfdc10a (ENSRNOG00000026067)	Wfdc9 (ENSRNOG00000031380) #13	Wfdc16 (ENSRNOG00000036777)	Wfdc6b (ENSRNOG00000031823) #16	Wfdc8 (ENSRNOG00000014771) #14	Eppin (ENSRNOG00000028908) #15	Wfdc6a (ENSRNOG00000042526) #16	Spint3 (ENSRNOG00000052294)	Wfdc2 (ENSRNOG00000014739) #17	ENSRNOG00000062366	Pigt (ENSRNOG00000014690) #19	Tp53tg5 (ENSRNOG00000026215) #21	Sys1 (ENSRNOG00000014480) #20	Sdc4 (ENSRNOG00000014297) #22	Rbpjl (ENSRNOG00000026295) #23	Matn4 (ENSRNOG00000014021) #24	Slpi (ENSRNOG00000046699) #25	Slpil2 (ENSRNOG00000055534) #25	Slpil3 (ENSRNOG00000046350) #25	Slpil2 (ENSRNOG00000029508) #25	LOC103690289 (ENSRNOG00000049280) #25	Svs5 (ENSRNOG00000013834)	Svs6 (ENSRNOG00000026346)	Svs3a (ENSRNOG00000062737)	Svs4 (ENSRNOG00000068526)	Svs3b (ENSRNOG00000036782)	Semg1 (ENSRNOG00000013776)	Wfdc15b (ENSRNOG00000028779) #28	Wfdc15a (ENSRNOG00000053099) #28
Upper Galilee mountains blind mole rat	MODERN SPECIES	352								ENSNGAG00000018455 #14	ENSNGAG00000023880 #16	Spint3 (ENSNGAG00000024228)	Wfdc2 (ENSNGAG00000021018) #17	Pigt (ENSNGAG00000009106) #19	Dbndd2 (ENSNGAG00000023888) #20	Trp53tg5 (ENSNGAG00000014943) #21	Sys1 (ENSNGAG00000022173)	Sdc4 (ENSNGAG00000015596) #22	Rbpjl (ENSNGAG00000009023) #23	Matn4 (ENSNGAG00000012233) #24	Slpi (ENSNGAG00000006909) #25	Wfdc15b (ENSNGAG00000022511) #28	Wfdc15a (ENSNGAG00000023289) #28
Kangaroo rat	MODERN SPECIES	332	Snx21 (ENSDORG00000011780) #7	Tnnc2 (ENSDORG00000011778) #8	ENSDORG00000011774 #9	Dnttip1 (ENSDORG00000011772) #10	ENSDORG00000026076	Wfdc3 (ENSDORG00000011771) #11	Wfdc13 (ENSDORG00000025513)	Wfdc9 (ENSDORG00000027197) #13	Eppin (ENSDORG00000016569) #15	ENSDORG00000024434 #16	ENSDORG00000015474 #17	Pigt (ENSDORG00000015789) #19	Dbndd2 (ENSDORG00000028396) #20	Trp53tg5 (ENSDORG00000015787) #21	Sys1 (ENSDORG00000015786)	Sdc4 (ENSDORG00000001016) #22	Rbpjl (ENSDORG00000001015) #23	Matn4 (ENSDORG00000001014) #24	Slpi (ENSDORG00000006613) #25	ENSDORG00000027603 #28	Wfdc5 (ENSDORG00000012524) #29	Kcns1 (ENSDORG00000027611) #30	ENSDORG00000027779	Tomm34 (ENSDORG00000001070) #32	Pabpc1l (ENSDORG00000001067) #33	Ywhab (ENSDORG00000030212) #34	Rims4 (ENSDORG00000010852) #35	Kcnk15 (ENSDORG00000012778) #36	Ccn5 (ENSDORG00000005480) #37	Ada (ENSDORG00000004804)	Pkig (ENSDORG00000026731)
Lagomorpha	ANCESTRAL SPECIES	38	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000168491	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787.a #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Pika	MODERN SPECIES	3185													DBNDD2 (ENSOPRG00000012034) #20	TP53TG5 (ENSOPRG00000012021) #21	SYS1 (ENSOPRG00000012016)	SDC4 (ENSOPRG00000012004) #22	RBPJL (ENSOPRG00000011978) #23	MATN4 (ENSOPRG00000011944) #24	SLPI (ENSOPRG00000011937) #25	ENSOPRG00000011913 #29	KCNS1 (ENSOPRG00000011900) #30	STK4 (ENSOPRG00000011874) #31	TOMM34 (ENSOPRG00000011862) #32	PABPC1L (ENSOPRG00000011846) #33	YWHAB (ENSOPRG00000011836) #34	RIMS4 (ENSOPRG00000011827) #35	ENSOPRG00000011810 #36	CCN5 (ENSOPRG00000011802) #37	ADA (ENSOPRG00000011789)	PKIG (ENSOPRG00000011784)
Rabbit	MODERN SPECIES	458	ENSOCUG00000037724 #11	ENSOCUG00000012165	SPINT4 (ENSOCUG00000012161) #12	WFDC13 (ENSOCUG00000008698)	WFDC11 (ENSOCUG00000027753)	WFDC10A (ENSOCUG00000026017)	WFDC9 (ENSOCUG00000001577) #13	WFDC8 (ENSOCUG00000014280) #14	ENSOCUG00000014275 #15	ENSOCUG00000014266 #16	ENSOCUG00000009529	ENSOCUG00000009109 #19	DBNDD2 (ENSOCUG00000022929) #20	ENSOCUG00000009104 #21	SYS1 (ENSOCUG00000009102)	SDC4 (ENSOCUG00000009097) #22	ENSOCUG00000009087 #23	MATN4 (ENSOCUG00000009079) #24	ENSOCUG00000029033	ENSOCUG00000029148	ENSOCUG00000021444 #28	WFDC5 (ENSOCUG00000020941) #29	KCNS1 (ENSOCUG00000022113) #30	STK4 (ENSOCUG00000003016) #31	TOMM34 (ENSOCUG00000003012) #32	ENSOCUG00000034534 #33	ENSOCUG00000003005 #33	YWHAB (ENSOCUG00000003002) #34	RIMS4 (ENSOCUG00000015710) #35	KCNK15 (ENSOCUG00000015707) #36
Tree shrew	MODERN SPECIES	1050														TP53TG5 (ENSTBEG00000015004) #21	SYS1 (ENSTBEG00000014984)	SDC4 (ENSTBEG00000014967) #22	ENSTBEG00000014857 #23	MATN4 (ENSTBEG00000014554) #24	PI3 (ENSTBEG00000014549)
Primates	ANCESTRAL SPECIES	17	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00940000162560	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00940000162560.c.b	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00530000064218	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Cebidae	ANCESTRAL SPECIES	13	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00530000064218	ENSGT00390000002529 #28	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Marmoset	MODERN SPECIES	17	WFDC13 (ENSCJAG00000046754)	ENSCJAG00000017373	WFDC11 (ENSCJAG00000017378)	WFDC10A (ENSCJAG00000046344)	WFDC9 (ENSCJAG00000057692) #13	ENSCJAG00000073855	ENSCJAG00000084523 #15	WFDC6 (ENSCJAG00000039425)	SPINT3 (ENSCJAG00000017400)	ENSCJAG00000073105	WFDC2 (ENSCJAG00000017405) #17	PIGT (ENSCJAG00000017414) #19	TP53TG5 (ENSCJAG00000017512) #21	DBNDD2 (ENSCJAG00000017510) #20	ENSCJAG00000017516	SDC4 (ENSCJAG00000055105) #22	RBPJL (ENSCJAG00000017526) #23	MATN4 (ENSCJAG00000017541) #24	SLPI (ENSCJAG00000017558) #25	ENSCJAG00000062624	ENSCJAG00000086097 #28	ENSCJAG00000017560	PI3 (ENSCJAG00000017566)	ENSCJAG00000067403 #28	WFDC12 (ENSCJAG00000017567)	WFDC5 (ENSCJAG00000075207) #29	KCNS1 (ENSCJAG00000017576) #30	ENSCJAG00000080912	STK4 (ENSCJAG00000017580) #31	TOMM34 (ENSCJAG00000017607) #32	PABPC1L (ENSCJAG00000017628) #33
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Capuchin	MODERN SPECIES	132	SPINT4 (ENSCCAG00000036361) #12	WFDC13 (ENSCCAG00000023254)	WFDC10B (ENSCCAG00000021961)	WFDC11 (ENSCCAG00000030414)	WFDC10A (ENSCCAG00000022325)	WFDC9 (ENSCCAG00000028056) #13	WFDC8 (ENSCCAG00000026355) #14	EPPIN (ENSCCAG00000019404) #15	WFDC6 (ENSCCAG00000015992)	SPINT3 (ENSCCAG00000030465)	WFDC2 (ENSCCAG00000036793) #17	PIGT (ENSCCAG00000033823) #19	DBNDD2 (ENSCCAG00000033524) #20	TP53TG5 (ENSCCAG00000001769) #21	SYS1 (ENSCCAG00000032353)	SDC4 (ENSCCAG00000036032) #22	RBPJL (ENSCCAG00000024391) #23	MATN4 (ENSCCAG00000029687) #24	SLPI (ENSCCAG00000022304) #25	ENSCCAG00000032624	PI3 (ENSCCAG00000035041)	WFDC12 (ENSCCAG00000031110)	WFDC5 (ENSCCAG00000029383) #29	KCNS1 (ENSCCAG00000028212) #30	STK4 (ENSCCAG00000026660) #31	TOMM34 (ENSCCAG00000030257) #32	PABPC1L (ENSCCAG00000023338) #33	YWHAB (ENSCCAG00000022692) #34	RIMS4 (ENSCCAG00000028364) #35	KCNK15 (ENSCCAG00000033435) #36	CCN5 (ENSCCAG00000027495) #37
Bolivian squirrel monkey	MODERN SPECIES	126	WFDC3 (ENSSBOG00000023155) #11	SPINT4 (ENSSBOG00000028317) #12	WFDC13 (ENSSBOG00000027591)	WFDC10B (ENSSBOG00000033068)	WFDC10A (ENSSBOG00000028019)	WFDC9 (ENSSBOG00000035817) #13	WFDC8 (ENSSBOG00000025312) #14	ENSSBOG00000020902 #15	WFDC6 (ENSSBOG00000034917)	SPINT3 (ENSSBOG00000027651)	WFDC2 (ENSSBOG00000029607) #17	PIGT (ENSSBOG00000023153) #19	DBNDD2 (ENSSBOG00000032230) #20	TP53TG5 (ENSSBOG00000011757) #21	SYS1 (ENSSBOG00000029820)	SDC4 (ENSSBOG00000022591) #22	RBPJL (ENSSBOG00000026909) #23	MATN4 (ENSSBOG00000018281) #24	SLPI (ENSSBOG00000020031) #25	ENSSBOG00000025821	PI3 (ENSSBOG00000019375)	WFDC12 (ENSSBOG00000024796)	WFDC5 (ENSSBOG00000034340) #29	KCNS1 (ENSSBOG00000031287) #30	STK4 (ENSSBOG00000029255) #31	TOMM34 (ENSSBOG00000030705) #32	PABPC1L (ENSSBOG00000009532) #33	YWHAB (ENSSBOG00000024289) #34	RIMS4 (ENSSBOG00000032430) #35	CCN5 (ENSSBOG00000024221) #37	ADA (ENSSBOG00000031670)
Mas night monkey	MODERN SPECIES	1347	DNTTIP1 (ENSANAG00000025588) #10	ENSANAG00000035755 #11	WFDC13 (ENSANAG00000035207)	WFDC10B (ENSANAG00000031876)	ENSANAG00000014170	WFDC10A (ENSANAG00000026422)	WFDC9 (ENSANAG00000028927) #13	WFDC8 (ENSANAG00000026757) #14	ENSANAG00000024252 #15	WFDC6 (ENSANAG00000024484)	WFDC2 (ENSANAG00000038197) #17	PIGT (ENSANAG00000022161) #19	DBNDD2 (ENSANAG00000024579) #20	TP53TG5 (ENSANAG00000019284) #21	SYS1 (ENSANAG00000020351)	SDC4 (ENSANAG00000036656) #22	RBPJL (ENSANAG00000021753) #23	MATN4 (ENSANAG00000028420) #24	SLPI (ENSANAG00000026261) #25	WFDC12 (ENSANAG00000026150)	WFDC5 (ENSANAG00000023343) #29	PI3 (ENSANAG00000034119)	KCNS1 (ENSANAG00000037226) #30	ENSANAG00000033882	STK4 (ENSANAG00000024625) #31	TOMM34 (ENSANAG00000035543) #32	PABPC1L (ENSANAG00000026826) #33	YWHAB (ENSANAG00000028424) #34	ENSANAG00000003964	RIMS4 (ENSANAG00000025921) #35	KCNK15 (ENSANAG00000025827) #36
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00940000162560.c.b	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00940000162560.c.b	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Hominidae	ANCESTRAL SPECIES	18	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00940000162560.c.b	ENSGT00940000162560.d	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35
Orangutan	MODERN SPECIES	11	SPINT4 (ENSPPYG00000011067) #12	WFDC13 (ENSPPYG00000036444)	ENSPPYG00000011066	WFDC11 (ENSPPYG00000011065)	WFDC10A (ENSPPYG00000011064)	WFDC9 (ENSPPYG00000011063) #13	WFDC8 (ENSPPYG00000011062) #14	EPPIN (ENSPPYG00000011061) #15	ENSPPYG00000037141	SPINT3 (ENSPPYG00000011060)	WFDC2 (ENSPPYG00000030993) #17	PIGT (ENSPPYG00000011057) #19	DBNDD2 (ENSPPYG00000011055) #20	TP53TG5 (ENSPPYG00000011056) #21	SYS1 (ENSPPYG00000036501)	SDC4 (ENSPPYG00000038657) #22	RBPJL (ENSPPYG00000011053) #23	MATN4 (ENSPPYG00000011052) #24	SLPI (ENSPPYG00000011051) #25	ENSPPYG00000041042 #28	SEMG2 (ENSPPYG00000032101)	ENSPPYG00000011050	PI3 (ENSPPYG00000011049)	WFDC12 (ENSPPYG00000011048)	WFDC5 (ENSPPYG00000011047) #29	KCNS1 (ENSPPYG00000011046) #30	STK4 (ENSPPYG00000011045) #31	TOMM34 (ENSPPYG00000011044) #32	PABPC1L (ENSPPYG00000011042) #33	YWHAB (ENSPPYG00000011041) #34	RIMS4 (ENSPPYG00000033050) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00910000148558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.d	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Gorilla	MODERN SPECIES	11	WFDC13 (ENSGGOG00000016044)	ENSGGOG00000039808	WFDC11 (ENSGGOG00000022748)	WFDC10A (ENSGGOG00000012433)	WFDC9 (ENSGGOG00000007042) #13	WFDC8 (ENSGGOG00000006521) #14	EPPIN (ENSGGOG00000044201) #15	ENSGGOG00000014420	SPINT3 (ENSGGOG00000043047)	WFDC2 (ENSGGOG00000004175) #17	ENSGGOG00000022433	PIGT (ENSGGOG00000004168) #19	ENSGGOG00000004164 #20	TP53TG5 (ENSGGOG00000004159) #21	SYS1 (ENSGGOG00000004155)	SDC4 (ENSGGOG00000004153) #22	RBPJL (ENSGGOG00000004147) #23	MATN4 (ENSGGOG00000004140) #24	SLPI (ENSGGOG00000016177) #25	SEMG2 (ENSGGOG00000002554)	ENSGGOG00000041390	PI3 (ENSGGOG00000027291)	WFDC12 (ENSGGOG00000023468)	ENSGGOG00000003007 #29	KCNS1 (ENSGGOG00000042845) #30	STK4 (ENSGGOG00000003234) #31	TOMM34 (ENSGGOG00000003560) #32	PABPC1L (ENSGGOG00000004584) #33	YWHAB (ENSGGOG00000004580) #34	RIMS4 (ENSGGOG00000013710) #35	KCNK15 (ENSGGOG00000013704) #36
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00910000148558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.d	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Human	MODERN SPECIES	12	WFDC13 (ENSG00000168634)	WFDC10B (ENSG00000182931)	WFDC11 (ENSG00000180083)	WFDC10A (ENSG00000180305)	WFDC9 (ENSG00000180205) #13	WFDC8 (ENSG00000158901) #14	EPPIN (ENSG00000101448) #15	EPPIN-WFDC6 (ENSG00000249139)	WFDC6 (ENSG00000243543)	SPINT3 (ENSG00000101446)	WFDC2 (ENSG00000101443) #17	PIGT (ENSG00000124155) #19	DBNDD2 (ENSG00000244274) #20	TP53TG5 (ENSG00000124251) #21	SYS1 (ENSG00000204070)	SDC4 (ENSG00000124145) #22	RBPJL (ENSG00000124232) #23	MATN4 (ENSG00000124159) #24	SLPI (ENSG00000124107) #25	SEMG2 (ENSG00000124157)	SEMG1 (ENSG00000124233)	PI3 (ENSG00000124102)	WFDC12 (ENSG00000168703)	WFDC5 (ENSG00000175121) #29	KCNS1 (ENSG00000124134) #30	STK4 (ENSG00000101109) #31	TOMM34 (ENSG00000025772) #32	PABPC1L (ENSG00000101104) #33	YWHAB (ENSG00000166913) #34	RIMS4 (ENSG00000101098) #35	KCNK15 (ENSG00000124249) #36
Pan	ANCESTRAL SPECIES	15	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00910000148558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.d	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Chimpanzee	MODERN SPECIES	11	SPINT4 (ENSPTRG00000013560) #12	WFDC13 (ENSPTRG00000049690)	WFDC10B (ENSPTRG00000013558)	WFDC11 (ENSPTRG00000013557)	WFDC10A (ENSPTRG00000013555)	WFDC9 (ENSPTRG00000013554) #13	WFDC8 (ENSPTRG00000013553) #14	EPPIN (ENSPTRG00000013552) #15	ENSPTRG00000044911	SPINT3 (ENSPTRG00000013550)	WFDC2 (ENSPTRG00000013549) #17	PIGT (ENSPTRG00000013547) #19	DBNDD2 (ENSPTRG00000013544) #20	TP53TG5 (ENSPTRG00000013545) #21	SYS1 (ENSPTRG00000032508)	SDC4 (ENSPTRG00000049711) #22	RBPJL (ENSPTRG00000013542) #23	MATN4 (ENSPTRG00000013541) #24	SLPI (ENSPTRG00000013540) #25	SEMG2 (ENSPTRG00000013538)	SEMG1 (ENSPTRG00000044347)	PI3 (ENSPTRG00000013537)	WFDC12 (ENSPTRG00000013536)	WFDC5 (ENSPTRG00000013535) #29	KCNS1 (ENSPTRG00000013534) #30	STK4 (ENSPTRG00000013533) #31	TOMM34 (ENSPTRG00000013532) #32	ENSPTRG00000044192 #33	PABPC1L (ENSPTRG00000013531) #33	YWHAB (ENSPTRG00000013529) #34	RIMS4 (ENSPTRG00000013528) #35
Bonobo	MODERN SPECIES	11	ENSPPAG00000041827	WFDC13 (ENSPPAG00000041514)	WFDC10B (ENSPPAG00000041406)	WFDC11 (ENSPPAG00000040844)	ENSPPAG00000036261	WFDC9 (ENSPPAG00000035545) #13	WFDC8 (ENSPPAG00000034054) #14	EPPIN (ENSPPAG00000032599) #15	WFDC6 (ENSPPAG00000032127)	WFDC2 (ENSPPAG00000031602) #17	ENSPPAG00000033220	PIGT (ENSPPAG00000031078) #19	ENSPPAG00000038202 #20	TP53TG5 (ENSPPAG00000034658) #21	SYS1 (ENSPPAG00000039458)	SDC4 (ENSPPAG00000026773) #22	RBPJL (ENSPPAG00000037289) #23	MATN4 (ENSPPAG00000035708) #24	SLPI (ENSPPAG00000031762) #25	SEMG2 (ENSPPAG00000029249)	SEMG1 (ENSPPAG00000028529)	PI3 (ENSPPAG00000027163)	WFDC12 (ENSPPAG00000000101)	ENSPPAG00000038621 #29	KCNS1 (ENSPPAG00000037133) #30	STK4 (ENSPPAG00000027517) #31	TOMM34 (ENSPPAG00000043523) #32	PABPC1L (ENSPPAG00000039677) #33	YWHAB (ENSPPAG00000036479) #34	RIMS4 (ENSPPAG00000033892) #35	KCNK15 (ENSPPAG00000033660) #36
Gibbon	MODERN SPECIES	3	SPINT4 (ENSNLEG00000006766) #12	WFDC13 (ENSNLEG00000006763)	ENSNLEG00000006759	WFDC11 (ENSNLEG00000006756)	WFDC9 (ENSNLEG00000006750) #13	WFDC10A (ENSNLEG00000006753)	WFDC8 (ENSNLEG00000006749) #14	EPPIN (ENSNLEG00000035598) #15	ENSNLEG00000006746	SPINT3 (ENSNLEG00000006745)	WFDC2 (ENSNLEG00000006742) #17	PIGT (ENSNLEG00000006720) #19	ENSNLEG00000006712 #20	TP53TG5 (ENSNLEG00000006708) #21	SYS1 (ENSNLEG00000028851)	SDC4 (ENSNLEG00000006698) #22	ENSNLEG00000006697 #23	ENSNLEG00000006692 #24	SLPI (ENSNLEG00000006690) #25	PI3 (ENSNLEG00000006687)	WFDC12 (ENSNLEG00000006683)	WFDC5 (ENSNLEG00000006681) #29	KCNS1 (ENSNLEG00000006677) #30	STK4 (ENSNLEG00000006664) #31	TOMM34 (ENSNLEG00000006657) #32	ENSNLEG00000006653 #33	YWHAB (ENSNLEG00000006643) #34	RIMS4 (ENSNLEG00000006640) #35	KCNK15 (ENSNLEG00000031103) #36	CCN5 (ENSNLEG00000006637) #37	ADA (ENSNLEG00000006622)
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c.a #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c.a #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Macaca	ANCESTRAL SPECIES	16	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c.a #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Pig-tailed macaque	MODERN SPECIES	232	WFDC13 (ENSMNEG00000029612)	WFDC10B (ENSMNEG00000041708)	WFDC11 (ENSMNEG00000002643)	WFDC9 (ENSMNEG00000045302) #13	WFDC10A (ENSMNEG00000030989)	WFDC8 (ENSMNEG00000043495) #14	ENSMNEG00000035516 #15	EPPIN (ENSMNEG00000031072) #15	WFDC6 (ENSMNEG00000029781)	SPINT3 (ENSMNEG00000038834)	WFDC2 (ENSMNEG00000035443) #17	PIGT (ENSMNEG00000042427) #19	DBNDD2 (ENSMNEG00000041743) #20	TP53TG5 (ENSMNEG00000035261) #21	SYS1 (ENSMNEG00000032249)	SDC4 (ENSMNEG00000040966) #22	RBPJL (ENSMNEG00000036874) #23	MATN4 (ENSMNEG00000040197) #24	SLPI (ENSMNEG00000032041) #25	SEMG2 (ENSMNEG00000034874)	ENSMNEG00000040286	PI3 (ENSMNEG00000033969)	WFDC12 (ENSMNEG00000042922)	WFDC5 (ENSMNEG00000039120) #29	KCNS1 (ENSMNEG00000040885) #30	STK4 (ENSMNEG00000008565) #31	TOMM34 (ENSMNEG00000007455) #32	PABPC1L (ENSMNEG00000032298) #33	YWHAB (ENSMNEG00000038853) #34	RIMS4 (ENSMNEG00000036601) #35	KCNK15 (ENSMNEG00000036591) #36
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c.a #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160207 #37
Crab-eating macaque	MODERN SPECIES	1	DNTTIP1 (ENSMFAG00000044013) #10	WFDC3 (ENSMFAG00000042167) #11	SPINT4 (ENSMFAG00000055751) #12	WFDC13 (ENSMFAG00000001764)	WFDC10B (ENSMFAG00000034127)	WFDC11 (ENSMFAG00000040005)	WFDC10A (ENSMFAG00000045953)	WFDC9 (ENSMFAG00000036538) #13	WFDC8 (ENSMFAG00000030907) #14	EPPIN (ENSMFAG00000000643) #15	WFDC6 (ENSMFAG00000001682)	SPINT3 (ENSMFAG00000042089)	WFDC2 (ENSMFAG00000030693) #17	TP53TG5 (ENSMFAG00000043463) #21	PIGT (ENSMFAG00000043460) #19	SDC4 (ENSMFAG00000051697) #22	RBPJL (ENSMFAG00000041142) #23	MATN4 (ENSMFAG00000042342) #24	SLPI (ENSMFAG00000040605) #25	SEMG2 (ENSMFAG00000003613)	ENSMFAG00000042736	PI3 (ENSMFAG00000045404)	WFDC12 (ENSMFAG00000002898)	WFDC5 (ENSMFAG00000043142) #29	KCNS1 (ENSMFAG00000053982) #30	STK4 (ENSMFAG00000030410) #31	TOMM34 (ENSMFAG00000042107) #32	PABPC1L (ENSMFAG00000040365) #33	ENSMFAG00000051790	YWHAB (ENSMFAG00000043236) #34	RIMS4 (ENSMFAG00000052597) #35
Rhesus	MODERN SPECIES	1	WFDC13 (ENSMMUG00000059606)	WFDC10B (ENSMMUG00000063720)	WFDC11 (ENSMMUG00000060335)	WFDC10A (ENSMMUG00000003803)	WFDC9 (ENSMMUG00000062371) #13	WFDC8 (ENSMMUG00000054508) #14	SPINLW1 (ENSMMUG00000003806) #15	WFDC6 (ENSMMUG00000003809)	SPINT3 (ENSMMUG00000039638)	WFDC2 (ENSMMUG00000002751) #17	PIGT (ENSMMUG00000003410) #19	TP53TG5 (ENSMMUG00000003408) #21	DBNDD2 (ENSMMUG00000003409) #20	SYS1 (ENSMMUG00000063632)	ENSMMUG00000056860	SDC4 (ENSMMUG00000048424) #22	RBPJL (ENSMMUG00000003404) #23	MATN4 (ENSMMUG00000003402) #24	SLPI (ENSMMUG00000050091) #25	SEMG2 (ENSMMUG00000017560)	ENSMMUG00000062738	PI3 (ENSMMUG00000063099)	WFDC12 (ENSMMUG00000013217)	WFDC5 (ENSMMUG00000013216) #29	KCNS1 (ENSMMUG00000013214) #30	STK4 (ENSMMUG00000013212) #31	TOMM34 (ENSMMUG00000013211) #32	PABPC1L (ENSMMUG00000013209) #33	YWHAB (ENSMMUG00000013206) #34	RIMS4 (ENSMMUG00000050253) #35	CCN5 (ENSMMUG00000045256) #37
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c.a #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Olive baboon	MODERN SPECIES	7	SPINT4 (ENSPANG00000020554) #12	WFDC13 (ENSPANG00000020820)	WFDC10B (ENSPANG00000020553)	WFDC11 (ENSPANG00000021099)	WFDC10A (ENSPANG00000030945)	WFDC9 (ENSPANG00000025058) #13	WFDC8 (ENSPANG00000011736) #14	EPPIN (ENSPANG00000036178) #15	WFDC6 (ENSPANG00000007530)	SPINT3 (ENSPANG00000018564)	WFDC2 (ENSPANG00000015717) #17	PIGT (ENSPANG00000026137) #19	DBNDD2 (ENSPANG00000024781) #20	TP53TG5 (ENSPANG00000011734) #21	SYS1 (ENSPANG00000042818)	SDC4 (ENSPANG00000043137) #22	RBPJL (ENSPANG00000024780) #23	MATN4 (ENSPANG00000009740) #24	SLPI (ENSPANG00000020369) #25	SEMG2 (ENSPANG00000021787)	ENSPANG00000025057	PI3 (ENSPANG00000023203)	WFDC12 (ENSPANG00000026136)	WFDC5 (ENSPANG00000007528) #29	KCNS1 (ENSPANG00000011732) #30	STK4 (ENSPANG00000022566) #31	TOMM34 (ENSPANG00000024779) #32	PABPC1L (ENSPANG00000018788) #33	YWHAB (ENSPANG00000004093) #34	RIMS4 (ENSPANG00000000384) #35	KCNK15 (ENSPANG00000024499) #36
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c.a #15	ENSGT00940000156753.c.b #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Sooty mangabey	MODERN SPECIES	135	SPINT4 (ENSCATG00000029732) #12	WFDC13 (ENSCATG00000036819)	WFDC10B (ENSCATG00000038842)	WFDC11 (ENSCATG00000037724)	WFDC10A (ENSCATG00000036754)	WFDC9 (ENSCATG00000032455) #13	WFDC8 (ENSCATG00000036752) #14	ENSCATG00000038297 #15	ENSCATG00000043423 #15	SPINT3 (ENSCATG00000043209)	WFDC2 (ENSCATG00000031884) #17	PIGT (ENSCATG00000029575) #19	DBNDD2 (ENSCATG00000039410) #20	TP53TG5 (ENSCATG00000043897) #21	SYS1 (ENSCATG00000034051)	SDC4 (ENSCATG00000039284) #22	RBPJL (ENSCATG00000032067) #23	MATN4 (ENSCATG00000039573) #24	SLPI (ENSCATG00000039703) #25	SEMG2 (ENSCATG00000032248)	ENSCATG00000043356	PI3 (ENSCATG00000033416)	WFDC12 (ENSCATG00000008472)	WFDC5 (ENSCATG00000037942) #29	KCNS1 (ENSCATG00000035789) #30	STK4 (ENSCATG00000031683) #31	TOMM34 (ENSCATG00000029810) #32	PABPC1L (ENSCATG00000034065) #33	YWHAB (ENSCATG00000041005) #34	RIMS4 (ENSCATG00000030559) #35	KCNK15 (ENSCATG00000032698) #36
Drill	MODERN SPECIES	1241															SYS1 (ENSMLEG00000033215)	SDC4 (ENSMLEG00000033097) #22	RBPJL (ENSMLEG00000037019) #23	MATN4 (ENSMLEG00000042104) #24	SLPI (ENSMLEG00000032321) #25	SEMG2 (ENSMLEG00000039123)	ENSMLEG00000042661	PI3 (ENSMLEG00000031261)	WFDC12 (ENSMLEG00000043515)	WFDC5 (ENSMLEG00000035265) #29	KCNS1 (ENSMLEG00000040227) #30	STK4 (ENSMLEG00000030790) #31	TOMM34 (ENSMLEG00000033571) #32	PABPC1L (ENSMLEG00000043139) #33	YWHAB (ENSMLEG00000039705) #34	RIMS4 (ENSMLEG00000033781) #35	KCNK15 (ENSMLEG00000031110) #36
