Murinae	ANCESTRAL SPECIES	14	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000153222.a.b.b.b.b	ENSGT00940000158195	ENSGT00940000159625	ENSGT00940000159565	ENSGT00390000006492	ENSGT00940000154651	ENSGT00940000153609.a	ENSGT00940000159334	ENSGT00510000049291	ENSGT00510000048979.c.b	ENSGT00510000048979.c.a	ENSGT00440000037505.b	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693	ENSGT00940000154442.sc.b	ENSGT00940000159429	ENSGT00940000155242	ENSGT00940000155085.b	ENSGT01050000244848.B.a.b	ENSGT00390000015252.c.a.a	ENSGT00390000015252.d	ENSGT00950000182963.b.b	ENSGT00940000163191	ENSGT00510000047029	ENSGT00940000156837	ENSGT00390000005569.x.a.b.a	ENSGT00530000063624.B
Mus	ANCESTRAL SPECIES	9	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000153222.a.b.b.b.b	ENSGT00940000158195	ENSGT00940000159625	ENSGT00940000159565	ENSGT00390000006492	ENSGT00940000154651	ENSGT00940000153609.a	ENSGT00940000159334	ENSGT00510000049291	ENSGT00510000048979.c.b	ENSGT00510000048979.c.a	ENSGT00440000037505.b	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693	ENSGT00940000154442.sc.b	ENSGT00940000159429	ENSGT00940000155242	ENSGT00940000155085.b	ENSGT01050000244848.B.a.b	ENSGT00390000015252.c.a.a	ENSGT00390000015252.d	ENSGT00950000182963.b.b	ENSGT00940000163191	ENSGT00510000047029	ENSGT00940000156837	ENSGT00390000005569.x.a.b.a	ENSGT00530000063624.B
Mus_A	ANCESTRAL SPECIES	15	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000153222.a.b.b.b.b	ENSGT00940000158195	ENSGT00940000159625	ENSGT00940000159565	ENSGT00390000006492	ENSGT00940000154651	ENSGT00940000153609.a	ENSGT00940000159334	ENSGT00510000049291	ENSGT00510000048979.c.b	ENSGT00510000048979.c.a	ENSGT00440000037505.b	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693	ENSGT00940000154442.sc.b	ENSGT00940000159429	ENSGT00940000155242	ENSGT00940000155085.b	ENSGT01050000244848.B.a.b	ENSGT00390000015252.c.a.a	ENSGT00390000015252.d	ENSGT00950000182963.b.b	ENSGT00940000163191	ENSGT00510000047029	ENSGT00940000156837	ENSGT00390000005569.x.a.b.a	ENSGT00530000063624.B
Mus_B	ANCESTRAL SPECIES	14	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000153222.a.b.b.b.b	ENSGT00940000158195	ENSGT00940000159625	ENSGT00940000159565	ENSGT00390000006492	ENSGT00940000154651	ENSGT00940000153609.a	ENSGT00940000159334	ENSGT00510000049291	ENSGT00510000048979.c.b	ENSGT00510000048979.c.a	ENSGT00440000037505.b	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693	ENSGT00940000154442.sc.b	ENSGT00940000159429	ENSGT00940000155242	ENSGT00940000155085.b	ENSGT01050000244848.B.a.b	ENSGT00390000015252.c.a.b	ENSGT00390000015252.c.a.a	ENSGT00390000015252.d	ENSGT00950000182963.b.b	ENSGT00940000163191	ENSGT00510000047029	ENSGT00940000156837	ENSGT00390000005569.x.a.b.a
