Rodentia_A	ANCESTRAL SPECIES	9	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00390000006492	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000163331	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252	ENSGT00940000163191 #30	ENSGT00950000182963.b.b #31	ENSGT00510000047029 #32	ENSGT00940000156837 #33	ENSGT00390000005569.x.a.b.a #34	ENSGT00530000063624.B
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00390000002414 #8	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000163331	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00940000163191 #30	ENSGT00950000182963.b.b #31	ENSGT00510000047029 #32	ENSGT00940000156837.`b #33	ENSGT00390000005569.x.a.b.a #34	ENSGT00390000005569.x.a.b.b.a.a ##34	ENSGT00530000063624.B
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00390000002414 #8	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00940000163191 #30	ENSGT00950000182963.b.b #31	ENSGT00510000047029 #32	ENSGT00940000156837.`b #33	ENSGT00390000005569.x.a.b.a #34	ENSGT00990000205127 #35	ENSGT00940000157843 #36	ENSGT00950000183118.A.c.b #37
Guinea pig	MODERN SPECIES	26	AWAT2 (ENSCPOG00000000245) #7	ENSCPOG00000010797 #8	DGAT2L6 (ENSCPOG00000003992) #9	AWAT1 (ENSCPOG00000003996) #10	ENSCPOG00000036057 #11	PDZD11 (ENSCPOG00000000210) #12	KIF4A (ENSCPOG00000000211) #13	GDPD2 (ENSCPOG00000035846) #14	DLG3 (ENSCPOG00000000746) #15	SLC7A3 (ENSCPOG00000005002) #16	SNX12 (ENSCPOG00000011841) #17	FOXO4 (ENSCPOG00000004771) #18	CXorf65 (ENSCPOG00000004768) #19	IL2RG (ENSCPOG00000031320) #20	MED12 (ENSCPOG00000000903) #21	NLGN3 (ENSCPOG00000006193) #22	ZMYM3 (ENSCPOG00000010256) #23	ENSCPOG00000010263 #24	ITGB1BP2 (ENSCPOG00000038156) #25	ENSCPOG00000039595 #26	ENSCPOG00000035003 #27	OGT (ENSCPOG00000014682) #28	CXCR3 (ENSCPOG00000008446) #29	RTL5 (ENSCPOG00000021990) #30	NHSL2 (ENSCPOG00000005172) #31	PIN4 (ENSCPOG00000031758) #32	ERCC6L (ENSCPOG00000011407) #33	ENSCPOG00000006337 #34	ENSCPOG00000003816 #35	HDAC8 (ENSCPOG00000005671) #36	PHKA1 (ENSCPOG00000005675) #37
Hystricomorpha_b	ANCESTRAL SPECIES	74	ENSGT00390000002414 #8	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00950000182963.b.b #31	ENSGT00940000163191 #30	ENSGT00510000047029 #32	ENSGT00940000156837.`b #33	ENSGT00390000005569.x.a.b.a #34	ENSGT00990000205127 #35	ENSGT00940000157843 #36	ENSGT00950000183118.A.c.b #37
Long-tailed chinchilla	MODERN SPECIES	182	DGAT2L6 (ENSCLAG00000010060) #9	AWAT1 (ENSCLAG00000010172) #10	P2RY4 (ENSCLAG00000010260)	ARR3 (ENSCLAG00000009975) ##11	PDZD11 (ENSCLAG00000010168) #12	KIF4A (ENSCLAG00000010302) #13	GDPD2 (ENSCLAG00000010906) #14	DLG3 (ENSCLAG00000015561) #15	ENSCLAG00000009581	SLC7A3 (ENSCLAG00000010508) #16	SNX12 (ENSCLAG00000004505) #17	FOXO4 (ENSCLAG00000005543) #18	CXorf65 (ENSCLAG00000005706) #19	IL2RG (ENSCLAG00000003047) #20	MED12 (ENSCLAG00000003799) #21	NLGN3 (ENSCLAG00000006482) #22	GJB1 (ENSCLAG00000004895)	ZMYM3 (ENSCLAG00000003585) #23	NONO (ENSCLAG00000003642) #24	ITGB1BP2 (ENSCLAG00000003431) #25	ENSCLAG00000004940 #27	OGT (ENSCLAG00000006474) #28	ENSCLAG00000009475	CXCR3 (ENSCLAG00000010111) #29	NHSL2 (ENSCLAG00000011242) #31	RTL5 (ENSCLAG00000014510) #30	PIN4 (ENSCLAG00000014880) #32	ENSCLAG00000015218 #33	ENSCLAG00000015266 #34	ENSCLAG00000015363 #35	HDAC8 (ENSCLAG00000015755) #36
