Murinae	ANCESTRAL SPECIES	12	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #9	ENSGT00940000160197 #15	ENSGT00940000153404.b	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00940000157456 #22	ENSGT00940000163662 #23	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #31	ENSGT00730000111066 #32	ENSGT00940000157489 #33	ENSGT00390000015224.c.b.a.k.a.a ##34	ENSGT00390000006234 #35	ENSGT00390000015355 #36	ENSGT00390000018294 #37	ENSGT00670000098059	ENSGT00940000155155
Rat	MODERN SPECIES	5	ENSRNOG00000067114 #7	Pcdh7 (ENSRNOG00000012367) #8	Pcdh7 (ENSRNOG00000063828) #9	ENSRNOG00000067336 #10	AABR07015346.1 (ENSRNOG00000027791) #11	ENSRNOG00000065159 #12	LOC108348204 (ENSRNOG00000063351) #13	ENSRNOG00000065472 #14	Arap2 (ENSRNOG00000056826) #15	AABR07015180.1 (ENSRNOG00000026134) #16	Nwd2 (ENSRNOG00000051837) #17	LOC498368 (ENSRNOG00000002191) #18	Rell1 (ENSRNOG00000002192) #19	Pgm2 (ENSRNOG00000002185) #20	Tbc1d1 (ENSRNOG00000002180) #21	Klf3 (ENSRNOG00000002163) #22	Tlr10 (ENSRNOG00000067138) #23	Tlr1 (ENSRNOG00000038722) #24	Tlr6 (ENSRNOG00000002161) #25	Fam114a1 (ENSRNOG00000026504) #26	Tmem156 (ENSRNOG00000026518) #27	Klhl5 (ENSRNOG00000008421) #28	LOC100910864 (ENSRNOG00000070747) #29	AC109707.1 (ENSRNOG00000049527) #30	Wdr19 (ENSRNOG00000002932) #31	Rfc1 (ENSRNOG00000002855) #32	Klb (ENSRNOG00000002834) #33	Rpl9-ps30 (ENSRNOG00000026716) #34	Lias (ENSRNOG00000002759) #35	Ugdh (ENSRNOG00000002643) #36	Smim14 (ENSRNOG00000066377) #37
Mus	ANCESTRAL SPECIES	14	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #9	ENSGT00530000063435.a.p	ENSGT00940000160197 #15	ENSGT00940000153404.b	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00940000157456 #22	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #31	ENSGT00730000111066 #32	ENSGT00940000157489 #33	ENSGT00390000015224.c.b.a.k.a.a ##34	ENSGT00390000006234 #35	ENSGT00390000015355 #36	ENSGT00940000166010	ENSGT00390000018294 #37	ENSGT00670000098059	ENSGT00940000155155
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #9	ENSGT00530000063435.a.p	ENSGT00940000160197 #15	ENSGT00940000153404.b	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00940000157456 #22	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #31	ENSGT00730000111066 #32	ENSGT00940000157489 #33	ENSGT00390000015224.c.b.a.k.a.a ##34	ENSGT00390000006234 #35	ENSGT00390000015355 #36	ENSGT00940000166010	ENSGT00390000018294 #37	ENSGT00670000098059.q	ENSGT00940000155155
