Murinae	ANCESTRAL SPECIES	12	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884 #23	ENSGT00940000162201 #24	ENSGT00390000010054.b #25	ENSGT00390000017929 #26	ENSGT00940000155358 #27	ENSGT00590000083165 #28	ENSGT00730000111066 #29	ENSGT00940000157489 #30	ENSGT00390000015224.c.b.a.k.a.a #31	ENSGT00390000006234 #32	ENSGT00390000015355 #33	ENSGT00390000018294 #35	ENSGT00670000098059 #36	ENSGT00940000155155 #37
Mus	ANCESTRAL SPECIES	14	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884 #23	ENSGT00940000162201 #24	ENSGT00390000010054.b #25	ENSGT00390000017929 #26	ENSGT00940000155358 #27	ENSGT00590000083165 #28	ENSGT00730000111066 #29	ENSGT00940000157489 #30	ENSGT00390000015224.c.b.a.k.a.a #31	ENSGT00390000006234 #32	ENSGT00390000015355 #33	ENSGT00940000166010	ENSGT00390000018294 #35	ENSGT00670000098059 #36	ENSGT00940000155155 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884 #23	ENSGT00940000162201 #24	ENSGT00390000010054.b #25	ENSGT00390000017929 #26	ENSGT00940000155358 #27	ENSGT00590000083165 #28	ENSGT00730000111066 #29	ENSGT00940000157489 #30	ENSGT00390000015224.c.b.a.k.a.a #31	ENSGT00390000006234 #32	ENSGT00390000015355 #33	ENSGT00940000166010	ENSGT00390000018294 #35	ENSGT00670000098059.q ##36	ENSGT00940000155155 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884 #23	ENSGT00940000162201 #24	ENSGT00390000010054.b #25	ENSGT00390000017929 #26	ENSGT00940000155358 #27	ENSGT00590000083165 #28	ENSGT00730000111066 #29	ENSGT00940000157489 #30	ENSGT00390000015224.c.b.a.k.a.a #31	ENSGT00390000006234 #32	ENSGT00390000015355 #33	ENSGT00940000166010	ENSGT00390000018294 #35	ENSGT00670000098059.q ##36	ENSGT00940000155155 #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884 #23	ENSGT00940000162201 #24	ENSGT00390000010054.b #25	ENSGT00390000017929 #26	ENSGT00940000155358 #27	ENSGT00590000083165 #28	ENSGT00730000111066 #29	ENSGT00940000157489 #30	ENSGT00390000015224.c.b.a.k.a.a #31	ENSGT00390000006234 #32	ENSGT00390000015355 #33	ENSGT00940000166010	ENSGT00390000018294 #35	ENSGT00670000098059.q ##36	ENSGT00940000155155 #37
Steppe mouse	MODERN SPECIES	3316														Tbc1d1 (ENSMSIG00000010885) #20	ENSMSIG00000010865 #21	Klf3 (ENSMSIG00000010840) #22	Tlr1 (ENSMSIG00000010831) #23	Tlr6 (ENSMSIG00000010824) #24	Fam114a1 (ENSMSIG00000010803) #25	Tmem156 (ENSMSIG00000010754) #26	Klhl5 (ENSMSIG00000010666) #27	Wdr19 (ENSMSIG00000010456) #28	Rfc1 (ENSMSIG00000010211) #29	Klb (ENSMSIG00000010181) #30	ENSMSIG00000010100 #31	Lias (ENSMSIG00000010054) #32	Ugdh (ENSMSIG00000010023) #33	ENSMSIG00000010011 #34	ENSMSIG00000009949 #35	ENSMSIG00000009795 #36	Pds5a (ENSMSIG00000009696) #37