Vervet Monkey	MODERN SPECIES	11	SPINT4 (ENSCSAG00000014479) #12	WFDC13 (ENSCSAG00000014472)	WFDC11 (ENSCSAG00000014467)	WFDC10A (ENSCSAG00000014461)	WFDC9 (ENSCSAG00000014453) #13	WFDC8 (ENSCSAG00000014443) #14	EPPIN (ENSCSAG00000014427) #15	ENSCSAG00000014418	SPINT3 (ENSCSAG00000014410)	WFDC2 (ENSCSAG00000014404) #17	ENSCSAG00000018749	PIGT (ENSCSAG00000014400) #19	DBNDD2 (ENSCSAG00000014390) #20	TP53TG5 (ENSCSAG00000014382) #21	SYS1 (ENSCSAG00000014370)	SDC4 (ENSCSAG00000014364) #22	RBPJL (ENSCSAG00000014350) #23	MATN4 (ENSCSAG00000014320) #24	SLPI (ENSCSAG00000014312) #25	SEMG2 (ENSCSAG00000014308)	PI3 (ENSCSAG00000014300)	WFDC12 (ENSCSAG00000014294)	WFDC5 (ENSCSAG00000014282) #29	ENSCSAG00000014275 #30	STK4 (ENSCSAG00000014271) #31	TOMM34 (ENSCSAG00000014257) #32	PABPC1L (ENSCSAG00000014242) #33	YWHAB (ENSCSAG00000014209) #34	RIMS4 (ENSCSAG00000014202) #35	KCNK15 (ENSCSAG00000014197) #36	CCN5 (ENSCSAG00000014192) #37
Rhinopithecus	ANCESTRAL SPECIES	51	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000164575	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00940000162560.c.b	ENSGT00940000162560.c.a	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT01050000245888
Black snub-nosed monkey	MODERN SPECIES	592	SPINT4 (ENSRBIG00000017963) #12	WFDC13 (ENSRBIG00000014744)	WFDC10B (ENSRBIG00000033084)	WFDC11 (ENSRBIG00000020823)	WFDC9 (ENSRBIG00000028554) #13	WFDC10A (ENSRBIG00000029259)	WFDC8 (ENSRBIG00000031942) #14	EPPIN (ENSRBIG00000026203) #15	ENSRBIG00000030690	SPINT3 (ENSRBIG00000029466)	WFDC2 (ENSRBIG00000037385) #17	PIGT (ENSRBIG00000021342) #19	DBNDD2 (ENSRBIG00000042541) #20	TP53TG5 (ENSRBIG00000044037) #21	SYS1 (ENSRBIG00000022011)	SDC4 (ENSRBIG00000043866) #22	RBPJL (ENSRBIG00000042360) #23	MATN4 (ENSRBIG00000031254) #24	SLPI (ENSRBIG00000036164) #25	ENSRBIG00000034772 #28	SEMG2 (ENSRBIG00000038051)	ENSRBIG00000041881	PI3 (ENSRBIG00000025750)	WFDC12 (ENSRBIG00000036554)	WFDC5 (ENSRBIG00000036014) #29	KCNS1 (ENSRBIG00000041589) #30	STK4 (ENSRBIG00000038534) #31	TOMM34 (ENSRBIG00000024161) #32	PABPC1L (ENSRBIG00000035381) #33	YWHAB (ENSRBIG00000041262) #34	ENSRBIG00000006078
Golden snub-nosed monkey	MODERN SPECIES	2477	SPINT4 (ENSRROG00000044092) #12	WFDC13 (ENSRROG00000044109)	WFDC10B (ENSRROG00000029995)	WFDC11 (ENSRROG00000036733)	WFDC10A (ENSRROG00000036458)	WFDC9 (ENSRROG00000034695) #13	WFDC8 (ENSRROG00000027199) #14	EPPIN (ENSRROG00000030114) #15	ENSRROG00000041749	SPINT3 (ENSRROG00000045414)	WFDC2 (ENSRROG00000036001) #17	PIGT (ENSRROG00000035840) #19	DBNDD2 (ENSRROG00000030955) #20	TP53TG5 (ENSRROG00000037864) #21	SYS1 (ENSRROG00000025393)	SDC4 (ENSRROG00000044358) #22	RBPJL (ENSRROG00000033553) #23	MATN4 (ENSRROG00000033905) #24	SLPI (ENSRROG00000028775) #25	SEMG2 (ENSRROG00000039656)	ENSRROG00000044747	PI3 (ENSRROG00000038794)	WFDC12 (ENSRROG00000038861)	WFDC5 (ENSRROG00000031148) #29	KCNS1 (ENSRROG00000044954) #30	STK4 (ENSRROG00000045126) #31	TOMM34 (ENSRROG00000033038) #32	PABPC1L (ENSRROG00000044498) #33	YWHAB (ENSRROG00000031954) #34	ENSRROG00000041971	RIMS4 (ENSRROG00000040722) #35
Tarsier	MODERN SPECIES	4285												PIGT (ENSTSYG00000013398) #19	DBNDD2 (ENSTSYG00000013391) #20	TP53TG5 (ENSTSYG00000009132) #21	SYS1 (ENSTSYG00000009093)	SDC4 (ENSTSYG00000031873) #22	RBPJL (ENSTSYG00000035840) #23	MATN4 (ENSTSYG00000011298) #24	SLPI (ENSTSYG00000011337) #25
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Mouse lemur	MODERN SPECIES	9	RBBP9 (ENSMICG00000047808)	POLR3F (ENSMICG00000044519)	DZANK1 (ENSMICG00000010726)	ZNF133 (ENSMICG00000010713)	KAT14 (ENSMICG00000014378)	OVOL2 (ENSMICG00000032455)	ENSMICG00000014350	ENSMICG00000014327	ENSMICG00000032475	WFDC9 (ENSMICG00000029861) #13	WFDC2 (ENSMICG00000015749) #17	PIGT (ENSMICG00000013782) #19	DBNDD2 (ENSMICG00000031138) #20	TP53TG5 (ENSMICG00000014268) #21	SYS1 (ENSMICG00000028195)	SDC4 (ENSMICG00000032459) #22	RBPJL (ENSMICG00000014225) #23	MATN4 (ENSMICG00000014207) #24	PI3 (ENSMICG00000000987)	WFDC12 (ENSMICG00000000986)	WFDC5 (ENSMICG00000046725) #29	KCNS1 (ENSMICG00000000984) #30	STK4 (ENSMICG00000000982) #31	ENSMICG00000047226	TOMM34 (ENSMICG00000032653) #32	ENSMICG00000000974 #33	ENSMICG00000027004	YWHAB (ENSMICG00000037501) #34	RIMS4 (ENSMICG00000042022) #35	KCNK15 (ENSMICG00000008293) #36	CCN5 (ENSMICG00000028370) #37
Lemuriformes_a	ANCESTRAL SPECIES	121							ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Greater bamboo lemur	MODERN SPECIES	494									ENSPSMG00000024756 #14	ENSPSMG00000024761 #15	WFDC2 (ENSPSMG00000024768) #17	PIGT (ENSPSMG00000024987) #19	DBNDD2 (ENSPSMG00000025056) #20	ENSPSMG00000025057 #21	SYS1 (ENSPSMG00000025062)	SDC4 (ENSPSMG00000025079) #22	RBPJL (ENSPSMG00000025089) #23	MATN4 (ENSPSMG00000025124) #24	SLPI (ENSPSMG00000025128) #25	ENSPSMG00000025133 #28
Coquerels sifaka	MODERN SPECIES	726				KAT14 (ENSPCOG00000019175)	PET117 (ENSPCOG00000016324)	OVOL2 (ENSPCOG00000013518)	MGME1 (ENSPCOG00000015171)	ENSPCOG00000022344	WFDC8 (ENSPCOG00000010546) #14	SPINT3 (ENSPCOG00000025172)	WFDC2 (ENSPCOG00000006789) #17	PIGT (ENSPCOG00000026612) #19	DBNDD2 (ENSPCOG00000025131) #20	TP53TG5 (ENSPCOG00000023205) #21	SYS1 (ENSPCOG00000023666)	SDC4 (ENSPCOG00000023225) #22	RBPJL (ENSPCOG00000027026) #23	MATN4 (ENSPCOG00000014393) #24	SLPI (ENSPCOG00000020689) #25	PI3 (ENSPCOG00000019903)	WFDC12 (ENSPCOG00000018285)	WFDC5 (ENSPCOG00000017628) #29	KCNS1 (ENSPCOG00000022498) #30	STK4 (ENSPCOG00000018747) #31	TOMM34 (ENSPCOG00000026632) #32	PABPC1L (ENSPCOG00000020630) #33	YWHAB (ENSPCOG00000027996) #34	RIMS4 (ENSPCOG00000018866) #35	KCNK15 (ENSPCOG00000017144) #36	CCN5 (ENSPCOG00000000043) #37	ADA (ENSPCOG00000021160)
Bushbaby	MODERN SPECIES	138	TNNC2 (ENSOGAG00000033602) #8	ENSOGAG00000004989 #9	DNTTIP1 (ENSOGAG00000004985) #10	ENSOGAG00000004974 #11	ENSOGAG00000011999	SPINT4 (ENSOGAG00000004983) #12	WFDC13 (ENSOGAG00000004981)	WFDC10B (ENSOGAG00000031773)	WFDC8 (ENSOGAG00000010398) #14	ENSOGAG00000028989 #15	ENSOGAG00000010396 #17	PIGT (ENSOGAG00000010389) #19	DBNDD2 (ENSOGAG00000010386) #20	TP53TG5 (ENSOGAG00000010381) #21	SYS1 (ENSOGAG00000025081)	SDC4 (ENSOGAG00000007291) #22	RBPJL (ENSOGAG00000024900) #23	MATN4 (ENSOGAG00000007290) #24	ENSOGAG00000024142	SLPI (ENSOGAG00000005681) #25	ENSOGAG00000024067	ENSOGAG00000034580	PI3 (ENSOGAG00000006670)	WFDC5 (ENSOGAG00000006665) #29	KCNS1 (ENSOGAG00000025880) #30	STK4 (ENSOGAG00000006656) #31	TOMM34 (ENSOGAG00000008911) #32	PABPC1L (ENSOGAG00000032999) #33	ENSOGAG00000008909 #34	RIMS4 (ENSOGAG00000011045) #35	KCNK15 (ENSOGAG00000012557) #36
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Eulipotyphla	ANCESTRAL SPECIES	505																ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24
Hedgehog	MODERN SPECIES	2362																SDC4 (ENSEEUG00000013094) #22	RBPJL (ENSEEUG00000013039) #23	ENSEEUG00000013001 #24
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Suina	ANCESTRAL SPECIES	9	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT00990000214118	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Chacoan peccary	MODERN SPECIES	801	WFDC9 (ENSCWAG00000011725) #13	ENSCWAG00000011782	WFDC8 (ENSCWAG00000011810) #14	EPPIN (ENSCWAG00000011878) #15	ENSCWAG00000011972 #16	WFDC2 (ENSCWAG00000012072) #17	ENSCWAG00000003825	ENSCWAG00000003889	ENSCWAG00000003915 #18	ENSCWAG00000003936 #18	ENSCWAG00000003963	PIGT (ENSCWAG00000004048) #19	DBNDD2 (ENSCWAG00000004311) #20	TP53TG5 (ENSCWAG00000004334) #21	SYS1 (ENSCWAG00000004386)	SDC4 (ENSCWAG00000004425) #22	RBPJL (ENSCWAG00000004460) #23	MATN4 (ENSCWAG00000004660) #24	SLPI (ENSCWAG00000004727) #25	ENSCWAG00000004755	ENSCWAG00000004793 #28	PI3 (ENSCWAG00000004809)	WFDC5 (ENSCWAG00000004837) #29	KCNS1 (ENSCWAG00000004858) #30	STK4 (ENSCWAG00000004891) #31	TOMM34 (ENSCWAG00000004944) #32	PABPC1L (ENSCWAG00000004972) #33	YWHAB (ENSCWAG00000005075) #34	RIMS4 (ENSCWAG00000005095) #35	KCNK15 (ENSCWAG00000005153) #36	CCN5 (ENSCWAG00000005177) #37
Pig	MODERN SPECIES	8	ENSSSCG00000040753	WFDC8 (ENSSSCG00000007407) #14	EPPIN (ENSSSCG00000033572) #15	ENSSSCG00000039858 #16	ENSSSCG00000043442	WFDC2 (ENSSSCG00000033003) #17	ENSSSCG00000035724	ENSSSCG00000051240	PTI (ENSSSCG00000062723) #18	ENSSSCG00000035296 #18	ENSSSCG00000007398	PIGT (ENSSSCG00000021861) #19	DBNDD2 (ENSSSCG00000033586) #20	TP53TG5 (ENSSSCG00000037072) #21	SYS1 (ENSSSCG00000007395)	ENSSSCG00000038594 #22	RBPJL (ENSSSCG00000037156) #23	MATN4 (ENSSSCG00000007391) #24	SLPI (ENSSSCG00000039573) #25	ENSSSCG00000022258	ENSSSCG00000033906 #28	SPAI-2 (ENSSSCG00000033675)	ENSSSCG00000035053	WFDC5 (ENSSSCG00000007384) #29	KCNS1 (ENSSSCG00000007385) #30	STK4 (ENSSSCG00000030820) #31	TOMM34 (ENSSSCG00000007383) #32	PABPC1L (ENSSSCG00000007382) #33	YWHAB (ENSSSCG00000007381) #34	ENSSSCG00000051506	RIMS4 (ENSSSCG00000021453) #35
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890.a	ENSGT01100000263611 #18	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890.a.a	ENSGT00940000168491	ENSGT01100000263791.b.a	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00730000111454 #11	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890.a.a	ENSGT00940000168491	ENSGT01100000263791.b.a	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00510000047836 #10	ENSGT00960000192620	ENSGT00730000111454 #11	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890.a.a	ENSGT00940000168491	ENSGT01100000263791.b.b	ENSGT01100000263791.b.a	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00510000047836 #10	ENSGT00960000192620	ENSGT00730000111454 #11	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890.a.a	ENSGT00940000168491	ENSGT01100000263791.b.b	ENSGT01100000263791.b.a	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00510000047836 #10	ENSGT00960000192620	ENSGT00730000111454 #11	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890.a.a	ENSGT00940000168491	ENSGT01100000263791.b.b	ENSGT01100000263791.b.a	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00960000193217	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.eb #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Beluga whale	MODERN SPECIES	36	TNNC2 (ENSDLEG00000001354) #8	UBE2C (ENSDLEG00000001381) #9	DNTTIP1 (ENSDLEG00000001413) #10	ENSDLEG00000001470	ENSDLEG00000001480 #11	WFDC2 (ENSDLEG00000001494) #17	ENSDLEG00000001514	ENSDLEG00000001534	ENSDLEG00000001549	ENSDLEG00000001557 #18	ENSDLEG00000001568	PIGT (ENSDLEG00000001575) #19	DBNDD2 (ENSDLEG00000001600) #20	TP53TG5 (ENSDLEG00000001614) #21	ENSDLEG00000001642	SDC4 (ENSDLEG00000001654) #22	RBPJL (ENSDLEG00000001689) #23	MATN4 (ENSDLEG00000001812) #24	SLPI (ENSDLEG00000001986) #25	ENSDLEG00000001995 #28	PI3 (ENSDLEG00000002049)	KCNS1 (ENSDLEG00000002061) #30	STK4 (ENSDLEG00000002074) #31	TOMM34 (ENSDLEG00000002102) #32	ENSDLEG00000002129 #33	ENSDLEG00000002156 #33	YWHAB (ENSDLEG00000002168) #34	RIMS4 (ENSDLEG00000002203) #35	KCNK15 (ENSDLEG00000002212) #36	CCN5 (ENSDLEG00000002229) #37	ADA (ENSDLEG00000002282)
Narwhal	MODERN SPECIES	299	SNX21 (ENSMMNG00015003926) #7	TNNC2 (ENSMMNG00015003951) #8	UBE2C (ENSMMNG00015003980) #9	ENSMMNG00015004022 #11	SPINT3 (ENSMMNG00015004033)	WFDC2 (ENSMMNG00015004049) #17	ENSMMNG00015004074	PIGT (ENSMMNG00015004156) #19	ENSMMNG00015004240	ENSMMNG00015004251	ENSMMNG00015000017	ENSMMNG00015000029	ENSMMNG00015000040 #18	ENSMMNG00015000084 #20	TP53TG5 (ENSMMNG00015000138) #21	SDC4 (ENSMMNG00015000183) #22	RBPJL (ENSMMNG00015000222) #23	MATN4 (ENSMMNG00015000341) #24	SLPI (ENSMMNG00015000429) #25	ENSMMNG00015000448 #28	ENSMMNG00015000459	KCNS1 (ENSMMNG00015000479) #30	STK4 (ENSMMNG00015000516) #31	TOMM34 (ENSMMNG00015000551) #32	PABPC1L (ENSMMNG00015000580) #33	YWHAB (ENSMMNG00015000635) #34	RIMS4 (ENSMMNG00015000679) #35	KCNK15 (ENSMMNG00015000701) #36	CCN5 (ENSMMNG00015000721) #37	ADA (ENSMMNG00015000760)	PKIG (ENSMMNG00015000796)
Vaquita	MODERN SPECIES	6	ACOT8 (ENSPSNG00000014945)	SNX21 (ENSPSNG00000015039) #7	TNNC2 (ENSPSNG00000015194) #8	UBE2C (ENSPSNG00000015424) #9	DNTTIP1 (ENSPSNG00000015631) #10	ENSPSNG00000015756 #11	WFDC2 (ENSPSNG00000015968) #17	ENSPSNG00000016039	ENSPSNG00000016144	ENSPSNG00000016204	ENSPSNG00000016240 #18	PIGT (ENSPSNG00000016693) #19	DBNDD2 (ENSPSNG00000018302) #20	TP53TG5 (ENSPSNG00000018337) #21	SYS1 (ENSPSNG00000018402)	SDC4 (ENSPSNG00000018486) #22	RBPJL (ENSPSNG00000018538) #23	MATN4 (ENSPSNG00000018933) #24	SLPI (ENSPSNG00000019012) #25	ENSPSNG00000019068	ENSPSNG00000019128 #28	PI3 (ENSPSNG00000019153)	KCNS1 (ENSPSNG00000019186) #30	STK4 (ENSPSNG00000019249) #31	TOMM34 (ENSPSNG00000019355) #32	PABPC1L (ENSPSNG00000019442) #33	YWHAB (ENSPSNG00000019638) #34	RIMS4 (ENSPSNG00000019738) #35	KCNK15 (ENSPSNG00000019814) #36	CCN5 (ENSPSNG00000019871) #37	ADA (ENSPSNG00000019951)
Dolphin	MODERN SPECIES	150												PIGT (ENSTTRG00000013813) #19	ENSTTRG00000013812 #20	ENSTTRG00000013811 #21	SYS1 (ENSTTRG00000013810)	SDC4 (ENSTTRG00000013809) #22	RBPJL (ENSTTRG00000013806) #23	MATN4 (ENSTTRG00000013804) #24
Sperm whale	MODERN SPECIES	261														ENSPCTG00005021355 #21	ENSPCTG00005021401	SDC4 (ENSPCTG00005021443) #22	RBPJL (ENSPCTG00005021484) #23	MATN4 (ENSPCTG00005021566) #24
Blue whale	MODERN SPECIES	6	ENSBMSG00010014598 #13	ENSBMSG00010014633 #14	EPPIN (ENSBMSG00010014676) #15	ENSBMSG00010014705 #16	WFDC2 (ENSBMSG00010014742) #17	PIGT (ENSBMSG00010014865) #19	ENSBMSG00010015214	ENSBMSG00010015238	ENSBMSG00010015281	ENSBMSG00010015311	ENSBMSG00010015352 #18	ENSBMSG00010015374	ENSBMSG00010015402 #20	TP53TG5 (ENSBMSG00010015429) #21	SYS1 (ENSBMSG00010015473)	SDC4 (ENSBMSG00010015518) #22	RBPJL (ENSBMSG00010015548) #23	MATN4 (ENSBMSG00010015749) #24	SLPI (ENSBMSG00010016262) #25	ENSBMSG00010016298	ENSBMSG00010016332 #28	ENSBMSG00010016348	WFDC5 (ENSBMSG00010016363) #29	KCNS1 (ENSBMSG00010016379) #30	STK4 (ENSBMSG00010016423) #31	TOMM34 (ENSBMSG00010016476) #32	PABPC1L (ENSBMSG00010016524) #33	YWHAB (ENSBMSG00010016643) #34	ENSBMSG00010016679	ENSBMSG00010016718 #35	KCNK15 (ENSBMSG00010016788) #36
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890.a	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000017962	ENSCHYG00000017883	ENSCHYG00000017834 #18	ENSCHYG00000017794	ENSCHYG00000017706	ENSCHYG00000017650	ENSCHYG00000017534	ENSCHYG00000017429	ENSCHYG00000017164	ENSCHYG00000017130	PIGT (ENSCHYG00000016722) #19	DBNDD2 (ENSCHYG00000016669) #20	ENSCHYG00000016609 #21	ENSCHYG00000016524	ENSCHYG00000016475	SDC4 (ENSCHYG00000016415) #22	RBPJL (ENSCHYG00000016031) #23	MATN4 (ENSCHYG00000015128) #24	SLPI (ENSCHYG00000014988) #25	ENSCHYG00000014941	ENSCHYG00000014887 #28	KCNS1 (ENSCHYG00000014860) #30	STK4 (ENSCHYG00000014698) #31	TOMM34 (ENSCHYG00000014616) #32	PABPC1L (ENSCHYG00000014358) #33	YWHAB (ENSCHYG00000014260) #34	RIMS4 (ENSCHYG00000014187) #35	KCNK15 (ENSCHYG00000014152) #36	CCN5 (ENSCHYG00000014072) #37	ADA (ENSCHYG00000013810)	ENSCHYG00000025720
Percora_a	ANCESTRAL SPECIES	10	ENSGT01010000222890.a	ENSGT01100000263611.a #18	ENSGT01080000257993	ENSGT01100000264024	ENSGT01100000263611.b #18	ENSGT01030000234995.B	ENSGT01030000234995.C	ENSGT00970000193472.b.a.a	ENSGT00970000193472.b.a.b.a.a	ENSGT01030000234995.D.b	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT01010000222890.a	ENSGT01100000263611.a #18	ENSGT01080000257993	ENSGT01100000264024	ENSGT01100000263611.b #18	ENSGT01030000234995.B	ENSGT01030000234995.D.a	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218.c	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Bovinae	ANCESTRAL SPECIES	23	ENSGT01080000257993	ENSGT01100000264024	ENSGT01100000263611.b #18	ENSGT01030000234995.B	ENSGT01030000234995.C	ENSGT00970000193472.b.a.a	ENSGT00970000193472.a.b	ENSGT01030000234995.D.b	ENSGT00920000150779	ENSGT01080000258243	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00390000017491.t.u.s.a	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218.c	ENSGT00530000064218.d.b	ENSGT00530000064218.d.a.b	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Bos	ANCESTRAL SPECIES	24	ENSGT01100000263611.b #18	ENSGT01030000234995.B	ENSGT01030000234995.C	ENSGT00970000193472.b.a.a	ENSGT00970000193472.a.a	ENSGT00970000193472.b.b	ENSGT00970000193472.a.b.a	ENSGT01030000234995.D.b	ENSGT00920000150779	ENSGT01080000258243	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00390000017491.t.u.s.a	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218.c	ENSGT00530000064218.d.b	ENSGT00530000064218.d.a.b	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Bos_b	ANCESTRAL SPECIES	26	ENSGT01100000263611.b #18	ENSGT01030000234995.B	ENSGT01030000234995.C	ENSGT00970000193472.b.a.a	ENSGT00970000193472.a.a	ENSGT00970000193472.b.b	ENSGT00970000193472.a.b.a	ENSGT01030000234995.D.b	ENSGT00920000150779	ENSGT01080000258243	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00390000017491.t.u.s.a	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218.c	ENSGT00530000064218.d.b	ENSGT00530000064218.d.a.b	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Cow	MODERN SPECIES	4	ENSBTAG00000049782 #18	ENSBTAG00000053661	ENSBTAG00000045630	TKDP2 (ENSBTAG00000006096)	TKDP4 (ENSBTAG00000013950)	ENSBTAG00000046704	ENSBTAG00000049036	TKDP1 (ENSBTAG00000018122)	ENSBTAG00000054274	ENSBTAG00000046614	SPINT3 (ENSBTAG00000016127)	PIGT (ENSBTAG00000016122) #19	DBNDD2 (ENSBTAG00000005186) #20	TP53TG5 (ENSBTAG00000005184) #21	SYS1 (ENSBTAG00000005181)	SDC4 (ENSBTAG00000015127) #22	RBPJL (ENSBTAG00000011283) #23	MATN4 (ENSBTAG00000011279) #24	ENSBTAG00000037925	SLPI (ENSBTAG00000004148) #25	ENSBTAG00000014329	WFDC15B (ENSBTAG00000051666) #28	PI3 (ENSBTAG00000039028)	ENSBTAG00000046375	ENSBTAG00000051099	ENSBTAG00000039446	ENSBTAG00000020813	WFDC5 (ENSBTAG00000030624) #29	KCNS1 (ENSBTAG00000008870) #30	STK4 (ENSBTAG00000003257) #31	TOMM34 (ENSBTAG00000003256) #32
Hybrid Bos Indicus	MODERN SPECIES	4	ENSBIXG00005016363 #18	ENSBIXG00005016342	ENSBIXG00005000076	ENSBIXG00005016277	ENSBIXG00005016261	ENSBIXG00005016224	ENSBIXG00005016194	ENSBIXG00005016180	ENSBIXG00005016170	ENSBIXG00005016164	ENSBIXG00005016139	PIGT (ENSBIXG00005016103) #19	ENSBIXG00005015762 #20	SYS1 (ENSBIXG00005015706)	ENSBIXG00005015595 #21	SDC4 (ENSBIXG00005015576) #22	RBPJL (ENSBIXG00005002337) #23	MATN4 (ENSBIXG00005015448) #24	ENSBIXG00005015231	ENSBIXG00005015190	ENSBIXG00005015180 #28	ENSBIXG00005015111	ENSBIXG00005015150	WFDC5 (ENSBIXG00005015106) #29	KCNS1 (ENSBIXG00005015095) #30	STK4 (ENSBIXG00005015075) #31	TOMM34 (ENSBIXG00005015011) #32	PABPC1L (ENSBIXG00005014978) #33	YWHAB (ENSBIXG00005014873) #34	ENSBIXG00005014846	RIMS4 (ENSBIXG00005002134) #35
Bos_a	ANCESTRAL SPECIES	7	ENSGT01100000264024	ENSGT01100000263611.b #18	ENSGT01030000234995.B	ENSGT01030000234995.C	ENSGT00970000193472.b.a.a	ENSGT00970000193472.a.a	ENSGT00970000193472.b.b	ENSGT00970000193472.a.b.a	ENSGT01030000234995.D.b	ENSGT01080000258243	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00390000017491.t.u.s.a	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218.c	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36
Wild yak	MODERN SPECIES	579						ENSBMUG00000000495	ENSBMUG00000000239	ENSBMUG00000000230	ENSBMUG00000000212	ENSBMUG00000000177	ENSBMUG00000000128	PIGT (ENSBMUG00000000109) #19	DBNDD2 (ENSBMUG00000021263) #20	ENSBMUG00000021240 #21	SYS1 (ENSBMUG00000021230)	SDC4 (ENSBMUG00000021220) #22	RBPJL (ENSBMUG00000021199) #23	MATN4 (ENSBMUG00000021182) #24	SLPI (ENSBMUG00000021130) #25
Domestic yak	MODERN SPECIES	3	ENSBGRG00000016561	ENSBGRG00000016383	ENSBGRG00000016316 #18	ENSBGRG00000016231	ENSBGRG00000016081	ENSBGRG00000015890	ENSBGRG00000015827	ENSBGRG00000014959	ENSBGRG00000014907	ENSBGRG00000014847	ENSBGRG00000014729	ENSBGRG00000014678	ENSBGRG00000014658	PIGT (ENSBGRG00000012664) #19	ENSBGRG00000012498 #21	SDC4 (ENSBGRG00000012363) #22	RBPJL (ENSBGRG00000011972) #23	MATN4 (ENSBGRG00000011441) #24	ENSBGRG00000011339	SLPI (ENSBGRG00000011283) #25	ENSBGRG00000011147	ENSBGRG00000011098 #28	ENSBGRG00000010790	WFDC5 (ENSBGRG00000010674) #29	KCNS1 (ENSBGRG00000010613) #30	STK4 (ENSBGRG00000015183) #31	TOMM34 (ENSBGRG00000015065) #32	PABPC1L (ENSBGRG00000014538) #33	ENSBGRG00000014421 ##34	RIMS4 (ENSBGRG00000014364) #35	KCNK15 (ENSBGRG00000014337) #36
American bison	MODERN SPECIES	2165	ENSBBBG00000019968	ENSBBBG00000019981	ENSBBBG00000019992	ENSBBBG00000005408	ENSBBBG00000008390	ENSBBBG00000020037	ENSBBBG00000020048	ENSBBBG00000005100	ENSBBBG00000005087	ENSBBBG00000008611	ENSBBBG00000020055	PIGT (ENSBBBG00000020278) #19	DBNDD2 (ENSBBBG00000020302) #20	ENSBBBG00000020342 #21	SYS1 (ENSBBBG00000005506)	SDC4 (ENSBBBG00000020357) #22	RBPJL (ENSBBBG00000020408) #23	MATN4 (ENSBBBG00000000530) #24	ENSBBBG00000020420	SLPI (ENSBBBG00000005524) #25	ENSBBBG00000020433