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #9	ENSGT00530000063435.a.p	ENSGT00940000160197 #15	ENSGT00940000153404.b	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00940000157456 #22	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #31	ENSGT00730000111066 #32	ENSGT00940000157489 #33	ENSGT00390000015224.c.b.a.k.a.a ##34	ENSGT00390000006234 #35	ENSGT00390000015355 #36	ENSGT00940000166010	ENSGT00390000018294 #37	ENSGT00670000098059.q	ENSGT00940000155155
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #9	ENSGT00530000063435.a.p	ENSGT00940000160197 #15	ENSGT00940000153404.b	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00940000157456 #22	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #31	ENSGT00730000111066 #32	ENSGT00940000157489 #33	ENSGT00390000015224.c.b.a.k.a.a ##34	ENSGT00390000006234 #35	ENSGT00390000015355 #36	ENSGT00940000166010	ENSGT00390000018294 #37	ENSGT00670000098059.q	ENSGT00940000155155
Steppe mouse	MODERN SPECIES	3316														Tbc1d1 (ENSMSIG00000010885) #21	ENSMSIG00000010865	Klf3 (ENSMSIG00000010840) #22	Tlr1 (ENSMSIG00000010831) #24	Tlr6 (ENSMSIG00000010824) #25	Fam114a1 (ENSMSIG00000010803) #26	Tmem156 (ENSMSIG00000010754) #27	Klhl5 (ENSMSIG00000010666) #28	Wdr19 (ENSMSIG00000010456) #31	Rfc1 (ENSMSIG00000010211) #32	Klb (ENSMSIG00000010181) #33	ENSMSIG00000010100 ##34	Lias (ENSMSIG00000010054) #35	Ugdh (ENSMSIG00000010023) #36	ENSMSIG00000010011	ENSMSIG00000009949 #37	ENSMSIG00000009795	Pds5a (ENSMSIG00000009696)
spretus	MODERN SPECIES	14	Sel1l3 (MGP_SPRETEiJ_G0028218)	Smim20 (MGP_SPRETEiJ_G0028219)	MGP_SPRETEiJ_G0028220	Cckar (MGP_SPRETEiJ_G0028221)	Tbc1d19 (MGP_SPRETEiJ_G0028222)	Stim2 (MGP_SPRETEiJ_G0028223)	Pcdh7 (MGP_SPRETEiJ_G0028224) #9	G6pd2 (MGP_SPRETEiJ_G0028225)	Arap2 (MGP_SPRETEiJ_G0028226) #15	Dthd1 (MGP_SPRETEiJ_G0028227)	Nwd2 (MGP_SPRETEiJ_G0028228) #17	0610040J01Rik (MGP_SPRETEiJ_G0028229) #18	Rell1 (MGP_SPRETEiJ_G0028230) #19	Pgm2 (MGP_SPRETEiJ_G0028231) #20	Tbc1d1 (MGP_SPRETEiJ_G0028232) #21	Klf3 (MGP_SPRETEiJ_G0028233) #22	Tlr6 (MGP_SPRETEiJ_G0028235) #25	Fam114a1 (MGP_SPRETEiJ_G0028236) #26	MGP_SPRETEiJ_G0028237 #27	Klhl5 (MGP_SPRETEiJ_G0028238) #28	Wdr19 (MGP_SPRETEiJ_G0028239) #31	Rfc1 (MGP_SPRETEiJ_G0028240) #32	Klb (MGP_SPRETEiJ_G0028241) #33	MGP_SPRETEiJ_G0028242 ##34	Lias (MGP_SPRETEiJ_G0028243) #35	Ugdh (MGP_SPRETEiJ_G0028244) #36	MGP_SPRETEiJ_G0028245	Smim14 (MGP_SPRETEiJ_G0028246) #37	Ube2k (MGP_SPRETEiJ_G0028247)	Pds5a (MGP_SPRETEiJ_G0028248)	N4bp2 (MGP_SPRETEiJ_G0028249)