Mus_C	ANCESTRAL SPECIES	22	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000153222.a.b.b.b.b	ENSGT00940000158195	ENSGT00940000159625	ENSGT00940000159565	ENSGT00390000006492	ENSGT00940000154651	ENSGT00940000153609.a	ENSGT00940000159334	ENSGT00510000049291	ENSGT00510000048979.c.b	ENSGT00510000048979.c.a	ENSGT00440000037505.b	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693	ENSGT00940000154442.sc.b	ENSGT00940000159429	ENSGT00940000155242	ENSGT00940000155085.b	ENSGT01050000244848.B.a.b	ENSGT00390000015252.c.a.a	ENSGT00390000015252.d	ENSGT00950000182963.b.b	ENSGT00940000163191	ENSGT00510000047029	ENSGT00940000156837	ENSGT00390000005569.x.a.b.b.b	ENSGT00530000063624.B
Steppe mouse	MODERN SPECIES	1604																Nlgn3 (ENSMSIG00000030060) #22
spretus	MODERN SPECIES	19	Awat1 (MGP_SPRETEiJ_G0034434)	P2ry4 (MGP_SPRETEiJ_G0034435)	Arr3 (MGP_SPRETEiJ_G0034436)	Pdzd11 (MGP_SPRETEiJ_G0034437)	Kif4 (MGP_SPRETEiJ_G0034438)	Gdpd2 (MGP_SPRETEiJ_G0034439)	Dlg3 (MGP_SPRETEiJ_G0034440)	Tex11 (MGP_SPRETEiJ_G0034441)	Slc7a3 (MGP_SPRETEiJ_G0034442)	Snx12 (MGP_SPRETEiJ_G0034443)	Foxo4 (MGP_SPRETEiJ_G0034444)	Gm614 (MGP_SPRETEiJ_G0034445)	MGP_SPRETEiJ_G0034446	Il2rg (MGP_SPRETEiJ_G0034447)	Med12 (MGP_SPRETEiJ_G0034448)	Nlgn3 (MGP_SPRETEiJ_G0034449) #22	Gjb1 (MGP_SPRETEiJ_G0034450)	Zmym3 (MGP_SPRETEiJ_G0034451)	Itgb1bp2 (MGP_SPRETEiJ_G0034453)	Taf1 (MGP_SPRETEiJ_G0034454)	Ogt (MGP_SPRETEiJ_G0034455)	Cxcr3 (MGP_SPRETEiJ_G0034456)	8030474K03Rik (MGP_SPRETEiJ_G0034457)	Nhsl2 (MGP_SPRETEiJ_G0034458)	Rtl5 (MGP_SPRETEiJ_G0034459)	Pin4 (MGP_SPRETEiJ_G0034460)	Ercc6l (MGP_SPRETEiJ_G0034461)	MGP_SPRETEiJ_G0034462	Cited1 (MGP_SPRETEiJ_G0034463)	Hdac8 (MGP_SPRETEiJ_G0034464)	Phka1 (MGP_SPRETEiJ_G0034465)
Mouse	MODERN SPECIES	37	Dgat2l6 (ENSMUSG00000067597)	Awat1 (ENSMUSG00000015665)	P2ry4 (ENSMUSG00000044359)	Arr3 (ENSMUSG00000060890)	Pdzd11 (ENSMUSG00000015668)	Kif4 (ENSMUSG00000034311)	Gdpd2 (ENSMUSG00000019359)	Dlg3 (ENSMUSG00000000881)	Tex11 (ENSMUSG00000009670)	Slc7a3 (ENSMUSG00000031297)	Snx12 (ENSMUSG00000046032)	Foxo4 (ENSMUSG00000042903)	Gm614 (ENSMUSG00000090141)	Il2rg (ENSMUSG00000031304)	Med12 (ENSMUSG00000079487)	Nlgn3 (ENSMUSG00000031302) #22	Gjb1 (ENSMUSG00000047797)	Zmym3 (ENSMUSG00000031310)	Nono (ENSMUSG00000031311)	Itgb1bp2 (ENSMUSG00000031312)	Taf1 (ENSMUSG00000031314)	Ogt (ENSMUSG00000034160)	Cxcr3 (ENSMUSG00000050232)	Gm4779 (ENSMUSG00000045010)	8030474K03Rik (ENSMUSG00000046774)	Gm3858 (ENSMUSG00000118638)	Nhsl2 (ENSMUSG00000079481)	Rtl5 (ENSMUSG00000049191)	Pin4 (ENSMUSG00000079480)	Ercc6l (ENSMUSG00000051220)	Rps4x (ENSMUSG00000031320)