Caprinae	ANCESTRAL SPECIES	21	ENSGT01100000264024	ENSGT01030000234995.B.c	ENSGT01030000234995.C	ENSGT00970000193472.b.a.a.b	ENSGT00970000193472.b.a.a.a	ENSGT00970000193472.b.a.b.a.a	ENSGT01030000234995.A	ENSGT01030000234995.D.b	ENSGT01080000258243	ENSGT00940000164331	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218.c	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020014610 #18	ENSOARG00020014564	ENSOARG00020014534	ENSOARG00020014485	ENSOARG00020014358	ENSOARG00020014313	TKDP1 (ENSOARG00020014222)	ENSOARG00020014180	ENSOARG00020014112	ENSOARG00020014088	ENSOARG00020014041	ENSOARG00020014012	PIGT (ENSOARG00020013290) #19	DBNDD2 (ENSOARG00020013198) #20	ENSOARG00020013147 #21	SDC4 (ENSOARG00020012987) #22	RBPJL (ENSOARG00020012624) #23	MATN4 (ENSOARG00020012415) #24	SLPI (ENSOARG00020012315) #25	ENSOARG00020012272	ENSOARG00020012213	ENSOARG00020012184 #28	PI3 (ENSOARG00020012128)	WFDC5 (ENSOARG00020012081) #29	KCNS1 (ENSOARG00020012034) #30	STK4 (ENSOARG00020011685) #31	TOMM34 (ENSOARG00020011604) #32	PABPC1L (ENSOARG00020011526) #33	YWHAB (ENSOARG00020011459) #34	KCNK15 (ENSOARG00020011343) #36	CCN5 (ENSOARG00020011297) #37
Goat	MODERN SPECIES	4	ENSCHIG00000010822	ENSCHIG00000025340	ENSCHIG00000018837	ENSCHIG00000024303	ENSCHIG00000006706	ENSCHIG00000024952	ENSCHIG00000016875	ENSCHIG00000025893	ENSCHIG00000027110	ENSCHIG00000023046	ENSCHIG00000011519	PIGT (ENSCHIG00000021336) #19	DBNDD2 (ENSCHIG00000017333) #20	TP53TG5 (ENSCHIG00000024772) #21	SYS1 (ENSCHIG00000020894)	SDC4 (ENSCHIG00000018365) #22	RBPJL (ENSCHIG00000011922) #23	MATN4 (ENSCHIG00000016290) #24	ENSCHIG00000012213 #25	ENSCHIG00000019424	ENSCHIG00000013961	WFDC5 (ENSCHIG00000003245) #29	KCNS1 (ENSCHIG00000017367) #30	STK4 (ENSCHIG00000003232) #31	TOMM34 (ENSCHIG00000017546) #32	PABPC1L (ENSCHIG00000025759) #33	YWHAB (ENSCHIG00000015771) #34	RIMS4 (ENSCHIG00000015639) #35	KCNK15 (ENSCHIG00000026668) #36	CCN5 (ENSCHIG00000020403) #37	ADA (ENSCHIG00000027058)
Siberian musk deer	MODERN SPECIES	1198										ENSMMSG00000016589	ENSMMSG00000016603	PIGT (ENSMMSG00000016707) #19	DBNDD2 (ENSMMSG00000017363) #20	ENSMMSG00000017390 #21	SYS1 (ENSMMSG00000017409)	SDC4 (ENSMMSG00000017471) #22	RBPJL (ENSMMSG00000017505) #23	MATN4 (ENSMMSG00000017682) #24	SLPI (ENSMMSG00000018034) #25	ENSMMSG00000018060	ENSMMSG00000018079 #28	ENSMMSG00000018108	WFDC5 (ENSMMSG00000018142) #29	KCNS1 (ENSMMSG00000018164) #30	STK4 (ENSMMSG00000018196) #31	TOMM34 (ENSMMSG00000018270) #32	PABPC1L (ENSMMSG00000018315) #33	YWHAB (ENSMMSG00000018362) #34	RIMS4 (ENSMMSG00000018389) #35	KCNK15 (ENSMMSG00000018432) #36	CCN5 (ENSMMSG00000018462) #37
Camelidae	ANCESTRAL SPECIES	10	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00960000187009	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01010000222890	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Arabian camel	MODERN SPECIES	10	WFDC10A (ENSCDRG00005018546)	WFDC9 (ENSCDRG00005018518) #13	ENSCDRG00005018498	WFDC8 (ENSCDRG00005018465) #14	EPPIN (ENSCDRG00005018436) #15	ENSCDRG00005018361 #16	SPINT3 (ENSCDRG00005018335)	WFDC2 (ENSCDRG00005018307) #17	ENSCDRG00005018287	ENSCDRG00005018278 #18	ENSCDRG00005018253	PIGT (ENSCDRG00005015212) #19	DBNDD2 (ENSCDRG00005015115) #20	TP53TG5 (ENSCDRG00005015063) #21	SYS1 (ENSCDRG00005015013)	SDC4 (ENSCDRG00005014962) #22	RBPJL (ENSCDRG00005014489) #23	MATN4 (ENSCDRG00005014295) #24	SLPI (ENSCDRG00005014259) #25	ENSCDRG00005014242	ENSCDRG00005014229 #28	ENSCDRG00005014211	WFDC5 (ENSCDRG00005014171) #29	STK4 (ENSCDRG00005013973) #31	TOMM34 (ENSCDRG00005013913) #32	PABPC1L (ENSCDRG00005013848) #33	YWHAB (ENSCDRG00005013807) #34	RIMS4 (ENSCDRG00005013755) #35	KCNK15 (ENSCDRG00005013714) #36	CCN5 (ENSCDRG00005013635) #37	ADA (ENSCDRG00005013531)
Alpaca	MODERN SPECIES	1728														PIGT (ENSVPAG00000005034) #19	TP53TG5 (ENSVPAG00000005033) #21	SDC4 (ENSVPAG00000005032) #22	ENSVPAG00000005031 #23	ENSVPAG00000005030 #24	SLPI (ENSVPAG00000005029) #25	ENSVPAG00000005028	ENSVPAG00000005027	ENSVPAG00000005026 #30	STK4 (ENSVPAG00000005025) #31	ENSVPAG00000005024 #32	YWHAB (ENSVPAG00000005023) #34
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Carnivora	ANCESTRAL SPECIES	20	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Caniformia	ANCESTRAL SPECIES		ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Caniformia_b	ANCESTRAL SPECIES		ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Ursidae	ANCESTRAL SPECIES	14	ENSGT00390000012268	ENSGT00440000034744	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Ursus	ANCESTRAL SPECIES	1	ENSGT00440000034744	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00950000183087.A.a.a.a.a	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
American black bear	MODERN SPECIES	337														ENSUAMG00000017705 #21	SYS1 (ENSUAMG00000017704)	SDC4 (ENSUAMG00000017703) #22	RBPJL (ENSUAMG00000017699) #23	ENSUAMG00000017697 #24	SLPI (ENSUAMG00000017696) #25	ENSUAMG00000017694	ENSUAMG00000017693 #28	PI3 (ENSUAMG00000017692)	WFDC5 (ENSUAMG00000017690) #29	KCNS1 (ENSUAMG00000017686) #30	STK4 (ENSUAMG00000017684) #31	TOMM34 (ENSUAMG00000017683) #32	PABPC1L (ENSUAMG00000017682) #33	YWHAB (ENSUAMG00000017681) #34	RIMS4 (ENSUAMG00000017680) #35	KCNK15 (ENSUAMG00000017679) #36	CCN5 (ENSUAMG00000017678) #37
Polar bear	MODERN SPECIES	211	ENSUMAG00000025165	WFDC10B (ENSUMAG00000025166)	WFDC11 (ENSUMAG00000025167)	WFDC9 (ENSUMAG00000025168) #13	WFDC10A (ENSUMAG00000025169)	WFDC8 (ENSUMAG00000025170) #14	EPPIN (ENSUMAG00000025171) #15	ENSUMAG00000025172 #16	ENSUMAG00000025173	ENSUMAG00000025174 #17	ENSUMAG00000025175	PIGT (ENSUMAG00000025184) #19	DBNDD2 (ENSUMAG00000025296) #20	ENSUMAG00000025298 #21	ENSUMAG00000025300	SDC4 (ENSUMAG00000025301) #22	RBPJL (ENSUMAG00000025305) #23	MATN4 (ENSUMAG00000025310) #24	SLPI (ENSUMAG00000025315) #25	ENSUMAG00000025318	PI3 (ENSUMAG00000025322)	WFDC5 (ENSUMAG00000025324) #29	STK4 (ENSUMAG00000025353) #31	TOMM34 (ENSUMAG00000025434) #32	ENSUMAG00000025435	PABPC1L (ENSUMAG00000025436) #33	YWHAB (ENSUMAG00000025437) #34	RIMS4 (ENSUMAG00000025438) #35	ENSUMAG00000025439 #37	ADA (ENSUMAG00000025440)	PKIG (ENSUMAG00000025442)
Giant Panda	MODERN SPECIES	4	DNTTIP1 (ENSAMEG00000012514) #10	WFDC3 (ENSAMEG00000012504) #11	SPINT4 (ENSAMEG00000012503) #12	WFDC13 (ENSAMEG00000012500)	ENSAMEG00000012494	ENSAMEG00000018938 #13	ENSAMEG00000026937 #15	ENSAMEG00000025216 #16	ENSAMEG00000004313	ENSAMEG00000030843	WFDC2 (ENSAMEG00000028485) #17	PIGT (ENSAMEG00000004281) #19	DBNDD2 (ENSAMEG00000004265) #20	TP53TG5 (ENSAMEG00000004260) #21	SYS1 (ENSAMEG00000024134)	SDC4 (ENSAMEG00000004244) #22	RBPJL (ENSAMEG00000004221) #23	MATN4 (ENSAMEG00000004203) #24	SLPI (ENSAMEG00000004196) #25	ENSAMEG00000004193	ENSAMEG00000025370 #28	PI3 (ENSAMEG00000027638)	WFDC5 (ENSAMEG00000004189) #29	ENSAMEG00000004183 #30	STK4 (ENSAMEG00000004150) #31	TOMM34 (ENSAMEG00000004125) #32	PABPC1L (ENSAMEG00000004099) #33	YWHAB (ENSAMEG00000004088) #34	RIMS4 (ENSAMEG00000004075) #35	ENSAMEG00000029879	KCNK15 (ENSAMEG00000004071) #36
Mustelinae	ANCESTRAL SPECIES	11	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Ferret	MODERN SPECIES	180	WFDC3 (ENSMPUG00000017621) #11	ENSMPUG00000017622	WFDC10B (ENSMPUG00000017623)	WFDC9 (ENSMPUG00000017624) #13	ENSMPUG00000017625	ENSMPUG00000017626	WFDC8 (ENSMPUG00000017627) #14	EPPIN (ENSMPUG00000017628) #15	ENSMPUG00000017629 #16	WFDC2 (ENSMPUG00000017630) #17	ENSMPUG00000017631	PIGT (ENSMPUG00000017632) #19	DBNDD2 (ENSMPUG00000017633) #20	TP53TG5 (ENSMPUG00000017634) #21	SYS1 (ENSMPUG00000017635)	SDC4 (ENSMPUG00000017636) #22	RBPJL (ENSMPUG00000017637) #23	MATN4 (ENSMPUG00000017638) #24	SLPI (ENSMPUG00000017639) #25	ENSMPUG00000017640	PI3 (ENSMPUG00000017641)	WFDC5 (ENSMPUG00000017642) #29	KCNS1 (ENSMPUG00000017643) #30	STK4 (ENSMPUG00000017644) #31	TOMM34 (ENSMPUG00000017645) #32	PABPC1L (ENSMPUG00000017646) #33	YWHAB (ENSMPUG00000017660) #34	RIMS4 (ENSMPUG00000017661) #35	KCNK15 (ENSMPUG00000017662) #36	CCN5 (ENSMPUG00000017663) #37	ADA (ENSMPUG00000017664)
American mink	MODERN SPECIES	7	WFDC11 (ENSNVIG00000010345)	WFDC9 (ENSNVIG00000010359) #13	ENSNVIG00000010370	WFDC10A (ENSNVIG00000010378)	WFDC8 (ENSNVIG00000010382) #14	EPPIN (ENSNVIG00000010399) #15	ENSNVIG00000010412 #16	ENSNVIG00000010415	ENSNVIG00000010424 #16	WFDC2 (ENSNVIG00000010427) #17	ENSNVIG00000010450	PIGT (ENSNVIG00000010506) #19	ENSNVIG00000010679 #20	TP53TG5 (ENSNVIG00000010705) #21	SYS1 (ENSNVIG00000010742)	SDC4 (ENSNVIG00000010754) #22	RBPJL (ENSNVIG00000010764) #23	MATN4 (ENSNVIG00000010816) #24	SLPI (ENSNVIG00000010853) #25	ENSNVIG00000010861	ENSNVIG00000010873 #28	WFDC5 (ENSNVIG00000010883) #29	ELAF (ENSNVIG00000010904)	KCNS1 (ENSNVIG00000010907) #30	STK4 (ENSNVIG00000010914) #31	TOMM34 (ENSNVIG00000010955) #32	PABPC1L (ENSNVIG00000010962) #33	YWHAB (ENSNVIG00000011016) #34	RIMS4 (ENSNVIG00000011024) #35	KCNK3 (ENSNVIG00000011039)	CIB4 (ENSNVIG00000011050)
Canidae	ANCESTRAL SPECIES	19					ENSGT00940000166033.b	ENSGT00940000166033.a.a	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000166033.a.a.b	ENSGT00940000166033.b	ENSGT00940000166033.a.a.a	ENSGT00940000153201.j.m.a.e.a.a.b	ENSGT00940000162037 #14	ENSGT00940000156753.d #16	ENSGT00940000168491	ENSGT00940000164331	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Dog	MODERN SPECIES	16	ENSCAFG00845015359 #13	ENSCAFG00845015340	ENSCAFG00845015317	ENSCAFG00845015293	CE10 (ENSCAFG00845015270)	ENSCAFG00845015232	ENSCAFG00845015194 #14	ENSCAFG00845015166 #16	WFDC2 (ENSCAFG00845015133)	SPINT3 (ENSCAFG00845015058)	ENSCAFG00845015024	PIGT (ENSCAFG00845014772) #19	TP53TG5 (ENSCAFG00845014598) #21	DBNDD2 (ENSCAFG00845014577) #20	SYS1 (ENSCAFG00845014556)	SDC4 (ENSCAFG00845014521) #22	RBPJL (ENSCAFG00845014479) #23	MATN4 (ENSCAFG00845014439) #24	SLPI (ENSCAFG00845014398) #25	ENSCAFG00845014374	PI3 (ENSCAFG00845014356)	WFDC5 (ENSCAFG00845014342) #29	KCNS1 (ENSCAFG00845014326) #30	STK4 (ENSCAFG00845014272) #31	TOMM34 (ENSCAFG00845014214) #32	PABPC1L (ENSCAFG00845014122) #33	RIMS4 (ENSCAFG00845014034) #35	KCNK15 (ENSCAFG00845014007) #36	CCN5 (ENSCAFG00845013975) #37	ADA (ENSCAFG00845013933)	TTPAL (ENSCAFG00845013856)
Dingo	MODERN SPECIES	343	WFDC10B (ENSCAFG00020013997)	WFDC11 (ENSCAFG00020013991)	ENSCAFG00020013988 #13	ENSCAFG00020013964	ENSCAFG00020013961	ENSCAFG00020013958	ENSCAFG00020013951	WFDC8 (ENSCAFG00020013934) #14	ENSCAFG00020013924 #16	ENSCAFG00020013918	ENSCAFG00020013913	PIGT (ENSCAFG00020013909) #19	TP53TG5 (ENSCAFG00020013906) #21	DBNDD2 (ENSCAFG00020013904) #20	SYS1 (ENSCAFG00020013899)	SDC4 (ENSCAFG00020013897) #22	RBPJL (ENSCAFG00020013876) #23	MATN4 (ENSCAFG00020013861) #24	SLPI (ENSCAFG00020013855) #25	ENSCAFG00020013850	ENSCAFG00020013849 #28	PI3 (ENSCAFG00020013847)	ENSCAFG00020013843 #29	KCNS1 (ENSCAFG00020013842) #30	STK4 (ENSCAFG00020013837) #31	TOMM34 (ENSCAFG00020013833) #32	PABPC1L (ENSCAFG00020013828) #33	YWHAB (ENSCAFG00020013827) #34	RIMS4 (ENSCAFG00020013822) #35	KCNK15 (ENSCAFG00020013809) #36	CCN5 (ENSCAFG00020013807) #37
Red fox	MODERN SPECIES	28	AP4E1 (ENSVVUG00000018715)	TNFAIP8L3 (ENSVVUG00000018736)	CYP19A1 (ENSVVUG00000018740)	ENSVVUG00000018741	ENSVVUG00000018744	ENSVVUG00000018747	WFDC8 (ENSVVUG00000018753) #14	ENSVVUG00000018776 #15	ENSVVUG00000018783 #16	WFDC2 (ENSVVUG00000018792) #17	SPINT3 (ENSVVUG00000018799)	PIGT (ENSVVUG00000018801) #19	DBNDD2 (ENSVVUG00000018809) #20	TP53TG5 (ENSVVUG00000018813) #21	SYS1 (ENSVVUG00000018817)	SDC4 (ENSVVUG00000018824) #22	RBPJL (ENSVVUG00000018832) #23	MATN4 (ENSVVUG00000018850) #24	SLPI (ENSVVUG00000018858) #25	ENSVVUG00000018861	ENSVVUG00000018895 #28	ENSVVUG00000018900 #29	PI3 (ENSVVUG00000018905)	KCNS1 (ENSVVUG00000018906) #30	STK4 (ENSVVUG00000018909) #31	TOMM34 (ENSVVUG00000018918) #32	PABPC1L (ENSVVUG00000018939) #33	YWHAB (ENSVVUG00000019085) #34	RIMS4 (ENSVVUG00000019092) #35	ENSVVUG00000019097 #37	ADA (ENSVVUG00000019108)
Felidae	ANCESTRAL SPECIES	3	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Panthera	ANCESTRAL SPECIES	2	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Tiger	MODERN SPECIES	106	DNTTIP1 (ENSPTIG00000013099) #10	WFDC3 (ENSPTIG00000011730) #11	SPINT4 (ENSPTIG00000010251) #12	WFDC13 (ENSPTIG00000009856)	WFDC10B (ENSPTIG00000009615)	WFDC11 (ENSPTIG00000007820)	WFDC9 (ENSPTIG00000006686) #13	WFDC8 (ENSPTIG00000006507) #14	EPPIN (ENSPTIG00000005188) #15	WFDC2 (ENSPTIG00000004268) #17	ENSPTIG00000002090	PIGT (ENSPTIG00000015122) #19	DBNDD2 (ENSPTIG00000011399) #20	TP53TG5 (ENSPTIG00000011043) #21	SYS1 (ENSPTIG00000010356)	SDC4 (ENSPTIG00000010033) #22	RBPJL (ENSPTIG00000009327) #23	MATN4 (ENSPTIG00000018650) #24	SLPI (ENSPTIG00000018088) #25	PI3 (ENSPTIG00000017774)	WFDC5 (ENSPTIG00000017183) #29	STK4 (ENSPTIG00000014356) #31	TOMM34 (ENSPTIG00000013642) #32	PABPC1L (ENSPTIG00000006524) #33	YWHAB (ENSPTIG00000005867) #34	RIMS4 (ENSPTIG00000001213) #35	CCN5 (ENSPTIG00000021850) #37	ADA (ENSPTIG00000020943)	PKIG (ENSPTIG00000019303)	SERINC3 (ENSPTIG00000019064)	TTPAL (ENSPTIG00000017912)
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00730000111454 #11	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
leopard	MODERN SPECIES	32	DNTTIP1 (ENSPPRG00000022810) #10	WFDC3 (ENSPPRG00000023111) #11	SPINT4 (ENSPPRG00000023638) #12	WFDC13 (ENSPPRG00000022539)	WFDC10B (ENSPPRG00000020705)	WFDC11 (ENSPPRG00000020459)	WFDC9 (ENSPPRG00000018316) #13	WFDC8 (ENSPPRG00000016847) #14	EPPIN (ENSPPRG00000014888) #15	ENSPPRG00000013864	ENSPPRG00000008771	PIGT (ENSPPRG00000012910) #19	DBNDD2 (ENSPPRG00000007608) #20	TP53TG5 (ENSPPRG00000005986) #21	SYS1 (ENSPPRG00000005123)	SDC4 (ENSPPRG00000004481) #22	RBPJL (ENSPPRG00000004271) #23	MATN4 (ENSPPRG00000002358) #24	SLPI (ENSPPRG00000000698) #25	PI3 (ENSPPRG00000000238)	WFDC5 (ENSPPRG00000022678) #29	KCNS1 (ENSPPRG00000023008) #30	STK4 (ENSPPRG00000023623) #31	TOMM34 (ENSPPRG00000021071) #32	ENSPPRG00000020242 #33	ENSPPRG00000019327 #33	YWHAB (ENSPPRG00000015113) #34	RIMS4 (ENSPPRG00000014748) #35	KCNK15 (ENSPPRG00000013716) #36	CCN5 (ENSPPRG00000013477) #37	ADA (ENSPPRG00000013211)
lion	MODERN SPECIES	3	ENSPLOG00000000440 #11	ENSPLOG00000000426	SPINT4 (ENSPLOG00000000415) #12	WFDC13 (ENSPLOG00000000399)	WFDC10B (ENSPLOG00000000385)	WFDC11 (ENSPLOG00000000368)	WFDC9 (ENSPLOG00000000353) #13	WFDC8 (ENSPLOG00000000340) #14	ENSPLOG00000000324 #15	WFDC2 (ENSPLOG00000000300) #17	ENSPLOG00000000276 #16	PIGT (ENSPLOG00000000212) #19	TP53TG5 (ENSPLOG00000000157) #21	DBNDD2 (ENSPLOG00000000141) #20	SYS1 (ENSPLOG00000000107)	SDC4 (ENSPLOG00000004449) #22	RBPJL (ENSPLOG00000004435) #23	MATN4 (ENSPLOG00000004401) #24	SLPI (ENSPLOG00000004378) #25	ENSPLOG00000004364	ENSPLOG00000004342 #28	PI3 (ENSPLOG00000004339)	WFDC5 (ENSPLOG00000004328) #29	KCNS1 (ENSPLOG00000004316) #30	STK4 (ENSPLOG00000004302) #31	TOMM34 (ENSPLOG00000004286) #32	PABPC1L (ENSPLOG00000004260) #33	YWHAB (ENSPLOG00000004243) #34	RIMS4 (ENSPLOG00000004234) #35	KCNK15 (ENSPLOG00000004228) #36	CCN5 (ENSPLOG00000004220) #37
Cat	MODERN SPECIES	2	SPINT4 (ENSFCAG00000049152) #12	WFDC13 (ENSFCAG00000041034)	WFDC10B (ENSFCAG00000028513)	WFDC11 (ENSFCAG00000046607)	WFDC9 (ENSFCAG00000044444) #13	ENSFCAG00000052150	WFDC8 (ENSFCAG00000009822) #14	ENSFCAG00000009821 #15	ENSFCAG00000053077 #16	WFDC2 (ENSFCAG00000040756) #17	ENSFCAG00000031762	PIGT (ENSFCAG00000026095) #19	DBNDD2 (ENSFCAG00000039111) #20	TP53TG5 (ENSFCAG00000009815) #21	SYS1 (ENSFCAG00000038429)	SDC4 (ENSFCAG00000022046) #22	RBPJL (ENSFCAG00000009812) #23	MATN4 (ENSFCAG00000009811) #24	SLPI (ENSFCAG00000009810) #25	ENSFCAG00000051145	ENSFCAG00000047805 #28	PI3 (ENSFCAG00000032979)	WFDC5 (ENSFCAG00000036344) #29	KCNS1 (ENSFCAG00000011694) #30	STK4 (ENSFCAG00000027735) #31	TOMM34 (ENSFCAG00000010096) #32	PABPC1L (ENSFCAG00000011692) #33	YWHAB (ENSFCAG00000011690) #34	RIMS4 (ENSFCAG00000041558) #35	KCNK15 (ENSFCAG00000043965) #36	CCN5 (ENSFCAG00000002476) #37
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01100000263611 #18	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00940000163688	ENSGT00730000111410 #17	ENSGT01100000263611 #18	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Microbat	MODERN SPECIES	1027	SNX21 (ENSMLUG00000000253) #7	ENSMLUG00000005510 #8	ENSMLUG00000000248 #8	UBE2C (ENSMLUG00000006715) #9	ENSMLUG00000025830 #10	ENSMLUG00000006704 #11	SPINT4 (ENSMLUG00000004326) #12	WFDC11 (ENSMLUG00000029537)	WFDC8 (ENSMLUG00000005950) #14	ENSMLUG00000005945 #15	ENSMLUG00000005941 #17	PIGT (ENSMLUG00000005929) #19	DBNDD2 (ENSMLUG00000005919) #20	TP53TG5 (ENSMLUG00000005911) #21	SYS1 (ENSMLUG00000005907)	SDC4 (ENSMLUG00000027652) #22	RBPJL (ENSMLUG00000005893) #23	MATN4 (ENSMLUG00000005886) #24	ENSMLUG00000027708	ENSMLUG00000029757 #28	WFDC5 (ENSMLUG00000011821) #29	KCNS1 (ENSMLUG00000011814) #30	STK4 (ENSMLUG00000011799) #31	TOMM34 (ENSMLUG00000006338) #32	PABPC1L (ENSMLUG00000006324) #33	YWHAB (ENSMLUG00000006319) #34	RIMS4 (ENSMLUG00000016193) #35	KCNK15 (ENSMLUG00000016190) #36	CCN5 (ENSMLUG00000016186) #37	ADA (ENSMLUG00000016178)	PKIG (ENSMLUG00000025903)
Greater horseshoe bat	MODERN SPECIES	15	DNTTIP1 (ENSRFEG00010018874) #10	WFDC3 (ENSRFEG00010018918) #11	SPINT4 (ENSRFEG00010018998) #12	WFDC13 (ENSRFEG00010019025)	WFDC10A (ENSRFEG00010019058)	WFDC9 (ENSRFEG00010019089) #13	WFDC8 (ENSRFEG00010019118) #14	EPPIN (ENSRFEG00010019167) #15	ENSRFEG00010019244 #16	ENSRFEG00010019291	WFDC2 (ENSRFEG00010019325) #17	PIGT (ENSRFEG00010019456) #19	ENSRFEG00010019975 #18	DBNDD2 (ENSRFEG00010019983) #20	SYS1 (ENSRFEG00010020080)	SDC4 (ENSRFEG00010020108) #22	RBPJL (ENSRFEG00010020135) #23	MATN4 (ENSRFEG00010020347) #24	ENSRFEG00010020517	ENSRFEG00010020563 #28	PI3 (ENSRFEG00010020583)	WFDC5 (ENSRFEG00010020596) #29	KCNS1 (ENSRFEG00010020617) #30	STK4 (ENSRFEG00010020658) #31	ENSRFEG00010020711 #32	PABPC1L (ENSRFEG00010020745) #33	YWHAB (ENSRFEG00010020781) #34	RIMS4 (ENSRFEG00010005743) #35	KCNK15 (ENSRFEG00010005767) #36	CCN5 (ENSRFEG00010005790) #37	ADA (ENSRFEG00010005851)
Megabat	MODERN SPECIES	309												PIGT (ENSPVAG00000008762) #19	DBNDD2 (ENSPVAG00000008759) #20	TP53TG5 (ENSPVAG00000008757) #21	SYS1 (ENSPVAG00000008755)	SDC4 (ENSPVAG00000008754) #22	RBPJL (ENSPVAG00000008751) #23	MATN4 (ENSPVAG00000008745) #24
Equus	ANCESTRAL SPECIES	8	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00390000012268	ENSGT00940000163115	ENSGT00940000162961 #13	ENSGT00940000163481	ENSGT00940000166033	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00940000156753.d #16	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000165647	ENSGT00390000002529 #28	ENSGT00530000064218	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37
Donkey	MODERN SPECIES	6	ENSEASG00005023381	WFDC11 (ENSEASG00005030432)	WFDC10A (ENSEASG00005028332)	WFDC9 (ENSEASG00005023382) #13	ENSEASG00005037470	WFDC8 (ENSEASG00005023384) #14	EPPIN (ENSEASG00005038447) #15	ENSEASG00005023385 #16	ENSEASG00005023386 #16	WFDC2 (ENSEASG00005023387) #17	ENSEASG00005034405	PIGT (ENSEASG00005023390) #19	ENSEASG00005024214 #21	ENSEASG00005023391 #20	SYS1 (ENSEASG00005023394)	SDC4 (ENSEASG00005023395) #22	RBPJL (ENSEASG00005023396) #23	MATN4 (ENSEASG00005023397) #24	SLPI (ENSEASG00005029589) #25	ENSEASG00005033385	ENSEASG00005023400 #28	PI3 (ENSEASG00005023401)	WFDC5 (ENSEASG00005025639) #29	KCNS1 (ENSEASG00005023403) #30	STK4 (ENSEASG00005023404) #31	TOMM34 (ENSEASG00005023405) #32	PABPC1L (ENSEASG00005023408) #33	YWHAB (ENSEASG00005023409) #34	RIMS4 (ENSEASG00005025946) #35	KCNK15 (ENSEASG00005024599) #36	CCN5 (ENSEASG00005023412) #37
Horse	MODERN SPECIES	14	SPINT4 (ENSECAG00000041473) #12	WFDC13 (ENSECAG00000041370)	WFDC11 (ENSECAG00000040011)	WFDC9 (ENSECAG00000022824) #13	WFDC10A (ENSECAG00000022829)	ENSECAG00000022689	WFDC8 (ENSECAG00000021682) #14	ENSECAG00000029537 #15	ENSECAG00000001476	ENSECAG00000002141	ENSECAG00000054839	PIGT (ENSECAG00000007294) #19	DBNDD2 (ENSECAG00000000442) #20	TP53TG5 (ENSECAG00000023518) #21	SYS1 (ENSECAG00000021199)	SDC4 (ENSECAG00000036088) #22	RBPJL (ENSECAG00000035129) #23	MATN4 (ENSECAG00000017224) #24	SLPI (ENSECAG00000016161) #25	ENSECAG00000014790	PI3 (ENSECAG00000014295)	WFDC5 (ENSECAG00000014041) #29	KCNS1 (ENSECAG00000010290) #30	STK4 (ENSECAG00000021941) #31	TOMM34 (ENSECAG00000020421) #32	PABPC1L (ENSECAG00000022681) #33	YWHAB (ENSECAG00000020397) #34	RIMS4 (ENSECAG00000015253) #35	KCNK15 (ENSECAG00000030952) #36	CCN5 (ENSECAG00000014566) #37	ADA (ENSECAG00000008358)