Degu	MODERN SPECIES	321										SLC7A3 (ENSODEG00000003945) #16	ENSODEG00000003876	SNX12 (ENSODEG00000003826) #17	FOXO4 (ENSODEG00000003760) #18	IL2RG (ENSODEG00000003714) #20	MED12 (ENSODEG00000003271) #21	NLGN3 (ENSODEG00000003089) #22	GJB1 (ENSODEG00000003069)	ZMYM3 (ENSODEG00000003059) #23	ENSODEG00000018894	ENSODEG00000002994 ##24	ITGB1BP2 (ENSODEG00000002957) #25	ENSODEG00000002771 #27	OGT (ENSODEG00000002656) #28	CXCR3 (ENSODEG00000002401) #29	RTL5 (ENSODEG00000002380) #30	NHSL2 (ENSODEG00000002360) #31	ENSODEG00000002336 #32	ERCC6L (ENSODEG00000002328) #33	RPS4X (ENSODEG00000002268) ##34	ENSODEG00000002252 #35	ENSODEG00000002215
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000039057	NEXMIF (ENSHGLG00000012593)	ABCB7 (ENSHGLG00000011499)	UPRT (ENSHGLG00000050110)	ENSHGLG00000011317	ENSHGLG00000006554	ZDHHC15 (ENSHGLG00000005176)	ENSHGLG00000004443	ENSHGLG00000035742	ENSHGLG00000032329	ENSHGLG00000045854 #17	FOXO4 (ENSHGLG00000013305) #18	ENSHGLG00000004894 #19	ENSHGLG00000010744 #20	MED12 (ENSHGLG00000005421) #21	NLGN3 (ENSHGLG00000009982) #22	GJB1 (ENSHGLG00000004743)	ZMYM3 (ENSHGLG00000014526) #23	NONO (ENSHGLG00000005550) #24	ITGB1BP2 (ENSHGLG00000015433) #25	ENSHGLG00000050039	ENSHGLG00000050796	ENSHGLG00000014818 #27	ENSHGLG00000031947	ENSHGLG00000049149	ENSHGLG00000040608 #28	ENSHGLG00000007209 #28	ENSHGLG00000042327	ENSHGLG00000050614	ENSHGLG00000008499 #29	ENSHGLG00000034062
Sciuridae	ANCESTRAL SPECIES	35	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00390000006492	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000163331	ENSGT00940000155242 #27	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.a.a	ENSGT00390000015252.b	ENSGT00940000163191 #30	ENSGT00950000182963.b.b #31	ENSGT00510000047029 #32	ENSGT00940000156837 #33	ENSGT00390000005569.x.a.b.a #34
Marmotini	ANCESTRAL SPECIES	66	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00390000006492	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000163331	ENSGT00940000155242 #27	ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a.a	ENSGT00390000018613.b.t.a	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00390000015252.a.a	ENSGT00390000015252.a.b	ENSGT00940000163191 #30	ENSGT00950000182963.b.b #31	ENSGT00510000047029 #32
Marmotini_b	ANCESTRAL SPECIES	98	ENSGT01030000234582.f.a.a.a.a #9	ENSGT01030000234582.f.a.a.b #10	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b ##11	ENSGT00940000153222.a.b.b.b.b #12	ENSGT00940000158195 #13	ENSGT00940000159625 #14	ENSGT00940000159565 #15	ENSGT00390000006492	ENSGT00940000154651 #16	ENSGT00940000153609.a #17	ENSGT00940000159334 #18	ENSGT00510000049291 #19	ENSGT00510000048979 #20	ENSGT00440000037505.b #21	ENSGT00940000159580 #22	ENSGT01030000234513.B.a	ENSGT00940000160693 #23	ENSGT00940000154442.sc.b #24	ENSGT00940000159429 #25	ENSGT00940000163331	ENSGT00940000155242 #27	ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a.a	ENSGT00390000018613.b.t.a	ENSGT00940000155085.b #28	ENSGT01050000244848.B.a.b #29
