Murinae	ANCESTRAL SPECIES	14	ENSGT01030000234582.f.a.a.b #7	ENSGT01030000234621.C.a.a.a #8	ENSGT00950000182887.C.b.b #9	ENSGT00940000153222.a.b.b.b.b #10	ENSGT00940000158195 #11	ENSGT00940000159625 #12	ENSGT00940000159565 #13	ENSGT00390000006492 #14	ENSGT00940000154651 #15	ENSGT00940000153609.a #16	ENSGT00940000159334 #17	ENSGT00510000049291 #18	ENSGT00510000048979.c.b #19	ENSGT00510000048979.c.a #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a #23	ENSGT00940000160693 #24	ENSGT00940000154442.sc.b #25	ENSGT00940000159429 #26	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.c.a.a #30	ENSGT00390000015252.d ##30	ENSGT00950000182963.b.b #31	ENSGT00940000163191 #32	ENSGT00510000047029 #33	ENSGT00940000156837 #34	ENSGT00390000005569.x.a.b.a #35	ENSGT00530000063624.B #36
Mus	ANCESTRAL SPECIES	9	ENSGT01030000234582.f.a.a.b #7	ENSGT01030000234621.C.a.a.a #8	ENSGT00950000182887.C.b.b #9	ENSGT00940000153222.a.b.b.b.b #10	ENSGT00940000158195 #11	ENSGT00940000159625 #12	ENSGT00940000159565 #13	ENSGT00390000006492 #14	ENSGT00940000154651 #15	ENSGT00940000153609.a #16	ENSGT00940000159334 #17	ENSGT00510000049291 #18	ENSGT00510000048979.c.b #19	ENSGT00510000048979.c.a #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a #23	ENSGT00940000160693 #24	ENSGT00940000154442.sc.b #25	ENSGT00940000159429 #26	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.c.a.a #30	ENSGT00390000015252.d ##30	ENSGT00950000182963.b.b #31	ENSGT00940000163191 #32	ENSGT00510000047029 #33	ENSGT00940000156837 #34	ENSGT00390000005569.x.a.b.a #35	ENSGT00530000063624.B #36
Shrew mouse	MODERN SPECIES	23	Awat1 (MGP_PahariEiJ_G0031808) #7	P2ry4 (MGP_PahariEiJ_G0031809) #8	Arr3 (MGP_PahariEiJ_G0031810) #9	Pdzd11 (MGP_PahariEiJ_G0031811) #10	Kif4 (MGP_PahariEiJ_G0031812) #11	Gdpd2 (MGP_PahariEiJ_G0031813) #12	Dlg3 (MGP_PahariEiJ_G0031814) #13	Tex11 (MGP_PahariEiJ_G0031815) #14	Slc7a3 (MGP_PahariEiJ_G0031816) #15	Snx12 (MGP_PahariEiJ_G0031817) #16	Foxo4 (MGP_PahariEiJ_G0031818) #17	Gm614 (MGP_PahariEiJ_G0031819) #18	MGP_PahariEiJ_G0031820 #19	Il2rg (MGP_PahariEiJ_G0031821) #20	Med12 (MGP_PahariEiJ_G0031822) #21	Nlgn3 (MGP_PahariEiJ_G0031823) #22	Gjb1 (MGP_PahariEiJ_G0031824) #23	Zmym3 (MGP_PahariEiJ_G0031825) #24	Nono (MGP_PahariEiJ_G0031826) #25	Itgb1bp2 (MGP_PahariEiJ_G0031827) #26	MGP_PahariEiJ_G0031828 #27	Ogt (MGP_PahariEiJ_G0031829) #28	Cxcr3 (MGP_PahariEiJ_G0031830) #29	MGP_PahariEiJ_G0031831 #30	Nhsl2 (MGP_PahariEiJ_G0031832) #31	Rtl5 (MGP_PahariEiJ_G0031833) #32	Pin4 (MGP_PahariEiJ_G0031834) #33	Ercc6l (MGP_PahariEiJ_G0031835) #34	Rps4x (MGP_PahariEiJ_G0031836) #35	Cited1 (MGP_PahariEiJ_G0031837) #36	Hdac8 (MGP_PahariEiJ_G0031838) #37