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00510000047836 #10	ENSGT00730000111454 #11	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00940000163972	ENSGT00940000163115	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00950000184089	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00530000063759.b #7	ENSGT00940000153541.C #8	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00940000163972	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00950000184089	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00530000063759.b #7	ENSGT00940000153541.C #8	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00440000034744	ENSGT00390000004362 #12	ENSGT00940000163972	ENSGT00940000163481	ENSGT00940000162961 #13	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00950000184089	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Elephant	MODERN SPECIES	180	ENSLAFG00000003164 #9	DNTTIP1 (ENSLAFG00000003161) #10	ENSLAFG00000032383 #14	ENSLAFG00000003160	ENSLAFG00000008401 #12	WFDC10B (ENSLAFG00000007741)	WFDC10A (ENSLAFG00000005284)	ENSLAFG00000007745	WFDC9 (ENSLAFG00000005468) #13	ENSLAFG00000025888 #14	EPPIN (ENSLAFG00000015403) #15	PIGT (ENSLAFG00000000786) #19	DBNDD2 (ENSLAFG00000008160) #20	TP53TG5 (ENSLAFG00000018728) #21	SYS1 (ENSLAFG00000008154)	SDC4 (ENSLAFG00000008150) #22	RBPJL (ENSLAFG00000008148) #23	MATN4 (ENSLAFG00000008138) #24	SLPI (ENSLAFG00000010926) #25	ENSLAFG00000018376	ENSLAFG00000021842	WFDC5 (ENSLAFG00000027430) #29	KCNS1 (ENSLAFG00000003564) #30	STK4 (ENSLAFG00000003562) #31	TOMM34 (ENSLAFG00000003560) #32	PABPC1L (ENSLAFG00000003553) #33	YWHAB (ENSLAFG00000029038) #34	RIMS4 (ENSLAFG00000011997) #35	KCNK15 (ENSLAFG00000027600) #36	CCN5 (ENSLAFG00000003023) #37	ADA (ENSLAFG00000003020)
Tenrec	MODERN SPECIES	2267																SDC4 (ENSETEG00000017291) #22
Xenarthra	ANCESTRAL SPECIES	13	ENSGT00930000150941 #9	ENSGT00510000047836 #10	ENSGT00730000111454 #11	ENSGT00390000004362 #12	ENSGT00940000163481	ENSGT00940000163115	ENSGT00940000163972	ENSGT01030000237901	ENSGT00940000162037 #14	ENSGT00940000156753.c #15	ENSGT00730000111410 #17	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00530000064218	ENSGT00940000160096 #30	ENSGT00940000159787 #31
Armadillo	MODERN SPECIES	2704	UBE2C (ENSDNOG00000036387) #9	DNTTIP1 (ENSDNOG00000003085) #10	WFDC3 (ENSDNOG00000003084) #11	ENSDNOG00000015722 #12	ENSDNOG00000039076	ENSDNOG00000018194	ENSDNOG00000033250	ENSDNOG00000011958	WFDC8 (ENSDNOG00000015532) #14	EPPIN (ENSDNOG00000005309) #15	ENSDNOG00000031019 #17	PIGT (ENSDNOG00000038350) #19	DBNDD2 (ENSDNOG00000049269) #20	TP53TG5 (ENSDNOG00000004013) #21	SYS1 (ENSDNOG00000011943)	SDC4 (ENSDNOG00000011932) #22	RBPJL (ENSDNOG00000011919) #23	MATN4 (ENSDNOG00000014948) #24	SLPI (ENSDNOG00000040689) #25	ENSDNOG00000036989	ENSDNOG00000042072	KCNS1 (ENSDNOG00000012849) #30	STK4 (ENSDNOG00000039637) #31	ENSDNOG00000043508
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00940000159904	ENSGT00940000158444	ENSGT00940000158973.b	ENSGT00390000015164	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780	ENSGT00940000158323	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00940000159904	ENSGT00940000158444	ENSGT00940000158973.b	ENSGT00390000015164	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780	ENSGT00940000158323	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00550000074946	ENSGT00940000159904	ENSGT00940000158444	ENSGT00940000158973.b	ENSGT00390000015164	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780	ENSGT00940000158323	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00550000074946	ENSGT00940000159904	ENSGT00940000158444	ENSGT00940000158973.b	ENSGT00390000015164	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780	ENSGT00940000158323	ENSGT00730000111410 #17	ENSGT00950000183558	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00950000185366	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00970000197098	ENSGT00390000012286	ENSGT00730000111369 #29	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b.k
koala	MODERN SPECIES	15	NPC1L1 (ENSPCIG00000009343)	NUDCD3 (ENSPCIG00000009349)	CAMK2B (ENSPCIG00000009356)	YKT6 (ENSPCIG00000009363)	GCK (ENSPCIG00000009364)	MYL7 (ENSPCIG00000009366)	POLD2 (ENSPCIG00000009368)	ENSPCIG00000009371	ENSPCIG00000009378 #17	ELP (ENSPCIG00000031725)	PIGT (ENSPCIG00000007641) #19	ENSPCIG00000007649	DBNDD2 (ENSPCIG00000032154) #20	ENSPCIG00000004066 #21	SYS1 (ENSPCIG00000037282)	SDC4 (ENSPCIG00000014162) #22	ENSPCIG00000001696	ENSPCIG00000001676	ENSPCIG00000003480	RBPJL (ENSPCIG00000035128) #23	MATN4 (ENSPCIG00000008571) #24	ENSPCIG00000037185	ENSPCIG00000009381	ENSPCIG00000009382	ENSPCIG00000009383 #25	WFDC5 (ENSPCIG00000009385) #29	KCNS1 (ENSPCIG00000009386) #30	STK4 (ENSPCIG00000009388) #31	TOMM34 (ENSPCIG00000009391) #32	PABPC1L (ENSPCIG00000009393) #33	RIMS4 (ENSPCIG00000009394) #35
Common wonbat	MODERN SPECIES	35	TMED4 (ENSVURG00010003416)	DDX56 (ENSVURG00010003398)	NPC1L1 (ENSVURG00010002742)	ENSVURG00010002678	CAMK2B (ENSVURG00010002584)	YKT6 (ENSVURG00010002526)	GCK (ENSVURG00010002504)	MYL7 (ENSVURG00010002490)	POLD2 (ENSVURG00010002444)	AEBP1 (ENSVURG00010002418)	ENSVURG00010002410 #17	ENSVURG00010002402	PIGT (ENSVURG00010002242) #19	DBNDD2 (ENSVURG00010002204) #20	SYS1 (ENSVURG00010002162)	SDC4 (ENSVURG00010002146) #22	ENSVURG00010002136	RBPJL (ENSVURG00010002093) #23	MATN4 (ENSVURG00010001996) #24	ENSVURG00010001975	ENSVURG00010001962	ENSVURG00010001948	WFDC5 (ENSVURG00010001927) #29	KCNS1 (ENSVURG00010001917) #30	STK4 (ENSVURG00010001901) #31	TOMM34 (ENSVURG00010001880) #32	ENSVURG00010001835 #33	ENSVURG00010001793 #33	YWHAB (ENSVURG00010001775) #34	RIMS4 (ENSVURG00010001755) #35	KCNK15 (ENSVURG00010001733) #36
Wallaby	MODERN SPECIES	3138															ENSMEUG00000000823	ENSMEUG00000000817 #22
Tasmanian devil	MODERN SPECIES	1	NPC1L1 (ENSSHAG00000016456)	NUDCD3 (ENSSHAG00000026201)	CAMK2B (ENSSHAG00000015076)	YKT6 (ENSSHAG00000014984)	GCK (ENSSHAG00000014686)	MYL7 (ENSSHAG00000014614)	POLD2 (ENSSHAG00000014500)	ENSSHAG00000014422	ENSSHAG00000002717 #17	PIGT (ENSSHAG00000014088) #19	ENSSHAG00000014175	DBNDD2 (ENSSHAG00000024992) #20	ENSSHAG00000013807 #21	ENSSHAG00000028228	SYS1 (ENSSHAG00000021723)	SDC4 (ENSSHAG00000013574) #22	ENSSHAG00000022888 #24	RBPJL (ENSSHAG00000013207) #23	ENSSHAG00000013164 #24	ENSSHAG00000012755 #25	WFDC5 (ENSSHAG00000026620) #29	KCNS1 (ENSSHAG00000023189) #30	STK4 (ENSSHAG00000011734) #31	TOMM34 (ENSSHAG00000011585) #32	PABPC1L (ENSSHAG00000011446) #33	YWHAB (ENSSHAG00000028661) #34	RIMS4 (ENSSHAG00000024691) #35	KCNK15 (ENSSHAG00000022423) #36	CCN5 (ENSSHAG00000009894) #37	ADA (ENSSHAG00000009001)	PKIG (ENSSHAG00000030230)
Opossum	MODERN SPECIES		ENSMODG00000048231	CAMK2B (ENSMODG00000016162)	YKT6 (ENSMODG00000048366)	GCK (ENSMODG00000016167)	MYL7 (ENSMODG00000016168)	POLD2 (ENSMODG00000016172)	AEBP1 (ENSMODG00000016176)	WFDC2 (ENSMODG00000016177) #17	ELP (ENSMODG00000023237)	ENSMODG00000044504	PIGT (ENSMODG00000016178) #19	DBNDD2 (ENSMODG00000016180) #20	ENSMODG00000050195 #21	ENSMODG00000046355	SYS1 (ENSMODG00000045438)	SDC4 (ENSMODG00000042119) #22	RBPJL (ENSMODG00000016187) #23	MATN4 (ENSMODG00000016189) #24	ENSMODG00000051289	ENSMODG00000016190 #29	KCNS1 (ENSMODG00000016191) #30	STK4 (ENSMODG00000016194) #31	TOMM34 (ENSMODG00000016196) #32	PABPC1L (ENSMODG00000016198) #33	YWHAB (ENSMODG00000016200) #34	RIMS4 (ENSMODG00000016202) #35	KCNK15 (ENSMODG00000016203) #36	CCN5 (ENSMODG00000016205) #37	ENSMODG00000016206	ADA (ENSMODG00000016207)	SERINC3 (ENSMODG00000016210)
Platypus	MODERN SPECIES	19	PRTG (ENSOANG00000008531)	PYGO1 (ENSOANG00000008537)	DNAAF4 (ENSOANG00000008539)	ENSOANG00000040868	CCPG1 (ENSOANG00000008542)	PIGB (ENSOANG00000008547)	PIGBOS1 (ENSOANG00000045389)	RAB27A (ENSOANG00000001183)	RSL24D1 (ENSOANG00000038127)	UNC13C (ENSOANG00000049555)	ENSOANG00000040664	PIGT (ENSOANG00000036047) #19	ENSOANG00000050196 #20	ENSOANG00000045884 #21	SYS1 (ENSOANG00000008862)	SDC4 (ENSOANG00000010559) #22	RBPJL (ENSOANG00000037392) #23	ENSOANG00000020962 #25	ENSOANG00000007842 #29	KCNS1 (ENSOANG00000048955) #30	STK4 (ENSOANG00000038733) #31	PABPC1L (ENSOANG00000015793) #33	YWHAB (ENSOANG00000015795) #34	RIMS4 (ENSOANG00000008896) #35	CCN5 (ENSOANG00000048718) #37	ADA (ENSOANG00000009775)	ENSOANG00000044044	SERINC3 (ENSOANG00000045523)	TTPAL (ENSOANG00000006739)	HNF4A (ENSOANG00000006363)	R3HDML (ENSOANG00000002714)
Sauria	ANCESTRAL SPECIES	16	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Archosauria	ANCESTRAL SPECIES	13	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Aves	ANCESTRAL SPECIES	16	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Neognathae	ANCESTRAL SPECIES	16	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707
Neognathae_b	ANCESTRAL SPECIES	17	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Neognathae_c	ANCESTRAL SPECIES	20	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407	ENSGT00940000157965
Golden eagle	MODERN SPECIES	19	ENSACCG00020010966	TOP1 (ENSACCG00020010916)	PLCG1 (ENSACCG00020010818)	ZHX3 (ENSACCG00020010800)	LPIN3 (ENSACCG00020010782)	EMILIN3 (ENSACCG00020010763)	RPN2 (ENSACCG00020010670)	GHRH (ENSACCG00020010519)	MANBAL (ENSACCG00020010509)	SRC (ENSACCG00020010492)	BLCAP (ENSACCG00020010476)	PIGT (ENSACCG00020010457) #19	DBNDD2 (ENSACCG00020010444) #20	ENSACCG00020010437	SYS1 (ENSACCG00020010428)	SDC4 (ENSACCG00020010417) #22	RBPJL (ENSACCG00020010407) #23	MATN4 (ENSACCG00020010396) #24	ENSACCG00020010376	KCNS1 (ENSACCG00020010367) #30	STK4 (ENSACCG00020010352) #31	ENSACCG00020010331	ENSACCG00020010317 #33	ENSACCG00020010303 #33	YWHAB (ENSACCG00020010283) #34	RIMS4 (ENSACCG00020010274) #35	KCNK15 (ENSACCG00020010264) #36	ENSACCG00020010257	CCN5 (ENSACCG00020010235) #37	ADA (ENSACCG00020010193)	PKIG (ENSACCG00020010183)
Kakapo	MODERN SPECIES	5	EPB41L1 (ENSSHBG00005006827)	SRSF6 (ENSSHBG00005006791)	L3MBTL1 (ENSSHBG00005006765)	ENSSHBG00005006465	ENSSHBG00005006392	ENSSHBG00005006367	RPN2 (ENSSHBG00005006337)	ENSSHBG00005006300	MANBAL (ENSSHBG00005006284)	SRC (ENSSHBG00005006259)	BLCAP (ENSSHBG00005006230)	PIGT (ENSSHBG00005006214) #19	DBNDD2 (ENSSHBG00005006192) #20	ENSSHBG00005006165	SYS1 (ENSSHBG00005006153)	SDC4 (ENSSHBG00005006138) #22	RBPJL (ENSSHBG00005005989) #23	MATN4 (ENSSHBG00005005948) #24	ENSSHBG00005005928	KCNS1 (ENSSHBG00005005915) #30	STK4 (ENSSHBG00005005904) #31	ENSSHBG00005005891	ENSSHBG00005005872 #33	ENSSHBG00005005838 #33	YWHAB (ENSSHBG00005005826) #34	RIMS4 (ENSSHBG00005005810) #35	KCNK15 (ENSSHBG00005005799) #36	ENSSHBG00005005789	CCN5 (ENSSHBG00005005630) #37	ADA (ENSSHBG00005005562)	PKIG (ENSSHBG00005005541)
Passeriformes	ANCESTRAL SPECIES	19	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Passeriformes_d	ANCESTRAL SPECIES	19	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Flycatcher	MODERN SPECIES	12	MAFB (ENSFALG00000005612)	TOP1 (ENSFALG00000005586)	PLCG1 (ENSFALG00000005574)	ZHX3 (ENSFALG00000005566)	LPIN3 (ENSFALG00000005561)	EMILIN3 (ENSFALG00000024656)	RPN2 (ENSFALG00000005557)	GHRH (ENSFALG00000025330)	MANBAL (ENSFALG00000005549)	SRC (ENSFALG00000005512)	BLCAP (ENSFALG00000015339)	PIGT (ENSFALG00000005470) #19	DBNDD2 (ENSFALG00000023432) #20	ENSFALG00000023366	ENSFALG00000026151	SDC4 (ENSFALG00000005448) #22	RBPJL (ENSFALG00000005428) #23	MATN4 (ENSFALG00000005417) #24	ENSFALG00000025222	KCNS1 (ENSFALG00000005414) #30	STK4 (ENSFALG00000005398) #31	ENSFALG00000005382	PABPC1L (ENSFALG00000005372) #33	YWHAB (ENSFALG00000005366) #34	RIMS4 (ENSFALG00000005359) #35	KCNK15 (ENSFALG00000005351) #36	ENSFALG00000023272	CCN5 (ENSFALG00000027916) #37	ADA (ENSFALG00000005317)	ENSFALG00000028674	SERINC3 (ENSFALG00000005276)
Passeriformes_g	ANCESTRAL SPECIES	19	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a
Medium ground finch	MODERN SPECIES	40	ENSGFOG00000004275	TOP1 (ENSGFOG00000003195)	PLCG1 (ENSGFOG00000003099)	ZHX3 (ENSGFOG00000003074)	ENSGFOG00000003061	EMILIN3 (ENSGFOG00000003050)	RPN2 (ENSGFOG00000002746)	GHRH (ENSGFOG00000002700)	MANBAL (ENSGFOG00000002683)	SRC (ENSGFOG00000002672)	BLCAP (ENSGFOG00000002663)	PIGT (ENSGFOG00000002496) #19	DBNDD2 (ENSGFOG00000002476) #20	ENSGFOG00000002453	SYS1 (ENSGFOG00000002433)	SDC4 (ENSGFOG00000002392) #22	RBPJL (ENSGFOG00000002374) #23	MATN4 (ENSGFOG00000002328) #24	ENSGFOG00000002303	KCNS1 (ENSGFOG00000002294) #30	STK4 (ENSGFOG00000002131) #31	TOMM34 (ENSGFOG00000002109) #32	ENSGFOG00000002097 #33	PABPC1L (ENSGFOG00000002077) #33	YWHAB (ENSGFOG00000002069) #34	RIMS4 (ENSGFOG00000002059) #35	KCNK15 (ENSGFOG00000002055) #36	CCN5 (ENSGFOG00000002042) #37	ADA (ENSGFOG00000001994)	PKIG (ENSGFOG00000001978)	SERINC3 (ENSGFOG00000001959)
Passeroidea	ANCESTRAL SPECIES	18	ENSGT00940000160486	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00960000193217	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT01010000222962	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407
Zebra finch	MODERN SPECIES	13	DHX35 (ENSTGUG00000004620)	MAFB (ENSTGUG00000025008)	TOP1 (ENSTGUG00000004676)	PLCG1 (ENSTGUG00000004737)	ZHX3 (ENSTGUG00000004817)	LPIN3 (ENSTGUG00000004825)	EMILIN3 (ENSTGUG00000004880)	RPN2 (ENSTGUG00000004892)	GHRH (ENSTGUG00000004928)	ENSTGUG00000028661	SRC (ENSTGUG00000004937)	BLCAP (ENSTGUG00000024673)	PIGT (ENSTGUG00000004963) #19	DBNDD2 (ENSTGUG00000005004) #20	ENSTGUG00000023602	SDC4 (ENSTGUG00000025016) #22	RBPJL (ENSTGUG00000005009) #23	MATN4 (ENSTGUG00000005029) #24	ENSTGUG00000022434	KCNS1 (ENSTGUG00000005049) #30	STK4 (ENSTGUG00000005057) #31	TOMM34 (ENSTGUG00000005104) #32	PABPC1L (ENSTGUG00000005114) #33	YWHAB (ENSTGUG00000024139) #34	RIMS4 (ENSTGUG00000028883) #35	KCNK15 (ENSTGUG00000005191) #36	ENSTGUG00000005199	CCN5 (ENSTGUG00000005202) #37	ADA (ENSTGUG00000005206)	SERINC3 (ENSTGUG00000005242)	TTPAL (ENSTGUG00000005257)
Common canary	MODERN SPECIES	21	TOP1 (ENSSCAG00000012268)	PLCG1 (ENSSCAG00000012473)	ZHX3 (ENSSCAG00000012483)	LPIN3 (ENSSCAG00000012488)	EMILIN3 (ENSSCAG00000012505)	ENSSCAG00000012507	RPN2 (ENSSCAG00000012516)	ENSSCAG00000012536	MANBAL (ENSSCAG00000012540)	SRC (ENSSCAG00000012544)	BLCAP (ENSSCAG00000012551)	PIGT (ENSSCAG00000012560) #19	DBNDD2 (ENSSCAG00000012571) #20	ENSSCAG00000012575	ENSSCAG00000012578	SDC4 (ENSSCAG00000012584) #22	RBPJL (ENSSCAG00000012601) #23	MATN4 (ENSSCAG00000012607) #24	ENSSCAG00000012614	KCNS1 (ENSSCAG00000012617) #30	STK4 (ENSSCAG00000012626) #31	TOMM34 (ENSSCAG00000012640) #32	PABPC1L (ENSSCAG00000012677) #33	YWHAB (ENSSCAG00000012845) #34	RIMS4 (ENSSCAG00000012849) #35	KCNK15 (ENSSCAG00000012855) #36	ENSSCAG00000012863	CCN5 (ENSSCAG00000012876) #37	ADA (ENSSCAG00000012914)	ENSSCAG00000012919	SERINC3 (ENSSCAG00000012922)
Great tit	MODERN SPECIES	12	TOP1 (ENSPMJG00000003051)	ENSPMJG00000003939	PLCG1 (ENSPMJG00000003943)	ZHX3 (ENSPMJG00000003972)	LPIN3 (ENSPMJG00000003976)	EMILIN3 (ENSPMJG00000003979)	RPN2 (ENSPMJG00000003981)	ENSPMJG00000004008	MANBAL (ENSPMJG00000004018)	SRC (ENSPMJG00000004037)	BLCAP (ENSPMJG00000004042)	PIGT (ENSPMJG00000004046) #19	DBNDD2 (ENSPMJG00000004051) #20	ENSPMJG00000004055	SYS1 (ENSPMJG00000004056)	SDC4 (ENSPMJG00000004058) #22	RBPJL (ENSPMJG00000004060) #23	MATN4 (ENSPMJG00000004064) #24	ENSPMJG00000004073	KCNS1 (ENSPMJG00000004077) #30	STK4 (ENSPMJG00000004079) #31	ENSPMJG00000004095	PABPC1L (ENSPMJG00000004104) #33	YWHAB (ENSPMJG00000004119) #34	RIMS4 (ENSPMJG00000004141) #35	KCNK15 (ENSPMJG00000004146) #36	ENSPMJG00000004149	CCN5 (ENSPMJG00000004151) #37	ADA (ENSPMJG00000004251)	PKIG (ENSPMJG00000004255)	SERINC3 (ENSPMJG00000004258)
Galloanserae	ANCESTRAL SPECIES	15	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT01010000222962	ENSGT01030000234623.a.a.a.a.a
Phasianidae	ANCESTRAL SPECIES	15	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.y.a	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01020000230603	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT01010000222962	ENSGT01030000234623.a.a.a.a.a
Phasianidae_b	ANCESTRAL SPECIES	15	ENSGT00940000160486	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.y.a.a	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT01010000222962	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407
Turkey	MODERN SPECIES	14	ENSMGAG00000003874	ENSMGAG00000003949	ADA (ENSMGAG00000003859)	ENSMGAG00000015531	ENSMGAG00000016956	ENSMGAG00000003852 #37	ENSMGAG00000004020 #35	ENSMGAG00000003999 #34	ENSMGAG00000003654 #32	ENSMGAG00000003674 #33	ENSMGAG00000003574	ENSMGAG00000018686	KCNS1 (ENSMGAG00000003530) #30	ENSMGAG00000021763 #31	MATN4 (ENSMGAG00000003835) #24	ENSMGAG00000003644 #22	ENSMGAG00000017264 #23	ENSMGAG00000003549	SYS1 (ENSMGAG00000021737)	ENSMGAG00000003537 #20	ENSMGAG00000003492 #19	ENSMGAG00000015521	SRC (ENSMGAG00000003468)	ENSMGAG00000002893	ENSMGAG00000002232	ENSMGAG00000003428	ENSMGAG00000003334	ENSMGAG00000003320	ENSMGAG00000003300	ENSMGAG00000003174	ENSMGAG00000003153
Chicken	MODERN SPECIES	12	MAFB (ENSGALG00010021761)	TOP1 (ENSGALG00010022623)	PLCG1 (ENSGALG00010022365)	ZHX3 (ENSGALG00010022377)	EMILIN3 (ENSGALG00010022392)	RPN2 (ENSGALG00010022438)	GHRH (ENSGALG00010022562)	MANBAL (ENSGALG00010022593)	SRC (ENSGALG00010021638)	BLCAP (ENSGALG00010021670)	PIGT (ENSGALG00010021680) #19	DBNDD2 (ENSGALG00010021685) #20	ENSGALG00010024979 #21	ENSGALG00010021694	SYS1 (ENSGALG00010021699)	SDC4 (ENSGALG00010021717) #22	RBPJL (ENSGALG00010021729) #23	MATN4 (ENSGALG00010021742) #24	KCNS1 (ENSGALG00010021503) #30	STK4 (ENSGALG00010021540) #31	ENSGALG00010021643	PABPC1L (ENSGALG00010022065) #33	YWHAB (ENSGALG00010022076) #34	RIMS4 (ENSGALG00010024212) #35	KCNK15 (ENSGALG00010024222) #36	ENSGALG00010024254	ENSGALG00010024266 #37	ADA (ENSGALG00010024286)	PKIG (ENSGALG00010024304)	SERINC3 (ENSGALG00010024313)	TTPAL (ENSGALG00010024323)
Japanese quail	MODERN SPECIES	12	PLCG1 (ENSCJPG00005020909)	ZHX3 (ENSCJPG00005020912)	EMILIN3 (ENSCJPG00005020913)	RPN2 (ENSCJPG00005020915)	ENSCJPG00005020916	ENSCJPG00005020917	ENSCJPG00005020918	ENSCJPG00005020919	SRC (ENSCJPG00005020921)	BLCAP (ENSCJPG00005020922)	PIGT (ENSCJPG00005020923) #19	DBNDD2 (ENSCJPG00005020924) #20	ENSCJPG00005020925 #21	ENSCJPG00005020926	SYS1 (ENSCJPG00005020927)	SDC4 (ENSCJPG00005020928) #22	RBPJL (ENSCJPG00005020929) #23	MATN4 (ENSCJPG00005020930) #24	ENSCJPG00005020931	KCNS1 (ENSCJPG00005020932) #30	STK4 (ENSCJPG00005020933) #31	ENSCJPG00005020934	PABPC1L (ENSCJPG00005020935) #33	YWHAB (ENSCJPG00005020936) #34	RIMS4 (ENSCJPG00005020937) #35	KCNK15 (ENSCJPG00005020938) #36	ENSCJPG00005020939	CCN5 (ENSCJPG00005020940) #37	ADA (ENSCJPG00005000898)	ENSCJPG00005000923	SERINC3 (ENSCJPG00005000934)
Anatidae	ANCESTRAL SPECIES	22	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422.z	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00390000017387 #21	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000003427.g.a	ENSGT01100000263475.d.a.a.a.b
Pink-footed goose	MODERN SPECIES	383				LPIN3 (ENSABRG00000015732)	EMILIN3 (ENSABRG00000015730)	RPN2 (ENSABRG00000015703)	ENSABRG00000015694	MANBAL (ENSABRG00000015690)	SRC (ENSABRG00000015683)	BLCAP (ENSABRG00000015678)	PIGT (ENSABRG00000015665) #19	DBNDD2 (ENSABRG00000015663) #20	ENSABRG00000015660 #21	ENSABRG00000015654	SYS1 (ENSABRG00000015648)	SDC4 (ENSABRG00000015641) #22	ENSABRG00000015636	ENSABRG00000015633
Duck	MODERN SPECIES	12	TOP1 (ENSAPLG00000008429)	ENSAPLG00000028277	ENSAPLG00000006836	ZHX3 (ENSAPLG00000021225)	RPN2 (ENSAPLG00000004900)	ENSAPLG00000004812	MANBAL (ENSAPLG00000004792)	ENSAPLG00000025635	ENSAPLG00000022853 #20	ENSAPLG00000031040	PIGT (ENSAPLG00000003899) #19	ENSAPLG00000003866 #20	ENSAPLG00000019085 #21	ENSAPLG00000002210	SYS1 (ENSAPLG00000018013)	ENSAPLG00000027519 #22	ENSAPLG00000003749	ENSAPLG00000003584	MMP24 (ENSAPLG00000007771)	EIF6 (ENSAPLG00000025867)	FAM83C (ENSAPLG00000007684)	UQCC1 (ENSAPLG00000007532)	GDF5 (ENSAPLG00000027580)	CEP250 (ENSAPLG00000007185)	ENSAPLG00000006627	ENSAPLG00000006576	ENSAPLG00000006145	ENSAPLG00000027748	ENSAPLG00000005376	CPNE1 (ENSAPLG00000004619)	NFS1 (ENSAPLG00000003958)