Squirrel	MODERN SPECIES	362	DGAT2L6 (ENSSTOG00000024800) #9	AWAT1 (ENSSTOG00000011451) #10	P2RY4 (ENSSTOG00000015697)	Arr3 (ENSSTOG00000011462) ##11	PDZD11 (ENSSTOG00000027107) #12	KIF4A (ENSSTOG00000009604) #13	GDPD2 (ENSSTOG00000004472) #14	DLG3 (ENSSTOG00000009640) #15	TEX11 (ENSSTOG00000009656)	SLC7A3 (ENSSTOG00000014255) #16	SNX12 (ENSSTOG00000028586) #17	FOXO4 (ENSSTOG00000014587) #18	CXorf65 (ENSSTOG00000031360) #19	IL2RG (ENSSTOG00000031446) #20	MED12 (ENSSTOG00000015847) #21	NLGN3 (ENSSTOG00000015853) #22	GJB1 (ENSSTOG00000023581)	ZMYM3 (ENSSTOG00000015858) #23	NONO (ENSSTOG00000015869) #24	ITGB1BP2 (ENSSTOG00000015874) #25	ENSSTOG00000015879 #27	ENSSTOG00000024910	ENSSTOG00000032111	OGT (ENSSTOG00000012021) #28	CXCR3 (ENSSTOG00000008726) #29
Arctic ground squirrel	MODERN SPECIES	546									ENSUPAG00010005983	SLC7A3 (ENSUPAG00010005959) #16	SNX12 (ENSUPAG00010005944) #17	FOXO4 (ENSUPAG00010005942) #18	CXorf65 (ENSUPAG00010005934) #19	IL2RG (ENSUPAG00010005932) #20	MED12 (ENSUPAG00010005824) #21	NLGN3 (ENSUPAG00010005804) #22	GJB1 (ENSUPAG00010005797)	ZMYM3 (ENSUPAG00010005753) #23	NONO (ENSUPAG00010005675) #24	ITGB1BP2 (ENSUPAG00010005653) #25	ENSUPAG00010005634	ENSUPAG00010005288 #27	ENSUPAG00010005279	OGT (ENSUPAG00010005205) #28	CXCR3 (ENSUPAG00010005200) #29
Alpin marmot	MODERN SPECIES	74	ENSMMMG00000022106 #8	DGAT2L6 (ENSMMMG00000022102) #9	AWAT1 (ENSMMMG00000022093) #10	P2RY4 (ENSMMMG00000022091)	ARR3 (ENSMMMG00000022081) ##11	PDZD11 (ENSMMMG00000022078) #12	ENSMMMG00000022071	KIF4A (ENSMMMG00000022057) #13	GDPD2 (ENSMMMG00000022047) #14	ENSMMMG00000022037 #15	SLC7A3 (ENSMMMG00000022021) #16	FOXO4 (ENSMMMG00000022014) #18	CXorf65 (ENSMMMG00000022011) #19	IL2RG (ENSMMMG00000022006) #20	MED12 (ENSMMMG00000021946) #21	NLGN3 (ENSMMMG00000021942) #22	GJB1 (ENSMMMG00000021941)	ZMYM3 (ENSMMMG00000021815) #23	ITGB1BP2 (ENSMMMG00000021791) #25	ENSMMMG00000021790	ENSMMMG00000021716 #27	ENSMMMG00000021704	ENSMMMG00000021699	ENSMMMG00000021687 #28	CXCR3 (ENSMMMG00000021685) #29	ENSMMMG00000021680	ENSMMMG00000021674	ENSMMMG00000021670	RTL5 (ENSMMMG00000021665) #30	NHSL2 (ENSMMMG00000021658) #31	PIN4 (ENSMMMG00000021657) #32
Eurasian red squirrel	MODERN SPECIES	156	DGAT2L6 (ENSSVLG00005018323) #9	AWAT1 (ENSSVLG00005018253) #10	P2RY4 (ENSSVLG00005018235)	ARR3 (ENSSVLG00005017806) ##11	ENSSVLG00005017695 #12	KIF4A (ENSSVLG00005017359) #13	GDPD2 (ENSSVLG00005017032) #14	DLG3 (ENSSVLG00005016553) #15	TEX11 (ENSSVLG00005015907)	SLC7A3 (ENSSVLG00005015759) #16	SNX12 (ENSSVLG00005015734) #17	FOXO4 (ENSSVLG00005015644) #18	CXorf65 (ENSSVLG00005015576) #19	IL2RG (ENSSVLG00005015413) #20	MED12 (ENSSVLG00005014181) #21	NLGN3 (ENSSVLG00005013911) #22	GJB1 (ENSSVLG00005013631)	ZMYM3 (ENSSVLG00005019858) #23	NONO (ENSSVLG00005019645) #24	ITGB1BP2 (ENSSVLG00005019473) #25	ENSSVLG00005019328	ENSSVLG00005018492 #27	ENSSVLG00005018371	OGT (ENSSVLG00005018140) #28	CXCR3 (ENSSVLG00005018095) #29	ENSSVLG00005018019	SERP1 (ENSSVLG00005017996)	ENSSVLG00005017896	ENSSVLG00005017662	ENSSVLG00005017338	ENSSVLG00005017271