spretus	MODERN SPECIES	14	Sel1l3 (MGP_SPRETEiJ_G0028218)	Smim20 (MGP_SPRETEiJ_G0028219)	MGP_SPRETEiJ_G0028220	Cckar (MGP_SPRETEiJ_G0028221)	Tbc1d19 (MGP_SPRETEiJ_G0028222)	Stim2 (MGP_SPRETEiJ_G0028223)	Pcdh7 (MGP_SPRETEiJ_G0028224)	G6pd2 (MGP_SPRETEiJ_G0028225)	Arap2 (MGP_SPRETEiJ_G0028226)	Dthd1 (MGP_SPRETEiJ_G0028227)	Nwd2 (MGP_SPRETEiJ_G0028228)	0610040J01Rik (MGP_SPRETEiJ_G0028229)	Rell1 (MGP_SPRETEiJ_G0028230)	Pgm2 (MGP_SPRETEiJ_G0028231)	Tbc1d1 (MGP_SPRETEiJ_G0028232) #20	Klf3 (MGP_SPRETEiJ_G0028233) #22	Tlr6 (MGP_SPRETEiJ_G0028235) #24	Fam114a1 (MGP_SPRETEiJ_G0028236) #25	MGP_SPRETEiJ_G0028237 #26	Klhl5 (MGP_SPRETEiJ_G0028238) #27	Wdr19 (MGP_SPRETEiJ_G0028239) #28	Rfc1 (MGP_SPRETEiJ_G0028240) #29	Klb (MGP_SPRETEiJ_G0028241) #30	MGP_SPRETEiJ_G0028242 #31	Lias (MGP_SPRETEiJ_G0028243) #32	Ugdh (MGP_SPRETEiJ_G0028244) #33	MGP_SPRETEiJ_G0028245	Smim14 (MGP_SPRETEiJ_G0028246) #35	Ube2k (MGP_SPRETEiJ_G0028247) ##36	Pds5a (MGP_SPRETEiJ_G0028248) #37	N4bp2 (MGP_SPRETEiJ_G0028249)
Mouse	MODERN SPECIES	14	Sel1l3 (ENSMUSG00000029189)	Smim20 (ENSMUSG00000061461)	Rbpj (ENSMUSG00000039191)	Cckar (ENSMUSG00000029193)	Tbc1d19 (ENSMUSG00000039178)	Stim2 (ENSMUSG00000039156)	Pcdh7 (ENSMUSG00000029108)	G6pd2 (ENSMUSG00000089992)	Arap2 (ENSMUSG00000037999)	Dthd1 (ENSMUSG00000090326)	Nwd2 (ENSMUSG00000090061)	0610040J01Rik (ENSMUSG00000060512)	Rell1 (ENSMUSG00000047881)	Pgm2 (ENSMUSG00000029171)	Tbc1d1 (ENSMUSG00000029174) #20	Klf3 (ENSMUSG00000029178) #22	Tlr1 (ENSMUSG00000044827) #23	Tlr6 (ENSMUSG00000051498) #24	Fam114a1 (ENSMUSG00000029185) #25	Tmem156 (ENSMUSG00000037913) #26	Klhl5 (ENSMUSG00000054920) #27	Wdr19 (ENSMUSG00000037890) #28	Rfc1 (ENSMUSG00000029191) #29	Klb (ENSMUSG00000029195) #30	Rpl9 (ENSMUSG00000047215) #31	Lias (ENSMUSG00000029199) #32	Ugdh (ENSMUSG00000029201) #33	Gm43552 (ENSMUSG00000105835)	Smim14 (ENSMUSG00000037822) #35	Ube2k (ENSMUSG00000029203) ##36	Pds5a (ENSMUSG00000029202) #37
Ryukyu mouse	MODERN SPECIES	14	Sel1l3 (MGP_CAROLIEiJ_G0027223)	Smim20 (MGP_CAROLIEiJ_G0027224)	MGP_CAROLIEiJ_G0027225	Cckar (MGP_CAROLIEiJ_G0027226)	Tbc1d19 (MGP_CAROLIEiJ_G0027227)	Stim2 (MGP_CAROLIEiJ_G0027228)	Pcdh7 (MGP_CAROLIEiJ_G0027229)	G6pd2 (MGP_CAROLIEiJ_G0027230)	Arap2 (MGP_CAROLIEiJ_G0027231)	Dthd1 (MGP_CAROLIEiJ_G0027232)	Nwd2 (MGP_CAROLIEiJ_G0027233)	0610040J01Rik (MGP_CAROLIEiJ_G0027234)	Rell1 (MGP_CAROLIEiJ_G0027235)	Pgm2 (MGP_CAROLIEiJ_G0027236)	