African ostrich	MODERN SPECIES	491	TOP1 (ENSSCUG00000005819)	PLCG1 (ENSSCUG00000005814)	ZHX3 (ENSSCUG00000005813)	ENSSCUG00000005810	ENSSCUG00000005807	EMILIN3 (ENSSCUG00000005806)	RPN2 (ENSSCUG00000005803)	ENSSCUG00000005801	MANBAL (ENSSCUG00000005800)	SRC (ENSSCUG00000005799)	BLCAP (ENSSCUG00000005798)	PIGT (ENSSCUG00000005797) #19	ENSSCUG00000005794 #20	ENSSCUG00000005793	SYS1 (ENSSCUG00000005792)	SDC4 (ENSSCUG00000005791) #22	RBPJL (ENSSCUG00000005790) #23	MATN4 (ENSSCUG00000005789) #24	ENSSCUG00000005787	KCNS1 (ENSSCUG00000005786) #30	STK4 (ENSSCUG00000005784) #31	TOMM34 (ENSSCUG00000005781) #32	PABPC1L (ENSSCUG00000005780) #33	YWHAB (ENSSCUG00000005778) #34	KCNK15 (ENSSCUG00000005777) #36	RIMS4 (ENSSCUG00000005775) #35	ENSSCUG00000005771	CCN5 (ENSSCUG00000005770) #37	ADA (ENSSCUG00000005768)	PKIG (ENSSCUG00000005766)	SERINC3 (ENSSCUG00000005764)
Australian saltwater crocodile	MODERN SPECIES	41	ENSCPRG00005012430	MAFB (ENSCPRG00005012424)	TOP1 (ENSCPRG00005012402)	PLCG1 (ENSCPRG00005012143)	ZHX3 (ENSCPRG00005012099)	LPIN3 (ENSCPRG00005012082)	EMILIN3 (ENSCPRG00005012079)	RPN2 (ENSCPRG00005012065)	ENSCPRG00005012059	MANBAL (ENSCPRG00005012050)	SRC (ENSCPRG00005012037)	BLCAP (ENSCPRG00005012032)	DBNDD2 (ENSCPRG00005012030) #20	ENSCPRG00005012021	SYS1 (ENSCPRG00005012015)	SDC4 (ENSCPRG00005012010) #22	RBPJL (ENSCPRG00005011998) #23	MATN4 (ENSCPRG00005011989) #24	ENSCPRG00005011984	SLPI (ENSCPRG00005011979) #25	ENSCPRG00005011975	KCNS1 (ENSCPRG00005011966) #30	ENSCPRG00005011962	STK4 (ENSCPRG00005011953) #31	ENSCPRG00005011950	PABPC1L (ENSCPRG00005011861) #33	YWHAB (ENSCPRG00005011857) #34	RIMS4 (ENSCPRG00005011852) #35	KCNK15 (ENSCPRG00005011851) #36	ENSCPRG00005011846	CCN5 (ENSCPRG00005011844) #37
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407
Testudinoidea	ANCESTRAL SPECIES	28	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407
Emydidae	ANCESTRAL SPECIES	50	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106.x.b #33	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00530000063023.B.k	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
painted turtle	MODERN SPECIES	700	TOP1 (ENSCPBG00000017941)	PLCG1 (ENSCPBG00000017911)	ZHX3 (ENSCPBG00000017905)	LPIN3 (ENSCPBG00000017892)	EMILIN3 (ENSCPBG00000017889)	RPN2 (ENSCPBG00000017877)	ENSCPBG00000017871	MANBAL (ENSCPBG00000017865)	SRC (ENSCPBG00000017859)	BLCAP (ENSCPBG00000017855)	PIGT (ENSCPBG00000017850) #19	DBNDD2 (ENSCPBG00000017847) #20	ENSCPBG00000017845	ENSCPBG00000017844	SYS1 (ENSCPBG00000017843)	SDC4 (ENSCPBG00000017841) #22	RBPJL (ENSCPBG00000017836) #23	MATN4 (ENSCPBG00000017829) #24	ENSCPBG00000017825	ENSCPBG00000017822	ENSCPBG00000017818	ENSCPBG00000017815	ENSCPBG00000017814	ENSCPBG00000017812	SLPI (ENSCPBG00000017804) #25	KCNS1 (ENSCPBG00000017793) #30	ENSCPBG00000017782	STK4 (ENSCPBG00000017770) #31	ENSCPBG00000017765 #33	PABPC1L (ENSCPBG00000017755) #33	YWHAB (ENSCPBG00000017746) #34
Three-toed box turtle	MODERN SPECIES	108	ENSTMTG00000014543	MAFB (ENSTMTG00000014537)	TOP1 (ENSTMTG00000013991)	PLCG1 (ENSTMTG00000013440)	ZHX3 (ENSTMTG00000013363)	LPIN3 (ENSTMTG00000012429)	EMILIN3 (ENSTMTG00000012308)	RPN2 (ENSTMTG00000012273)	ENSTMTG00000012254	MANBAL (ENSTMTG00000012239)	SRC (ENSTMTG00000011827)	BLCAP (ENSTMTG00000011791)	PIGT (ENSTMTG00000011736) #19	DBNDD2 (ENSTMTG00000011721) #20	ENSTMTG00000011705	SDC4 (ENSTMTG00000011689) #22	RBPJL (ENSTMTG00000011627) #23	ENSTMTG00000011619	MATN4 (ENSTMTG00000011511) #24	KCNS1 (ENSTMTG00000011489) #30	STK4 (ENSTMTG00000011464) #31	ENSTMTG00000011224	ENSTMTG00000020917 #33	ENSTMTG00000020903 #33	YWHAB (ENSTMTG00000020892) #34	RIMS4 (ENSTMTG00000020882) #35	KCNK15 (ENSTMTG00000020876) #36	ENSTMTG00000020873	CCN5 (ENSTMTG00000020854) #37	ADA (ENSTMTG00000020797)
Testudinidae	ANCESTRAL SPECIES	34	ENSGT00960000189497	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106.y #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000160207 #37	ENSGT00950000183113.a.b.i	ENSGT00950000183113.a.b.j	ENSGT00390000002707	ENSGT01030000234623.a.a.a.a.a	ENSGT00940000155407
Goode s thornscrub tortoise	MODERN SPECIES	5	MAFB (ENSGEVG00005009644)	TOP1 (ENSGEVG00005011089)	PLCG1 (ENSGEVG00005009894)	ZHX3 (ENSGEVG00005009685)	LPIN3 (ENSGEVG00005009617)	EMILIN3 (ENSGEVG00005009554)	RPN2 (ENSGEVG00005009442)	ENSGEVG00005009374	MANBAL (ENSGEVG00005009345)	SRC (ENSGEVG00005009310)	BLCAP (ENSGEVG00005009275)	PIGT (ENSGEVG00005009236) #19	DBNDD2 (ENSGEVG00005009205) #20	ENSGEVG00005009135	SYS1 (ENSGEVG00005009110)	SDC4 (ENSGEVG00005009088) #22	RBPJL (ENSGEVG00005009025) #23	MATN4 (ENSGEVG00005008768) #24	ENSGEVG00005008703	ENSGEVG00005008638	KCNS1 (ENSGEVG00005008588) #30	STK4 (ENSGEVG00005008566) #31	ENSGEVG00005008548	PABPC1L (ENSGEVG00005008519) #33	YWHAB (ENSGEVG00005008499) #34	ENSGEVG00005008486	RIMS4 (ENSGEVG00005008455) #35	KCNK15 (ENSGEVG00005008413) #36	CCN5 (ENSGEVG00005008390) #37	ENSGEVG00005008322	ENSGEVG00005008245
Abingdon island giant tortoise	MODERN SPECIES	2599	ENSCABG00000000220	TOP1 (ENSCABG00000020169)	PLCG1 (ENSCABG00000020159)	ZHX3 (ENSCABG00000020158)	LPIN3 (ENSCABG00000020152)	EMILIN3 (ENSCABG00000020144)	RPN2 (ENSCABG00000020134)	ENSCABG00000020132	MANBAL (ENSCABG00000020130)	SRC (ENSCABG00000020125)	BLCAP (ENSCABG00000020123)	PIGT (ENSCABG00000020116) #19	DBNDD2 (ENSCABG00000020113) #20	ENSCABG00000020110	SYS1 (ENSCABG00000020109)	SDC4 (ENSCABG00000020106) #22	RBPJL (ENSCABG00000020103) #23	MATN4 (ENSCABG00000020096) #24	SLPI (ENSCABG00000020094) #25	ENSCABG00000020091	ENSCABG00000020089	ENSCABG00000020087	ENSCABG00000020086	KCNS1 (ENSCABG00000020084) #30	STK4 (ENSCABG00000020080) #31	ENSCABG00000020078	ENSCABG00000020074 #33	ENSCABG00000020072 #33	ENSCABG00000020071 #33	YWHAB (ENSCABG00000020070) #34	RIMS4 (ENSCABG00000020069) #35
Chinese turtle	MODERN SPECIES	993	NPY5R (ENSPSIG00000000800)	MAFB (ENSPSIG00000000813)	TOP1 (ENSPSIG00000006937)	PLCG1 (ENSPSIG00000008328)	ZHX3 (ENSPSIG00000010741)	LPIN3 (ENSPSIG00000010922)	EMILIN3 (ENSPSIG00000012207)	RPN2 (ENSPSIG00000012340)	ENSPSIG00000013080	MANBAL (ENSPSIG00000013124)	SRC (ENSPSIG00000013186)	BLCAP (ENSPSIG00000013218)	PIGT (ENSPSIG00000013315) #19	DBNDD2 (ENSPSIG00000013579) #20	SYS1 (ENSPSIG00000013719)	SDC4 (ENSPSIG00000013739) #22	ENSPSIG00000014017 #23	MATN4 (ENSPSIG00000014146) #24	ENSPSIG00000014575	ENSPSIG00000014632	ENSPSIG00000014638	ENSPSIG00000014642
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01090000260372	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT01010000222962	ENSGT01030000234623.a.a.a.a.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01090000260372	ENSGT01010000224213	ENSGT00990000210349	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01090000260372	ENSGT01010000224213	ENSGT00990000210349	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000161058 #32	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01090000260372	ENSGT01010000224213	ENSGT00990000210349	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902.b #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01090000260372	ENSGT01010000224213	ENSGT00990000210349	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00390000008918	ENSGT00940000154697.a.b	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902.b #36	ENSGT00940000155094
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00990000214060	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00730000111217 #25	ENSGT01090000260372	ENSGT01100000265234	ENSGT01010000224213	ENSGT00990000213695	ENSGT00990000210349	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902.b #36	ENSGT00940000155094
Mainland tiger snake	MODERN SPECIES	10	PLCG1 (ENSNSUG00000001095)	ZHX3 (ENSNSUG00000001092)	LPIN3 (ENSNSUG00000000252)	EMILIN3 (ENSNSUG00000000219)	RPN2 (ENSNSUG00000000195)	ENSNSUG00000000171	MANBAL (ENSNSUG00000000158)	SRC (ENSNSUG00000000110)	BLCAP (ENSNSUG00000000088)	PIGT (ENSNSUG00000000026) #19	DBNDD2 (ENSNSUG00000000018) #20	ENSNSUG00000014811	ENSNSUG00000014810	ENSNSUG00000014809	SYS1 (ENSNSUG00000014808)	SDC4 (ENSNSUG00000014807) #22	RBPJL (ENSNSUG00000014806) #23	MATN4 (ENSNSUG00000014805) #24	SLPI (ENSNSUG00000014804) #25	ENSNSUG00000014803	ENSNSUG00000014802	ENSNSUG00000014801	ENSNSUG00000014800	ENSNSUG00000014799	KCNS1 (ENSNSUG00000014798) #30	STK4 (ENSNSUG00000014761) #31	ENSNSUG00000014760	ENSNSUG00000014759 #33	ENSNSUG00000014758 #33	YWHAB (ENSNSUG00000014739) #34	RIMS4 (ENSNSUG00000014738) #35
Eastern brown snake	MODERN SPECIES	8	PLCG1 (ENSPTXG00000007531)	ZHX3 (ENSPTXG00000007530)	LPIN3 (ENSPTXG00000007529)	EMILIN3 (ENSPTXG00000007528)	RPN2 (ENSPTXG00000007527)	ENSPTXG00000007526	MANBAL (ENSPTXG00000007525)	SRC (ENSPTXG00000007524)	ENSPTXG00000007523	PIGT (ENSPTXG00000007522) #19	DBNDD2 (ENSPTXG00000007521) #20	ENSPTXG00000007520	ENSPTXG00000007519	ENSPTXG00000007518	SYS1 (ENSPTXG00000007517)	SDC4 (ENSPTXG00000007516) #22	RBPJL (ENSPTXG00000007515) #23	ENSPTXG00000007514 #24	ENSPTXG00000007512 #24	ENSPTXG00000007510	ENSPTXG00000007509	ENSPTXG00000007507	ENSPTXG00000007505	ENSPTXG00000007503	KCNS1 (ENSPTXG00000007501) #30	STK4 (ENSPTXG00000007499) #31	ENSPTXG00000007497	ENSPTXG00000007496 #33	ENSPTXG00000007495 #33	YWHAB (ENSPTXG00000007494) #34	RIMS4 (ENSPTXG00000007492) #35
Blue-lipped sea krait	MODERN SPECIES	997																ENSLLTG00000014879 #22
Indian cobra	MODERN SPECIES	2	PLCG1 (ENSNNAG00000002395)	ZHX3 (ENSNNAG00000002389)	LPIN3 (ENSNNAG00000002374)	EMILIN3 (ENSNNAG00000002364)	ENSNNAG00000002357	ENSNNAG00000002350	RPN2 (ENSNNAG00000002294)	SRC (ENSNNAG00000002263)	BLCAP (ENSNNAG00000002253)	PIGT (ENSNNAG00000002239) #19	DBNDD2 (ENSNNAG00000002211) #20	ENSNNAG00000002191	ENSNNAG00000002179	ENSNNAG00000002174	SYS1 (ENSNNAG00000002169)	SDC4 (ENSNNAG00000002162) #22	RBPJL (ENSNNAG00000002147) #23	MATN4 (ENSNNAG00000002133) #24	ENSNNAG00000002124	ENSNNAG00000002115	ENSNNAG00000002106	KCNS1 (ENSNNAG00000002100) #30	STK4 (ENSNNAG00000002082) #31	ENSNNAG00000002066	PABPC1L (ENSNNAG00000002003) #33	YWHAB (ENSNNAG00000001973) #34	RIMS4 (ENSNNAG00000001953) #35	KCNK15 (ENSNNAG00000001947) #36	ENSNNAG00000001940	CCN5 (ENSNNAG00000001933) #37	ADA (ENSNNAG00000001920)
Lizard	MODERN SPECIES	3	FAM83D (ENSACAG00000038167)	ENSACAG00000014264	PPP1R16B (ENSACAG00000014183)	ACTR5 (ENSACAG00000014155)	ENSACAG00000042744	ENSACAG00000041645	ENSACAG00000014095	ENSACAG00000041144	ENSACAG00000014094	ENSACAG00000036155	ENSACAG00000042879	ENSACAG00000013632	ENSACAG00000027958	ENSACAG00000027208	ENSACAG00000042017	SDC4 (ENSACAG00000012456) #22	ENSACAG00000044431	RBPJL (ENSACAG00000012362) #23	MATN4 (ENSACAG00000012284) #24	ENSACAG00000040012	ENSACAG00000039979	SLPI (ENSACAG00000028517) #25	ENSACAG00000043190	ENSACAG00000044397	ENSACAG00000038941	ENSACAG00000035827	ENSACAG00000045569	ENSACAG00000035067	ENSACAG00000037865	ENSACAG00000040920	ENSACAG00000045405
Laterata	ANCESTRAL SPECIES	14	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00390000003422	ENSGT00940000158250	ENSGT00390000014105	ENSGT00390000018558 #19	ENSGT00940000161212 #20	ENSGT00960000189856	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663 #22	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT01090000260372	ENSGT01010000224213	ENSGT00990000210349	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00940000155094	ENSGT00940000160207 #37	ENSGT00950000183113.a.b	ENSGT01010000223418
Common wall lizard	MODERN SPECIES	14	RPN2 (ENSPMRG00000021514)	ENSPMRG00000021536	ENSPMRG00000021544	ENSPMRG00000021548	MANBAL (ENSPMRG00000021552)	ENSPMRG00000021556	ENSPMRG00000021561	SRC (ENSPMRG00000021569)	ENSPMRG00000021592	BLCAP (ENSPMRG00000021597)	PIGT (ENSPMRG00000021612) #19	DBNDD2 (ENSPMRG00000021635) #20	ENSPMRG00000021638	ENSPMRG00000008473	SYS1 (ENSPMRG00000008474)	SDC4 (ENSPMRG00000008476) #22	RBPJL (ENSPMRG00000008486) #23	MATN4 (ENSPMRG00000008507) #24	ENSPMRG00000008524	ENSPMRG00000008529	ENSPMRG00000008536	ENSPMRG00000008542	ENSPMRG00000008546	ENSPMRG00000008557	ENSPMRG00000008564	ENSPMRG00000008571	KCNS1 (ENSPMRG00000008576) #30	STK4 (ENSPMRG00000008591) #31	ENSPMRG00000008618	ENSPMRG00000008626 #33	ENSPMRG00000008637 ##34
tuatara	MODERN SPECIES	162		MAFB (ENSSPUG00000003277)	TOP1 (ENSSPUG00000003350)	PLCG1 (ENSSPUG00000003652)	LPIN3 (ENSSPUG00000003774)	ENSSPUG00000003818	RPN2 (ENSSPUG00000003832)	ENSSPUG00000003858	ENSSPUG00000003884	MANBAL (ENSSPUG00000003893)	SRC (ENSSPUG00000003903)	BLCAP (ENSSPUG00000003924)	PIGT (ENSSPUG00000003953) #19	DBNDD2 (ENSSPUG00000004015) #20	SYS1 (ENSSPUG00000004031)	SDC4 (ENSSPUG00000004048) #22	RBPJL (ENSSPUG00000004071) #23	MATN4 (ENSSPUG00000004109) #24
Anura	ANCESTRAL SPECIES	15											ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00940000157086.b #24	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000160902 #36	ENSGT00390000005121	ENSGT00390000007843	ENSGT00940000159091	ENSGT00950000183025.a	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108
Leishan spiny toad	MODERN SPECIES	3	APCDD1L (ENSLLEG00000027178)	VAPB (ENSLLEG00000027149)	ENSLLEG00000027127	RAB22A (ENSLLEG00000027003)	ENSLLEG00000026819	ODAD4 (ENSLLEG00000026698)	ACLY (ENSLLEG00000025915)	KLHL11 (ENSLLEG00000025819)	ENSLLEG00000025738	FAM83C (ENSLLEG00000025582)	ENSLLEG00000025536	UQCC1 (ENSLLEG00000025413)	ENSLLEG00000025346	GDF5 (ENSLLEG00000025320)	ENSLLEG00000025298	SDC4 (ENSLLEG00000025232) #22	MATN4 (ENSLLEG00000025093) #24	KCNS1 (ENSLLEG00000024857) #30	ENSLLEG00000024616	PABPC1L (ENSLLEG00000024384) #33	YWHAB (ENSLLEG00000024333) #34	RIMS4 (ENSLLEG00000024242) #35	KCNK15 (ENSLLEG00000024208) #36	ENSLLEG00000024142	SNF8 (ENSLLEG00000023829)	UBE2Z (ENSLLEG00000023729)	ENSLLEG00000023455	HOXB9 (ENSLLEG00000023395)	HOXB8 (ENSLLEG00000023318)	HOXB7 (ENSLLEG00000023272)	HOXB6 (ENSLLEG00000023245)
Frog	MODERN SPECIES	1	gngt2 (ENSXETG00000033724)	b4galnt2 (ENSXETG00000033376)	ENSXETG00000031036	MGC89221 (ENSXETG00000018647)	tmem98 (ENSXETG00000018649)	ENSXETG00000034880	znf281 (ENSXETG00000018651)	ENSXETG00000049401	sctr (ENSXETG00000027698)	eif6 (ENSXETG00000026867)	fam83c (ENSXETG00000019789)	uqcc1 (ENSXETG00000019787)	gdf5 (ENSXETG00000021223)	ENSXETG00000047148	ENSXETG00000034573	sdc4 (ENSXETG00000022838) #22	matn4 (ENSXETG00000022834) #24	kcns1 (ENSXETG00000027345) #30	stk4 (ENSXETG00000022832) #31	pabpc1l (ENSXETG00000022831) #33	ywhab (ENSXETG00000022830) #34	rims4 (ENSXETG00000044345) #35	ENSXETG00000034484	kcnk15 (ENSXETG00000038181) #36	gip (ENSXETG00000031431)	snf8 (ENSXETG00000022819)	ube2z (ENSXETG00000043685)	calcoco2 (ENSXETG00000022806)	hoxb9 (ENSXETG00000043711)	hoxb8 (ENSXETG00000021993)	hoxb6 (ENSXETG00000021987)
Coelacanth	MODERN SPECIES	1773												anxa13 (ENSLACG00000003093)	FAM83C (ENSLACG00000005534)	UQCC1 (ENSLACG00000006428)	GDF5 (ENSLACG00000009339)	ENSLACG00000010295 #22
Actinopterygii	ANCESTRAL SPECIES	31	ENSGT00950000182991.A.a.c.a.a	ENSGT00940000166479	ENSGT00940000160613	ENSGT00910000148654	ENSGT00940000154468	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000161337.a.a.a	ENSGT00940000161337.a.b	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000160129
Neopterygii	ANCESTRAL SPECIES	41	ENSGT00940000154468.tb.a	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00390000011067.A	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000161337.a.a.b.a	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00390000011067.C	ENSGT00390000011067.A	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000161337.a.a.b.a	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT00940000153773.a.b	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Clupeocephala	ANCESTRAL SPECIES	7	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000161337.a.a.b.a	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000159787 #31	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT00940000153773.a.b	ENSGT00940000157106 #33	ENSGT01090000260040.b.a.b #34
Euteleosteomorpha	ANCESTRAL SPECIES	246	ENSGT00940000155740	ENSGT00940000160611	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT01070000256295
Protacanthopterygii	ANCESTRAL SPECIES	210									ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00400000024545	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT01070000256295
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	975												ENSGT00940000158315	ENSGT00390000018118.f	ENSGT00400000024545	ENSGT00940000160455.a	ENSGT00940000160663.a #22	ENSGT00940000154468.tb.a.c
Salmoninae_a	ANCESTRAL SPECIES	21	ENSGT01090000260040.b.a.b.z.a #34	ENSGT00940000154697.a.b.yb	ENSGT00940000165514.h	ENSGT00390000005197.b #23	ENSGT00940000157086.b.i #24	ENSGT00940000161337.a.a.b.a	ENSGT00940000160611.l	ENSGT00940000162210.c.a	ENSGT00940000166842.c	ENSGT00390000011067.C	ENSGT00390000015972.o.b	ENSGT00940000158315	ENSGT00390000018118.f	ENSGT00400000024545	ENSGT00940000160455.a	ENSGT00940000160663.a #22	ENSGT00940000154468.tb.a.c
Salmo	ANCESTRAL SPECIES	62	ENSGT00940000160129	ENSGT01090000260040.b.a.b.z.a #34	ENSGT00940000154697.a.b.yb	ENSGT00940000165514.h	ENSGT00390000005197.b #23	ENSGT00940000157086.b.i #24	ENSGT00940000161337.a.a.b.a	ENSGT00940000160611.l.a	ENSGT00940000162210.c.a	ENSGT00940000166842.c	ENSGT00390000011067.C	ENSGT00390000015972.o.b	ENSGT00940000158315	ENSGT00990000210957	ENSGT00940000160455.a	ENSGT00940000160663.a #22	ENSGT00940000154468.tb.a.c
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000064193 #34	OM34 (ENSSSAG00000064189)	cox6c (ENSSSAG00000064179)	ENSSSAG00000064166 #23	ENSSSAG00000064143 #24	ENSSSAG00000088675	ENSSSAG00000096333	ENSSSAG00000097892	ENSSSAG00000052815	ENSSSAG00000052810	ENSSSAG00000097779	if6 (ENSSSAG00000052795)	ENSSSAG00000107335	ENSSSAG00000049883	ENSSSAG00000049874	ENSSSAG00000092342 #22	ENSSSAG00000077808	ENSSSAG00000093873	ENSSSAG00000111067	ENSSSAG00000081835	ENSSSAG00000116142	si:dkey-23a13.17 (ENSSSAG00000097335)	ENSSSAG00000083605	ENSSSAG00000088279	ENSSSAG00000101169	ENSSSAG00000102012	ENSSSAG00000105201	ENSSSAG00000102214	ENSSSAG00000077942	slc29a1 (ENSSSAG00000077976)	tmem63b (ENSSSAG00000078118)
River trout	MODERN SPECIES	297																sdc4 (ENSSTUG00000031380) #22	rbm39a (ENSSTUG00000031439)	ENSSTUG00000031911
Oncorhynchus	ANCESTRAL SPECIES	417																ENSGT00940000160663.a #22	ENSGT00940000154468.tb.a.c
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000064604	ENSOMYG00000053027	ENSOMYG00000048563	ENSOMYG00000065438	ENSOMYG00000066134	ENSOMYG00000067206	ENSOMYG00000052948	ENSOMYG00000056480	ENSOMYG00000051206	ENSOMYG00000070506	ENSOMYG00000067344	zgc:113984 (ENSOMYG00000054346)	ENSOMYG00000074864	ENSOMYG00000062259	ENSOMYG00000052318	ENSOMYG00000019021 #22	ENSOMYG00000018961	ENSOMYG00000019017	ENSOMYG00000071064	ENSOMYG00000066475	ENSOMYG00000049763	ENSOMYG00000063237	ENSOMYG00000068607	ENSOMYG00000074727	ENSOMYG00000057016	ENSOMYG00000053927	ENSOMYG00000056884	ENSOMYG00000058125	ENSOMYG00000074584	ENSOMYG00000068489	ENSOMYG00000072049
Oncorhynchus_a	ANCESTRAL SPECIES	553																ENSGT00940000160663.a #22	ENSGT00940000154468.tb.a.c
Chinook salmon	MODERN SPECIES	16	ENSOTSG00005006336	ENSOTSG00005006335	ENSOTSG00005006334	ENSOTSG00005006331	si:dkey-21e13.3 (ENSOTSG00005006329)	zgc:112285 (ENSOTSG00005006326)	timm23a (ENSOTSG00005006323)	ENSOTSG00005006320	prph2a (ENSOTSG00005006319)	tbcc (ENSOTSG00005006318)	BICRAL (ENSOTSG00005006316)	ENSOTSG00005006315	ENSOTSG00005006314	rgs9b (ENSOTSG00005006309)	ENSOTSG00005006308	sdc4 (ENSOTSG00005006306) #22	rbm39a (ENSOTSG00005006235)	llgl2 (ENSOTSG00005006227)	ENSOTSG00005006226	galk1 (ENSOTSG00005006225)	ENSOTSG00005005297	ENSOTSG00005005293	ca10a (ENSOTSG00005005292)	ENSOTSG00005005291	ENSOTSG00005005289	ENSOTSG00005005227	MBTD1 (ENSOTSG00005005197)	tdrkh (ENSOTSG00005005191)	TMEM94 (ENSOTSG00005002859)	ENSOTSG00005002804	ENSOTSG00005002797
Coho salmon	MODERN SPECIES	314							ENSOKIG00005032338	ENSOKIG00005032333	ENSOKIG00005032329	ENSOKIG00005032314	ENSOKIG00005032304	ENSOKIG00005032299	ENSOKIG00005032292	ENSOKIG00005032283	ENSOKIG00005032267	ENSOKIG00005032256 #22	RBM39 (ENSOKIG00005032192)
Huchen	MODERN SPECIES	23	RBPJL (ENSHHUG00000022747) #23	matn4 (ENSHHUG00000022740) #24	ENSHHUG00000022738	ENSHHUG00000022730	rbm12 (ENSHHUG00000022724)	cpne1 (ENSHHUG00000022191)	st3gal8 (ENSHHUG00000022170)	ENSHHUG00000022125	ENSHHUG00000022118	ENSHHUG00000022115	EIF6 (ENSHHUG00000022111)	MMP24 (ENSHHUG00000022083)	uqcc1 (ENSHHUG00000022077)	ENSHHUG00000022074	GDF5 (ENSHHUG00000022025)	ENSHHUG00000022013 #22	rbm39a (ENSHHUG00000021944)
Salmoninae	ANCESTRAL SPECIES	341	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611.k	ENSGT00940000162210.d	ENSGT00940000162210.c.b	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842.d	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118.e	ENSGT00940000160455.b	ENSGT00940000176933	ENSGT00940000160663.b #22	ENSGT00390000018547	ENSGT00940000157086.b.j #24	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000165514.g	ENSGT00940000154697.a.b.xb	ENSGT01090000260040.b.a.b.z.b #34	ENSGT00940000158934 #35	ENSGT00940000166055