Ryukyu mouse	MODERN SPECIES	19	Awat1 (MGP_CAROLIEiJ_G0033270)	P2ry4 (MGP_CAROLIEiJ_G0033271)	Arr3 (MGP_CAROLIEiJ_G0033272)	Pdzd11 (MGP_CAROLIEiJ_G0033273)	Kif4 (MGP_CAROLIEiJ_G0033274)	Gdpd2 (MGP_CAROLIEiJ_G0033275)	Dlg3 (MGP_CAROLIEiJ_G0033276)	Tex11 (MGP_CAROLIEiJ_G0033277)	Slc7a3 (MGP_CAROLIEiJ_G0033278)	Snx12 (MGP_CAROLIEiJ_G0033279)	Foxo4 (MGP_CAROLIEiJ_G0033280)	Gm614 (MGP_CAROLIEiJ_G0033281)	MGP_CAROLIEiJ_G0033282	Il2rg (MGP_CAROLIEiJ_G0033283)	Med12 (MGP_CAROLIEiJ_G0033284)	Nlgn3 (MGP_CAROLIEiJ_G0033285) #22	Gjb1 (MGP_CAROLIEiJ_G0033286)	Zmym3 (MGP_CAROLIEiJ_G0033287)	MGP_CAROLIEiJ_G0033288	Itgb1bp2 (MGP_CAROLIEiJ_G0033289)	Taf1 (MGP_CAROLIEiJ_G0033290)	Ogt (MGP_CAROLIEiJ_G0033291)	Cxcr3 (MGP_CAROLIEiJ_G0033292)	MGP_CAROLIEiJ_G0033293	Nhsl2 (MGP_CAROLIEiJ_G0033294)	Rtl5 (MGP_CAROLIEiJ_G0033295)	MGP_CAROLIEiJ_G0033296	Ercc6l (MGP_CAROLIEiJ_G0033297)	Rps4x (MGP_CAROLIEiJ_G0033298)	Cited1 (MGP_CAROLIEiJ_G0033299)	Hdac8 (MGP_CAROLIEiJ_G0033300)
Shrew mouse	MODERN SPECIES	23	Awat1 (MGP_PahariEiJ_G0031808)	P2ry4 (MGP_PahariEiJ_G0031809)	Arr3 (MGP_PahariEiJ_G0031810)	Pdzd11 (MGP_PahariEiJ_G0031811)	Kif4 (MGP_PahariEiJ_G0031812)	Gdpd2 (MGP_PahariEiJ_G0031813)	Dlg3 (MGP_PahariEiJ_G0031814)	Tex11 (MGP_PahariEiJ_G0031815)	Slc7a3 (MGP_PahariEiJ_G0031816)	Snx12 (MGP_PahariEiJ_G0031817)	Foxo4 (MGP_PahariEiJ_G0031818)	Gm614 (MGP_PahariEiJ_G0031819)	MGP_PahariEiJ_G0031820	Il2rg (MGP_PahariEiJ_G0031821)	Med12 (MGP_PahariEiJ_G0031822)	Nlgn3 (MGP_PahariEiJ_G0031823) #22	Gjb1 (MGP_PahariEiJ_G0031824)	Zmym3 (MGP_PahariEiJ_G0031825)	Nono (MGP_PahariEiJ_G0031826)	Itgb1bp2 (MGP_PahariEiJ_G0031827)	MGP_PahariEiJ_G0031828	Ogt (MGP_PahariEiJ_G0031829)	Cxcr3 (MGP_PahariEiJ_G0031830)	MGP_PahariEiJ_G0031831	Nhsl2 (MGP_PahariEiJ_G0031832)	Rtl5 (MGP_PahariEiJ_G0031833)	Pin4 (MGP_PahariEiJ_G0031834)	Ercc6l (MGP_PahariEiJ_G0031835)	Rps4x (MGP_PahariEiJ_G0031836)	Cited1 (MGP_PahariEiJ_G0031837)	Hdac8 (MGP_PahariEiJ_G0031838)
Rat	MODERN SPECIES	46	Igbp1 (ENSRNOG00000026267)	Dgat2l6 (ENSRNOG00000038046)	Awat1 (ENSRNOG00000026231)	P2ry4 (ENSRNOG00000070777)	Arr3 (ENSRNOG00000002904)	Pdzd11 (ENSRNOG00000064140)	Kif4a (ENSRNOG00000038035)	Gdpd2 (ENSRNOG00000002800)	Dlg3 (ENSRNOG00000002767)	Tex11 (ENSRNOG00000025672)	Slc7a3 (ENSRNOG00000004133)	Snx12 (ENSRNOG00000004036)	Foxo4 (ENSRNOG00000033316)	CXHXorf65 (ENSRNOG00000003954)	Med12 (ENSRNOG00000003848)	Nlgn3 (ENSRNOG00000003812) #22	Gjb1 (ENSRNOG00000063213)	Zmym3 (ENSRNOG00000003707)	Nono (ENSRNOG00000003689)	Itgb1bp2 (ENSRNOG00000003596)	Taf1 (ENSRNOG00000002565)	Ogt (ENSRNOG00000003359)	LOC102548506 (ENSRNOG00000066689)	Cxcr3 (ENSRNOG00000003305)	LOC102553785 (ENSRNOG00000025200)	Cxhxorf49 (ENSRNOG00000025211)	LOC102555994 (ENSRNOG00000060462)	Nhsl2 (ENSRNOG00000037951)	Rtl5 (ENSRNOG00000045779)	Pin4 (ENSRNOG00000050051)	Ercc6l (ENSRNOG00000003208)