Mus_A	ANCESTRAL SPECIES	15	ENSGT01030000234582.f.a.a.b #7	ENSGT01030000234621.C.a.a.a #8	ENSGT00950000182887.C.b.b #9	ENSGT00940000153222.a.b.b.b.b #10	ENSGT00940000158195 #11	ENSGT00940000159625 #12	ENSGT00940000159565 #13	ENSGT00390000006492 #14	ENSGT00940000154651 #15	ENSGT00940000153609.a #16	ENSGT00940000159334 #17	ENSGT00510000049291 #18	ENSGT00510000048979.c.b #19	ENSGT00510000048979.c.a #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a #23	ENSGT00940000160693 #24	ENSGT00940000154442.sc.b #25	ENSGT00940000159429 #26	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.c.a.a #30	ENSGT00390000015252.d ##30	ENSGT00950000182963.b.b #31	ENSGT00940000163191 #32	ENSGT00510000047029 #33	ENSGT00940000156837 #34	ENSGT00390000005569.x.a.b.a #35	ENSGT00530000063624.B #36
Mus_B	ANCESTRAL SPECIES	14	ENSGT01030000234582.f.a.a.b #7	ENSGT01030000234621.C.a.a.a #8	ENSGT00950000182887.C.b.b #9	ENSGT00940000153222.a.b.b.b.b #10	ENSGT00940000158195 #11	ENSGT00940000159625 #12	ENSGT00940000159565 #13	ENSGT00390000006492 #14	ENSGT00940000154651 #15	ENSGT00940000153609.a #16	ENSGT00940000159334 #17	ENSGT00510000049291 #18	ENSGT00510000048979.c.b #19	ENSGT00510000048979.c.a #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a #23	ENSGT00940000160693 #24	ENSGT00940000154442.sc.b #25	ENSGT00940000159429 #26	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.c.a.b ##30	ENSGT00390000015252.c.a.a #30	ENSGT00390000015252.d ##30	ENSGT00950000182963.b.b #31	ENSGT00940000163191 #32	ENSGT00510000047029 #33	ENSGT00940000156837 #34	ENSGT00390000005569.x.a.b.a #35
Mus_C	ANCESTRAL SPECIES	22	ENSGT01030000234582.f.a.a.b #7	ENSGT01030000234621.C.a.a.a #8	ENSGT00950000182887.C.b.b #9	ENSGT00940000153222.a.b.b.b.b #10	ENSGT00940000158195 #11	ENSGT00940000159625 #12	ENSGT00940000159565 #13	ENSGT00390000006492 #14	ENSGT00940000154651 #15	ENSGT00940000153609.a #16	ENSGT00940000159334 #17	ENSGT00510000049291 #18	ENSGT00510000048979.c.b #19	ENSGT00510000048979.c.a #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a #23	ENSGT00940000160693 #24	ENSGT00940000154442.sc.b #25	ENSGT00940000159429 #26	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.c.a.a #30	ENSGT00390000015252.d ##30	ENSGT00950000182963.b.b #31	ENSGT00940000163191 #32	ENSGT00510000047029 #33	ENSGT00940000156837 #34	ENSGT00390000005569.x.a.b.b.b ##35	ENSGT00530000063624.B #36
Steppe mouse	MODERN SPECIES	1604																Nlgn3 (ENSMSIG00000030060) #22
spretus	MODERN SPECIES	19	Awat1 (MGP_SPRETEiJ_G0034434) #7	P2ry4 (MGP_SPRETEiJ_G0034435) #8	Arr3 (MGP_SPRETEiJ_G0034436) #9	Pdzd11 (MGP_SPRETEiJ_G0034437) #10	Kif4 (MGP_SPRETEiJ_G0034438) #11	Gdpd2 (MGP_SPRETEiJ_G0034439) #12	Dlg3 (MGP_SPRETEiJ_G0034440) #13	Tex11 (MGP_SPRETEiJ_G0034441) #14	Slc7a3 (MGP_SPRETEiJ_G0034442) #15	Snx12 (MGP_SPRETEiJ_G0034443) #16	Foxo4 (MGP_SPRETEiJ_G0034444) #17	Gm614 (MGP_SPRETEiJ_G0034445) #18	MGP_SPRETEiJ_G0034446 #19	Il2rg (MGP_SPRETEiJ_G0034447) #20	Med12 (MGP_SPRETEiJ_G0034448) #21	Nlgn3 (MGP_SPRETEiJ_G0034449) #22	Gjb1 (MGP_SPRETEiJ_G0034450) #23	Zmym3 (MGP_SPRETEiJ_G0034451) #24	Itgb1bp2 (MGP_SPRETEiJ_G0034453) #26	Taf1 (MGP_SPRETEiJ_G0034454) #27	Ogt (MGP_SPRETEiJ_G0034455) #28	Cxcr3 (MGP_SPRETEiJ_G0034456) #29	8030474K03Rik (MGP_SPRETEiJ_G0034457) #30	Nhsl2 (MGP_SPRETEiJ_G0034458) #31	Rtl5 (MGP_SPRETEiJ_G0034459) #32	Pin4 (MGP_SPRETEiJ_G0034460) #33	Ercc6l (MGP_SPRETEiJ_G0034461) #34	MGP_SPRETEiJ_G0034462 ##35	Cited1 (MGP_SPRETEiJ_G0034463) #36	Hdac8 (MGP_SPRETEiJ_G0034464) #37	Phka1 (MGP_SPRETEiJ_G0034465)
Mouse	MODERN SPECIES	37	Dgat2l6 (ENSMUSG00000067597) ##7	Awat1 (ENSMUSG00000015665) #7	P2ry4 (ENSMUSG00000044359) #8	Arr3 (ENSMUSG00000060890) #9	Pdzd11 (ENSMUSG00000015668) #10	Kif4 (ENSMUSG00000034311) #11	Gdpd2 (ENSMUSG00000019359) #12	Dlg3 (ENSMUSG00000000881) #13	Tex11 (ENSMUSG00000009670) #14	Slc7a3 (ENSMUSG00000031297) #15	Snx12 (ENSMUSG00000046032) #16	Foxo4 (ENSMUSG00000042903) #17	Gm614 (ENSMUSG00000090141) #18	Il2rg (ENSMUSG00000031304) #20	Med12 (ENSMUSG00000079487) #21	Nlgn3 (ENSMUSG00000031302) #22	Gjb1 (ENSMUSG00000047797) #23	Zmym3 (ENSMUSG00000031310) #24	Nono (ENSMUSG00000031311) #25	Itgb1bp2 (ENSMUSG00000031312) #26	Taf1 (ENSMUSG00000031314) #27	Ogt (ENSMUSG00000034160) #28	Cxcr3 (ENSMUSG00000050232) #29	Gm4779 (ENSMUSG00000045010) ##30	8030474K03Rik (ENSMUSG00000046774) #30	Gm3858 (ENSMUSG00000118638) ##30	Nhsl2 (ENSMUSG00000079481) #31	Rtl5 (ENSMUSG00000049191) #32	Pin4 (ENSMUSG00000079480) #33	Ercc6l (ENSMUSG00000051220) #34	Rps4x (ENSMUSG00000031320) #35