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00390000012257	ENSGT00940000154468.tb.a.d	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611.k	ENSGT00940000162210.c.b	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842.d	ENSGT00940000158853	ENSGT00390000015972.o.a	ENSGT00940000160254	ENSGT00390000018118.e	ENSGT00940000160455.b	ENSGT00940000176933	ENSGT00940000160663.b #22	ENSGT00390000018547	ENSGT00940000157086.b.j #24	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000165514.g	ENSGT00940000154697.a.b.xb	ENSGT01090000260040.b.a.b.z.b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000159006.c.a.a	ENSGT00940000154129.gd.a.a	ENSGT00940000160763.g
Salmo	ANCESTRAL SPECIES	6	ENSGT00530000063880.a.h	ENSGT00390000012257	ENSGT00940000154468.tb.a.d	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611.k	ENSGT00940000162210.c.b	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842.d	ENSGT00940000158853	ENSGT00390000015972.o.a	ENSGT00940000160254	ENSGT00390000018118.e	ENSGT00940000160455.b	ENSGT00940000160663.b #22	ENSGT00390000018547	ENSGT00940000157086.b.j #24	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000165514.g	ENSGT00940000154697.a.b.xb	ENSGT01090000260040.b.a.b.z.b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000159006.c.a.a	ENSGT00940000154129.gd.a.a	ENSGT00940000160763.g	ENSGT00940000161293.c
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000118923	ENSSSAG00000097060	ENSSSAG00000075221	nfs1 (ENSSSAG00000075223)	rbm12 (ENSSSAG00000075227)	cpne1 (ENSSSAG00000075229)	ENSSSAG00000075250	ENSSSAG00000075332	st3gal8 (ENSSSAG00000075351)	map1lc3a (ENSSSAG00000075357)	eif6 (ENSSSAG00000075361)	ENSSSAG00000085869	fam83c (ENSSSAG00000075369)	uqcc1 (ENSSSAG00000075372)	GDF5 (ENSSSAG00000082296)	ENSSSAG00000084959 #22	oser1 (ENSSSAG00000050524)	matn4 (ENSSSAG00000050553) #24	ENSSSAG00000088918	or90a1 (ENSSSAG00000050578)	KCNS1 (ENSSSAG00000050596) #30	stk4 (ENSSSAG00000050672)	cox6c (ENSSSAG00000050777)	tomm34 (ENSSSAG00000050785)	ENSSSAG00000050790 #34	ENSSSAG00000089084 #35	ENSSSAG00000050804	ENSSSAG00000050832	ENSSSAG00000053031	ENSSSAG00000053096	ENSSSAG00000053099
River trout	MODERN SPECIES	7	psmf1 (ENSSTUG00000035183)	rbm39a (ENSSTUG00000035109)	si:ch211-15p9.2 (ENSSTUG00000035098)	nfs1 (ENSSTUG00000035045)	rbm12 (ENSSTUG00000035037)	ENSSTUG00000035021	ENSSTUG00000035010	ENSSTUG00000034794	ENSSTUG00000034730	st3gal8 (ENSSTUG00000034719)	map1lc3a (ENSSTUG00000034699)	eif6 (ENSSTUG00000034685)	fam83c (ENSSTUG00000034681)	uqcc1 (ENSSTUG00000034638)	GDF5 (ENSSTUG00000034615)	sdc4 (ENSSTUG00000034600) #22	oser1 (ENSSTUG00000034591)	ENSSTUG00000034576	matn4 (ENSSTUG00000034549) #24	or90a1 (ENSSTUG00000034529)	ENSSTUG00000034498	KCNS1 (ENSSTUG00000034455) #30	ENSSTUG00000033646	cox6c (ENSSTUG00000033586)	tomm34 (ENSSTUG00000033567)	YWHAB (ENSSTUG00000033516) #34	RIMS4 (ENSSTUG00000033491) #35	ENSSTUG00000033463	MAP3K12 (ENSSTUG00000032545)	PCBP2 (ENSSTUG00000032405)	ENSSTUG00000032374
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00390000012257	ENSGT00940000154468.tb.a.d	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611.k	ENSGT00940000162210.c.b	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842.d	ENSGT00940000158853	ENSGT00390000015972.o.a	ENSGT00940000160254	ENSGT00390000018118.e	ENSGT00940000160455.b	ENSGT00940000176933	ENSGT00940000160663.b #22	ENSGT00390000018547	ENSGT00940000157086.b.j #24	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000165514.g	ENSGT00940000154697.a.b.xb	ENSGT01090000260040.b.a.b.z.b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000159006.c.a.a	ENSGT00940000154129.gd.a.a	ENSGT00940000157804.p
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00390000012257	ENSGT00940000154468.tb.a.d	ENSGT00940000156368.a	ENSGT00940000155740	ENSGT00940000160611.k	ENSGT00940000162210.c.b	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842.d	ENSGT00940000158853	ENSGT00390000015972.o.a	ENSGT00940000160254	ENSGT00390000018118.e	ENSGT00940000160455.b	ENSGT00940000176933	ENSGT00940000160663.b #22	ENSGT00390000018547	ENSGT00940000157086.b.j #24	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000165514.g	ENSGT00940000154697.a.b.xb	ENSGT01090000260040.b.a.b.z.b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000159006.c.a.a	ENSGT00940000154129.gd.a.a	ENSGT00940000157804.p
Coho salmon	MODERN SPECIES	25	si:ch211-15p9.2 (ENSOKIG00005027575)	nfs1 (ENSOKIG00005027582)	rbm12 (ENSOKIG00005027708)	cpne1 (ENSOKIG00005027718)	ENSOKIG00005027833	ENSOKIG00005028209	ENSOKIG00005028219	st3gal8 (ENSOKIG00005028238)	ENSOKIG00005028252	map1lc3a (ENSOKIG00005028264)	eif6 (ENSOKIG00005028279)	fam83c (ENSOKIG00005028304)	uqcc1 (ENSOKIG00005028321)	GDF5 (ENSOKIG00005028405)	ENSOKIG00005028408	ENSOKIG00005028428 #22	ENSOKIG00005028441	oser1 (ENSOKIG00005028445)	matn4 (ENSOKIG00005028465) #24	or90a1 (ENSOKIG00005028477)	ENSOKIG00005028488	ENSOKIG00005028493	KCNS1 (ENSOKIG00005028501) #30	ENSOKIG00005028590	cox6c (ENSOKIG00005029702)	tomm34 (ENSOKIG00005029718)	YWHAB (ENSOKIG00005029741) #34	RIMS4 (ENSOKIG00005029828) #35	ENSOKIG00005029851	MAP3K12 (ENSOKIG00005029888)	PCBP2 (ENSOKIG00005030528)
Chinook salmon	MODERN SPECIES	31	rbm39a (ENSOTSG00005026189)	ENSOTSG00005026190	si:ch211-15p9.2 (ENSOTSG00005026191)	nfs1 (ENSOTSG00005026192)	rbm12 (ENSOTSG00005026193)	cpne1 (ENSOTSG00005026194)	ENSOTSG00005026195	ENSOTSG00005026205	st3gal8 (ENSOTSG00005026206)	map1lc3a (ENSOTSG00005026207)	eif6 (ENSOTSG00005026211)	fam83c (ENSOTSG00005026212)	uqcc1 (ENSOTSG00005026213)	GDF5 (ENSOTSG00005026271)	ENSOTSG00005026272	ENSOTSG00005026275 #22	oser1 (ENSOTSG00005026277)	matn4 (ENSOTSG00005026279) #24	or90a1 (ENSOTSG00005026286)	ENSOTSG00005026289	KCNS1 (ENSOTSG00005026293) #30	ENSOTSG00005026299	cox6c (ENSOTSG00005028340)	tomm34 (ENSOTSG00005028341)	YWHAB (ENSOTSG00005028342) #34	RIMS4 (ENSOTSG00005028344) #35	ENSOTSG00005028345	MAP3K12 (ENSOTSG00005028346)	PCBP2 (ENSOTSG00005028349)	ENSOTSG00005028350	sp7 (ENSOTSG00005028351)
Rainbow trout	MODERN SPECIES	28	nfs1 (ENSOMYG00000005947)	rbm12 (ENSOMYG00000006162)	cpne1 (ENSOMYG00000006082)	ENSOMYG00000006449	ENSOMYG00000010315	ENSOMYG00000006650	ENSOMYG00000049729	st3gal8 (ENSOMYG00000006700)	ENSOMYG00000072310	map1lc3a (ENSOMYG00000006838)	eif6 (ENSOMYG00000006878)	ENSOMYG00000052862	fam83c (ENSOMYG00000058104)	uqcc1 (ENSOMYG00000007295)	GDF5 (ENSOMYG00000007493)	ENSOMYG00000007539 #22	ENSOMYG00000007558	oser1 (ENSOMYG00000007597)	matn4 (ENSOMYG00000007733) #24	ENSOMYG00000010389	KCNS1 (ENSOMYG00000010397) #30	ENSOMYG00000008787	ENSOMYG00000067213	cox6c (ENSOMYG00000010408)	ENSOMYG00000059090	tomm34 (ENSOMYG00000010429)	ywhaba (ENSOMYG00000010450) #34	ENSOMYG00000010465 #35	ENSOMYG00000055286	ENSOMYG00000010471	ENSOMYG00000068533
Huchen	MODERN SPECIES	211	si:ch211-15p9.2 (ENSHHUG00000002561)	nfs1 (ENSHHUG00000002564)	rbm12 (ENSHHUG00000002625)	ENSHHUG00000002626	ENSHHUG00000002644	ENSHHUG00000002658	ENSHHUG00000002676	st3gal8 (ENSHHUG00000002800)	map1lc3a (ENSHHUG00000002805)	eif6 (ENSHHUG00000002814)	fam83c (ENSHHUG00000002841)	uqcc1 (ENSHHUG00000002850)	ENSHHUG00000002862	GDF5 (ENSHHUG00000002878)	ENSHHUG00000002884	sdc4 (ENSHHUG00000002889) #22	oser1 (ENSHHUG00000002897)	ENSHHUG00000002913
Northern pike	MODERN SPECIES	16								dynlrb1 (ENSELUG00000014305)	EIF6 (ENSELUG00000030843)	ENSELUG00000014378	MMP24 (ENSELUG00000014430)	ENSELUG00000029908	ENSELUG00000024875	uqcc1 (ENSELUG00000014439)	GDF5 (ENSELUG00000030444)	sdc4 (ENSELUG00000024761) #22	oser1 (ENSELUG00000031563)	ENSELUG00000027052	matn4 (ENSELUG00000014678) #24	RBPJL (ENSELUG00000014753) #23	ENSELUG00000014775	KCNS1 (ENSELUG00000014788) #30	ENSELUG00000025602	ENSELUG00000026475	ENSELUG00000015008	cox6c (ENSELUG00000031848)	tomm34 (ENSELUG00000015048)	ENSELUG00000015055	YWHAB (ENSELUG00000026166) #34	RIMS4 (ENSELUG00000015103) #35	ENSELUG00000015111
Acanthomorphata	ANCESTRAL SPECIES	71	ENSGT00950000183156.a.b.b.b.b.b	ENSGT00940000155285.a	ENSGT00390000005315	ENSGT00530000063113.B	ENSGT00390000012445.b	ENSGT00940000157601	ENSGT00940000176173	ENSGT00390000011067.A	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000171658
Euacanthomorphacea	ANCESTRAL SPECIES	82	ENSGT00950000183156.a.b.b.b.b.b	ENSGT00940000155285.a	ENSGT00390000005315	ENSGT00530000063113.B	ENSGT00390000012445.b	ENSGT00940000157601	ENSGT00940000154258.a	ENSGT00390000011067.A	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000171658
Percomorphaceae	ANCESTRAL SPECIES	33	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000171658	ENSGT00940000178492	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b	ENSGT00390000003839.b
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864
Tetraodontidae	ANCESTRAL SPECIES	114							ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00950000183146.b.b
Fugu	MODERN SPECIES	10							smpd4 (ENSTRUG00000031978)	ENSTRUG00000026146	ENSTRUG00000026955	ENSTRUG00000000234	map1lc3a (ENSTRUG00000000118)	eif6 (ENSTRUG00000021424)	MMP24 (ENSTRUG00000028654)	fam83c (ENSTRUG00000031603)	uqcc1 (ENSTRUG00000025180)	ENSTRUG00000011119 #22	oser1 (ENSTRUG00000028871)	manf (ENSTRUG00000030999)	rbm15b (ENSTRUG00000030703)	dag1 (ENSTRUG00000002580)	nicn1 (ENSTRUG00000001121)	AMIGO3 (ENSTRUG00000025349)	pcif1 (ENSTRUG00000032944)	ENSTRUG00000026692	pltp (ENSTRUG00000003145)	ddx27 (ENSTRUG00000002089)	KCNQ2 (ENSTRUG00000000611)	ctsa (ENSTRUG00000000654)	ENSTRUG00000031402	ENSTRUG00000001553	snrpb (ENSTRUG00000023094)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000005895	USP48 (ENSTNIG00000005896)	or91a1 (ENSTNIG00000001548)	ENSTNIG00000005914	ENSTNIG00000005915	vars2 (ENSTNIG00000005916)	mgat1b (ENSTNIG00000000449)	polr1h (ENSTNIG00000005917)	ENSTNIG00000005919	ENSTNIG00000005921	ENSTNIG00000004488	ENSTNIG00000005923	ENSTNIG00000005930	ENSTNIG00000005981	ENSTNIG00000005931	SDC4 (ENSTNIG00000005934) #22	ENSTNIG00000005935	ENSTNIG00000005937	ENSTNIG00000005938	ENSTNIG00000000850	nadk2 (ENSTNIG00000005940)	ENSTNIG00000005941	ENSTNIG00000005942	ENSTNIG00000005944	ENSTNIG00000005945	ENSTNIG00000005946	ENSTNIG00000005948	ENSTNIG00000005949	ENSTNIG00000005950	ENSTNIG00000005952	ENSTNIG00000005953
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864
Ballan wrasse	MODERN SPECIES	1532																sdc4 (ENSLBEG00000015828) #22
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864
Perciformes	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.b.a.a.a.a.a.b	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Perciformes_a	ANCESTRAL SPECIES	41	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00970000193381.b	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000001242	KCNS1 (ENSCGOG00000001458) #30	or90a1 (ENSCGOG00000001464)	ENSCGOG00000001468	ENSCGOG00000001473	ENSCGOG00000001477	matn4 (ENSCGOG00000001482) #24	RBPJL (ENSCGOG00000001485) #23	DCAF1 (ENSCGOG00000001505)	smpd4 (ENSCGOG00000001730)	ENSCGOG00000002071	GDF5 (ENSCGOG00000002074)	ENSCGOG00000002088	ENSCGOG00000002091	ENSCGOG00000002095	sdc4 (ENSCGOG00000002101) #22	manf (ENSCGOG00000002103)	oser1 (ENSCGOG00000002104)	ENSCGOG00000002105	dag1 (ENSCGOG00000002107)	ENSCGOG00000002112	nicn1 (ENSCGOG00000002116)	ENSCGOG00000002121	GRM7 (ENSCGOG00000002126)	ENSCGOG00000002128	ENSCGOG00000002129	ENSCGOG00000002131
Pike perch	MODERN SPECIES	227				fam83c (ENSSLUG00000003474)	uqcc1 (ENSSLUG00000003491)	ENSSLUG00000003512	ENSSLUG00000003519	GDF5 (ENSSLUG00000003535)	ENSSLUG00000003559	ENSSLUG00000003567	ENSSLUG00000003573	ENSSLUG00000003580	ENSSLUG00000003584	ENSSLUG00000003588	ENSSLUG00000003596	sdc4 (ENSSLUG00000003603) #22	ENSSLUG00000003607	ENSSLUG00000003617	ENSSLUG00000003632	birc2 (ENSSLUG00000003651)	oser1 (ENSSLUG00000003662)	manf (ENSSLUG00000003666)	rbm15b (ENSSLUG00000003676)
Eupecaria_C	ANCESTRAL SPECIES	41				ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Gilthead seabream	MODERN SPECIES	20	ENSSAUG00010018777	ENSSAUG00010018776	DCAF1 (ENSSAUG00010014825)	ENSSAUG00010014782	smpd4 (ENSSAUG00010014690)	ENSSAUG00010014114	ENSSAUG00010014097	ENSSAUG00010014094	map1lc3a (ENSSAUG00010014091)	eif6 (ENSSAUG00010014089)	MMP24 (ENSSAUG00010014083)	ENSSAUG00010014080	ENSSAUG00010014079	ENSSAUG00010014076	ENSSAUG00010014074	sdc4 (ENSSAUG00010014071) #22	ENSSAUG00010014069	ENSSAUG00010014065	ENSSAUG00010014063	ENSSAUG00010014058	ENSSAUG00010014056	GDF5 (ENSSAUG00010014052)	CBP3 (ENSSAUG00010013999)	fam83c (ENSSAUG00010013980)	oser1 (ENSSAUG00010013975)	manf (ENSSAUG00010013973)	ENSSAUG00010013972	rbm15b (ENSSAUG00010013970)	ENSSAUG00010013969	ENSSAUG00010013957	ENSSAUG00010013952
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	47						ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Large yellow croaker	MODERN SPECIES	478	smpd4 (ENSLCRG00005004967)	ENSLCRG00005004939	ENSLCRG00005004933	ENSLCRG00005004932	map1lc3a (ENSLCRG00005004922)	ENSLCRG00005004921	EIF6 (ENSLCRG00005004917)	MMP24 (ENSLCRG00005004812)	ENSLCRG00005004809	ENSLCRG00005004808	fam83c (ENSLCRG00005004805)	uqcc1 (ENSLCRG00005004804)	GDF5 (ENSLCRG00005004801)	ENSLCRG00005004800	ENSLCRG00005004799	SDC4 (ENSLCRG00005004798) #22	oser1 (ENSLCRG00005004797)	ENSLCRG00005004796	rbm15b (ENSLCRG00005004794)	manf (ENSLCRG00005004793)	pcbp4 (ENSLCRG00005004788)	dag1 (ENSLCRG00005004787)	ENSLCRG00005004784	ENSLCRG00005004781	ENSLCRG00005004778	nicn1 (ENSLCRG00005004775)	ENSLCRG00005004770	GRM7 (ENSLCRG00005004674)	ENSLCRG00005004672	ENSLCRG00005004671	mkrn2 (ENSLCRG00005004669)
European seabass	MODERN SPECIES	10	ENSDLAG00005033996	ppp1r11 (ENSDLAG00005033120)	vars2 (ENSDLAG00005020741)	ENSDLAG00005020833	ENSDLAG00005021153	ENSDLAG00005026726	ENSDLAG00005030430	ENSDLAG00005034670	ENSDLAG00005034117	ENSDLAG00005027653	ENSDLAG00005032192	ENSDLAG00005029680	ENSDLAG00005033760	ENSDLAG00005032446	ENSDLAG00005027215	ENSDLAG00005027533 #22	ENSDLAG00005026913	ENSDLAG00005013997	manf (ENSDLAG00005013998)	rbm15b (ENSDLAG00005027466)	ENSDLAG00005030138	pcbp4 (ENSDLAG00005003946)	ENSDLAG00005034313	ENSDLAG00005004451	nicn1 (ENSDLAG00005004421)	ENSDLAG00005030046	ENSDLAG00005005280	ENSDLAG00005030025	ENSDLAG00005025272	ENSDLAG00005025254	ENSDLAG00005025241
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT01100000263864	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Anabantaria	ANCESTRAL SPECIES		ENSGT00390000005197.b #23	ENSGT01100000263864	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00390000011067.A	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT01100000263864	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a
Climbing perch	MODERN SPECIES	18	ENSATEG00000029701	ENSATEG00000007787	ENSATEG00000008011	ENSATEG00000008056	ENSATEG00000008153	ENSATEG00000008161	ENSATEG00000008170	ENSATEG00000008188	eif6 (ENSATEG00000008205)	ENSATEG00000008260	ENSATEG00000008274	ENSATEG00000008320	fam83c (ENSATEG00000008410)	uqcc1 (ENSATEG00000008423)	GDF5 (ENSATEG00000008437)	ENSATEG00000029338 #22	ENSATEG00000008479	manf (ENSATEG00000027289)	ENSATEG00000026385	ENSATEG00000028805	pcbp4 (ENSATEG00000008529)	ENSATEG00000008577	ENSATEG00000008680	ENSATEG00000025280	ENSATEG00000008720	ENSATEG00000008739	ENSATEG00000008775	ENSATEG00000026741	ENSATEG00000008817	ENSATEG00000009115	ENSATEG00000009148
Siamese fighting fish	MODERN SPECIES	16	KCNS1 (ENSBSLG00000017714) #30	ENSBSLG00000017777	cox6c (ENSBSLG00000017952)	DCAF1 (ENSBSLG00000000641)	smpd4 (ENSBSLG00000000872)	ENSBSLG00000000882	SSUH2 (ENSBSLG00000000890)	ENSBSLG00000000892	map1lc3a (ENSBSLG00000000893)	eif6 (ENSBSLG00000000895)	MMP24 (ENSBSLG00000001270)	fam83c (ENSBSLG00000001335)	uqcc1 (ENSBSLG00000001340)	ENSBSLG00000001350	GDF5 (ENSBSLG00000001363)	ENSBSLG00000001376 #22	oser1 (ENSBSLG00000001381)	manf (ENSBSLG00000001389)	rbm15b (ENSBSLG00000001399)	pcbp4 (ENSBSLG00000001408)	pcbp4 (ENSBSLG00000001415)	dag1 (ENSBSLG00000001431)	nicn1 (ENSBSLG00000001438)	GRM7 (ENSBSLG00000001476)	AMIGO3 (ENSBSLG00000002132)	aldh4a1 (ENSBSLG00000002311)	ASCL5 (ENSBSLG00000002744)	ENSBSLG00000002751	PIK3C2B (ENSBSLG00000002809)	FAM107A (ENSBSLG00000003040)	ENSBSLG00000003042
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000026443	ENSMAMG00000000902	ENSMAMG00000010746	ENSMAMG00000010673	ENSMAMG00000010620	ENSMAMG00000010605	ENSMAMG00000010585	ENSMAMG00000010567	ENSMAMG00000010557	eif6 (ENSMAMG00000010546)	ENSMAMG00000010362	ENSMAMG00000022357	fam83c (ENSMAMG00000010316)	uqcc1 (ENSMAMG00000010263)	GDF5 (ENSMAMG00000010238)	ENSMAMG00000026870 #22	ENSMAMG00000010228	manf (ENSMAMG00000010216)	ENSMAMG00000010212	pcbp4 (ENSMAMG00000010163)	ENSMAMG00000010144	nicn1 (ENSMAMG00000028280)	ENSMAMG00000010098	ENSMAMG00000010071	ENSMAMG00000010042	ENSMAMG00000010034	ENSMAMG00000010030	ENSMAMG00000009949	ENSMAMG00000027797	ENSMAMG00000028140	ENSMAMG00000009874
Carangaria	ANCESTRAL SPECIES	3	ENSGT00390000005197.b #23	ENSGT01100000263864	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000163190.h.a.b	ENSGT00940000163190.g.a
Pleuronectoidei	ANCESTRAL SPECIES	31	ENSGT00940000161337.a.a.b.a.a.a.a.a.a	ENSGT00940000161337.a.a.b.a.a.a.a.a.b	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00940000163190.h.a.b	ENSGT00560000077335	ENSGT00940000154404.b	ENSGT00940000158263
Turbot	MODERN SPECIES	18	ENSSMAG00000022188	ENSSMAG00000004873	ENSSMAG00000023083	ENSSMAG00000022119	ENSSMAG00000005128	ENSSMAG00000005206	ENSSMAG00000005293	ENSSMAG00000005626	ENSSMAG00000005648	ENSSMAG00000025417	EIF6 (ENSSMAG00000005666)	ENSSMAG00000005694	fam83c (ENSSMAG00000005791)	uqcc1 (ENSSMAG00000005727)	GDF5 (ENSSMAG00000005743)	ENSSMAG00000027321 #22	manf (ENSSMAG00000030816)	ENSSMAG00000035079	pcbp4 (ENSSMAG00000005827)	ENSSMAG00000005893	ENSSMAG00000034605	ENSSMAG00000027780	ENSSMAG00000025744	ENSSMAG00000022100	nicn1 (ENSSMAG00000005914)	ENSSMAG00000005933	ENSSMAG00000005990	ENSSMAG00000006132	ENSSMAG00000023613	ENSSMAG00000024919	ENSSMAG00000006159
Tongue sole	MODERN SPECIES	2	ENSCSEG00000005826	CIT (ENSCSEG00000005807)	ENSCSEG00000005794	ENSCSEG00000005790	pxna (ENSCSEG00000005779)	ENSCSEG00000005776	rplp0 (ENSCSEG00000005766)	golga7 (ENSCSEG00000005757)	ENSCSEG00000005748	loxl2a (ENSCSEG00000005731)	SLC2A9 (ENSCSEG00000005718)	ENSCSEG00000005698	MX1 (ENSCSEG00000005684)	uqcc1 (ENSCSEG00000005670)	GDF5 (ENSCSEG00000005659)	sdc4 (ENSCSEG00000005655) #22	ENSCSEG00000005648	manf (ENSCSEG00000005638)	thoc7 (ENSCSEG00000005643)	ATXN7 (ENSCSEG00000005630)	psmd6 (ENSCSEG00000005618)	slc2a9l1 (ENSCSEG00000005612)	prickle2b (ENSCSEG00000005598)	ADAMTS9 (ENSCSEG00000005567)	magi1b (ENSCSEG00000005521)	slc25a26 (ENSCSEG00000005495)	LRIG1 (ENSCSEG00000005477)	kbtbd8 (ENSCSEG00000005469)	ENSCSEG00000005466	suclg2 (ENSCSEG00000005450)	mxra8a (ENSCSEG00000005443)
Carangaria_A	ANCESTRAL SPECIES	80			ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163190.h.a.b	ENSGT00940000163190.g.a
Seriola	ANCESTRAL SPECIES	69			ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000010760.e.a	ENSGT00940000154856.A.b.e.b	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.b.b.c.b.b.a.a.b	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163190.h.a.b.`b	ENSGT00940000163190.h.a.b.ab
Greater amberjack	MODERN SPECIES	25				DCAF1 (ENSSDUG00000017352)	smpd4 (ENSSDUG00000017390)	ENSSDUG00000017430	ENSSDUG00000017467	ENSSDUG00000017486	MAP1LC3A (ENSSDUG00000017497)	eif6 (ENSSDUG00000017507)	MMP24 (ENSSDUG00000017535)	fam83c (ENSSDUG00000017583)	uqcc1 (ENSSDUG00000017608)	GDF5 (ENSSDUG00000017642)	ENSSDUG00000017667	ENSSDUG00000017673 #22	oser1 (ENSSDUG00000017683)	manf (ENSSDUG00000017693)	rbm15b (ENSSDUG00000017706)	pcbp4 (ENSSDUG00000017719)	dag1 (ENSSDUG00000017738)	ENSSDUG00000017755	ENSSDUG00000017791	nicn1 (ENSSDUG00000017805)	GRM7 (ENSSDUG00000017828)	ENSSDUG00000017862	RNF123 (ENSSDUG00000017867)	AMIGO3 (ENSSDUG00000017937)	aldh4a1 (ENSSDUG00000017947)	ENSSDUG00000017981	ENSSDUG00000017993
Yellowtail amberjack	MODERN SPECIES	3220							ENSSLDG00000011407	ENSSLDG00000011455	MAP1LC3A (ENSSLDG00000011467)	eif6 (ENSSLDG00000011486)	MMP24 (ENSSLDG00000011507)	fam83c (ENSSLDG00000011527)	uqcc1 (ENSSLDG00000011542)	GDF5 (ENSSLDG00000011564)	ENSSLDG00000011576	sdc4 (ENSSLDG00000011585) #22	oser1 (ENSSLDG00000011598)	manf (ENSSLDG00000011611)	rbm15b (ENSSLDG00000011629)