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238) #22	Tlr1 (MGP_CAROLIEiJ_G0027239) #23	Tlr6 (MGP_CAROLIEiJ_G0027240) #24	Fam114a1 (MGP_CAROLIEiJ_G0027241) #25	MGP_CAROLIEiJ_G0027242 #26	Klhl5 (MGP_CAROLIEiJ_G0027243) #27	Wdr19 (MGP_CAROLIEiJ_G0027244) #28	Rfc1 (MGP_CAROLIEiJ_G0027245) #29	Klb (MGP_CAROLIEiJ_G0027246) #30	MGP_CAROLIEiJ_G0027247 ##31	Lias (MGP_CAROLIEiJ_G0027248) #32	Ugdh (MGP_CAROLIEiJ_G0027249) #33	MGP_CAROLIEiJ_G0027250	Smim14 (MGP_CAROLIEiJ_G0027251) #35	Ube2k (MGP_CAROLIEiJ_G0027252) ##36	Pds5a (MGP_CAROLIEiJ_G0027253) #37
Shrew mouse	MODERN SPECIES	4	Sel1l3 (MGP_PahariEiJ_G0017005)	Smim20 (MGP_PahariEiJ_G0017006)	Rbpj (MGP_PahariEiJ_G0017007)	Cckar (MGP_PahariEiJ_G0017008)	Tbc1d19 (MGP_PahariEiJ_G0017009)	Stim2 (MGP_PahariEiJ_G0017010)	Pcdh7 (MGP_PahariEiJ_G0017011)	G6pd2 (MGP_PahariEiJ_G0017012)	Arap2 (MGP_PahariEiJ_G0017013)	Dthd1 (MGP_PahariEiJ_G0017014)	Nwd2 (MGP_PahariEiJ_G0017015)	0610040J01Rik (MGP_PahariEiJ_G0017016)	Rell1 (MGP_PahariEiJ_G0017017)	Pgm2 (MGP_PahariEiJ_G0017018)	Tbc1d1 (MGP_PahariEiJ_G0017019) #20	Klf3 (MGP_PahariEiJ_G0017020) #22	Tlr1 (MGP_PahariEiJ_G0017021) #23	Tlr6 (MGP_PahariEiJ_G0017022) #24	Fam114a1 (MGP_PahariEiJ_G0017023) #25	MGP_PahariEiJ_G0017024 #26	Klhl5 (MGP_PahariEiJ_G0017025) #27	Wdr19 (MGP_PahariEiJ_G0017026) #28	Rfc1 (MGP_PahariEiJ_G0017027) #29	Klb (MGP_PahariEiJ_G0017028) #30	MGP_PahariEiJ_G0017029 #31	Lias (MGP_PahariEiJ_G0017030) #32	Ugdh (MGP_PahariEiJ_G0017031) #33	MGP_PahariEiJ_G0017032	Smim14 (MGP_PahariEiJ_G0017033) #35	Ube2k (MGP_PahariEiJ_G0017034) #36	Pds5a (MGP_PahariEiJ_G0017035) #37
Rat	MODERN SPECIES	5	ENSRNOG00000067114	Pcdh7 (ENSRNOG00000012367)	Pcdh7 (ENSRNOG00000063828)	ENSRNOG00000067336	AABR07015346.1 (ENSRNOG00000027791)	ENSRNOG00000065159	LOC108348204 (ENSRNOG00000063351)	ENSRNOG00000065472	Arap2 (ENSRNOG00000056826)	AABR07015180.1 (ENSRNOG00000026134)	Nwd2 (ENSRNOG00000051837)	LOC498368 (ENSRNOG00000002191)	Rell1 (ENSRNOG00000002192)	Pgm2 (ENSRNOG00000002185)	Tbc1d1 (ENSRNOG00000002180) #20	Klf3 (ENSRNOG00000002163) #22	Tlr10 (ENSRNOG00000067138)	Tlr1 (ENSRNOG00000038722) #23	Tlr6 (ENSRNOG00000002161) #24	Fam114a1 (ENSRNOG00000026504) #25	Tmem156 (ENSRNOG00000026518) #26	Klhl5 (ENSRNOG00000008421) #27	LOC100910864 (ENSRNOG00000070747)	AC109707.1 (ENSRNOG00000049527)	Wdr19 (ENSRNOG00000002932) #28	Rfc1 (ENSRNOG00000002855) #29	Klb (ENSRNOG00000002834) #30	Rpl9-ps30 (ENSRNOG00000026716) ##31	Lias (ENSRNOG00000002759) #32	Ugdh (ENSRNOG00000002643) #33	Smim14 (ENSRNOG00000066377) #35