Ryukyu mouse	MODERN SPECIES	19	Awat1 (MGP_CAROLIEiJ_G0033270) #7	P2ry4 (MGP_CAROLIEiJ_G0033271) #8	Arr3 (MGP_CAROLIEiJ_G0033272) #9	Pdzd11 (MGP_CAROLIEiJ_G0033273) #10	Kif4 (MGP_CAROLIEiJ_G0033274) #11	Gdpd2 (MGP_CAROLIEiJ_G0033275) #12	Dlg3 (MGP_CAROLIEiJ_G0033276) #13	Tex11 (MGP_CAROLIEiJ_G0033277) #14	Slc7a3 (MGP_CAROLIEiJ_G0033278) #15	Snx12 (MGP_CAROLIEiJ_G0033279) #16	Foxo4 (MGP_CAROLIEiJ_G0033280) #17	Gm614 (MGP_CAROLIEiJ_G0033281) #18	MGP_CAROLIEiJ_G0033282 #19	Il2rg (MGP_CAROLIEiJ_G0033283) #20	Med12 (MGP_CAROLIEiJ_G0033284) #21	Nlgn3 (MGP_CAROLIEiJ_G0033285) #22	Gjb1 (MGP_CAROLIEiJ_G0033286) #23	Zmym3 (MGP_CAROLIEiJ_G0033287) #24	MGP_CAROLIEiJ_G0033288 #25	Itgb1bp2 (MGP_CAROLIEiJ_G0033289) #26	Taf1 (MGP_CAROLIEiJ_G0033290) #27	Ogt (MGP_CAROLIEiJ_G0033291) #28	Cxcr3 (MGP_CAROLIEiJ_G0033292) #29	MGP_CAROLIEiJ_G0033293 #30	Nhsl2 (MGP_CAROLIEiJ_G0033294) #31	Rtl5 (MGP_CAROLIEiJ_G0033295) #32	MGP_CAROLIEiJ_G0033296 #33	Ercc6l (MGP_CAROLIEiJ_G0033297) #34	Rps4x (MGP_CAROLIEiJ_G0033298) #35	Cited1 (MGP_CAROLIEiJ_G0033299) #36	Hdac8 (MGP_CAROLIEiJ_G0033300) #37
Rat	MODERN SPECIES	46	Igbp1 (ENSRNOG00000026267)	Dgat2l6 (ENSRNOG00000038046) ##7	Awat1 (ENSRNOG00000026231) #7	P2ry4 (ENSRNOG00000070777) #8	Arr3 (ENSRNOG00000002904) #9	Pdzd11 (ENSRNOG00000064140) #10	Kif4a (ENSRNOG00000038035) #11	Gdpd2 (ENSRNOG00000002800) #12	Dlg3 (ENSRNOG00000002767) #13	Tex11 (ENSRNOG00000025672) #14	Slc7a3 (ENSRNOG00000004133) #15	Snx12 (ENSRNOG00000004036) #16	Foxo4 (ENSRNOG00000033316) #17	CXHXorf65 (ENSRNOG00000003954) #19	Med12 (ENSRNOG00000003848) #21	Nlgn3 (ENSRNOG00000003812) #22	Gjb1 (ENSRNOG00000063213) #23	Zmym3 (ENSRNOG00000003707) #24	Nono (ENSRNOG00000003689) #25	Itgb1bp2 (ENSRNOG00000003596) #26	Taf1 (ENSRNOG00000002565) #27	Ogt (ENSRNOG00000003359) #28	LOC102548506 (ENSRNOG00000066689)	Cxcr3 (ENSRNOG00000003305) #29	LOC102553785 (ENSRNOG00000025200) #30	Cxhxorf49 (ENSRNOG00000025211) ##30	LOC102555994 (ENSRNOG00000060462) ##30	Nhsl2 (ENSRNOG00000037951) #31	Rtl5 (ENSRNOG00000045779) #32	Pin4 (ENSRNOG00000050051) #33	Ercc6l (ENSRNOG00000003208) #34