Barramundi perch	MODERN SPECIES	334		DOCK3 (ENSLCAG00010026325)	ENSLCAG00010002316	DCAF1 (ENSLCAG00010002347)	smpd4 (ENSLCAG00010002425)	ENSLCAG00010002449	ENSLCAG00010002453	ENSLCAG00010002455	dynlrb1 (ENSLCAG00010002464)	map1lc3a (ENSLCAG00010002481)	eif6 (ENSLCAG00010002485)	MMP24 (ENSLCAG00010002489)	fam83c (ENSLCAG00010002492)	uqcc1 (ENSLCAG00010002502)	GDF5 (ENSLCAG00010002518)	sdc4 (ENSLCAG00010002524) #22	oser1 (ENSLCAG00010002528)	manf (ENSLCAG00010002529)	ENSLCAG00010002531
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Atherinomorphae	ANCESTRAL SPECIES	29	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT01100000263518.B.b.a.b	ENSGT00940000154527.a.a.a	ENSGT00390000006044	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a
Aplocheiloidei	ANCESTRAL SPECIES	91	ENSGT00940000165085	ENSGT00390000006044	ENSGT00940000154527.a.a.a	ENSGT01100000263518.B.b.a.b	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.c	ENSGT01030000234648.a.a.c.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b
Turquoise killifish	MODERN SPECIES	1619	cenpp (ENSNFUG00015005928)	OGN (ENSNFUG00015005935)	aspn (ENSNFUG00015005940)	ENSNFUG00015005949	ENSNFUG00015005950	ECM2 (ENSNFUG00015005956)	ENSNFUG00015005966	IPPK (ENSNFUG00015005972)	dynlrb1 (ENSNFUG00015005981)	map1lc3a (ENSNFUG00015005990)	EIF6 (ENSNFUG00015006013)	fam83c (ENSNFUG00015006022)	uqcc1 (ENSNFUG00015006027)	ENSNFUG00015006034	GDF5 (ENSNFUG00015006038)	sdc4 (ENSNFUG00015006050) #22	C6H20ORF111 (ENSNFUG00015006057)	MANF (ENSNFUG00015006067)	RBM15B (ENSNFUG00015006075)	pcbp4 (ENSNFUG00015006082)	DAG1 (ENSNFUG00015006093)	NICN1 (ENSNFUG00015006099)	GPR4 (ENSNFUG00015006183)	GRM7 (ENSNFUG00015006254)	RNF123 (ENSNFUG00015006669)	ENSNFUG00015006739	AMIGO3 (ENSNFUG00015006745)	ALDH4A1 (ENSNFUG00015006811)	ASCL5 (ENSNFUG00015007429)	ENSNFUG00015007435	polr2j (ENSNFUG00015007439)
Mangrove rivulus	MODERN SPECIES	1524																SDC4 (ENSKMAG00000005019) #22
Cyprinodontoidei	ANCESTRAL SPECIES	46	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a
NAME_4	ANCESTRAL SPECIES	378													ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561
Sheepshead minnow	MODERN SPECIES	312								ENSCVAG00000018652	ENSCVAG00000018704	ENSCVAG00000018721	DYNLRB1 (ENSCVAG00000018727)	uqcc1 (ENSCVAG00000018807)	ENSCVAG00000018846	GDF5 (ENSCVAG00000018853)	ENSCVAG00000018877	sdc4 (ENSCVAG00000018887) #22	oser1 (ENSCVAG00000018893)	manf (ENSCVAG00000018909)	rbm15b (ENSCVAG00000018913)	pole4 (ENSCVAG00000018925)	ENSCVAG00000018927	ccl25b (ENSCVAG00000018938)	gclm (ENSCVAG00000000496)	dnttip2 (ENSCVAG00000000497)	ENSCVAG00000018997	ENSCVAG00000019006	bend5 (ENSCVAG00000019014)	AGBL4 (ENSCVAG00000019024)	elavl4 (ENSCVAG00000019080)
Mummichog	MODERN SPECIES	587																sdc4 (ENSFHEG00000012466) #22	manf (ENSFHEG00000012477)	ENSFHEG00000012512	ENSFHEG00000012524	pcbp4 (ENSFHEG00000012545)	ENSFHEG00000012556
Poeciliinae	ANCESTRAL SPECIES	31	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00390000010053	ENSGT00390000011067.C.g	ENSGT00390000011067.C.h	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.b	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g.c	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.a.a	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a
Poecilia	ANCESTRAL SPECIES	25	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00390000010053	ENSGT00390000011067.C.g	ENSGT00390000011067.C.h	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.b	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.a.b.b	ENSGT00940000159711.g.c	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b
NAME_6	ANCESTRAL SPECIES	221	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00390000010053	ENSGT00390000011067.C.g	ENSGT00390000011067.C.h	ENSGT00940000158853	ENSGT00390000015972	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.b.b	ENSGT00940000158315	ENSGT00940000160254	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.a.b.a.c.a	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.a.b.b.a	ENSGT00940000159711.g.c
Sailfin molly	MODERN SPECIES	775	ABHD6 (ENSPLAG00000022775)	ENSPLAG00000022792	ippk (ENSPLAG00000022803)	ENSPLAG00000022829	ENSPLAG00000022836	map1lc3a (ENSPLAG00000022850)	eif6 (ENSPLAG00000022868)	ENSPLAG00000022885	MMP24 (ENSPLAG00000023084)	fam83c (ENSPLAG00000023095)	ENSPLAG00000023104	uqcc1 (ENSPLAG00000023107)	ENSPLAG00000023137	GDF5 (ENSPLAG00000023168)	ENSPLAG00000023180	sdc4 (ENSPLAG00000023192) #22	oser1 (ENSPLAG00000023201)	manf (ENSPLAG00000023203)	rbm15b (ENSPLAG00000023231)	ENSPLAG00000023242	ENSPLAG00000023258	ENSPLAG00000023275	ENSPLAG00000023289	pcbp4 (ENSPLAG00000023316)
Amazon molly	MODERN SPECIES	615	GPR37L1 (ENSPFOG00000015430)	atp2b4 (ENSPFOG00000015077)	HTD2 (ENSPFOG00000015044)	rpp14 (ENSPFOG00000015042)	ABHD6 (ENSPFOG00000014994)	ippk (ENSPFOG00000014926)	ENSPFOG00000014909	map1lc3a (ENSPFOG00000014880)	eif6 (ENSPFOG00000014847)	ENSPFOG00000014840	MMP24 (ENSPFOG00000014685)	fam83c (ENSPFOG00000014676)	ENSPFOG00000020619	uqcc1 (ENSPFOG00000014629)	GDF5 (ENSPFOG00000014612)	sdc4 (ENSPFOG00000014599) #22	oser1 (ENSPFOG00000014590)	manf (ENSPFOG00000022227)	rbm15b (ENSPFOG00000014574)	ENSPFOG00000014570	pcbp4 (ENSPFOG00000014474)
Guppy	MODERN SPECIES	457	rpp14 (ENSPREG00000021863)	ABHD6 (ENSPREG00000021848)	ippk (ENSPREG00000021831)	ENSPREG00000021812	ENSPREG00000021752	map1lc3a (ENSPREG00000021729)	ENSPREG00000021722	eif6 (ENSPREG00000021707)	ENSPREG00000021698	MMP24 (ENSPREG00000021681)	fam83c (ENSPREG00000021668)	uqcc1 (ENSPREG00000021654)	ENSPREG00000021640	GDF5 (ENSPREG00000021631)	ENSPREG00000021622	sdc4 (ENSPREG00000021611) #22	oser1 (ENSPREG00000021592)	manf (ENSPREG00000021567)	ENSPREG00000021550	ENSPREG00000021537	ENSPREG00000021514	pcbp4 (ENSPREG00000021498)	dag1 (ENSPREG00000021495)	ENSPREG00000021479	ENSPREG00000021473	nicn1 (ENSPREG00000021466)	ENSPREG00000021456	ENSPREG00000021448	ENSPREG00000021445	GRM7 (ENSPREG00000021434)	ENSPREG00000021406
Platyfish	MODERN SPECIES	43																sdc4 (ENSXMAG00000028307) #22	oser1 (ENSXMAG00000025191)	manf (ENSXMAG00000012204)	rbm15b (ENSXMAG00000012197)	ENSXMAG00000023893	pcbp4 (ENSXMAG00000022188)
Oryzias	ANCESTRAL SPECIES	59	ENSGT00940000157444	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT01100000263518.B.b.a.b	ENSGT00940000154527.a.a.a	ENSGT00390000006044	ENSGT00940000165085	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309.g	ENSGT00940000156326.a.b	ENSGT00940000179841	ENSGT00390000009678	ENSGT00940000158813	ENSGT01050000244824.F	ENSGT00730000111323	ENSGT00390000014105	ENSGT00940000153717.a.b
Oryzias_b	ANCESTRAL SPECIES	65	ENSGT00940000157238.a	ENSGT00390000004860	ENSGT01100000263518.B.b.a.b	ENSGT00940000154527.a.a.a	ENSGT00390000006044	ENSGT00940000169219	ENSGT00940000166905	ENSGT00940000165085	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309.g	ENSGT00940000156326.a.b	ENSGT00940000179841	ENSGT00390000009678	ENSGT00940000158813	ENSGT01050000244824.F	ENSGT00730000111323	ENSGT00390000014105	ENSGT00940000153717.a.b
Indian medaka	MODERN SPECIES	8	aspn (ENSOMEG00000003935)	ogna (ENSOMEG00000003922)	nol8 (ENSOMEG00000003904)	GPR37L1 (ENSOMEG00000003849)	atp2b4 (ENSOMEG00000003825)	ENSOMEG00000003766	ENSOMEG00000003762	ENSOMEG00000003747	map1lc3a (ENSOMEG00000003708)	eif6 (ENSOMEG00000003690)	MMP24 (ENSOMEG00000003660)	fam83c (ENSOMEG00000003633)	uqcc1 (ENSOMEG00000000077)	GDF5 (ENSOMEG00000003585)	ENSOMEG00000003580	ENSOMEG00000003570 #22	oser1 (ENSOMEG00000003557)	manf (ENSOMEG00000003547)	rbm15b (ENSOMEG00000000801)	pcbp4 (ENSOMEG00000003516)	foxp1b (ENSOMEG00000003447)	ENSOMEG00000003410	zgc:113054 (ENSOMEG00000003392)	mitfa (ENSOMEG00000003364)	trnt1 (ENSOMEG00000003331)	ENSOMEG00000003313	lmcd1 (ENSOMEG00000003298)	mcm2 (ENSOMEG00000003267)	blcap (ENSOMEG00000003240)	ENSOMEG00000003225	ENSOMEG00000003185
Javanese ricefish	MODERN SPECIES	19	cenpp (ENSOJAG00000015901)	GPR37L1 (ENSOJAG00000015892)	atp2b4 (ENSOJAG00000015358)	ENSOJAG00000015335	smpd4 (ENSOJAG00000015022)	ENSOJAG00000014990	ENSOJAG00000014689	map1lc3a (ENSOJAG00000014608)	EIF6 (ENSOJAG00000014597)	MMP24 (ENSOJAG00000014335)	ENSOJAG00000014318	fam83c (ENSOJAG00000014309)	ENSOJAG00000014303	uqcc1 (ENSOJAG00000014281)	GDF5 (ENSOJAG00000014091)	ENSOJAG00000014050 #22	ENSOJAG00000014036	oser1 (ENSOJAG00000014028)	manf (ENSOJAG00000013993)	rbm15b (ENSOJAG00000013963)	pcbp4 (ENSOJAG00000013952)	foxp1b (ENSOJAG00000013255)	ENSOJAG00000013209	zgc:113054 (ENSOJAG00000013194)	mitfa (ENSOJAG00000012917)	ENSOJAG00000012889	trnt1 (ENSOJAG00000012818)	ENSOJAG00000012786	lmcd1 (ENSOJAG00000012611)	ENSOJAG00000011766	blcap (ENSOJAG00000011763)
Oryzias_a	ANCESTRAL SPECIES	94						ENSGT00940000154527.a.a.a	ENSGT00390000006044	ENSGT00940000165085	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00940000165920.b	ENSGT00940000165309.g	ENSGT00940000156326.a.b	ENSGT00940000179841	ENSGT00390000009678	ENSGT00940000158813	ENSGT01050000244824.F	ENSGT00730000111323	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000030194	qrich1 (ENSORLG00000002740)	rpusd4 (ENSORLG00000002750)	GPR37L1 (ENSORLG00000026062)	ENSORLG00000025672	ENSORLG00000023235	smpd4 (ENSORLG00000002821)	ENSORLG00000002866	map1lc3a (ENSORLG00000024693)	eif6 (ENSORLG00000002910)	mmp24 (ENSORLG00000002945)	fam83c (ENSORLG00000002950)	uqcc1 (ENSORLG00000002962)	GDF5 (ENSORLG00000029983)	ENSORLG00000029409	sdc4 (ENSORLG00000002981) #22	ENSORLG00000029730	ENSORLG00000029294	oser1 (ENSORLG00000025333)	manf (ENSORLG00000028270)	rbm15b (ENSORLG00000025754)	pcbp4 (ENSORLG00000003061)	foxp1b (ENSORLG00000003081)	zgc:113054 (ENSORLG00000003095)	ENSORLG00000023023	ENSORLG00000029419	mitfa (ENSORLG00000003123)	ENSORLG00000022242	ENSORLG00000022697	ENSORLG00000003143	trnt1 (ENSORLG00000003165)
Chinese medaka	MODERN SPECIES	1057													MMP24 (ENSOSIG00000005672)	fam83c (ENSOSIG00000005665)	GDF5 (ENSOSIG00000005662)	sdc4 (ENSOSIG00000005659) #22
Ovalentaria_B	ANCESTRAL SPECIES	30	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234583.a.a.c.b.a.a.b.a.b.a.b	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00940000171658	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b
Cichlidae	ANCESTRAL SPECIES	39	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT01090000262945	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b	ENSGT01030000234648.a.a.c.a	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00390000005197.b #23	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT01100000263718	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	50		ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT01100000263718	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Haplochromini	ANCESTRAL SPECIES	55	ENSGT00940000164100.A.c.a.d.a.b.a.a	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT01100000263718	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Haplochromini_A	ANCESTRAL SPECIES	61	ENSGT00940000164100.A.c.a.d.a.b.a.a	ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT01100000263718	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
P. nyererei	MODERN SPECIES	400	DOCK3 (ENSPNYG00000019691)	DCAF1 (ENSPNYG00000019534)	ENSPNYG00000019512	ENSPNYG00000019497	ENSPNYG00000019478	ENSPNYG00000019456	ENSPNYG00000019451	map1lc3a (ENSPNYG00000019429)	eif6 (ENSPNYG00000019419)	MMP24 (ENSPNYG00000019404)	fam83c (ENSPNYG00000019386)	uqcc1 (ENSPNYG00000019361)	ENSPNYG00000019338	GDF5 (ENSPNYG00000019328)	ENSPNYG00000019314	sdc4 (ENSPNYG00000019303) #22	oser1 (ENSPNYG00000019292)	manf (ENSPNYG00000019280)	rbm15b (ENSPNYG00000019263)	pcbp4 (ENSPNYG00000019234)	ENSPNYG00000019223	dag1 (ENSPNYG00000019196)	nicn1 (ENSPNYG00000019176)	ENSPNYG00000019161	ENSPNYG00000019124	GRM7 (ENSPNYG00000019092)	ENSPNYG00000019076	AMIGO3 (ENSPNYG00000019066)	RNF123 (ENSPNYG00000018891)	aldh4a1 (ENSPNYG00000018832)	ASCL5 (ENSPNYG00000018810)
Haplochromini_B	ANCESTRAL SPECIES	74		ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT01100000263718	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.c	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.a.a.a.b.a.b.d	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263
Eastern happy	MODERN SPECIES	17	DOCK3 (ENSACLG00000012292)	DCAF1 (ENSACLG00000012501)	smpd4 (ENSACLG00000012687)	ENSACLG00000013114	ENSACLG00000013255	ENSACLG00000013259	dynlrb2 (ENSACLG00000013268)	map1lc3a (ENSACLG00000013273)	eif6 (ENSACLG00000013278)	MMP24 (ENSACLG00000013284)	fam83c (ENSACLG00000013293)	uqcc1 (ENSACLG00000013297)	GDF5 (ENSACLG00000013302)	ENSACLG00000013329	ENSACLG00000013332	sdc4 (ENSACLG00000013335) #22	oser1 (ENSACLG00000013344)	manf (ENSACLG00000013345)	rbm15b (ENSACLG00000013346)	pcbp4 (ENSACLG00000013348)	dag1 (ENSACLG00000013364)	ENSACLG00000013376	ENSACLG00000013525	nicn1 (ENSACLG00000013534)	ENSACLG00000013707	GRM7 (ENSACLG00000013783)	ENSACLG00000013886	ENSACLG00000013891	ENSACLG00000013900	RNF123 (ENSACLG00000013912)	AMIGO3 (ENSACLG00000014028)
Zebra mbuna	MODERN SPECIES	1108	DCAF1 (ENSMZEG00005009371)	smpd4 (ENSMZEG00005009303)	ENSMZEG00005009194	ENSMZEG00005009154	dynlrb2 (ENSMZEG00005009143)	map1lc3a (ENSMZEG00005009135)	eif6 (ENSMZEG00005009111)	MMP24 (ENSMZEG00005009099)	ENSMZEG00005009085	ENSMZEG00005009074	fam83c (ENSMZEG00005009063)	uqcc1 (ENSMZEG00005009031)	ENSMZEG00005009021	GDF5 (ENSMZEG00005008996)	ENSMZEG00005008980	sdc4 (ENSMZEG00005008973) #22	oser1 (ENSMZEG00005008960)	manf (ENSMZEG00005008940)	rbm15b (ENSMZEG00005008925)	ENSMZEG00005008917	ENSMZEG00005008904	pcbp4 (ENSMZEG00005008852)	khk (ENSMZEG00005008809)	pltp (ENSMZEG00005008780)	ddx27 (ENSMZEG00005008750)	KCNQ2 (ENSMZEG00005008656)	ENSMZEG00005008626	ASCL5 (ENSMZEG00005008611)	aldh4a1 (ENSMZEG00005008572)	AMIGO3 (ENSMZEG00005008553)	RNF123 (ENSMZEG00005008522)
Burton s mouthbrooder	MODERN SPECIES	370	DOCK3 (ENSHBUG00000010234)	ENSHBUG00000010103	DCAF1 (ENSHBUG00000010069)	smpd4 (ENSHBUG00000009917)	ENSHBUG00000009826	ENSHBUG00000009816	ENSHBUG00000009806	DYNLRB1 (ENSHBUG00000009786)	map1lc3a (ENSHBUG00000009767)	eif6 (ENSHBUG00000009758)	MMP24 (ENSHBUG00000009728)	fam83c (ENSHBUG00000009655)	uqcc1 (ENSHBUG00000009622)	GDF5 (ENSHBUG00000009615)	ENSHBUG00000009528	sdc4 (ENSHBUG00000009515) #22	oser1 (ENSHBUG00000009507)	manf (ENSHBUG00000009497)	rbm15b (ENSHBUG00000009487)	pcbp4 (ENSHBUG00000009472)	dag1 (ENSHBUG00000009448)	nicn1 (ENSHBUG00000009420)	ENSHBUG00000009409
Lyretail cichlid	MODERN SPECIES	374	ENSNBRG00000008689	DOCK3 (ENSNBRG00000008455)	DCAF1 (ENSNBRG00000008246)	smpd4 (ENSNBRG00000008004)	ENSNBRG00000007949	ENSNBRG00000007849	map1lc3a (ENSNBRG00000007815)	map1lc3a (ENSNBRG00000007797)	eif6 (ENSNBRG00000007765)	MMP24 (ENSNBRG00000007670)	uqcc1 (ENSNBRG00000007619)	ENSNBRG00000007604	GDF5 (ENSNBRG00000007588)	ENSNBRG00000007566	ENSNBRG00000007560	ENSNBRG00000007553 #22	oser1 (ENSNBRG00000007545)	manf (ENSNBRG00000007537)	rbm15b (ENSNBRG00000007512)	pcbp4 (ENSNBRG00000007475)	dag1 (ENSNBRG00000007446)	ENSNBRG00000007394	ENSNBRG00000007381	ENSNBRG00000007377	ENSNBRG00000007363	AMIGO3 (ENSNBRG00000007350)	ENSNBRG00000007338	aldh4a1 (ENSNBRG00000007308)	ENSNBRG00000007286	ENSNBRG00000007273	PIK3C2B (ENSNBRG00000007196)
Nile tilapia	MODERN SPECIES	17	ENSONIG00000034818	DOCK3 (ENSONIG00000004468)	DCAF1 (ENSONIG00000004465)	smpd4 (ENSONIG00000004460)	ENSONIG00000004442	ENSONIG00000018568	ENSONIG00000030306	map1lc3a (ENSONIG00000041846)	eif6 (ENSONIG00000018566)	MMP24 (ENSONIG00000018565)	fam83c (ENSONIG00000018564)	ENSONIG00000029524	uqcc1 (ENSONIG00000018561)	gdf5 (ENSONIG00000038003)	ENSONIG00000035143	sdc4 (ENSONIG00000018558) #22	oser1 (ENSONIG00000018557)	manf (ENSONIG00000018556)	rbm15b (ENSONIG00000029596)	ENSONIG00000034637	pcbp4 (ENSONIG00000018552)	ENSONIG00000039817	dag1 (ENSONIG00000018551)	ENSONIG00000006777	ENSONIG00000034183	nicn1 (ENSONIG00000018549)	ENSONIG00000032897	ENSONIG00000028696	ENSONIG00000033125	GRM7 (ENSONIG00000000308)	ENSONIG00000035000
Midas cichlid	MODERN SPECIES	450												fam83c (ENSACIG00000015685)	uqcc1 (ENSACIG00000015455)	ENSACIG00000015424	GDF5 (ENSACIG00000015408)	sdc4 (ENSACIG00000015387) #22	oser1 (ENSACIG00000015371)	manf (ENSACIG00000015312)	ENSACIG00000015302	rbm15b (ENSACIG00000015295)	pcbp4 (ENSACIG00000015264)
Pomacentridae	ANCESTRAL SPECIES	154			ENSGT00940000155514.c	ENSGT00390000005874.j	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234583.a.a.c.b.a.a.b.a.b.a.b
Bicolor damselfish	MODERN SPECIES	432			ENSSPAG00000018275	DOCK3 (ENSSPAG00000018151)	DCAF1 (ENSSPAG00000018069)	smpd4 (ENSSPAG00000017904)	ENSSPAG00000017852	ENSSPAG00000017832	map1lc3a (ENSSPAG00000017817)	eif6 (ENSSPAG00000017796)	MMP24 (ENSSPAG00000017765)	fam83c (ENSSPAG00000017752)	uqcc1 (ENSSPAG00000017737)	ENSSPAG00000017711	GDF5 (ENSSPAG00000017689)	sdc4 (ENSSPAG00000017666) #22	oser1 (ENSSPAG00000017656)	manf (ENSSPAG00000017635)	rbm15b (ENSSPAG00000017603)
Pomacentridae_A	ANCESTRAL SPECIES	168			ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000006044	ENSGT00940000165085	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234583.a.a.c.b.a.a.b.a.b.a.b
Amphiprion	ANCESTRAL SPECIES	144	ENSGT00530000064100	ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000006044	ENSGT00940000165085	ENSGT00940000179908	ENSGT00440000038003	ENSGT00390000011067.C	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234583.a.a.c.b.a.a.b.a.b.a.b
Orange clownfish	MODERN SPECIES	20	DOCK3 (ENSAPEG00000022687)	smpd4 (ENSAPEG00000022790)	ENSAPEG00000022875	ENSAPEG00000022932	ENSAPEG00000022953	ENSAPEG00000022971	map1lc3a (ENSAPEG00000022980)	eif6 (ENSAPEG00000022991)	MMP24 (ENSAPEG00000023011)	fam83c (ENSAPEG00000023028)	ENSAPEG00000023042	uqcc1 (ENSAPEG00000023052)	ENSAPEG00000023064	GDF5 (ENSAPEG00000023071)	ENSAPEG00000023078	sdc4 (ENSAPEG00000023088) #22	oser1 (ENSAPEG00000023096)	manf (ENSAPEG00000023114)	rbm15b (ENSAPEG00000023123)	pcbp4 (ENSAPEG00000023157)	ENSAPEG00000023199	ENSAPEG00000023206	dag1 (ENSAPEG00000023264)	ENSAPEG00000023275	nicn1 (ENSAPEG00000023299)	ENSAPEG00000023309	ENSAPEG00000023380	ENSAPEG00000023400	ENSAPEG00000023412	ENSAPEG00000023421	ENSAPEG00000023429
Clown anemonefish	MODERN SPECIES	3611													uqcc1 (ENSAOCG00000002952)	GDF5 (ENSAOCG00000002945)	ENSAOCG00000002941	sdc4 (ENSAOCG00000002939) #22
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4545																ENSAPOG00000020420 #22
Spiny chromis	MODERN SPECIES	1643													ENSAPOG00000014298	ENSAPOG00000000389	GDF5 (ENSAPOG00000014327)	ENSAPOG00000014339 #22	oser1 (ENSAPOG00000014371)	manf (ENSAPOG00000014381)	rbm15b (ENSAPOG00000014432)	tspan18a (ENSAPOG00000014557)
Tiger tail seahorse	MODERN SPECIES	295	lyar (ENSHCOG00000013811)	zbtb49 (ENSHCOG00000013830)	SYNPR (ENSHCOG00000013884)	thoc7 (ENSHCOG00000013910)	ATXN7 (ENSHCOG00000013916)	psmd6 (ENSHCOG00000013948)	slc2a9l1 (ENSHCOG00000013976)	DOCK3 (ENSHCOG00000000395)	smpd4 (ENSHCOG00000014063)	ENSHCOG00000014073	fam83c (ENSHCOG00000014079)	map1lc3a (ENSHCOG00000014098)	eif6 (ENSHCOG00000014120)	ENSHCOG00000014129	uqcc1 (ENSHCOG00000014217)	sdc4 (ENSHCOG00000014227) #22	ENSHCOG00000014246	manf (ENSHCOG00000014258)	rbm15b (ENSHCOG00000014262)	dag1 (ENSHCOG00000014265)	ENSHCOG00000014312	AMIGO3 (ENSHCOG00000014318)	RNF123 (ENSHCOG00000014368)	aldh4a1 (ENSHCOG00000014399)	ENSHCOG00000014417	PIK3C2B (ENSHCOG00000000710)	FAM107A (ENSHCOG00000014565)	mkrn2 (ENSHCOG00000014604)	ENSHCOG00000014610	ENSHCOG00000014625	ENSHCOG00000014632
Pinecone sodierfish	MODERN SPECIES	19	RBPJL (ENSMMDG00005005594) #23	ENSMMDG00005005592	DOCK3 (ENSMMDG00005003464)	DCAF1 (ENSMMDG00005003421)	smpd4 (ENSMMDG00005003305)	slc38a9 (ENSMMDG00005003272)	ENSMMDG00005003268	ENSMMDG00005003265	dynlrb2 (ENSMMDG00005003261)	map1lc3a (ENSMMDG00005003255)	eif6 (ENSMMDG00005003249)	MMP24 (ENSMMDG00005003243)	fam83c (ENSMMDG00005003239)	uqcc1 (ENSMMDG00005003234)	GDF5 (ENSMMDG00005003163)	sdc4 (ENSMMDG00005003151) #22	oser1 (ENSMMDG00005003145)	manf (ENSMMDG00005003139)	rbm15b (ENSMMDG00005003136)	pcbp4 (ENSMMDG00005003066)	dag1 (ENSMMDG00005003054)	nicn1 (ENSMMDG00005003047)	GRM7 (ENSMMDG00005003020)	ENSMMDG00005002995	AMIGO3 (ENSMMDG00005002992)	RNF123 (ENSMMDG00005002933)	ENSMMDG00005002891	ENSMMDG00005002881	ENSMMDG00005002875	ENSMMDG00005002868	ENSMMDG00005002864
Cod	MODERN SPECIES	4	ENSGMOG00000032408	ENSGMOG00000002226	ENSGMOG00000035259	ENSGMOG00000031620	ENSGMOG00000026228	ENSGMOG00000029721	ENSGMOG00000028592	ENSGMOG00000036770	ENSGMOG00000011692	ENSGMOG00000011688	eif6 (ENSGMOG00000011684)	fam83c (ENSGMOG00000003558)	uqcc1 (ENSGMOG00000033876)	ENSGMOG00000035556	GDF5 (ENSGMOG00000022945)	ENSGMOG00000003404 #22	ENSGMOG00000034142	manf (ENSGMOG00000003389)	ENSGMOG00000026672	pcbp4 (ENSGMOG00000028507)	ENSGMOG00000003333	nicn1 (ENSGMOG00000016757)	ENSGMOG00000013553	ENSGMOG00000014472	ENSGMOG00000028639	ENSGMOG00000027515	ENSGMOG00000025739	ENSGMOG00000036290	ENSGMOG00000013978	ENSGMOG00000013925	ENSGMOG00000027519