Mouse	MODERN SPECIES	14	Sel1l3 (ENSMUSG00000029189)	Smim20 (ENSMUSG00000061461)	Rbpj (ENSMUSG00000039191)	Cckar (ENSMUSG00000029193)	Tbc1d19 (ENSMUSG00000039178)	Stim2 (ENSMUSG00000039156)	Pcdh7 (ENSMUSG00000029108) #9	G6pd2 (ENSMUSG00000089992)	Arap2 (ENSMUSG00000037999) #15	Dthd1 (ENSMUSG00000090326)	Nwd2 (ENSMUSG00000090061) #17	0610040J01Rik (ENSMUSG00000060512) #18	Rell1 (ENSMUSG00000047881) #19	Pgm2 (ENSMUSG00000029171) #20	Tbc1d1 (ENSMUSG00000029174) #21	Klf3 (ENSMUSG00000029178) #22	Tlr1 (ENSMUSG00000044827) #24	Tlr6 (ENSMUSG00000051498) #25	Fam114a1 (ENSMUSG00000029185) #26	Tmem156 (ENSMUSG00000037913) #27	Klhl5 (ENSMUSG00000054920) #28	Wdr19 (ENSMUSG00000037890) #31	Rfc1 (ENSMUSG00000029191) #32	Klb (ENSMUSG00000029195) #33	Rpl9 (ENSMUSG00000047215) ##34	Lias (ENSMUSG00000029199) #35	Ugdh (ENSMUSG00000029201) #36	Gm43552 (ENSMUSG00000105835)	Smim14 (ENSMUSG00000037822) #37	Ube2k (ENSMUSG00000029203)	Pds5a (ENSMUSG00000029202)
Ryukyu mouse	MODERN SPECIES	14	Sel1l3 (MGP_CAROLIEiJ_G0027223)	Smim20 (MGP_CAROLIEiJ_G0027224)	MGP_CAROLIEiJ_G0027225	Cckar (MGP_CAROLIEiJ_G0027226)	Tbc1d19 (MGP_CAROLIEiJ_G0027227)	Stim2 (MGP_CAROLIEiJ_G0027228)	Pcdh7 (MGP_CAROLIEiJ_G0027229) #9	G6pd2 (MGP_CAROLIEiJ_G0027230)	Arap2 (MGP_CAROLIEiJ_G0027231) #15	Dthd1 (MGP_CAROLIEiJ_G0027232)	Nwd2 (MGP_CAROLIEiJ_G0027233) #17	0610040J01Rik (MGP_CAROLIEiJ_G0027234) #18	Rell1 (MGP_CAROLIEiJ_G0027235) #19	Pgm2 (MGP_CAROLIEiJ_G0027236) #20	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238) #22	Tlr1 (MGP_CAROLIEiJ_G0027239) #24	Tlr6 (MGP_CAROLIEiJ_G0027240) #25	Fam114a1 (MGP_CAROLIEiJ_G0027241) #26	MGP_CAROLIEiJ_G0027242 #27	Klhl5 (MGP_CAROLIEiJ_G0027243) #28	Wdr19 (MGP_CAROLIEiJ_G0027244) #31	Rfc1 (MGP_CAROLIEiJ_G0027245) #32	Klb (MGP_CAROLIEiJ_G0027246) #33	MGP_CAROLIEiJ_G0027247 ##34	Lias (MGP_CAROLIEiJ_G0027248) #35	Ugdh (MGP_CAROLIEiJ_G0027249) #36	MGP_CAROLIEiJ_G0027250	Smim14 (MGP_CAROLIEiJ_G0027251) #37	Ube2k (MGP_CAROLIEiJ_G0027252)	Pds5a (MGP_CAROLIEiJ_G0027253)
Shrew mouse	MODERN SPECIES	4	Sel1l3 (MGP_PahariEiJ_G0017005)	Smim20 (MGP_PahariEiJ_G0017006)	Rbpj (MGP_PahariEiJ_G0017007)	Cckar (MGP_PahariEiJ_G0017008)	Tbc1d19 (MGP_PahariEiJ_G0017009)	Stim2 (MGP_PahariEiJ_G0017010)	Pcdh7 (MGP_PahariEiJ_G0017011) #9	G6pd2 (MGP_PahariEiJ_G0017012)	Arap2 (MGP_PahariEiJ_G0017013) #15	Dthd1 (MGP_PahariEiJ_G0017014)	Nwd2 (MGP_PahariEiJ_G0017015) #17	0610040J01Rik (MGP_PahariEiJ_G0017016) #18	Rell1 (MGP_PahariEiJ_G0017017) #19	Pgm2 (MGP_PahariEiJ_G0017018) #20	Tbc1d1 (MGP_PahariEiJ_G0017019) #21	Klf3 (MGP_PahariEiJ_G0017020) #22	Tlr1 (MGP_PahariEiJ_G0017021) #24	Tlr6 (MGP_PahariEiJ_G0017022) #25	Fam114a1 (MGP_PahariEiJ_G0017023) #26	MGP_PahariEiJ_G0017024 #27	Klhl5 (MGP_PahariEiJ_G0017025) #28	Wdr19 (MGP_PahariEiJ_G0017026) #31	Rfc1 (MGP_PahariEiJ_G0017027) #32	Klb (MGP_PahariEiJ_G0017028) #33	MGP_PahariEiJ_G0017029 ##34	Lias (MGP_PahariEiJ_G0017030) #35	Ugdh (MGP_PahariEiJ_G0017031) #36	MGP_PahariEiJ_G0017032	Smim14 (MGP_PahariEiJ_G0017033) #37	Ube2k (MGP_PahariEiJ_G0017034)	Pds5a (MGP_PahariEiJ_G0017035)