Otomorpha	ANCESTRAL SPECIES	119	ENSGT00940000158934 #35	ENSGT01090000260040.b.a.b #34	ENSGT00940000157106 #33	ENSGT00940000157007.i.a	ENSGT00940000154697.a.b	ENSGT00940000165514	ENSGT00940000154984.B	ENSGT00940000160096 #30	ENSGT00940000161337.a.a.b.b	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.a	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000018547	ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00940000176933	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000156561.a.b.b	ENSGT00950000182897.A	ENSGT00940000154281	ENSGT00940000156107.e.b	ENSGT00950000183080.a.a.e.b.c	ENSGT00940000156107.f	ENSGT00940000178607	ENSGT00950000183080.a.a.e.b.d.b	ENSGT00940000159521
Clupeiformes	ANCESTRAL SPECIES	27	ENSGT00940000160937	ENSGT00940000160129	ENSGT00940000166055	ENSGT00940000158934 #35	ENSGT01090000260040.b.a.b #34	ENSGT00940000157106 #33	ENSGT00940000154697.a.b	ENSGT00940000165514	ENSGT00940000154984.B	ENSGT00940000160096 #30	ENSGT00940000161337.a.a.b.b	ENSGT00940000161337.a.a.a.a	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000018547	ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000156561.a.b.b	ENSGT00950000182897.A	ENSGT00940000154281	ENSGT00940000156107.e.b	ENSGT00950000183080.a.a.f	ENSGT00940000158384.d	ENSGT00940000155071.C	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT01050000244882.b.c.a.a
Atlantic herring	MODERN SPECIES	21						ENSCHAG00000011172	ENSCHAG00000011189	ENSCHAG00000011197	ENSCHAG00000011248	ENSCHAG00000011267	ENSCHAG00000011299	or90a1 (ENSCHAG00000011309)	matn4 (ENSCHAG00000011353) #24	RBPJL (ENSCHAG00000011542) #23	oser1 (ENSCHAG00000011989)	sdc4 (ENSCHAG00000011995) #22	GDF5 (ENSCHAG00000012012)	uqcc1 (ENSCHAG00000012054)	fam83c (ENSCHAG00000012082)	MMP24 (ENSCHAG00000012095)	eif6 (ENSCHAG00000012670)	ESYT1 (ENSCHAG00000012701)	zc3h10 (ENSCHAG00000013378)	ENSCHAG00000013385	pa2g4a (ENSCHAG00000013406)	ERBB3 (ENSCHAG00000013607)	ARF3 (ENSCHAG00000017812)	bhlhe40 (ENSCHAG00000017831)	ITPR1 (ENSCHAG00000018029)	setmar (ENSCHAG00000025278)	lrrn1 (ENSCHAG00000025281)
Denticle herring	MODERN SPECIES	3	rspo4 (ENSDCDG00000026307)	ANGPT4 (ENSDCDG00000026264)	ENSDCDG00000026263	RIMS4 (ENSDCDG00000026262) #35	YWHAB (ENSDCDG00000026259) #34	tomm34 (ENSDCDG00000026257)	cox6c (ENSDCDG00000026255)	ENSDCDG00000025794	KCNS1 (ENSDCDG00000025770) #30	or90h4 (ENSDCDG00000025767)	ENSDCDG00000025766	or90a1 (ENSDCDG00000025765)	matn4 (ENSDCDG00000025762) #24	RBPJL (ENSDCDG00000025737) #23	oser1 (ENSDCDG00000025729)	sdc4 (ENSDCDG00000025712) #22	GDF5 (ENSDCDG00000025709)	uqcc1 (ENSDCDG00000025703)	fam83c (ENSDCDG00000025700)	MMP24 (ENSDCDG00000025557)	eif6 (ENSDCDG00000025528)	ESYT1 (ENSDCDG00000024805)	zc3h10 (ENSDCDG00000024787)	pa2g4a (ENSDCDG00000024781)	ERBB3 (ENSDCDG00000013741)	arf3b (ENSDCDG00000013288)	bhlhe40 (ENSDCDG00000013282)	ENSDCDG00000013280	ENSDCDG00000003598	setmar (ENSDCDG00000002977)	lrrn1 (ENSDCDG00000002962)
Otophysi	ANCESTRAL SPECIES	15					ENSGT00940000154984.B	ENSGT00940000160096 #30	ENSGT00940000161337.a.a.b.b.g.b	ENSGT00940000161337.a.a.b.b.g.a	ENSGT00940000161337.a.a.b.b.h	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.a	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000018547	ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00940000176933	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00940000180339	ENSGT00390000015972	ENSGT00940000156561.a.b.b	ENSGT00950000182897.A	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT01090000260040.b.a.b.`b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000160129
Characiphysae	ANCESTRAL SPECIES	124	ENSGT00940000165371.a.d	ENSGT00940000155198.B	ENSGT00940000164786.a	ENSGT00940000165909	ENSGT00940000154984.B	ENSGT00940000160096 #30	ENSGT00940000161337.a.a.b.b.h	ENSGT00940000161337.a.a.b.b.g.b	ENSGT00940000161337.a.a.b.b.g.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.a	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000018547	ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00940000176933	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00940000180339	ENSGT00390000015972	ENSGT00940000156561.a.b.b	ENSGT00950000182897.A	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT01090000260040.b.a.b.`b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000160129
Channel catfish	MODERN SPECIES	2	esd (ENSIPUG00000002394)	ENSIPUG00000002381	ENSIPUG00000002334	kiaa0226l (ENSIPUG00000002323)	DHRS12 (ENSIPUG00000002285)	wdfy2 (ENSIPUG00000002256)	ints6 (ENSIPUG00000002221)	serpine3 (ENSIPUG00000002212)	ENSIPUG00000002209	TBC1D8 (ENSIPUG00000002183)	ENSIPUG00000002161	ENSIPUG00000002148	ENSIPUG00000002120	ENSIPUG00000002110	ENSIPUG00000002101	sdc4 (ENSIPUG00000002082) #22	GDF5 (ENSIPUG00000002074)	uqcc1 (ENSIPUG00000002054)	FAM83C (ENSIPUG00000002046)	MMP24 (ENSIPUG00000001993)	eif6 (ENSIPUG00000001948)	ENSIPUG00000001734	zc3h10 (ENSIPUG00000001697)	CX6C1 (ENSIPUG00000001681)	tomm34 (ENSIPUG00000001635)	ywhaba (ENSIPUG00000001620) #34	Rims4 (ENSIPUG00000001607) #35	psmf1 (ENSIPUG00000001567)	TMEM74B (ENSIPUG00000001562)	blcap (ENSIPUG00000001560)	ripor3 (ENSIPUG00000001543)
Characiphysae_b	ANCESTRAL SPECIES	139	ENSGT00940000155198.B	ENSGT00940000164786.a	ENSGT00940000165909	ENSGT00940000154984.B	ENSGT00940000159787 #31	ENSGT00940000160096 #30	ENSGT00940000161337.a.a.b.b.h	ENSGT00940000161337.a.a.b.b.g.b	ENSGT00940000161337.a.a.b.b.g.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.a	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000018547	ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00940000176933	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00940000180339	ENSGT00390000015972	ENSGT00940000156561.a.b.b	ENSGT00950000182897.A	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT01090000260040.b.a.b.`b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000160129
Electric eel	MODERN SPECIES	85	ENSEEEG00000002161	cntn4 (ENSEEEG00000002241)	rhebl1 (ENSEEEG00000002247)	ENSEEEG00000002261	KCNS1 (ENSEEEG00000002376) #30	ENSEEEG00000002379	ENSEEEG00000002384	ENSEEEG00000002387	or90e2 (ENSEEEG00000002389)	ENSEEEG00000002390	or90a1 (ENSEEEG00000002392)	ENSEEEG00000002396	matn4 (ENSEEEG00000002403) #24	RBPJL (ENSEEEG00000002410) #23	oser1 (ENSEEEG00000002455)	sdc4 (ENSEEEG00000002457) #22	GDF5 (ENSEEEG00000002459)	uqcc1 (ENSEEEG00000002468)	fam83c (ENSEEEG00000002474)	MMP24 (ENSEEEG00000002476)	eif6 (ENSEEEG00000002482)	ENSEEEG00000002489	zc3h10 (ENSEEEG00000002490)	cox6c (ENSEEEG00000002492)	tomm34 (ENSEEEG00000002493)	ywhaba (ENSEEEG00000002495) #34	RIMS4 (ENSEEEG00000002501) #35	ENSEEEG00000002502	ANGPT4 (ENSEEEG00000002504)	rspo4 (ENSEEEG00000002507)	psmf1 (ENSEEEG00000002511)
Characoidei	ANCESTRAL SPECIES	344																ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00940000176933	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00940000180339	ENSGT00390000015972
Red-bellied piranha	MODERN SPECIES	801																sdc4 (ENSPNAG00000022942) #22	GDF5 (ENSPNAG00000022930)	ENSPNAG00000022879	uqcc1 (ENSPNAG00000022870)
Mexicana tetra	MODERN SPECIES	300																sdc4 (ENSAMXG00000043921) #22	ENSAMXG00000038827
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT01000000214413.b.a.b.b.b	ENSGT00990000203619.B.b	ENSGT00940000156617.e.a	ENSGT00940000157127.a	ENSGT00940000155125.a.a	ENSGT00530000063849.A.b	ENSGT00940000166002	ENSGT00940000161337.a.a.b.b.g.b.d.b	ENSGT00940000161337.a.a.b.b.g.b.d.a	ENSGT00940000161337.a.a.b.b.g.a.a.b	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.a	ENSGT00940000157086.b #24	ENSGT00390000005197.b #23	ENSGT00390000018547	ENSGT00940000160663 #22	ENSGT00940000160455	ENSGT00390000018118	ENSGT00940000160254	ENSGT00940000158315	ENSGT00940000180339	ENSGT00390000015972	ENSGT00940000156561.a.b.b	ENSGT00950000182897.A	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT01090000260040.b.a.b.`b #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000160129	ENSGT00940000160937
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	9	ENSGT01000000214687.a	ENSGT00410000025882.a.a	ENSGT01000000214413.b.a.b.b.b.t	ENSGT00990000203619.B.b.b	ENSGT00940000156617.e.a.i	ENSGT00940000157127.a.a	ENSGT00940000155125.a.a.b.a	ENSGT00530000063849.A.b.c	ENSGT00940000166002.m	ENSGT00940000161337.a.a.b.b.g.b.c	ENSGT00940000161337.a.a.b.b.g.a.a.b.a	ENSGT00940000161337.a.a.a.a	ENSGT00940000157086.b.h #24	ENSGT00390000005197.b.d #23	ENSGT00390000018547.a	ENSGT00940000160663.e #22	ENSGT00940000160455.e	ENSGT00390000018118.a	ENSGT00940000160254.b	ENSGT00940000158315.e	ENSGT00390000015972.m	ENSGT00940000156561.a.b.b.d	ENSGT00950000182897.A.e	ENSGT00940000165514.j	ENSGT00940000154697.a.b.ec	ENSGT01090000260040.b.a.b.`b.b #34	ENSGT00940000158934.d #35	ENSGT00940000166055.a.a	ENSGT00940000160129.a	ENSGT00940000160937.a.b	ENSGT00390000012257.j
Cyprininae_a	ANCESTRAL SPECIES	20	ENSGT01000000214687.a	ENSGT00410000025882.a.a	ENSGT01000000214413.b.a.b.b.b.t	ENSGT00990000203619.B.b.b	ENSGT00940000156617.e.a.i	ENSGT00940000157127.a.a	ENSGT00940000155125.a.a.b.a	ENSGT00530000063849.A.b.c	ENSGT00940000166002.m	ENSGT00940000161337.a.a.b.b.g.b.c	ENSGT00940000161337.a.a.b.b.g.a.a.b.a	ENSGT00940000161337.a.a.a.a	ENSGT00940000157086.b.h #24	ENSGT00390000005197.b.d #23	ENSGT00390000018547.a	ENSGT00940000160663.e #22	ENSGT00940000160455.e	ENSGT00390000018118.a.a	ENSGT00940000160254.b	ENSGT00940000158315.e	ENSGT00390000015972.m	ENSGT00940000156561.a.b.b.d	ENSGT00950000182897.A.e	ENSGT00940000154697.a.b.ec	ENSGT01090000260040.b.a.b.`b.b #34	ENSGT00940000158934.d #35	ENSGT00940000166055.a.a	ENSGT00940000160129.a	ENSGT00940000160937.a.a	ENSGT00390000012257.j	ENSGT00530000063880.a.b
Golden-line barbel	MODERN SPECIES	201	gnb1b (ENSSGRG00000049560)	ENSSGRG00000049693	rbm5 (ENSSGRG00000049694)	SLC38A3 (ENSSGRG00000049825)	gnai2b (ENSSGRG00000050009)	inka1b (ENSSGRG00000050188)	ENSSGRG00000050189	ENSSGRG00000050439	ENSSGRG00000050440	or90b1 (ENSSGRG00000050441)	or90a1 (ENSSGRG00000050442)	matn4 (ENSSGRG00000050443) #24	RBPJL (ENSSGRG00000050449) #23	ENSSGRG00000050453	oser1 (ENSSGRG00000050455)	sdc4 (ENSSGRG00000050457) #22	GDF5 (ENSSGRG00000050458)	uqcc1 (ENSSGRG00000050461)	fam83c (ENSSGRG00000050465)	MMP24 (ENSSGRG00000050468)	eif6 (ENSSGRG00000050471)	ENSSGRG00000050484	zc3h10 (ENSSGRG00000050485)	tomm34 (ENSSGRG00000050487)	ywhaba (ENSSGRG00000050489) #34	RIMS4 (ENSSGRG00000050539) #35	ENSSGRG00000050540	ENSSGRG00000050541
Common carp reference	MODERN SPECIES	10	ENSCCRG00000049745	rbm5 (ENSCCRG00000049748)	ENSCCRG00000000237	gnai2b (ENSCCRG00000017881)	inka1b (ENSCCRG00000017480)	ENSCCRG00000017441	ENSCCRG00000056108	ENSCCRG00000056178	or90b1 (ENSCCRG00000071081)	or90e2 (ENSCCRG00000081029)	ENSCCRG00000019346	ENSCCRG00000080841	matn4 (ENSCCRG00000026148) #24	ENSCCRG00000070585 #23	oser1 (ENSCCRG00000026129)	sdc4 (ENSCCRG00000053752) #22	GDF5 (ENSCCRG00000026137)	uqcc1 (ENSCCRG00000053764)	fam83c (ENSCCRG00000004706)	ENSCCRG00000062337	eif6 (ENSCCRG00000069389)	ENSCCRG00000041367	zc3h10 (ENSCCRG00000076929)	ENSCCRG00000041400	tomm34 (ENSCCRG00000041406)	ywhaba (ENSCCRG00000073960) #34	ENSCCRG00000041458 #35	ENSCCRG00000041472	ANGPT4 (ENSCCRG00000041490)	rspo4 (ENSCCRG00000043457)	psmf1 (ENSCCRG00000029029)
Goldfish	MODERN SPECIES	46	abhd14b (ENSCARG00000025523)	mst1 (ENSCARG00000024859)	ENSCARG00000024799	C3orf18 (ENSCARG00000024792)	ENSCARG00000024770	rbm5 (ENSCARG00000024570)	SLC38A3 (ENSCARG00000024040)	gnai2b (ENSCARG00000023991)	inka1b (ENSCARG00000023987)	ENSCARG00000023846	ENSCARG00000023820	or90b1 (ENSCARG00000023811)	or90a1 (ENSCARG00000023804)	matn4 (ENSCARG00000023729) #24	oser1 (ENSCARG00000023703)	sdc4 (ENSCARG00000023696) #22	GDF5 (ENSCARG00000023692)	uqcc1 (ENSCARG00000023679)	fam83c (ENSCARG00000023670)	MMP24 (ENSCARG00000023264)	eif6 (ENSCARG00000023228)	ENSCARG00000022527	zc3h10 (ENSCARG00000022483)	cox6c (ENSCARG00000035925)	tomm34 (ENSCARG00000035916)	ywhaba (ENSCARG00000035862) #34	ENSCARG00000035851	RIMS4 (ENSCARG00000035795) #35	ENSCARG00000035779	ANGPT4 (ENSCARG00000035562)	rspo4 (ENSCARG00000035544)
Cyprininae	ANCESTRAL SPECIES	90	ENSGT00410000025882.a.b	ENSGT01000000214413.b.a.b.b.b.s	ENSGT00990000203619.B.b.a	ENSGT00940000156617.e.a.j	ENSGT00940000157127.a.b	ENSGT00940000155125.a.a.b.b	ENSGT00530000063849.A.b.d	ENSGT00940000161337.a.a.b.b.g.b.d.b	ENSGT00940000161337.a.a.b.b.g.b.d.a	ENSGT00940000161337.a.a.b.b.h	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.a	ENSGT00940000157086.b.g #24	ENSGT00390000005197.b.c #23	ENSGT00390000018547.b	ENSGT00940000160663.f #22	ENSGT00940000160455.f	ENSGT00390000018118.b	ENSGT00940000160254.a	ENSGT00940000158315.f	ENSGT00390000015972.n	ENSGT00940000156561.a.b.b.c	ENSGT00950000182897.A.f	ENSGT00940000165514.i	ENSGT00940000154697.a.b.dc	ENSGT01090000260040.b.a.b.`b.a #34	ENSGT00940000158934.c.b #35	ENSGT00940000166055.b	ENSGT00940000160129.b	ENSGT00940000160937.b	ENSGT00390000012257.i
Cyprininae_a	ANCESTRAL SPECIES	68													ENSGT00940000157086.b.g #24	ENSGT00390000005197.b.c #23	ENSGT00390000018547.b	ENSGT00940000160663.f #22	ENSGT00940000160455.f	ENSGT00390000018118.a.b	ENSGT00940000160254.a	ENSGT00940000158315.f	ENSGT00390000015972.n	ENSGT00940000156561.a.b.b.c	ENSGT00950000182897.A.f	ENSGT00940000165514.i	ENSGT00940000154697.a.b.dc	ENSGT01090000260040.b.a.b.`b.a #34	ENSGT00940000158934.c.a #35	ENSGT00940000166055.b	ENSGT00940000160129.b	ENSGT00940000160937.b	ENSGT00390000012257.i
Golden-line barbel	MODERN SPECIES	93	gnb1b (ENSSGRG00000023324)	ENSSGRG00000023323	rbm5 (ENSSGRG00000023322)	SLC38A3 (ENSSGRG00000022589)	gnai2b (ENSSGRG00000021975)	inka1b (ENSSGRG00000021956)	ENSSGRG00000021955	or90b1 (ENSSGRG00000021954)	or90b2 (ENSSGRG00000021953)	ENSSGRG00000021952	ENSSGRG00000021951	ENSSGRG00000021950	matn4 (ENSSGRG00000021948) #24	RBPJL (ENSSGRG00000021946) #23	oser1 (ENSSGRG00000021945)	sdc4 (ENSSGRG00000021944) #22	GDF5 (ENSSGRG00000021942)	uqcc1 (ENSSGRG00000021941)	fam83c (ENSSGRG00000021940)	MMP24 (ENSSGRG00000021938)	ENSSGRG00000021936	ENSSGRG00000021796	ENSSGRG00000021787	zc3h10 (ENSSGRG00000021777)
Common carp reference	MODERN SPECIES	16	gnb1b (ENSCCRG00000049743)	ENSCCRG00000078783	rbm5 (ENSCCRG00000071867)	ENSCCRG00000082135	gnai2b (ENSCCRG00000057063)	inka1b (ENSCCRG00000009778)	ENSCCRG00000080248	ENSCCRG00000071130	ENSCCRG00000069802	ENSCCRG00000069111	ENSCCRG00000009791	ENSCCRG00000077265	matn4 (ENSCCRG00000008192) #24	ENSCCRG00000026258 #23	oser1 (ENSCCRG00000077821)	sdc4 (ENSCCRG00000059213) #22	GDF5 (ENSCCRG00000077836)	uqcc1 (ENSCCRG00000004003)	fam83c (ENSCCRG00000063114)	ENSCCRG00000077722	eif6 (ENSCCRG00000029003)	ENSCCRG00000029570	cox6c (ENSCCRG00000033105)	tomm34 (ENSCCRG00000033113)	ywhaba (ENSCCRG00000033122) #34	ENSCCRG00000021420 #35	ENSCCRG00000021422	ANGPT4 (ENSCCRG00000021432)	rspo4 (ENSCCRG00000034445)	psmf1 (ENSCCRG00000043452)	TMEM74B (ENSCCRG00000054999)
Goldfish	MODERN SPECIES	24	C3orf18 (ENSCARG00000022926)	gnb1b (ENSCARG00000022932)	ENSCARG00000022948	rbm5 (ENSCARG00000022958)	SLC38A3 (ENSCARG00000023137)	gnai2b (ENSCARG00000023344)	inka1b (ENSCARG00000023390)	ENSCARG00000023399	ENSCARG00000023404	ENSCARG00000023408	ENSCARG00000023416	ENSCARG00000023423	matn4 (ENSCARG00000023447) #24	RBPJL (ENSCARG00000023673) #23	oser1 (ENSCARG00000023722)	sdc4 (ENSCARG00000023734) #22	GDF5 (ENSCARG00000023740)	uqcc1 (ENSCARG00000023770)	fam83c (ENSCARG00000023796)	MMP24 (ENSCARG00000023807)	eif6 (ENSCARG00000023851)	ENSCARG00000023907	zc3h10 (ENSCARG00000024789)	cox6c (ENSCARG00000024800)	tomm34 (ENSCARG00000024811)	ywhaba (ENSCARG00000024825) #34	RIMS4 (ENSCARG00000026573) #35	ENSCARG00000026606	ANGPT4 (ENSCARG00000026612)	rspo4 (ENSCARG00000026620)	psmf1 (ENSCARG00000026623)
Zebrafish	MODERN SPECIES	21	ENSDARG00000093273	ENSDARG00000091877	ENSDARG00000105838	or137-9 (ENSDARG00000105681)	or90e2 (ENSDARG00000105736)	ENSDARG00000105705	or90b2 (ENSDARG00000070344)	ENSDARG00000094030	ENSDARG00000087254	or90a1 (ENSDARG00000070341)	ENSDARG00000099958	matn4 (ENSDARG00000015947) #24	RBPJL (ENSDARG00000074148) #23	ENSDARG00000099370	oser1 (ENSDARG00000024669)	sdc4 (ENSDARG00000059906) #22	GDF5 (ENSDARG00000002760)	uqcc1 (ENSDARG00000068176)	fam83c (ENSDARG00000075296)	MMP24 (ENSDARG00000018896)	ENSDARG00000096319	eif6 (ENSDARG00000020232)	ENSDARG00000014239	zc3h10 (ENSDARG00000030335)	cox6c (ENSDARG00000038577)	tomm34 (ENSDARG00000001557)	ywhaba (ENSDARG00000013078) #34	RIMS4 (ENSDARG00000059523) #35	ENSDARG00000038583	ANGPT4 (ENSDARG00000076787)	rspo4 (ENSDARG00000038593)
Osteoglossiformes	ANCESTRAL SPECIES	28	ENSGT00390000016233.e.a.d	ENSGT00950000182835.c.d.a	ENSGT00940000154089.a.c	ENSGT00940000154791	ENSGT00940000166464	ENSGT00390000013132	ENSGT00390000003721.d.a.e	ENSGT00940000157802.l	ENSGT00940000158853	ENSGT00390000015972	ENSGT00940000158315	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000176933	ENSGT00940000160455	ENSGT00940000160663 #22	ENSGT00390000018547	ENSGT00390000005197.b #23	ENSGT00940000157086.b #24	ENSGT00940000161337.a.a.b.a	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096 #30	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000154697.a.b	ENSGT01090000260040.b.a.b.eb.a #34	ENSGT00940000158934 #35	ENSGT00940000166055	ENSGT00940000160129	ENSGT00940000160937
Asian bonytongue	MODERN SPECIES	14	rps23 (ENSSFOG00015003498)	hmces (ENSSFOG00015003550)	arpc4 (ENSSFOG00015003565)	PFKFB4 (ENSSFOG00015003620)	mapkapk3 (ENSSFOG00015003677)	DNAH1 (ENSSFOG00015003735)	chchd4a (ENSSFOG00015033358)	SEC61A1 (ENSSFOG00015003987)	map1lc3a (ENSSFOG00015004071)	eif6 (ENSSFOG00015004090)	MMP24 (ENSSFOG00015004122)	fam83c (ENSSFOG00015026139)	uqcc1 (ENSSFOG00015004178)	ENSSFOG00015004250	GDF5 (ENSSFOG00015004232)	sdc4 (ENSSFOG00015032117) #22	oser1 (ENSSFOG00015004285)	RBPJL (ENSSFOG00015004306) #23	matn4 (ENSSFOG00015004356) #24	ENSSFOG00015004409	or90a1 (ENSSFOG00015004468)	ENSSFOG00015010416	ENSSFOG00015027411	ENSSFOG00015031163	ENSSFOG00015010457	KCNS1 (ENSSFOG00015010480) #30	ENSSFOG00015010491	cox6c (ENSSFOG00015032358)	tomm34 (ENSSFOG00015010538)	YWHAB (ENSSFOG00015010577) #34	RIMS4 (ENSSFOG00015031165) #35
P. kingsleyae	MODERN SPECIES	60	arpc4 (ENSPKIG00000023685)	PFKFB4 (ENSPKIG00000023650)	mapkapk3 (ENSPKIG00000023596)	DNAH1 (ENSPKIG00000023502)	ENSPKIG00000023450	chchd4a (ENSPKIG00000023439)	SEC61A1 (ENSPKIG00000023403)	ENSPKIG00000023356	map1lc3a (ENSPKIG00000023334)	eif6 (ENSPKIG00000023303)	MMP24 (ENSPKIG00000023269)	fam83c (ENSPKIG00000023250)	uqcc1 (ENSPKIG00000023227)	ENSPKIG00000023203	GDF5 (ENSPKIG00000023191)	sdc4 (ENSPKIG00000023174) #22	oser1 (ENSPKIG00000023160)	RBPJL (ENSPKIG00000023144) #23	matn4 (ENSPKIG00000023114) #24	ENSPKIG00000023081	or90a1 (ENSPKIG00000023064)	KCNS1 (ENSPKIG00000023046) #30	ENSPKIG00000023005	cox6c (ENSPKIG00000022977)	tomm34 (ENSPKIG00000022953)
Spotted gar	MODERN SPECIES	656										eif6 (ENSLOCG00000007763)	MMP24 (ENSLOCG00000007747)	anxa13l (ENSLOCG00000007737)	fam83c (ENSLOCG00000007724)	uqcc1 (ENSLOCG00000007712)	GDF5 (ENSLOCG00000007687)	sdc4 (ENSLOCG00000007671) #22	oser1 (ENSLOCG00000007656)	RBPJL (ENSLOCG00000007645) #23	matn4 (ENSLOCG00000007617) #24	ENSLOCG00000017823	or90a1 (ENSLOCG00000017822)	ENSLOCG00000017821	ENSLOCG00000007596	ENSLOCG00000018369	or90h4 (ENSLOCG00000018368)	KCNS1 (ENSLOCG00000007582) #30	STK4 (ENSLOCG00000007569) #31	cox6c (ENSLOCG00000007557)	tomm34 (ENSLOCG00000007539)	pabpc1l (ENSLOCG00000007519) #33	ywhaba (ENSLOCG00000007504) #34
Reedfish	MODERN SPECIES	1	ENSECRG00000010605	ENSECRG00000010599	matn4 (ENSECRG00000010588) #24	RBPJL (ENSECRG00000010566) #23	mych (ENSECRG00000010553)	mtss1 (ENSECRG00000010526)	osgn1 (ENSECRG00000010512)	eif6 (ENSECRG00000010505)	MMP24 (ENSECRG00000010491)	ENSECRG00000010479	ENSECRG00000010475	anxa13l (ENSECRG00000010467)	fam83c (ENSECRG00000010460)	uqcc1 (ENSECRG00000010453)	GDF5 (ENSECRG00000010448)	ENSECRG00000010442 #22	oser1 (ENSECRG00000010438)	ergic3 (ENSECRG00000010414)	romo1 (ENSECRG00000010402)	cyc1 (ENSECRG00000010394)	mmp9 (ENSECRG00000008819)	ENSECRG00000008640	ncoa5 (ENSECRG00000008580)	ENSECRG00000008555	irx7 (ENSECRG00000008546)	tfap2c (ENSECRG00000008521)	GCNT7 (ENSECRG00000008505)	rtf2 (ENSECRG00000008491)	eya2 (ENSECRG00000008479)	tnnc2.2 (ENSECRG00000008457) #8	snx21 (ENSECRG00000008440) #7